Cp4.1LG04g00650 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG04g00650
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionProtein indeterminate-domain 9
LocationCp4.1LG04: 1514294 .. 1514524 (+)
RNA-Seq ExpressionCp4.1LG04g00650
SyntenyCp4.1LG04g00650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAACAAGGGATTTCAAAGAGACCAGAACTTGCAGCTACACAGGCGAGGCCACAACCTGCCATGGAAGCTGAAGCAACGGACGAGCGGGAGCGACACGAGGAGGAGGCGGGTGTACGTATGTCCAGAAACGTCGTGCGTCCACCACAACCCAGCGAGAGCGCTCGGAGACCTCACCGGAATCAAGAAGCACTTCAGCAGAAAACATGGGGAGAAGAATTGGAAGTGTGA

mRNA sequence

ATGCAACAAGGGATTTCAAAGAGACCAGAACTTGCAGCTACACAGGCGAGGCCACAACCTGCCATGGAAGCTGAAGCAACGGACGAGCGGGAGCGACACGAGGAGGAGGCGGGTGTACGTATGTCCAGAAACGTCGTGCGTCCACCACAACCCAGCGAGAGCGCTCGGAGACCTCACCGGAATCAAGAAGCACTTCAGCAGAAAACATGGGGAGAAGAATTGGAAGTGTGA

Coding sequence (CDS)

ATGCAACAAGGGATTTCAAAGAGACCAGAACTTGCAGCTACACAGGCGAGGCCACAACCTGCCATGGAAGCTGAAGCAACGGACGAGCGGGAGCGACACGAGGAGGAGGCGGGTGTACGTATGTCCAGAAACGTCGTGCGTCCACCACAACCCAGCGAGAGCGCTCGGAGACCTCACCGGAATCAAGAAGCACTTCAGCAGAAAACATGGGGAGAAGAATTGGAAGTGTGA

Protein sequence

MQQGISKRPELAATQARPQPAMEAEATDERERHEEEAGVRMSRNVVRPPQPSESARRPHRNQEALQQKTWGEELEV
Homology
BLAST of Cp4.1LG04g00650 vs. NCBI nr
Match: AQK96248.1 (Protein indeterminate-domain 9 [Zea mays])

HSP 1 Score: 62.4 bits (150), Expect = 4.04e-09
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 0

Query: 1   MQQGISKRPELAATQARPQPAMEAEATDERERHEEEAGVRMSRNVVRPPQPSESARRPHR 60
           +++G+   PE AA  ARPQPA+EAEA    +    E GVR+ R VVR P+P   A RPHR
Sbjct: 65  LREGVPAGPEPAAAPARPQPAVEAEAARHGQGGAAEEGVRVPRGVVRAPRPRPRAGRPHR 124

Query: 61  NQEALQQKTWGEELEV 76
           +QEAL  +   EE+EV
Sbjct: 125 HQEALLPQARREEVEV 140

BLAST of Cp4.1LG04g00650 vs. NCBI nr
Match: MBC2900007.1 (hypothetical protein [Triticum aestivum])

HSP 1 Score: 56.6 bits (135), Expect = 7.04e-08
Identity = 39/75 (52.00%), Postives = 47/75 (62.67%), Query Frame = 0

Query: 3   QGISKRPELAATQARPQPAMEAEATDERERH-EEEAGVRMSRNVVRPPQPSESARRPHRN 62
           QG+  RPE AA  ARPQPA+EA A   R R    EAG+R+    VR P+P   A RPHR+
Sbjct: 26  QGLPARPEPAAAPARPQPAVEAAAARRRGRGGAAEAGLRVPGAGVRAPRPPARAGRPHRH 85

Query: 63  QEALQQKTWGEELEV 76
           QEAL  +   EE+EV
Sbjct: 86  QEALLPQARREEVEV 100

BLAST of Cp4.1LG04g00650 vs. NCBI nr
Match: KAG6400821.1 (hypothetical protein SASPL_137664 [Salvia splendens])

HSP 1 Score: 55.5 bits (132), Expect = 1.09e-06
Identity = 38/76 (50.00%), Postives = 48/76 (63.16%), Query Frame = 0

Query: 1   MQQGISKRPELAATQARPQPAMEAEATDERERHEEEAGVRMSRNVVRPPQPSESARRPHR 60
           +QQG+S+  E  A   R Q A+EAEA  E ++ E E G+R+   VV PP P   A RPHR
Sbjct: 74  LQQGLSEGSEPPAPPERAQSAVEAEA--EEQQGESEEGLRLPGAVVPPPPPVPGAGRPHR 133

Query: 61  NQEALQQKTWGEELEV 76
           NQEAL  +T  EE+EV
Sbjct: 134 NQEALLPETRREEVEV 147

BLAST of Cp4.1LG04g00650 vs. ExPASy TrEMBL
Match: A0A453E5I9 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.69e-09
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 0

Query: 1   MQQGISKRPELAATQARPQPAMEAEATDERERHEEEAGVRMSRNVVRPPQPSESARRPHR 60
           ++QG+   PE AA  ARPQP +EA+A  E +R   + GVR+    VRPP+P   ARRPHR
Sbjct: 59  LRQGVPAGPEPAAAPARPQPPLEAQAA-EPQRGGAQEGVRVPGARVRPPRPLPRARRPHR 118

Query: 61  NQEALQQKTWGEELEV 76
           +QEALQ +   EE+EV
Sbjct: 119 HQEALQPQARREEVEV 133

BLAST of Cp4.1LG04g00650 vs. ExPASy TrEMBL
Match: A0A1D6FY24 (Protein indeterminate-domain 9 OS=Zea mays OX=4577 GN=100278452 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.95e-09
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 0

Query: 1   MQQGISKRPELAATQARPQPAMEAEATDERERHEEEAGVRMSRNVVRPPQPSESARRPHR 60
           +++G+   PE AA  ARPQPA+EAEA    +    E GVR+ R VVR P+P   A RPHR
Sbjct: 65  LREGVPAGPEPAAAPARPQPAVEAEAARHGQGGAAEEGVRVPRGVVRAPRPRPRAGRPHR 124

Query: 61  NQEALQQKTWGEELEV 76
           +QEAL  +   EE+EV
Sbjct: 125 HQEALLPQARREEVEV 140

BLAST of Cp4.1LG04g00650 vs. ExPASy TrEMBL
Match: A0A453E5P6 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.06e-09
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 0

Query: 1   MQQGISKRPELAATQARPQPAMEAEATDERERHEEEAGVRMSRNVVRPPQPSESARRPHR 60
           ++QG+   PE AA  ARPQP +EA+A  E +R   + GVR+    VRPP+P   ARRPHR
Sbjct: 63  LRQGVPAGPEPAAAPARPQPPLEAQAA-EPQRGGAQEGVRVPGARVRPPRPLPRARRPHR 122

Query: 61  NQEALQQKTWGEELEV 76
           +QEALQ +   EE+EV
Sbjct: 123 HQEALQPQARREEVEV 137

BLAST of Cp4.1LG04g00650 vs. ExPASy TrEMBL
Match: A0A4D8ZJ09 (Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_038175 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.37e-07
Identity = 38/76 (50.00%), Postives = 48/76 (63.16%), Query Frame = 0

Query: 1   MQQGISKRPELAATQARPQPAMEAEATDERERHEEEAGVRMSRNVVRPPQPSESARRPHR 60
           +QQG+S+  E  A   R Q A+EAEA  E ++ E E G+R+   VV PP P   A RPHR
Sbjct: 74  LQQGLSEGSEPPAPPERAQSAVEAEA--EEQQGESEEGLRLPGAVVPPPPPVPGAGRPHR 133

Query: 61  NQEALQQKTWGEELEV 76
           NQEAL  +T  EE+EV
Sbjct: 134 NQEALLPETRREEVEV 147

BLAST of Cp4.1LG04g00650 vs. ExPASy TrEMBL
Match: A0A453CM67 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 6.24e-06
Identity = 37/76 (48.68%), Postives = 46/76 (60.53%), Query Frame = 0

Query: 1   MQQGISKRPELAATQARPQPAMEAEATDERERHEEEAGVRMSRNVVRPPQPSESARRPHR 60
           +QQG+  R E AA   RPQPA+EAEA +E E     A V +    VRPP+P     RPHR
Sbjct: 26  VQQGVPARAEPAAAPPRPQPAVEAEA-EEPEPGAAPARVPVPGADVRPPRPVPRPGRPHR 85

Query: 61  NQEALQQKTWGEELEV 76
           +QEAL  +   EE+EV
Sbjct: 86  HQEALLPQARREEVEV 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AQK96248.14.04e-0950.00Protein indeterminate-domain 9 [Zea mays][more]
MBC2900007.17.04e-0852.00hypothetical protein [Triticum aestivum][more]
KAG6400821.11.09e-0650.00hypothetical protein SASPL_137664 [Salvia splendens][more]
Match NameE-valueIdentityDescription
A0A453E5I91.69e-0951.32Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 S... [more]
A0A1D6FY241.95e-0950.00Protein indeterminate-domain 9 OS=Zea mays OX=4577 GN=100278452 PE=4 SV=1[more]
A0A453E5P62.06e-0951.32Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 S... [more]
A0A4D8ZJ095.37e-0750.00Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_038175 PE=4 SV=1[more]
A0A453CM676.24e-0648.68Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 S... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g00650.1Cp4.1LG04g00650.1mRNA