Cp4.1LG04g01110 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG04g01110
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionNAD-dependent protein deacetylase HST1-like
LocationCp4.1LG04: 989068 .. 989664 (+)
RNA-Seq ExpressionCp4.1LG04g01110
SyntenyCp4.1LG04g01110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCCCTTTCTGAAGCAGCCTCTTCATCTTCATCGTCTGTTGAATTCGTGTTTCACGATGATTTAGAGTATGAATTTGTTGAAGAAGTCGAACGCCTTTCGAACTGGGAGTTGCTCGATGCTTCAGATGCGGATTTCGAAATAGATGGAAATGGAGATGAGCAGGAAGAAGAAGAAGAAGAAGAAGGGGAAAATTGCAGCGTTGATGTCCGAGTTCCTAAGGATCTTCGAGGGAAGCGTGTTGTAGCGATGCCGATTTCTTCTCTTGTTGAGGAGCGAATCGATGGTCCCTTCGATGATGTTTATTTGCTTCAGAATCAGGTGGAAGACGGTTTCGCGTACGGCTGCAACGATCTGGAGGAGGATGAATCCGACGACGATGTTGTTGATGATGATGATGACGGCGATGAGTGCGATTTGGACGACGAACTCGTTCCGTGGTCCGTTAGTGACAAACTCGGACGGCAGAGGATGAGGAAATTAGGGAAAAGAGGTTTTACGAGGATGTATAACTCGAAGAGATCGCCGTTTTTGTTCACCAAGCCTGGATGTGTCCGCGGCAAGCACGGACTCGGATTGAAGCACAGTTCTTAG

mRNA sequence

ATGGAATCCCTTTCTGAAGCAGCCTCTTCATCTTCATCGTCTGTTGAATTCGTGTTTCACGATGATTTAGAGTATGAATTTGTTGAAGAAGTCGAACGCCTTTCGAACTGGGAGTTGCTCGATGCTTCAGATGCGGATTTCGAAATAGATGGAAATGGAGATGAGCAGGAAGAAGAAGAAGAAGAAGAAGGGGAAAATTGCAGCGTTGATGTCCGAGTTCCTAAGGATCTTCGAGGGAAGCGTGTTGTAGCGATGCCGATTTCTTCTCTTGTTGAGGAGCGAATCGATGGGAAAAGAGGTTTTACGAGGATGTATAACTCGAAGAGATCGCCGTTTTTGTTCACCAAGCCTGGATGTGTCCGCGGCAAGCACGGACTCGGATTGAAGCACAGTTCTTAG

Coding sequence (CDS)

ATGGAATCCCTTTCTGAAGCAGCCTCTTCATCTTCATCGTCTGTTGAATTCGTGTTTCACGATGATTTAGAGTATGAATTTGTTGAAGAAGTCGAACGCCTTTCGAACTGGGAGTTGCTCGATGCTTCAGATGCGGATTTCGAAATAGATGGAAATGGAGATGAGCAGGAAGAAGAAGAAGAAGAAGAAGGGGAAAATTGCAGCGTTGATGTCCGAGTTCCTAAGGATCTTCGAGGGAAGCGTGTTGTAGCGATGCCGATTTCTTCTCTTGTTGAGGAGCGAATCGATGGGAAAAGAGGTTTTACGAGGATGTATAACTCGAAGAGATCGCCGTTTTTGTTCACCAAGCCTGGATGTGTCCGCGGCAAGCACGGACTCGGATTGAAGCACAGTTCTTAG

Protein sequence

MESLSEAASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEEEEEGENCSVDVRVPKDLRGKRVVAMPISSLVEERIDGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSS
Homology
BLAST of Cp4.1LG04g01110 vs. NCBI nr
Match: XP_023529313.1 (NAD-dependent protein deacetylase HST1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 227 bits (579), Expect = 2.00e-73
Identity = 132/198 (66.67%), Postives = 132/198 (66.67%), Query Frame = 0

Query: 1   MESLSEAASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEE 60
           MESLSEAASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEE
Sbjct: 1   MESLSEAASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEE 60

Query: 61  EEEGENCSVDVRVPKDLRGKRVVAMPISSLVEERIDG----------------------- 120
           EEEGENCSVDVRVPKDLRGKRVVAMPISSLVEERIDG                       
Sbjct: 61  EEEGENCSVDVRVPKDLRGKRVVAMPISSLVEERIDGPFDDVYLLQNQVEDGFAYGCNDL 120

Query: 121 -------------------------------------------KRGFTRMYNSKRSPFLF 132
                                                      KRGFTRMYNSKRSPFLF
Sbjct: 121 EEDESDDDVVDDDDDGDECDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLF 180

BLAST of Cp4.1LG04g01110 vs. NCBI nr
Match: XP_022934009.1 (NAD-dependent protein deacetylase HST1-like [Cucurbita moschata])

HSP 1 Score: 214 bits (544), Expect = 4.51e-68
Identity = 128/200 (64.00%), Postives = 130/200 (65.00%), Query Frame = 0

Query: 1   MESLSEAASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEE 60
           ME+ S AASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEE
Sbjct: 1   MEAPSGAASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEE 60

Query: 61  EEE--GENCSVDVRVPKDLRGKRVVAMPISSLVEERIDG--------------------- 120
           EEE  GE+CSVDVRVPKDLRGKRVVAMPISSLVEERIDG                     
Sbjct: 61  EEEEEGESCSVDVRVPKDLRGKRVVAMPISSLVEERIDGPFDDVYLLQNQVENGFAYGCN 120

Query: 121 ---------------------------------------------KRGFTRMYNSKRSPF 132
                                                        KRGFTRMYNSKRSPF
Sbjct: 121 DLEEDESDDDVVDDDDDGDECDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPF 180

BLAST of Cp4.1LG04g01110 vs. NCBI nr
Match: KAG6588426.1 (hypothetical protein SDJN03_16991, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213 bits (541), Expect = 1.78e-67
Identity = 129/210 (61.43%), Postives = 131/210 (62.38%), Query Frame = 0

Query: 1   MESLSEAASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEE 60
           ME+LS AASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEE
Sbjct: 1   MEALSGAASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEE 60

Query: 61  EEE------------GENCSVDVRVPKDLRGKRVVAMPISSLVEERIDG----------- 120
           EEE            GE+CSVDVRVPKDLRGKRVVAMPISSLVEERIDG           
Sbjct: 61  EEEEEEEEEEEEEEEGESCSVDVRVPKDLRGKRVVAMPISSLVEERIDGPFDDVYLLQNQ 120

Query: 121 -------------------------------------------------------KRGFT 132
                                                                  KRGFT
Sbjct: 121 VENGFAYGCNDLEEDESDDDVVDDDDDGDECDLDDELVPWSVSDKLGRQRMRKLGKRGFT 180

BLAST of Cp4.1LG04g01110 vs. NCBI nr
Match: XP_022971487.1 (NAD-dependent protein deacetylase HST1-like [Cucurbita maxima])

HSP 1 Score: 212 bits (539), Expect = 2.60e-67
Identity = 127/200 (63.50%), Postives = 129/200 (64.50%), Query Frame = 0

Query: 1   MESLSEAASSSSSS--VEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEE 60
           ME+LS AASSSSSS  VEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDE+EE
Sbjct: 1   MEALSGAASSSSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEREE 60

Query: 61  EEEEEGENCSVDVRVPKDLRGKRVVAMPISSLVEERIDG--------------------- 120
           EEEEE ENCSVDV VPKDLRGKRVVAMPISSLVEERIDG                     
Sbjct: 61  EEEEEAENCSVDVLVPKDLRGKRVVAMPISSLVEERIDGPFDDVYLLQNQVEDGFAYGCN 120

Query: 121 ---------------------------------------------KRGFTRMYNSKRSPF 132
                                                        KRGFTRMYNSKRSPF
Sbjct: 121 NLEEDESDDDVVDDDDDGDECDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPF 180

BLAST of Cp4.1LG04g01110 vs. NCBI nr
Match: KAG7022273.1 (hypothetical protein SDJN02_16004, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 150 bits (380), Expect = 1.38e-43
Identity = 99/198 (50.00%), Postives = 101/198 (51.01%), Query Frame = 0

Query: 1   MESLSEAASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEE 60
           ME+LS AASSSSSSVEFVFHDDLEYEFVEEVERLSNW+                      
Sbjct: 1   MEALSGAASSSSSSVEFVFHDDLEYEFVEEVERLSNWD---------------------- 60

Query: 61  EEEGENCSVDVRVPKDLRGKRVVAMPISSLVEERIDG----------------------- 120
                   VDVRVPKDLRGKRVVAMPISSLVEERIDG                       
Sbjct: 61  --------VDVRVPKDLRGKRVVAMPISSLVEERIDGPFDDVYLLQNQVENGFAYGCNDL 120

Query: 121 -------------------------------------------KRGFTRMYNSKRSPFLF 132
                                                      KRGFTRMYNSKRSPFLF
Sbjct: 121 EEDESDDDVVDDDDDGDECDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLF 168

BLAST of Cp4.1LG04g01110 vs. ExPASy TrEMBL
Match: A0A6J1F1D0 (NAD-dependent protein deacetylase HST1-like OS=Cucurbita moschata OX=3662 GN=LOC111441242 PE=4 SV=1)

HSP 1 Score: 214 bits (544), Expect = 2.18e-68
Identity = 128/200 (64.00%), Postives = 130/200 (65.00%), Query Frame = 0

Query: 1   MESLSEAASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEE 60
           ME+ S AASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEE
Sbjct: 1   MEAPSGAASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEE 60

Query: 61  EEE--GENCSVDVRVPKDLRGKRVVAMPISSLVEERIDG--------------------- 120
           EEE  GE+CSVDVRVPKDLRGKRVVAMPISSLVEERIDG                     
Sbjct: 61  EEEEEGESCSVDVRVPKDLRGKRVVAMPISSLVEERIDGPFDDVYLLQNQVENGFAYGCN 120

Query: 121 ---------------------------------------------KRGFTRMYNSKRSPF 132
                                                        KRGFTRMYNSKRSPF
Sbjct: 121 DLEEDESDDDVVDDDDDGDECDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPF 180

BLAST of Cp4.1LG04g01110 vs. ExPASy TrEMBL
Match: A0A6J1I229 (NAD-dependent protein deacetylase HST1-like OS=Cucurbita maxima OX=3661 GN=LOC111470188 PE=4 SV=1)

HSP 1 Score: 212 bits (539), Expect = 1.26e-67
Identity = 127/200 (63.50%), Postives = 129/200 (64.50%), Query Frame = 0

Query: 1   MESLSEAASSSSSS--VEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEE 60
           ME+LS AASSSSSS  VEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDE+EE
Sbjct: 1   MEALSGAASSSSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEREE 60

Query: 61  EEEEEGENCSVDVRVPKDLRGKRVVAMPISSLVEERIDG--------------------- 120
           EEEEE ENCSVDV VPKDLRGKRVVAMPISSLVEERIDG                     
Sbjct: 61  EEEEEAENCSVDVLVPKDLRGKRVVAMPISSLVEERIDGPFDDVYLLQNQVEDGFAYGCN 120

Query: 121 ---------------------------------------------KRGFTRMYNSKRSPF 132
                                                        KRGFTRMYNSKRSPF
Sbjct: 121 NLEEDESDDDVVDDDDDGDECDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPF 180

BLAST of Cp4.1LG04g01110 vs. ExPASy TrEMBL
Match: A0A0A0K4F3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004150 PE=4 SV=1)

HSP 1 Score: 149 bits (377), Expect = 3.38e-43
Identity = 96/193 (49.74%), Postives = 111/193 (57.51%), Query Frame = 0

Query: 1   MESLSEAASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEE 60
           ME++S ++SSSSSS+EFVF+DD EYEFVE++ERLSNWELLDA DAD E+ GNG E     
Sbjct: 1   MEAISGSSSSSSSSMEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMGGNGGE----- 60

Query: 61  EEEGENCSVDVRVPKDLRG--KRVVAMPISSLVEERID---------------------- 120
            E+G NCSVD  V +DLR     V+A+PIS LVE+RID                      
Sbjct: 61  -EQGGNCSVDDNVSQDLREMISPVLAVPIS-LVEDRIDCSLEDAYFLHNQAEDGFAYGYN 120

Query: 121 --------------------------------------GKRGFTRMYNSKRSPFLFTKPG 131
                                                 GKRGFT+MYNSKRSPFLFTKPG
Sbjct: 121 DAEEEDEVDDDEDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPG 180

BLAST of Cp4.1LG04g01110 vs. ExPASy TrEMBL
Match: A0A1S3BJG2 (uncharacterized protein LOC103490356 OS=Cucumis melo OX=3656 GN=LOC103490356 PE=4 SV=1)

HSP 1 Score: 144 bits (364), Expect = 3.86e-41
Identity = 95/192 (49.48%), Postives = 108/192 (56.25%), Query Frame = 0

Query: 3   SLSEAASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEEEE 62
           S S ++SSSSSS+EFVF+DD EYEFVE++ERLSNWELLDA DAD E+ GNG E      E
Sbjct: 9   SSSSSSSSSSSSMEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMGGNGGE------E 68

Query: 63  EGENCSVDVRVPKDLRG--KRVVAMPISSLVEERIDG----------------------- 122
           +GEN SVD  V +DLR     V+A+PIS LVE+RIDG                       
Sbjct: 69  QGENYSVDDNVSQDLREMISPVLAVPIS-LVEDRIDGSLEDACFLHNQAEDGFAYGYDDA 128

Query: 123 --------------------------------------KRGFTRMYNSKRSPFLFTKPGC 131
                                                 KRGFT+MYNSKRSPFLFTKPGC
Sbjct: 129 EEEDEVDDEEEDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGC 188

BLAST of Cp4.1LG04g01110 vs. ExPASy TrEMBL
Match: A0A5A7SRG7 (Nuclear polyadenylated RNA-binding protein 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00680 PE=4 SV=1)

HSP 1 Score: 143 bits (360), Expect = 1.23e-40
Identity = 93/188 (49.47%), Postives = 105/188 (55.85%), Query Frame = 0

Query: 7   AASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEEEEEGEN 66
           + SSSSSS+EFVF+DD EYEFVE++ERLSNWELLDA DAD E+ GNG E      E+GEN
Sbjct: 5   SGSSSSSSMEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMGGNGGE------EQGEN 64

Query: 67  CSVDVRVPKDLRG--KRVVAMPISSLVEERIDG--------------------------- 126
            SVD  V +DLR     V+A+PIS LVE+RIDG                           
Sbjct: 65  YSVDDNVSQDLREMISPVLAVPIS-LVEDRIDGSLEDACFLHNQAEDGFAYGYDDAEEED 124

Query: 127 ----------------------------------KRGFTRMYNSKRSPFLFTKPGCVRGK 131
                                             KRGFT+MYNSKRSPFLFTKPGCVRGK
Sbjct: 125 EVDDDEEDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGK 184

BLAST of Cp4.1LG04g01110 vs. TAIR 10
Match: AT4G34630.1 (unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 2.0e-04
Identity = 32/80 (40.00%), Postives = 43/80 (53.75%), Query Frame = 0

Query: 50  DGNGDEQEEEEEEEGENCSVDVRVPKDLRGKRVVAMPISSLVEERIDGKRGFTRMYNSKR 109
           D   D+ EE+ E +      +  VP+ +  K+V    +  L      GKR   ++Y SK 
Sbjct: 126 DSVNDDGEEDREYDDSYDLDEELVPRSV-SKKVGRQRMRKL------GKRAIAKVYASKI 185

Query: 110 SPFLFTKPGCVRGKHGLGLK 130
           SPFL  KPG VRGKHGLG+K
Sbjct: 186 SPFL--KPGIVRGKHGLGMK 196

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_023529313.12.00e-7366.67NAD-dependent protein deacetylase HST1-like [Cucurbita pepo subsp. pepo][more]
XP_022934009.14.51e-6864.00NAD-dependent protein deacetylase HST1-like [Cucurbita moschata][more]
KAG6588426.11.78e-6761.43hypothetical protein SDJN03_16991, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022971487.12.60e-6763.50NAD-dependent protein deacetylase HST1-like [Cucurbita maxima][more]
KAG7022273.11.38e-4350.00hypothetical protein SDJN02_16004, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
A0A6J1F1D02.18e-6864.00NAD-dependent protein deacetylase HST1-like OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A6J1I2291.26e-6763.50NAD-dependent protein deacetylase HST1-like OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A0A0K4F33.38e-4349.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004150 PE=4 SV=1[more]
A0A1S3BJG23.86e-4149.48uncharacterized protein LOC103490356 OS=Cucumis melo OX=3656 GN=LOC103490356 PE=... [more]
A0A5A7SRG71.23e-4049.47Nuclear polyadenylated RNA-binding protein 3-like OS=Cucumis melo var. makuwa OX... [more]
Match NameE-valueIdentityDescription
AT4G34630.12.0e-0440.00unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..67
NoneNo IPR availablePANTHERPTHR48213VID27-LIKE PROTEINcoord: 53..131

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g01110.1Cp4.1LG04g01110.1mRNA