Cp4.1LG04g01840 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g01840
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	sec-independent protein translocase protein TATA, chloroplastic
Location	Cp4.1LG04: 230256 .. 237179 (+)
RNA-Seq Expression	Cp4.1LG04g01840
Synteny	Cp4.1LG04g01840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCAAACCGATAAACTTTCCAATTCCCAGAATCAAGATTTTCCCCTCAACGACGCCCGCCATGGTAATCTCATCTGCAACTTTATCCTTCACATCTTCCATTCCCAGGCTTCCATCGTTTTCCCCTCCGTTTTCCTCCTCCAAATCCTCCTTCTTCGCCAACAATGCCACCGCCAATTCCTTCAACAAAGGCGACCATAGCCATTCTTTGCTATTGCGAACCACCAGGTCCAGAAAGACGATGGATAGAGCTCATAAGGGTCTCACTTGTAACGCTCTGTTTGGACTTGGAGTGCCTGAGCTTGTTGTAATTGCCGGCGTTGCCGCTCTGGTTTTTGGCCCGAAGAAGTTGCCTGAAGTTGGGAAGAGTATTGGAAAAACGGTCAAGAGCTTCCAACAGGTATGTTTATGTGTGGTTTTAATCAATTGTGTCAGTTTGGTTGCTCGGAAATTGTTGATTGTTAGGGATTTGATATCGGGAAGAGTTTTTTTCCACTGGATTTGGATAGTATGTGGTGTAGATGTTTGGAAATTGATTATTTGATGATTGTTGTTTCGTATAGTCGGATTAGGGAAGATTTTTACTGAATTTGAAATGAGATTGAATTGATGCAAAGTACGTTTTAGCTAACTAGAAAGCTTATCTACTTTTTCATGGGACTTGAACAACAATAGTTTGGAATTAGATGAAGCCTTGGTTTCGTGCCTTTTTCTGGATGTAAATAGAAATGCTTCACTTAAAAACAGTCCTATCAAAATCTGTTGTAAGTTTTCATGAAGATGTATTGTCATACCACTCCTTTAGTTCATAACCCTTTTAGCTCATATTCTCATTTATTTGGTTCATGTATGAGAATTAGTATTGATATGCCTATATAAAGGCTTGTCTAGCATTGCTTTGAGGTGTGGAGTCATTGTTTGAAGTCCCACATTGGTTGGAGAGGAGAACAAAACACCCTTTATAAGGGTGTGGAAACCTTCCCCTAGCAGATGCGTTTTAAAGCCTTGAGGGGAAACCCGAAAGGGAGAGCTCAAAGAGGACAATATCTGCTAGCGGTGGATCTGGGCTGTTACAAATGGTATCAGAGCCAGGCACCGGACTATGTGCTAGCGAGGAGGCTGTTCCCCAAAGGGGGGTAGACACGAGGCGGTGTGCCAGTAAGGACGCTGGCCCCAAAGGGGGTGGATTTGGTGGCGGTCCCACATCGATTGAAGAAAGGAACGAGTGCCAGTGAGGACGCTGGGCCCCGAAGGGGGGTGGATTGTGATGTCCCACATTGGTTGGAGAGGAGAACAAAATACCCTTTATAAGGGCGTGGAAACCTTCCCCTAACAAACACGTTTTAAAGCCTTGAGGGGAATCCCGGAGAGCTCAAAGAGGACAATATCTGCTAGCGGTAGATCTGGGCTATTACACATTGTCATTTTGTATTTGCCTAGAGGCAATTGGGAGGAACTTTGNGAATTAGTATTGATATGCCTATATAAAGGCTTGTCTAGCATTGCTTTGAGGTGTGGAGTCATTGTTTGAAGTCCCACATTGGTTGGAGAGGAGAACAAAACACCCTTTATAAGGGTGTGGAAACCTTCCCCTAGCAGATGCGTTTTAAAGCCTTGAGGGGAAACCCGAAAGGGAGAGCTCAAAGAGGACAATATCTGCTAGCGGTGGATCTGGGCTGTTACAAATGGTATCAGAGCCAGGCACCGGACTATGTGCTAGCGAGGAGGCTGTTCCCCAAAGGGGGGTAGACACGAGGCGGTGTGCCAGTAAGGACGCTGGCCCCAAAGGGGGTGGATTTGGTGGCGGTCCCACATCGATTGAAGAAAGGAACGAGTGCCAGTGAGGACGCTGGGCCCCGAAGGGGGGTGGATTGTGATGTCCCACATTGGTTGGAGAGGAGAACAAAATACCCTTTATAAGGGCGTGGAAACCTTCCCCTAACAAACACGTTTTAAAGCCTTGAGGGGAATCCCGGAGAGCTCAAAGAGGACAATATCTGCTAGCGGTAGATCTGGGCTATTACACATTGTCATTTTGTATTTGCCTAGAGGCAATTGGGAGGAACTTTGTTGAGAGACTTTGTTGTAGTGTGAGAGTGTGAGAGATACACTTGTAAACACTTTGGTTATAGTGTGATTGACTACCAACCGTGGATGTAGGAGAATTTATTCCCTCCAATCCACGTAAATCTTTGTGTCTCGTTGTTTAATTTTCTGTTTGTGAGTGTGGGTGCAACCGATCTTGCTTTCGCTTACGCTACAACAAATGGGTATCAAAACATTTTGGTTGTGGCGCTTGGGTACAACAAGTGGTATCATAGAATTGAAAGTTGTGGCATTACGGCACAACAAAGTCATTCCGAACATTTAAAATGAATCAAATAATACTTCTGTAACTGTCTATGAACCTGTTGTTCTGGCTCAGCTATCGTGATAAAAATGGACTTAAATAGGTGGGAACTCCACCCTCTTTCTTGAGAGGACCTTTAGCATGTTGAATAAGAAAAGAAGAAAAGTTCTTGGAAATCTCAATGGCATGATCGTAAGCTGTCGTACAACCTACCCTGTGTGCTTCTCACATAGTTTGTGTATTTTGTGCAAAAAAGTTGGAAGACCATACCCATCTGTTCTGTTCCTTTAGTCAGAAGCCTTGATGTTCTTGTGCTGAAGTGTTCAATCTGGTGGAGGGTCTTTTAGTGTCTATCACACGGAACCTTTGCCAACCCCATCCTTTTAAGCGGAAAGTAAATATGTTTTGGAATTATATTATCAAAGCGGTATGTGGGAGGTGTGGTTGGACACTGGTTGGTGTAGTATGGTAAAGGGTGAAGTATGACAATTAGAATCTATAAAACAAAGGAGTGGGAAATAAAGATTCAACGAGATAGTAAACAAACGGAATCTTTAAGGGTCGGGAATCATAGATTCAACCAGATAAACCGGGGAAACATTATTTTTACTTGGTTCCGTTTTCTTAAAGAAGCAATTTCATTCACAAAAACAGAGGAGAAGTGCCTTGATCCGAAGCATTTGCAATAAACATTTCCATTTGGACTAATGATTGTTGGTATGATATTCTTGATACATTGAAGAAGACGATTAAGGAGGATTTCATGTTGGATCCTATCCATGTAGAAATGGGGAGATATTGAGATGTCTTGCTGCAGAATTGGCAAAAGATTTGTGCGTCTACGTTGGATGGTGACTGTAGGTGACTTTGCTATGAACTTCGAAGATTGGAATGAAAAAAAAAAATTATTAGCCAGCGGAGATGTTACTTTGTAGGTGATTAAAAGTGTTACCTTGTTATGGAGGTTTATTCATTAATAGGTGGATGAAGGAGGTCTCAAACCATCGGAGAATAACGTGCATATTCTATTTCTCATGCCGTGCTATGAAAAGGAGAAACAATGCAAAACGTTCACCCTATCTTTTCTCCAATCTTCGGGGGTAGTTGCTGCTGAAAGTCAGGAAGGGTGTTTGATATAATGCCACTACAAGTGTACACACGTTACACTCATGATAAAAAGAAGCAGTCACGTATGGAACCCATTAGTGGAATTGTCTTCCACCTTCATTTTGATTTTTAGTTATTCCCTTGTTTTAGATTAAGAAAATTTCTCAAATATTGGCTAATCCTTACTCCCTCCCACAACAACACTGTTAAGGGCTCAAGTTTGGGATCGAGTTATGGATCTCTCGTAAGTGGAGGTAGACAGTGTTTGTGTGGGGGAAGAAGTAGAATTCTTCTTTCGACCTATTTTGAATAATTGTAAGGCTCAAATAGAGGGAACCTTAAACCTTTGAGTTAAAGTACTCAAGACTAAATTGGAAATTTTTAGGTACCATCTTCATTGATGTTTATGACTATATGTACCAAGTTGTATAATAATCATTGTTACATCAATGGAACCATGACTCAATCATGGAGGATCATCCTCCTAGAACAAAGGAAATAACTAAAAATAGAAATGAAAATGGAATCCTTACAACCATTGTTATATCAATAGAGCCATGACTCAATCATGGAGGATCATCTTCAACTAACACCAGCTCTTCAGGAAAGGAGGAGAAAAAGAGGAGGAAAATGAAGGAAGAAAATGAAGAACAGTGTTCTTCAAAAGTTTTAATAAAGAACATAAACCTGCATATGTTCTGCAAAAATCAAACTTGGAAGTAATGGATAAAAGGGCAGTAAAATCTTTGTATACCTTTATTCATATTGGCTGGTGGGAGGTGTTCAGAAGATCAGTGGGATTGTTAACATTATGTATGAAAAGATAATAAGACTATAAGAGTTACAATTGAGACGTTTGTTGTAATAACGTTGAACCACAAAGGTTGCAGGAAAAATTTAAGAGTATCTTAGCAGTTACTCTTAGCTTGAATGTGAGCGGTCGAACATCAATGAGGTTAAGAGTATCTTAGCAGTTACTAATTCAACCATCGAAGTAATAACCAAATGCCTCAAAAGTGCTTTTTTCGGTACTTAAACCGTTAGTTTTTAATCGAAATCCATCCCCCATATCCTTCAATGAACTTTTGATGACTATGCTTGTATCAAACCAGTTCTCAATCTTCAGATTTAAATCACCAACCAATTGCCATTTTCCCAACACGCAGAAATCAATGCTTTATCAGTTATTAAGGAATTGATCTGCACTTAAATTTTAAAGTATGCTTCTGCTGAAGTTTTGATATCCTTCCAAGAAATATGCACAAACAGCTGACTTACCACCAAGAAACTTTCAAAATCCATTCTAACCACTTCATGAGGTTTTGTGTAAGACTATTGGATATTTCTGATGTTGTTTGTTAATTGTTATCTTATTTATTTATTTAATGAATTGATTGGATGTTCTTTTTATGTTTAAAGGTAGAAATTTACAATAAAGGTATCAAATATTCATAATTTGTCGAAATATATGCATATGTAAGGGGGGAAAAATTAACATGTCGTGTCCTACTTTTTTGAAAATCGATGTAATGATATTTCCATGTCGTATAGTTTCCAATGTCGTGTGTCCATGTCTGTGCTGCTCTATAGGATGGAAGTTGGTCATTTCAAGTTATTTTTCGCCAAAATCGATGCTTGATAAAGAATTAAAAAAAATGACACTGAAACCGAAGATTCGGAAGTTGTGTGAATCACACATTTAGTTTACACTAACCAATCGAGTTTGTTAATTCAGTTTCGTTGTTGTCTTATTTTTTCAAATTTTGGATTAGACCCCTATTGCTCTTAGGCCAACCTTCGGAGCCATTTACGTTTGAGCATAACATTCTTTCTTATCAAATTGTGTATCCCTAAATAACGAATAGCCGGAATCATGGCATCATTTACCCAAAGTACATTGGAGCCCCCATCTCAGAGACAAAACAAACTAGAATTATTCCAATTATGATTATCTGAATTGAATTGAAGTCTAGCTTTCTTTCTTTCTTTCTTTCTTTTTTTGTAAAATTATCAATTGCTCTGAAGTTTTATATTTCCCAAGGAATTTTCATTTCTTTCTAAACTTAGTAGTCTATATGTTATCGATATTTTATGATTACAAAGATGAAGTTTATGTAATACCTTTTTTATTTTAGAGTTATGAAAGGGAACTTCATATCTTGGACAAATTGAATATTGAGGCCTTGTAGTTTGTGTGCTACGTACCATATGAACCAACATTTTAAGTTTGCTGTTGTTATGAGTTCCCACAGGGTTCACTAGTTAGGTTCTTGCTAATTTCATTAACCTTGGCTATATTTGGAAGTGTCAAATGCACTTTTGACATGGACAAAAGAACTTTTGACTCGAAATGTTTAAAAAAAATCATGTAGGAGAGTAATATAAAATGCTTTTTGAAAAATTGGAAAGTGCCTTGAAATACTTTGTTGTAGAGCGTTATGGTCTATGTGCTTGATTGGGAAGTCCTTCCAAAGTACTTTTAAGAATGCATAACCAATTTTACTTTACTTTTGCTCATTGTACTTTTTTAAAACCATTTCCAAATACGCTTTTAAGCATTTGTTAGTGAGTTAGAACATAATATGGGCAACGTAGGAGACATCTCTATTTTTTCCCTCGGGAATCCATAGAAGTACCATTGCTTAGTTTTCAATTTACCTCTGACCATCAAATGAAATGTGAGTAACCCGTCTTCCTCTCTTTGAAACAAGGTACGTTTCTAGTTCTGTCGGTGCTTGAAACAATTTAGTTTTCTCCATATTACTATATCTCTAGAGTCAATAATTTTATATGAGGAACTACTGAACTCAATCACTTGCTGCCGTTACTNTTCTCTTTGAGGTCTATTATGTGGAGGTACTCAAATTGGATCAATGATTGATTTCTAGGTTTCGTCGTAAACCTAATTGGTTACTTCTAATAGTTCAAGTGAATCAAGGATAAAGTAGCTTCAAGTTCGTTTATGAAACATGTTTTCAATCTTTCTTATTGATTTTCAAGCTCGAGGAAAACTTCAATTGCTCAATGGTTAAAGAATCAGCTAAACGAGGTTATCTGCTTTTGAGTTTCCTAGTAGGACTTATGTTTCTAATATCATTGCAGGCAGCTAAGGAGTTCGAGTCCGAGCTGAAGAAAGAGCCCGAGTCAATCGGAGAGACCGCAGTAGAAAAGCCTACATCAGTAGATGATGAGGAGAAGCAAGATTTGAAGGTATCAAACCAAAAGGAGAGTGTATGAAGCGGTAGGTAGTACCATCAATTTCATGTCCACTTGTTCCTATCATTGTACTTTATGTATGTGAATGTGTCTTTGGAATCTGAAGATCACTTAATGAAGAAAATTAGTTTTCCAGTGCTGGTCTCTAATAGCTATCATATTCCACTCTAATTAAATCAAAAGGAATTATGAGCTACAAGCTCAAGAACAACCAGCAAGGCCGATCCAAGAGGGCAGCTTTTTGCCTTACT

mRNA sequence

CATCAAACCGATAAACTTTCCAATTCCCAGAATCAAGATTTTCCCCTCAACGACGCCCGCCATGGTAATCTCATCTGCAACTTTATCCTTCACATCTTCCATTCCCAGGCTTCCATCGTTTTCCCCTCCGTTTTCCTCCTCCAAATCCTCCTTCTTCGCCAACAATGCCACCGCCAATTCCTTCAACAAAGGCGACCATAGCCATTCTTTGCTATTGCGAACCACCAGGTCCAGAAAGACGATGGATAGAGCTCATAAGGGTCTCACTTGTAACGCTCTGTTTGGACTTGGAGTGCCTGAGCTTGTTGTAATTGCCGGCGTTGCCGCTCTGGTTTTTGGCCCGAAGAAGTTGCCTGAAGTTGGGAAGAGTATTGGAAAAACGGTCAAGAGCTTCCAACAGGCAGCTAAGGAGTTCGAGTCCGAGCTGAAGAAAGAGCCCGAGTCAATCGGAGAGACCGCAGTAGAAAAGCCTACATCAGTAGATGATGAGGAGAAGCAAGATTTGAAGGTATCAAACCAAAAGGAGAGTGTATGAAGCGGTAGGTAGTACCATCAATTTCATGTCCACTTGTTCCTATCATTGTACTTTATGTATGTGAATGTGTCTTTGGAATCTGAAGATCACTTAATGAAGAAAATTAGTTTTCCAGTGCTGGTCTCTAATAGCTATCATATTCCACTCTAATTAAATCAAAAGGAATTATGAGCTACAAGCTCAAGAACAACCAGCAAGGCCGATCCAAGAGGGCAGCTTTTTGCCTTACT

Coding sequence (CDS)

ATGGTAATCTCATCTGCAACTTTATCCTTCACATCTTCCATTCCCAGGCTTCCATCGTTTTCCCCTCCGTTTTCCTCCTCCAAATCCTCCTTCTTCGCCAACAATGCCACCGCCAATTCCTTCAACAAAGGCGACCATAGCCATTCTTTGCTATTGCGAACCACCAGGTCCAGAAAGACGATGGATAGAGCTCATAAGGGTCTCACTTGTAACGCTCTGTTTGGACTTGGAGTGCCTGAGCTTGTTGTAATTGCCGGCGTTGCCGCTCTGGTTTTTGGCCCGAAGAAGTTGCCTGAAGTTGGGAAGAGTATTGGAAAAACGGTCAAGAGCTTCCAACAGGCAGCTAAGGAGTTCGAGTCCGAGCTGAAGAAAGAGCCCGAGTCAATCGGAGAGACCGCAGTAGAAAAGCCTACATCAGTAGATGATGAGGAGAAGCAAGATTTGAAGGTATCAAACCAAAAGGAGAGTGTATGA

Protein sequence

MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRKTMDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV

Homology

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BLAST of Cp4.1LG04g01840 vs. ExPASy Swiss-Prot
Match: Q9XH46 (Sec-independent protein translocase protein TATA, chloroplastic OS=Pisum sativum OX=3888 GN=TATA PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.5e-27
Identity = 87/154 (56.49%), Postives = 107/154 (69.48%), Query Frame = 0


Query: 7   TLSFTSS--IP-RLPSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRKTMDR 66
           TLS +SS  IP RLP+ S     S  SF ++N+         ++ SLLL+  R +    R
Sbjct: 4   TLSISSSSVIPTRLPNSS---CYSNLSFLSSNS---------NTSSLLLKKARIK---TR 63

Query: 67  AHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELK 126
             KG TCNA FGLGVPELVVIAGVAALVFGPKKLPEVG+SIG+TVKSFQQAAKEFE+ELK
Sbjct: 64  TTKGFTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETELK 123

Query: 127 KEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           KEP    E +V       ++EKQ++KVS+ K++V
Sbjct: 124 KEPNPTEEISV-----ASEQEKQEIKVSSTKDNV 137

[Close]

BLAST of Cp4.1LG04g01840 vs. ExPASy Swiss-Prot
Match: Q9LKU2 (Sec-independent protein translocase protein TATA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TATA PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 9.6e-27
Identity = 90/157 (57.32%), Postives = 105/157 (66.88%), Query Frame = 0


Query: 1   MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRKT 60
           M  S ATL   SS P  P   P  SSS+SSFF+N  T  +     ++ SL+    R R+ 
Sbjct: 1   MATSVATL---SSPP--PVSLPLLSSSRSSFFSNCFTVTT---RPNTRSLVAIGRRIRQE 60

Query: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120
             R  K LTCNALFGLGVPEL VIAGVAAL+FGPKKLPE+GKSIGKTVKSFQQAAKEFES
Sbjct: 61  PTR--KPLTCNALFGLGVPELAVIAGVAALLFGPKKLPEIGKSIGKTVKSFQQAAKEFES 120

Query: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           ELK EPE     + +  TS  +EEK+    S+ KE+V
Sbjct: 121 ELKTEPEESVAESSQVATSNKEEEKKTEVSSSSKENV 147

[Close]

BLAST of Cp4.1LG04g01840 vs. ExPASy Swiss-Prot
Match: Q9XFJ8 (Sec-independent protein translocase protein TATA, chloroplastic OS=Zea mays OX=4577 GN=TATA PE=1 SV=2)

HSP 1 Score: 103.6 bits (257), Expect = 2.1e-21
Identity = 70/133 (52.63%), Postives = 83/133 (62.41%), Query Frame = 0


Query: 25  SSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRKTMDRAHKGLTCNALFGLGVPELVVI 84
           SS  SSF   +        GD +        R R+        L C  LFGLGVPEL VI
Sbjct: 44  SSRASSFVGGSG-------GDLAAVAASVAARPRRAGSGGGGALGCKCLFGLGVPELAVI 103

Query: 85  AGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEP-ESIGETAVEKPTSVDDE 144
           AGVAALVFGPK+LPE+G+SIGKTVKSFQQAAKEFE+ELKKEP E   +     PT+V   
Sbjct: 104 AGVAALVFGPKQLPEIGRSIGKTVKSFQQAAKEFETELKKEPGEGGDQPPPATPTAVSGG 163

Query: 145 EKQDLKVSNQKES 157
           E++ L+ S+ KES
Sbjct: 164 EEKGLEASSSKES 169

[Close]

BLAST of Cp4.1LG04g01840 vs. ExPASy Swiss-Prot
Match: Q75GK3 (Sec-independent protein translocase protein TATA, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=TATA PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.9e-21
Identity = 70/135 (51.85%), Postives = 85/135 (62.96%), Query Frame = 0


Query: 25  SSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRKTMDRAHKGLTCNALFGLGVPELVVI 84
           SS  SSF    A       G  + ++  RT        R    + C  LFGLGVPELVVI
Sbjct: 43  SSRASSFVTGGA-------GGLAVAVAARTRAGSGAGSRGGGAMGCKCLFGLGVPELVVI 102

Query: 85  AGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPESIGETAVEKPTSV---D 144
           AGVAALVFGPK+LPE+G+SIGKTVKSFQQAAKEFE+ELKKE +  G+     PT     D
Sbjct: 103 AGVAALVFGPKQLPEIGRSIGKTVKSFQQAAKEFETELKKESDDGGDQP-PPPTETAVSD 162

Query: 145 DEEKQDLKVSNQKES 157
             E+++L+ S+ KES
Sbjct: 163 GGEEKELEASSSKES 169

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BLAST of Cp4.1LG04g01840 vs. ExPASy Swiss-Prot
Match: Q31RR1 (Sec-independent protein translocase protein TatA OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=tatA PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.8e-12
Identity = 41/87 (47.13%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 74  FGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKE----PESI 133
           FG+G+PE++VI  +A LVFGPKKLPE+G+S+GK ++ FQ A++EFESE+K+E    P + 
Sbjct: 4   FGIGLPEMLVILAIALLVFGPKKLPEIGRSLGKALRGFQDASREFESEIKREIDRTPATP 63

Query: 134 GETAVEKPTSVDDEEKQDLKVSNQKES 157
            E  VE P  +D    + + V  Q E+
Sbjct: 64  AEATVEPPV-LDSAPTEAVTVEKQTET 89

[Close]

BLAST of Cp4.1LG04g01840 vs. NCBI nr
Match: XP_023529222.1 (sec-independent protein translocase protein TATA, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 290 bits (741), Expect = 2.87e-98
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRKT 60
           MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRKT
Sbjct: 1   MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRKT 60

Query: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120
           MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES
Sbjct: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120

Query: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 157
           ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV
Sbjct: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 157

[Close]

BLAST of Cp4.1LG04g01840 vs. NCBI nr
Match: XP_022932561.1 (sec-independent protein translocase protein TATA, chloroplastic [Cucurbita moschata])

HSP 1 Score: 287 bits (735), Expect = 2.36e-97
Identity = 155/157 (98.73%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRKT 60
           MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRKT
Sbjct: 1   MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRKT 60

Query: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120
           MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES
Sbjct: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120

Query: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 157
           ELKKEPESIGETAVEKP S+DDEEKQDLKVSNQKESV
Sbjct: 121 ELKKEPESIGETAVEKPASIDDEEKQDLKVSNQKESV 157

[Close]

BLAST of Cp4.1LG04g01840 vs. NCBI nr
Match: KAG6588320.1 (Sec-independent protein translocase protein TATA, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 285 bits (728), Expect = 2.75e-96
Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRKT 60
           MVISSATLSFTSSIPRLPSFSPPFSSSKSSFF+NN TANSFNKGDHSHS LLRTTRSRKT
Sbjct: 1   MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFSNNVTANSFNKGDHSHSSLLRTTRSRKT 60

Query: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120
           MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES
Sbjct: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120

Query: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 157
           ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV
Sbjct: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 157

[Close]

BLAST of Cp4.1LG04g01840 vs. NCBI nr
Match: KAG7020882.1 (Sec-independent protein translocase protein TATA, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 284 bits (727), Expect = 3.91e-96
Identity = 154/157 (98.09%), Postives = 154/157 (98.09%), Query Frame = 0


Query: 1   MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRKT 60
           MVISS TLSFTSSIPRLPSFSPPFSSSKSSFFANN TANSFNKGDHSHS LLRTTRSRKT
Sbjct: 1   MVISSVTLSFTSSIPRLPSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKT 60

Query: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120
           MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES
Sbjct: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120

Query: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 157
           ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV
Sbjct: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 157

[Close]

BLAST of Cp4.1LG04g01840 vs. NCBI nr
Match: XP_022969040.1 (sec-independent protein translocase protein TATA, chloroplastic [Cucurbita maxima])

HSP 1 Score: 283 bits (725), Expect = 7.89e-96
Identity = 154/157 (98.09%), Postives = 154/157 (98.09%), Query Frame = 0


Query: 1   MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRKT 60
           MVISSATLSFTSSIPRLPSFSPP SSSKSSFFANNATANSFNKGDHSHS LLRTTRSRKT
Sbjct: 1   MVISSATLSFTSSIPRLPSFSPPLSSSKSSFFANNATANSFNKGDHSHSSLLRTTRSRKT 60

Query: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120
           MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES
Sbjct: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120

Query: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 157
           ELKKEPESIGETAVEKPTSVDDEEKQDLK SNQKESV
Sbjct: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKASNQKESV 157

[Close]

BLAST of Cp4.1LG04g01840 vs. ExPASy TrEMBL
Match: A0A6J1EWP2 (sec-independent protein translocase protein TATA, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111439076 PE=3 SV=1)

HSP 1 Score: 287 bits (735), Expect = 1.14e-97
Identity = 155/157 (98.73%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRKT 60
           MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRKT
Sbjct: 1   MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRKT 60

Query: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120
           MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES
Sbjct: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120

Query: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 157
           ELKKEPESIGETAVEKP S+DDEEKQDLKVSNQKESV
Sbjct: 121 ELKKEPESIGETAVEKPASIDDEEKQDLKVSNQKESV 157

[Close]

BLAST of Cp4.1LG04g01840 vs. ExPASy TrEMBL
Match: A0A6J1HYU6 (sec-independent protein translocase protein TATA, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111468153 PE=3 SV=1)

HSP 1 Score: 283 bits (725), Expect = 3.82e-96
Identity = 154/157 (98.09%), Postives = 154/157 (98.09%), Query Frame = 0


Query: 1   MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRKT 60
           MVISSATLSFTSSIPRLPSFSPP SSSKSSFFANNATANSFNKGDHSHS LLRTTRSRKT
Sbjct: 1   MVISSATLSFTSSIPRLPSFSPPLSSSKSSFFANNATANSFNKGDHSHSSLLRTTRSRKT 60

Query: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120
           MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES
Sbjct: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120

Query: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 157
           ELKKEPESIGETAVEKPTSVDDEEKQDLK SNQKESV
Sbjct: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKASNQKESV 157

[Close]

BLAST of Cp4.1LG04g01840 vs. ExPASy TrEMBL
Match: A0A0A0LWL1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573670 PE=3 SV=1)

HSP 1 Score: 225 bits (573), Expect = 5.75e-73
Identity = 127/158 (80.38%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 1   MVISSATLSFTSSIPRLP-SFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRK 60
           MVISS TLSFTSSIP+LP S SP FSSSKS+FFANNAT + F  GDH+HS LLR T  R 
Sbjct: 1   MVISSPTLSFTSSIPKLPPSLSPSFSSSKSAFFANNATTSFFTYGDHNHSSLLRLTSFRT 60

Query: 61  TMDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120
           T    HKG TCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE
Sbjct: 61  TTKTTHKGFTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120

Query: 121 SELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 157
           SELKKEPE   ET+VEKPTS + EE+QDLKVSNQKE+V
Sbjct: 121 SELKKEPEPTEETSVEKPTSTEAEERQDLKVSNQKETV 158

[Close]

BLAST of Cp4.1LG04g01840 vs. ExPASy TrEMBL
Match: A0A1S3BPB0 (sec-independent protein translocase protein TATA, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492233 PE=3 SV=1)

HSP 1 Score: 224 bits (572), Expect = 8.16e-73
Identity = 126/158 (79.75%), Postives = 136/158 (86.08%), Query Frame = 0


Query: 1   MVISSATLSFTSSIPRLP-SFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRK 60
           MVIS+ TLSFTSSIP+LP S SP FSSSKS+FFANNAT + F  GDH+HS LLR T  R 
Sbjct: 1   MVISTPTLSFTSSIPKLPPSLSPSFSSSKSAFFANNATVSFFTNGDHNHSSLLRLTSFRT 60

Query: 61  TMDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120
           T    HKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE
Sbjct: 61  TTKTTHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120

Query: 121 SELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 157
           SELKKEPE   ET+VEKPTS + E++QDLKVSNQKE+V
Sbjct: 121 SELKKEPEPTEETSVEKPTSTEAEKRQDLKVSNQKETV 158

[Close]

BLAST of Cp4.1LG04g01840 vs. ExPASy TrEMBL
Match: A0A6J1DX34 (sec-independent protein translocase protein TATA, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111024879 PE=3 SV=1)

HSP 1 Score: 214 bits (545), Expect = 6.43e-69
Identity = 128/158 (81.01%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 1   MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTR-SRK 60
           MVISSATLSFTSS+PR P  SPPFSSSKS+FFAN             H+LLLRTT  +  
Sbjct: 1   MVISSATLSFTSSLPR-PPLSPPFSSSKSAFFAN-------------HALLLRTTTPTTT 60

Query: 61  TMDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120
           T  RAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE
Sbjct: 61  THTRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120

Query: 121 SELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 157
           SELKKEPE+IGETAVEKPTSVD EE+QD+KVSNQKESV
Sbjct: 121 SELKKEPEAIGETAVEKPTSVD-EERQDVKVSNQKESV 143

[Close]

BLAST of Cp4.1LG04g01840 vs. TAIR 10
Match: AT5G28750.1 (Bacterial sec-independent translocation protein mttA/Hcf106 )

HSP 1 Score: 121.3 bits (303), Expect = 6.8e-28
Identity = 90/157 (57.32%), Postives = 105/157 (66.88%), Query Frame = 0


Query: 1   MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRKT 60
           M  S ATL   SS P  P   P  SSS+SSFF+N  T  +     ++ SL+    R R+ 
Sbjct: 1   MATSVATL---SSPP--PVSLPLLSSSRSSFFSNCFTVTT---RPNTRSLVAIGRRIRQE 60

Query: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120
             R  K LTCNALFGLGVPEL VIAGVAAL+FGPKKLPE+GKSIGKTVKSFQQAAKEFES
Sbjct: 61  PTR--KPLTCNALFGLGVPELAVIAGVAALLFGPKKLPEIGKSIGKTVKSFQQAAKEFES 120

Query: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           ELK EPE     + +  TS  +EEK+    S+ KE+V
Sbjct: 121 ELKTEPEESVAESSQVATSNKEEEKKTEVSSSSKENV 147

[Close]

BLAST of Cp4.1LG04g01840 vs. TAIR 10
Match: AT5G52440.1 (Bacterial sec-independent translocation protein mttA/Hcf106 )

HSP 1 Score: 52.8 bits (125), Expect = 3.0e-07
Identity = 28/61 (45.90%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 72  ALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSF-------QQAAKEFESELKK 126
           +LFG+G PE +VI  VA LVFGPK L EV +++GKT+++F       Q  +++F+S L++
Sbjct: 85  SLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRTFQPTIRELQDVSRDFKSTLER 144

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g01840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XH46	2.5e-27	56.49	Sec-independent protein translocase protein TATA, chloroplastic OS=Pisum sativum...	[more]
Q9LKU2	9.6e-27	57.32	Sec-independent protein translocase protein TATA, chloroplastic OS=Arabidopsis t...	[more]
Q9XFJ8	2.1e-21	52.63	Sec-independent protein translocase protein TATA, chloroplastic OS=Zea mays OX=4...	[more]
Q75GK3	7.9e-21	51.85	Sec-independent protein translocase protein TATA, chloroplastic OS=Oryza sativa ...	[more]
Q31RR1	1.8e-12	47.13	Sec-independent protein translocase protein TatA OS=Synechococcus elongatus (str...	[more]

BLAST of Cp4.1LG04g01840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023529222.1	2.87e-98	100.00	sec-independent protein translocase protein TATA, chloroplastic [Cucurbita pepo ...	[more]
XP_022932561.1	2.36e-97	98.73	sec-independent protein translocase protein TATA, chloroplastic [Cucurbita mosch...	[more]
KAG6588320.1	2.75e-96	98.09	Sec-independent protein translocase protein TATA, chloroplastic, partial [Cucurb...	[more]
KAG7020882.1	3.91e-96	98.09	Sec-independent protein translocase protein TATA, chloroplastic, partial [Cucurb...	[more]
XP_022969040.1	7.89e-96	98.09	sec-independent protein translocase protein TATA, chloroplastic [Cucurbita maxim...	[more]

BLAST of Cp4.1LG04g01840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EWP2	1.14e-97	98.73	sec-independent protein translocase protein TATA, chloroplastic OS=Cucurbita mos...	[more]
A0A6J1HYU6	3.82e-96	98.09	sec-independent protein translocase protein TATA, chloroplastic OS=Cucurbita max...	[more]
A0A0A0LWL1	5.75e-73	80.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573670 PE=3 SV=1	[more]
A0A1S3BPB0	8.16e-73	79.75	sec-independent protein translocase protein TATA, chloroplastic OS=Cucumis melo ...	[more]
A0A6J1DX34	6.43e-69	81.01	sec-independent protein translocase protein TATA, chloroplastic OS=Momordica cha...	[more]

BLAST of Cp4.1LG04g01840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G28750.1	6.8e-28	57.32	Bacterial sec-independent translocation protein mttA/Hcf106	[more]
AT5G52440.1	3.0e-07	45.90	Bacterial sec-independent translocation protein mttA/Hcf106	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01506	TATBPROTEIN	coord: 73..93 score: 35.53 coord: 93..112 score: 27.65
None	No IPR available	GENE3D	1.20.5.3310		coord: 75..126 e-value: 1.4E-18 score: 68.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..157
None	No IPR available	PANTHER	PTHR33162:SF6	BNAC07G27450D PROTEIN	coord: 15..152
None	No IPR available	PANTHER	PTHR33162	SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATA, CHLOROPLASTIC	coord: 15..152
IPR006312	Sec-independent protein translocase protein TatA/E	TIGRFAM	TIGR01411	TIGR01411	coord: 75..121 e-value: 5.0E-20 score: 68.8
IPR006312	Sec-independent protein translocase protein TatA/E	HAMAP	MF_00236	TatA_E	coord: 73..156 score: 18.540413
IPR003369	Sec-independent protein translocase protein TatA/B/E	PFAM	PF02416	TatA_B_E	coord: 76..125 e-value: 8.0E-19 score: 66.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g01840.1	Cp4.1LG04g01840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051260	protein homooligomerization
biological_process	GO:0043953	protein transport by the Tat complex
biological_process	GO:0032594	protein transport within lipid bilayer
biological_process	GO:0015031	protein transport
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0033281	TAT protein transport complex