Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCCCTTTCTGAAGCAGCCTCTTCATCTTCATCGTCTGTTGAATTCGTGTTTCACGATGATTTAGAGTATGAATTTGTTGAAGAAGTCGAACGCCTTTCGAACTGGGAGTTGCTCGATGCTTCAGATGCGGATTTCGAAATAGATGGAAATGGAGATGAGCAGGAAGAAGAAGAAGAAGAAGAAGGGGAAAATTGCAGCGTTGATGTCCGAGTTCCTAAGGATCTTCGAGGGAAGCGTGTTGTAGCGATGCCGATTTCTTCTCTTGTTGAGGAGCGAATCGATGGTCCCTTCGATGATGTTTATTTGCTTCAGAATCAGGTGGAAGACGGTTTCGCGTACGGCTGCAACGATCTGGAGGAGGATGAATCCGACGACGATGTTGTTGATGATGATGATGACGGCGATGAGTGCGATTTGGACGACGAACTCGTTCCGTGGTCCGTTAGTGACAAACTCGGACGGCAGAGGATGAGGAAATTAGGGAAAAGAGGTTTTACGAGGATGTATAACTCGAAGAGATCGCCGTTTTTGTTCACCAAGCCTGGATGTGTCCGCGGCAAGCACGGACTCGGATTGAAGCACAGTTCTTAG
mRNA sequence
ATGGAATCCCTTTCTGAAGCAGCCTCTTCATCTTCATCGTCTGTTGAATTCGTGTTTCACGATGATTTAGAGTATGAATTTGTTGAAGAAGTCGAACGCCTTTCGAACTGGGAGTTGCTCGATGCTTCAGATGCGGATTTCGAAATAGATGGAAATGGAGATGAGCAGGAAGAAGAAGAAGAAGAAGAAGGGGAAAATTGCAGCGTTGATGTCCGAGTTCCTAAGGATCTTCGAGGGAAGCGTGTTGTAGCGATGCCGATTTCTTCTCTTGTTGAGGAGCGAATCGATGGGAAAAGAGGTTTTACGAGGATGTATAACTCGAAGAGATCGCCGTTTTTGTTCACCAAGCCTGGATGTGTCCGCGGCAAGCACGGACTCGGATTGAAGCACAGTTCTTAG
Coding sequence (CDS)
ATGGAATCCCTTTCTGAAGCAGCCTCTTCATCTTCATCGTCTGTTGAATTCGTGTTTCACGATGATTTAGAGTATGAATTTGTTGAAGAAGTCGAACGCCTTTCGAACTGGGAGTTGCTCGATGCTTCAGATGCGGATTTCGAAATAGATGGAAATGGAGATGAGCAGGAAGAAGAAGAAGAAGAAGAAGGGGAAAATTGCAGCGTTGATGTCCGAGTTCCTAAGGATCTTCGAGGGAAGCGTGTTGTAGCGATGCCGATTTCTTCTCTTGTTGAGGAGCGAATCGATGGGAAAAGAGGTTTTACGAGGATGTATAACTCGAAGAGATCGCCGTTTTTGTTCACCAAGCCTGGATGTGTCCGCGGCAAGCACGGACTCGGATTGAAGCACAGTTCTTAG
Protein sequence
MESLSEAASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEEEEEGENCSVDVRVPKDLRGKRVVAMPISSLVEERIDGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSS
Homology
BLAST of Cp4.1LG04g01110 vs. NCBI nr
Match:
XP_023529313.1 (NAD-dependent protein deacetylase HST1-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 227 bits (579), Expect = 2.00e-73
Identity = 132/198 (66.67%), Postives = 132/198 (66.67%), Query Frame = 0
Query: 1 MESLSEAASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEE 60
MESLSEAASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEE
Sbjct: 1 MESLSEAASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEE 60
Query: 61 EEEGENCSVDVRVPKDLRGKRVVAMPISSLVEERIDG----------------------- 120
EEEGENCSVDVRVPKDLRGKRVVAMPISSLVEERIDG
Sbjct: 61 EEEGENCSVDVRVPKDLRGKRVVAMPISSLVEERIDGPFDDVYLLQNQVEDGFAYGCNDL 120
Query: 121 -------------------------------------------KRGFTRMYNSKRSPFLF 132
KRGFTRMYNSKRSPFLF
Sbjct: 121 EEDESDDDVVDDDDDGDECDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLF 180
BLAST of Cp4.1LG04g01110 vs. NCBI nr
Match:
XP_022934009.1 (NAD-dependent protein deacetylase HST1-like [Cucurbita moschata])
HSP 1 Score: 214 bits (544), Expect = 4.51e-68
Identity = 128/200 (64.00%), Postives = 130/200 (65.00%), Query Frame = 0
Query: 1 MESLSEAASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEE 60
ME+ S AASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEE
Sbjct: 1 MEAPSGAASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEE 60
Query: 61 EEE--GENCSVDVRVPKDLRGKRVVAMPISSLVEERIDG--------------------- 120
EEE GE+CSVDVRVPKDLRGKRVVAMPISSLVEERIDG
Sbjct: 61 EEEEEGESCSVDVRVPKDLRGKRVVAMPISSLVEERIDGPFDDVYLLQNQVENGFAYGCN 120
Query: 121 ---------------------------------------------KRGFTRMYNSKRSPF 132
KRGFTRMYNSKRSPF
Sbjct: 121 DLEEDESDDDVVDDDDDGDECDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPF 180
BLAST of Cp4.1LG04g01110 vs. NCBI nr
Match:
KAG6588426.1 (hypothetical protein SDJN03_16991, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 213 bits (541), Expect = 1.78e-67
Identity = 129/210 (61.43%), Postives = 131/210 (62.38%), Query Frame = 0
Query: 1 MESLSEAASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEE 60
ME+LS AASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEE
Sbjct: 1 MEALSGAASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEE 60
Query: 61 EEE------------GENCSVDVRVPKDLRGKRVVAMPISSLVEERIDG----------- 120
EEE GE+CSVDVRVPKDLRGKRVVAMPISSLVEERIDG
Sbjct: 61 EEEEEEEEEEEEEEEGESCSVDVRVPKDLRGKRVVAMPISSLVEERIDGPFDDVYLLQNQ 120
Query: 121 -------------------------------------------------------KRGFT 132
KRGFT
Sbjct: 121 VENGFAYGCNDLEEDESDDDVVDDDDDGDECDLDDELVPWSVSDKLGRQRMRKLGKRGFT 180
BLAST of Cp4.1LG04g01110 vs. NCBI nr
Match:
XP_022971487.1 (NAD-dependent protein deacetylase HST1-like [Cucurbita maxima])
HSP 1 Score: 212 bits (539), Expect = 2.60e-67
Identity = 127/200 (63.50%), Postives = 129/200 (64.50%), Query Frame = 0
Query: 1 MESLSEAASSSSSS--VEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEE 60
ME+LS AASSSSSS VEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDE+EE
Sbjct: 1 MEALSGAASSSSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEREE 60
Query: 61 EEEEEGENCSVDVRVPKDLRGKRVVAMPISSLVEERIDG--------------------- 120
EEEEE ENCSVDV VPKDLRGKRVVAMPISSLVEERIDG
Sbjct: 61 EEEEEAENCSVDVLVPKDLRGKRVVAMPISSLVEERIDGPFDDVYLLQNQVEDGFAYGCN 120
Query: 121 ---------------------------------------------KRGFTRMYNSKRSPF 132
KRGFTRMYNSKRSPF
Sbjct: 121 NLEEDESDDDVVDDDDDGDECDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPF 180
BLAST of Cp4.1LG04g01110 vs. NCBI nr
Match:
KAG7022273.1 (hypothetical protein SDJN02_16004, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 150 bits (380), Expect = 1.38e-43
Identity = 99/198 (50.00%), Postives = 101/198 (51.01%), Query Frame = 0
Query: 1 MESLSEAASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEE 60
ME+LS AASSSSSSVEFVFHDDLEYEFVEEVERLSNW+
Sbjct: 1 MEALSGAASSSSSSVEFVFHDDLEYEFVEEVERLSNWD---------------------- 60
Query: 61 EEEGENCSVDVRVPKDLRGKRVVAMPISSLVEERIDG----------------------- 120
VDVRVPKDLRGKRVVAMPISSLVEERIDG
Sbjct: 61 --------VDVRVPKDLRGKRVVAMPISSLVEERIDGPFDDVYLLQNQVENGFAYGCNDL 120
Query: 121 -------------------------------------------KRGFTRMYNSKRSPFLF 132
KRGFTRMYNSKRSPFLF
Sbjct: 121 EEDESDDDVVDDDDDGDECDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLF 168
BLAST of Cp4.1LG04g01110 vs. ExPASy TrEMBL
Match:
A0A6J1F1D0 (NAD-dependent protein deacetylase HST1-like OS=Cucurbita moschata OX=3662 GN=LOC111441242 PE=4 SV=1)
HSP 1 Score: 214 bits (544), Expect = 2.18e-68
Identity = 128/200 (64.00%), Postives = 130/200 (65.00%), Query Frame = 0
Query: 1 MESLSEAASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEE 60
ME+ S AASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEE
Sbjct: 1 MEAPSGAASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEE 60
Query: 61 EEE--GENCSVDVRVPKDLRGKRVVAMPISSLVEERIDG--------------------- 120
EEE GE+CSVDVRVPKDLRGKRVVAMPISSLVEERIDG
Sbjct: 61 EEEEEGESCSVDVRVPKDLRGKRVVAMPISSLVEERIDGPFDDVYLLQNQVENGFAYGCN 120
Query: 121 ---------------------------------------------KRGFTRMYNSKRSPF 132
KRGFTRMYNSKRSPF
Sbjct: 121 DLEEDESDDDVVDDDDDGDECDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPF 180
BLAST of Cp4.1LG04g01110 vs. ExPASy TrEMBL
Match:
A0A6J1I229 (NAD-dependent protein deacetylase HST1-like OS=Cucurbita maxima OX=3661 GN=LOC111470188 PE=4 SV=1)
HSP 1 Score: 212 bits (539), Expect = 1.26e-67
Identity = 127/200 (63.50%), Postives = 129/200 (64.50%), Query Frame = 0
Query: 1 MESLSEAASSSSSS--VEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEE 60
ME+LS AASSSSSS VEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDE+EE
Sbjct: 1 MEALSGAASSSSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEREE 60
Query: 61 EEEEEGENCSVDVRVPKDLRGKRVVAMPISSLVEERIDG--------------------- 120
EEEEE ENCSVDV VPKDLRGKRVVAMPISSLVEERIDG
Sbjct: 61 EEEEEAENCSVDVLVPKDLRGKRVVAMPISSLVEERIDGPFDDVYLLQNQVEDGFAYGCN 120
Query: 121 ---------------------------------------------KRGFTRMYNSKRSPF 132
KRGFTRMYNSKRSPF
Sbjct: 121 NLEEDESDDDVVDDDDDGDECDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPF 180
BLAST of Cp4.1LG04g01110 vs. ExPASy TrEMBL
Match:
A0A0A0K4F3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004150 PE=4 SV=1)
HSP 1 Score: 149 bits (377), Expect = 3.38e-43
Identity = 96/193 (49.74%), Postives = 111/193 (57.51%), Query Frame = 0
Query: 1 MESLSEAASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEE 60
ME++S ++SSSSSS+EFVF+DD EYEFVE++ERLSNWELLDA DAD E+ GNG E
Sbjct: 1 MEAISGSSSSSSSSMEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMGGNGGE----- 60
Query: 61 EEEGENCSVDVRVPKDLRG--KRVVAMPISSLVEERID---------------------- 120
E+G NCSVD V +DLR V+A+PIS LVE+RID
Sbjct: 61 -EQGGNCSVDDNVSQDLREMISPVLAVPIS-LVEDRIDCSLEDAYFLHNQAEDGFAYGYN 120
Query: 121 --------------------------------------GKRGFTRMYNSKRSPFLFTKPG 131
GKRGFT+MYNSKRSPFLFTKPG
Sbjct: 121 DAEEEDEVDDDEDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPG 180
BLAST of Cp4.1LG04g01110 vs. ExPASy TrEMBL
Match:
A0A1S3BJG2 (uncharacterized protein LOC103490356 OS=Cucumis melo OX=3656 GN=LOC103490356 PE=4 SV=1)
HSP 1 Score: 144 bits (364), Expect = 3.86e-41
Identity = 95/192 (49.48%), Postives = 108/192 (56.25%), Query Frame = 0
Query: 3 SLSEAASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEEEE 62
S S ++SSSSSS+EFVF+DD EYEFVE++ERLSNWELLDA DAD E+ GNG E E
Sbjct: 9 SSSSSSSSSSSSMEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMGGNGGE------E 68
Query: 63 EGENCSVDVRVPKDLRG--KRVVAMPISSLVEERIDG----------------------- 122
+GEN SVD V +DLR V+A+PIS LVE+RIDG
Sbjct: 69 QGENYSVDDNVSQDLREMISPVLAVPIS-LVEDRIDGSLEDACFLHNQAEDGFAYGYDDA 128
Query: 123 --------------------------------------KRGFTRMYNSKRSPFLFTKPGC 131
KRGFT+MYNSKRSPFLFTKPGC
Sbjct: 129 EEEDEVDDEEEDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGC 188
BLAST of Cp4.1LG04g01110 vs. ExPASy TrEMBL
Match:
A0A5A7SRG7 (Nuclear polyadenylated RNA-binding protein 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00680 PE=4 SV=1)
HSP 1 Score: 143 bits (360), Expect = 1.23e-40
Identity = 93/188 (49.47%), Postives = 105/188 (55.85%), Query Frame = 0
Query: 7 AASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEEEEEGEN 66
+ SSSSSS+EFVF+DD EYEFVE++ERLSNWELLDA DAD E+ GNG E E+GEN
Sbjct: 5 SGSSSSSSMEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMGGNGGE------EQGEN 64
Query: 67 CSVDVRVPKDLRG--KRVVAMPISSLVEERIDG--------------------------- 126
SVD V +DLR V+A+PIS LVE+RIDG
Sbjct: 65 YSVDDNVSQDLREMISPVLAVPIS-LVEDRIDGSLEDACFLHNQAEDGFAYGYDDAEEED 124
Query: 127 ----------------------------------KRGFTRMYNSKRSPFLFTKPGCVRGK 131
KRGFT+MYNSKRSPFLFTKPGCVRGK
Sbjct: 125 EVDDDEEDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGK 184
BLAST of Cp4.1LG04g01110 vs. TAIR 10
Match:
AT4G34630.1 (unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). )
HSP 1 Score: 43.1 bits (100), Expect = 2.0e-04
Identity = 32/80 (40.00%), Postives = 43/80 (53.75%), Query Frame = 0
Query: 50 DGNGDEQEEEEEEEGENCSVDVRVPKDLRGKRVVAMPISSLVEERIDGKRGFTRMYNSKR 109
D D+ EE+ E + + VP+ + K+V + L GKR ++Y SK
Sbjct: 126 DSVNDDGEEDREYDDSYDLDEELVPRSV-SKKVGRQRMRKL------GKRAIAKVYASKI 185
Query: 110 SPFLFTKPGCVRGKHGLGLK 130
SPFL KPG VRGKHGLG+K
Sbjct: 186 SPFL--KPGIVRGKHGLGMK 196
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
XP_023529313.1 | 2.00e-73 | 66.67 | NAD-dependent protein deacetylase HST1-like [Cucurbita pepo subsp. pepo] | [more] |
XP_022934009.1 | 4.51e-68 | 64.00 | NAD-dependent protein deacetylase HST1-like [Cucurbita moschata] | [more] |
KAG6588426.1 | 1.78e-67 | 61.43 | hypothetical protein SDJN03_16991, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022971487.1 | 2.60e-67 | 63.50 | NAD-dependent protein deacetylase HST1-like [Cucurbita maxima] | [more] |
KAG7022273.1 | 1.38e-43 | 50.00 | hypothetical protein SDJN02_16004, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1F1D0 | 2.18e-68 | 64.00 | NAD-dependent protein deacetylase HST1-like OS=Cucurbita moschata OX=3662 GN=LOC... | [more] |
A0A6J1I229 | 1.26e-67 | 63.50 | NAD-dependent protein deacetylase HST1-like OS=Cucurbita maxima OX=3661 GN=LOC11... | [more] |
A0A0A0K4F3 | 3.38e-43 | 49.74 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004150 PE=4 SV=1 | [more] |
A0A1S3BJG2 | 3.86e-41 | 49.48 | uncharacterized protein LOC103490356 OS=Cucumis melo OX=3656 GN=LOC103490356 PE=... | [more] |
A0A5A7SRG7 | 1.23e-40 | 49.47 | Nuclear polyadenylated RNA-binding protein 3-like OS=Cucumis melo var. makuwa OX... | [more] |
Match Name | E-value | Identity | Description | |
AT4G34630.1 | 2.0e-04 | 40.00 | unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bac... | [more] |