Cp4.1LG04g00500 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g00500
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	50S ribosomal protein L18
Location	Cp4.1LG04: 1598691 .. 1601731 (-)
RNA-Seq Expression	Cp4.1LG04g00500
Synteny	Cp4.1LG04g00500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGTACCCTTCCCCTTCATTGCTGCCGCAGCCGCTTGCCGGAACGCTCCACCGCCGATCTTCTTTCGTCTCTGCTGCAACCTCACGCCAACACCAACCCCGTCTTTCGTCGAGGTCTTCCCGGATCTAAACTCTTCTTTTTCCTTTCATCTTTTTTGTTTCGTCCATTCAACCAAACTCAACACCGGGTAAATTTGGAATTAGGTTCGTGAAATGATTTCGAATCCGTTCTAGTTTGAAATCCTTTCGAACTGTGGGTTAGAATACTGTTAGTTTTAAGATGCATTTAACCTAATCTTAGTTTTTACTTATGGAATTCGTTGAAATCTGTTTTTCTTTTTTGGAGGAGATTCGACAAAGTGGCTAGCCATTCAATATTGTTGAATGTATTAGACAAAATTCGAATATGCTATATTGAACTTGGATTCATGTTTGTAAGGGTAGTGGCGAACAGATTTCGAACCTGTAGACAACCACTTTGCAGTGGCCCTATTCAGTAATTTTTCCCCAATTTTAGGTTTTAGTGGGACGACTCATATCCATGATATCTTTGTGCTTTTCCTCTTGAACCTTTTCCTCAAGGCTTTAAAACTAGTCTCCTATGGGAAGGTTTCCACACCGGTGTTTTATTCTCCTCCCCAATCAAGGTGGAACATCATAATTCATCCCCTTCGGGTCAGCGTCCTCATTGGTACTCTTTCCTTCTTCCAATTGATATGGAACCGTCCCAAATTCACCCCCTTCGGGGTCTAGCGTCCTTACTGGCATATCGCCTAATGTCTACCCCATTTCGGGGAACAGCGAGAAAGCTGGCACATCGTCGAGTGTCTGCTCTGATACCATTTGTAACGACTCAGATCTACCACTAGCAGATATTGTCCTCTTTGGGCTTTCCTTTTCGGGCTTCCCCTCAAGGCTTTAAAACGCGTTTGTTAGGAGAAGGTTTCCACACCTTCATAAATAGTGTTTTATTCTCCTCTCCAACGAACGTGGAACATCAGATTCACCCTTTGCAAATTGAAAATCAGAAGATTAGGATTTGAGCACAGAAAGCCCAGATTTCTTGAAACTGAACCAATAGATCCAATCCAACCAGTGTAGTTGAAATCTGGATTTGCCCAATCAAGTTCCTTGGTTTGGTAATGGTTCTCCATTTTCACTAACCAATGATATGGTTTCGTTATTGGTTTAGCGTTATGAATGGGTGCCATTTTAATTTTTGTAAAGAACAGATATCATTTATCTCTGCTAATTAGATAGTATATCAAAACCATTGCCCATTGCCATTATTATGAAAGCTATGTAAGGGATTTTAAACTTTAAAGCATGATATAAATGGTGGTTAACCATATTTATTATTGAACTCACTAATTGGTAGCTTAGCTTAAGCTTGAGAAGATTGAAGATCCTAAGATTCATCTTTGTTTATGTTATTTAGAGTAAGGGAGATGGTGATTCCTCCTCCAGTTAGGCCACCAAGATTAACGCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTATGTGAGCGCGCAGGTGATCCACTCCGAAACGGCCACCGTTGCTTCGGCTGCAAGCTCACAGGAGAAGGCGCTGAAGCCGAGCATGGATTCAACAAGGGATGTGGCTGCTGCTGTAAAGATCGGGAAATTGTTGGGAGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAGTATCATGGTAAGATCGAAGCTGTTGTTGACTCTGTGAGGGAAGCAGGTATTAAGCTGCTTTGAATTCACTGCTCCATATTATCTGAGTTTGATGATTAGTGAGAGTAGTGTTGTTAGGTGAAGGCGTCATAGGAGCATTTTTGGGAAATAAACAGTAACTAAGAGTCAAAACACATGTTTTAGTCTCTAATTTCTCTTTAAATTTTGCTAGTTACAAATACTTAGTGAATTAGTAGAAATTGAGAGAAGACACCTAAACATTAGGGACTTCAACATATATTTAGCCTGCTTCATTAAGAAGATGTGAGATACACATCGGTTGGGGAGAAGAACGAAACATTCTATAAAGGTGTAGAAATCTCTCCCTAGCAGTTGAGGGAAAGCGGTTAAGGAGAAGAACGAAGTATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCATATGCGTTTTAAAACTTTGAGGGGAAGCGGTTAGGGAGGATAATGAAGCATTTTTTATAAGGACGTGGAAACCTCTCTGGAGCATACTTATTTTAAAACCTTAAAGGGAAGGGGTTAGGGAGGAGAAAGAAGCATTTTTTATAAGCATGTGGAAATTTCTCCCTAGCAGGTGCGTTTTAAAACTTTGAGGTGAAGCCCAGAAGGGAAAGCTCTAGCAGACACGTTATAAAACTTTGAGGTGAAGCCCAGGAGGGAAAGCTCTAGTAAACGCATTTTAAAACTTTGAGGTAAAGCCTAGAAGGGAAAGCTCTAGCAGATGCGTTTTAAAACTTTGAGGTGAAGCCCGGAAGGGAAAGCTCTAACAAACGCATTTTAAAACTTTGAGGTGAAGCCCAGAAGGGAAAGCTCTAGCAAACGCGTTTAAAACTTTGAGGTGAAGCCTAGAAGTGAAGCCCCGAAGAGAAAGCTCTAGCAAACGCGTTTAAAACTTTGAGGTGAAGCCTAGAAGTGAAGCCCTGAAGAGAAAGCTCTAGCAAACGCGTTTAAAACTTTGAGGTGAAGCCTAGAAGGAAAAGCTCTAGCGCGTTTTAAAACTTTGAGGTGAAGTCCAGAAGGGAAAGCTCTAACAAATGTGTTTAAAACTTTAAGGTGAAACCTAGAAGGGAAAGCTCTAACGGGCGTGTTTAAAACTTTAAGGTGAAACCTAGAAGGGAAAGCTCTAACGGGCGTTTTAAAACTTTGAGGTGAAGCTCGAAAAGGAAAGGTCAAAGAGGATAATATCTGTTAGCTCGGGGGTACAAATGAAGTCATATTTTTGTTTGCTTTGCCTTGGTCAAATACAATAATTAATTAGAGATAATTAATAGTT

mRNA sequence

ATGGTAGTACCCTTCCCCTTCATTGCTGCCGCAGCCGCTTGCCGGAACGCTCCACCGCCGATCTTCTTTCGTCTCTGCTGCAACCTCACGCCAACACCAACCCCGTCTTTCGTCGAGGTCTTCCCGGATCTAAACTCTTCTTTTTCCTTTCATCTTTTTTGTTTCGTCCATTCAACCAAACTCAACACCGGAGTAAGGGAGATGGTGATTCCTCCTCCAGTTAGGCCACCAAGATTAACGCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTATGTGAGCGCGCAGGTGATCCACTCCGAAACGGCCACCGTTGCTTCGGCTGCAAGCTCACAGGAGAAGGCGCTGAAGCCGAGCATGGATTCAACAAGGGATGTGGCTGCTGCTGTAAAGATCGGGAAATTGTTGGGAGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAGTATCATGGTAAGATCGAAGCTGTTGTTGACTCTGTGAGGGAAGCAGGTATTAAGCTGCTTTGAATTCACTGCTCCATATTATCTGAGTTTGATGATTAGTGAGAGTAGTGTTGTTAGGTGAAGGCGTCATAGGAGCATTTTTGGGAAATAAACAGTAACTAAGAGTCAAAACACATGTTTTAGTCTCTAATTTCTCTTTAAATTTTGCTAGTTACAAATACTTAGTGAATTAGTAGAAATTGAGAGAAGACACCTAAACATTAGGGACTTCAACATATATTTAGCCTGCTTCATTAAGAAGATGTGAGATACACATCGGTTGGGGAGAAGAACGAAACATTCTATAAAGGTGTAGAAATCTCTCCCTAGCAGTTGAGGGAAAGCGGTTAAGGAGAAGAACGAAGTATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCATATGCGTTTTAAAACTTTGAGGGGAAGCGGTTAGGGAGGATAATGAAGCATTTTTTATAAGGACGTGGAAACCTCTCTGGAGCATACTTATTTTAAAACCTTAAAGGGAAGGGGTTAGGGAGGAGAAAGAAGCATTTTTTATAAGCATGTGGAAATTTCTCCCTAGCAGGTGCGTTTTAAAACTTTGAGGTGAAGCCCAGAAGGGAAAGCTCTAGCAGACACGTTATAAAACTTTGAGGTGAAGCCCAGGAGGGAAAGCTCTAGTAAACGCATTTTAAAACTTTGAGGTAAAGCCTAGAAGGGAAAGCTCTAGCAGATGCGTTTTAAAACTTTGAGGTGAAGCCCGGAAGGGAAAGCTCTAACAAACGCATTTTAAAACTTTGAGGTGAAGCCCAGAAGGGAAAGCTCTAGCAAACGCGTTTAAAACTTTGAGGTGAAGCCTAGAAGTGAAGCCCCGAAGAGAAAGCTCTAGCAAACGCGTTTAAAACTTTGAGGTGAAGCCTAGAAGTGAAGCCCTGAAGAGAAAGCTCTAGCAAACGCGTTTAAAACTTTGAGGTGAAGCCTAGAAGGAAAAGCTCTAGCGCGTTTTAAAACTTTGAGGTGAAGTCCAGAAGGGAAAGCTCTAACAAATGTGTTTAAAACTTTAAGGTGAAACCTAGAAGGGAAAGCTCTAACGGGCGTGTTTAAAACTTTAAGGTGAAACCTAGAAGGGAAAGCTCTAACGGGCGTTTTAAAACTTTGAGGTGAAGCTCGAAAAGGAAAGGTCAAAGAGGATAATATCTGTTAGCTCGGGGGTACAAATGAAGTCATATTTTTGTTTGCTTTGCCTTGGTCAAATACAATAATTAATTAGAGATAATTAATAGTT

Coding sequence (CDS)

ATGGTAGTACCCTTCCCCTTCATTGCTGCCGCAGCCGCTTGCCGGAACGCTCCACCGCCGATCTTCTTTCGTCTCTGCTGCAACCTCACGCCAACACCAACCCCGTCTTTCGTCGAGGTCTTCCCGGATCTAAACTCTTCTTTTTCCTTTCATCTTTTTTGTTTCGTCCATTCAACCAAACTCAACACCGGAGTAAGGGAGATGGTGATTCCTCCTCCAGTTAGGCCACCAAGATTAACGCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTATGTGAGCGCGCAGGTGATCCACTCCGAAACGGCCACCGTTGCTTCGGCTGCAAGCTCACAGGAGAAGGCGCTGAAGCCGAGCATGGATTCAACAAGGGATGTGGCTGCTGCTGTAAAGATCGGGAAATTGTTGGGAGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAGTATCATGGTAAGATCGAAGCTGTTGTTGACTCTGTGAGGGAAGCAGGTATTAAGCTGCTTTGA

Protein sequence

MVVPFPFIAAAAACRNAPPPIFFRLCCNLTPTPTPSFVEVFPDLNSSFSFHLFCFVHSTKLNTGVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALKPSMDSTRDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIEAVVDSVREAGIKLL

Homology

[Close]

BLAST of Cp4.1LG04g00500 vs. ExPASy Swiss-Prot
Match: B6EPU1 (50S ribosomal protein L18 OS=Aliivibrio salmonicida (strain LFI1238) OX=316275 GN=rplR PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.2e-10
Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 88  LKMHFTNKYVSAQVIHSETATVASAASSQEKALKPSMDSTRDVAAAVKIGKLLGERLLLK 147
           L +H T ++  AQVI    + V +AAS+ EKA++  + +T + AAAV IGKL+ ER + K
Sbjct: 26  LVVHRTPRHTYAQVIAPNGSEVIAAASTVEKAIREQVGNTSNKAAAVAIGKLIAERAIEK 85

Query: 148 GIPAVCVHLKREQKYHGKIEAVVDSVREAGIK 180
           GI  V       Q YHG++ A+ DS REAG+K
Sbjct: 86  GITNVAFDRSGFQ-YHGRVAALADSAREAGLK 116

[Close]

BLAST of Cp4.1LG04g00500 vs. ExPASy Swiss-Prot
Match: B8EBI9 (50S ribosomal protein L18 OS=Shewanella baltica (strain OS223) OX=407976 GN=rplR PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.2e-10
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 88  LKMHFTNKYVSAQVIHSETATVASAASSQEKALKPSMDSTRDVAAAVKIGKLLGERLLLK 147
           L +H T +++ AQVI+ E A V +AAS+ EKA+K  + ST +V AA  +GK + ER + K
Sbjct: 26  LVVHRTPRHIYAQVINPE-AQVLAAASTVEKAVKELLKSTGNVDAAKAVGKFVAERAIEK 85

Query: 148 GIPAVCVHLKREQKYHGKIEAVVDSVREAGIK 180
           G+ +V    +   KYHG++ A+ D+ REAG+K
Sbjct: 86  GVTSVAFD-RSGFKYHGRVAALADAAREAGLK 115

[Close]

BLAST of Cp4.1LG04g00500 vs. ExPASy Swiss-Prot
Match: A3DA56 (50S ribosomal protein L18 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) OX=325240 GN=rplR PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.2e-10
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 88  LKMHFTNKYVSAQVIHSETATVASAASSQEKALKPSMDSTRDVAAAVKIGKLLGERLLLK 147
           L +H T +++ AQVI+ E A V +AAS+ EKA+K  + ST +V AA  +GK + ER + K
Sbjct: 26  LVVHRTPRHIYAQVINPE-AQVLAAASTVEKAVKELLKSTGNVDAAKAVGKFVAERAIEK 85

Query: 148 GIPAVCVHLKREQKYHGKIEAVVDSVREAGIK 180
           G+ +V    +   KYHG++ A+ D+ REAG+K
Sbjct: 86  GVTSVAFD-RSGFKYHGRVAALADAAREAGLK 115

[Close]

BLAST of Cp4.1LG04g00500 vs. ExPASy Swiss-Prot
Match: A6WHU4 (50S ribosomal protein L18 OS=Shewanella baltica (strain OS185) OX=402882 GN=rplR PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.2e-10
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 88  LKMHFTNKYVSAQVIHSETATVASAASSQEKALKPSMDSTRDVAAAVKIGKLLGERLLLK 147
           L +H T +++ AQVI+ E A V +AAS+ EKA+K  + ST +V AA  +GK + ER + K
Sbjct: 26  LVVHRTPRHIYAQVINPE-AQVLAAASTVEKAVKELLKSTGNVDAAKAVGKFVAERAIEK 85

Query: 148 GIPAVCVHLKREQKYHGKIEAVVDSVREAGIK 180
           G+ +V    +   KYHG++ A+ D+ REAG+K
Sbjct: 86  GVTSVAFD-RSGFKYHGRVAALADAAREAGLK 115

[Close]

BLAST of Cp4.1LG04g00500 vs. ExPASy Swiss-Prot
Match: A9KWB8 (50S ribosomal protein L18 OS=Shewanella baltica (strain OS195) OX=399599 GN=rplR PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.2e-10
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 88  LKMHFTNKYVSAQVIHSETATVASAASSQEKALKPSMDSTRDVAAAVKIGKLLGERLLLK 147
           L +H T +++ AQVI+ E A V +AAS+ EKA+K  + ST +V AA  +GK + ER + K
Sbjct: 26  LVVHRTPRHIYAQVINPE-AQVLAAASTVEKAVKELLKSTGNVDAAKAVGKFVAERAIEK 85

Query: 148 GIPAVCVHLKREQKYHGKIEAVVDSVREAGIK 180
           G+ +V    +   KYHG++ A+ D+ REAG+K
Sbjct: 86  GVTSVAFD-RSGFKYHGRVAALADAAREAGLK 115

[Close]

BLAST of Cp4.1LG04g00500 vs. NCBI nr
Match: XP_023530294.1 (uncharacterized protein LOC111792903 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 220 bits (560), Expect = 6.77e-71
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 68  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALKPSMDST 127
           MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALKPSMDST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALKPSMDST 60

Query: 128 RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIEAVVDSVREAGIKLL 181
           RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIEAVVDSVREAGIKLL
Sbjct: 61  RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIEAVVDSVREAGIKLL 114

[Close]

BLAST of Cp4.1LG04g00500 vs. NCBI nr
Match: XP_022970166.1 (uncharacterized protein LOC111469142 [Cucurbita maxima] >XP_022970175.1 uncharacterized protein LOC111469142 [Cucurbita maxima])

HSP 1 Score: 215 bits (547), Expect = 6.46e-69
Identity = 109/114 (95.61%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 68  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALKPSMDST 127
           MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETAT+ASAASSQEKAL+PSM+ST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATIASAASSQEKALRPSMEST 60

Query: 128 RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIEAVVDSVREAGIKLL 181
           RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKI+AV+DSVREAGIKLL
Sbjct: 61  RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIKLL 114

[Close]

BLAST of Cp4.1LG04g00500 vs. NCBI nr
Match: XP_023530297.1 (uncharacterized protein LOC111792903 isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213 bits (543), Expect = 2.46e-68
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 68  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALKPSMDST 127
           MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALKPSMDST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALKPSMDST 60

Query: 128 RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIEAVVDSVREAG 177
           RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIEAVVDSVREAG
Sbjct: 61  RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIEAVVDSVREAG 110

[Close]

BLAST of Cp4.1LG04g00500 vs. NCBI nr
Match: XP_023530295.1 (uncharacterized protein LOC111792903 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023530296.1 uncharacterized protein LOC111792903 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211 bits (537), Expect = 2.08e-67
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 68  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALKPSMDST 127
           MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALKPSMDST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALKPSMDST 60

Query: 128 RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIEAVVDSVREA 176
           RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIEAVVDSVREA
Sbjct: 61  RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIEAVVDSVREA 109

[Close]

BLAST of Cp4.1LG04g00500 vs. NCBI nr
Match: KAG6590442.1 (hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023978.1 rplR, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 210 bits (534), Expect = 6.16e-67
Identity = 107/114 (93.86%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 68  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALKPSMDST 127
           MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKAL+ SM+ST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 128 RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIEAVVDSVREAGIKLL 181
           RDVAAA KIGKLLGERL+LKGIPAVCVHLKREQKYHGK++AVVDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of Cp4.1LG04g00500 vs. ExPASy TrEMBL
Match: A0A6J1HZV8 (uncharacterized protein LOC111469142 OS=Cucurbita maxima OX=3661 GN=LOC111469142 PE=4 SV=1)

HSP 1 Score: 215 bits (547), Expect = 3.13e-69
Identity = 109/114 (95.61%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 68  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALKPSMDST 127
           MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETAT+ASAASSQEKAL+PSM+ST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATIASAASSQEKALRPSMEST 60

Query: 128 RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIEAVVDSVREAGIKLL 181
           RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKI+AV+DSVREAGIKLL
Sbjct: 61  RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIKLL 114

[Close]

BLAST of Cp4.1LG04g00500 vs. ExPASy TrEMBL
Match: A0A6J1HE21 (uncharacterized protein LOC111462025 OS=Cucurbita moschata OX=3662 GN=LOC111462025 PE=4 SV=1)

HSP 1 Score: 209 bits (533), Expect = 4.24e-67
Identity = 107/114 (93.86%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 68  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALKPSMDST 127
           MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKAL+ SM+ST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 128 RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIEAVVDSVREAGIKLL 181
           RDVAAA KIGKLLGERL+LKGIPAVCVHLKREQKYHGK++AVVDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of Cp4.1LG04g00500 vs. ExPASy TrEMBL
Match: A0A6J1I0R8 (uncharacterized protein LOC111467940 OS=Cucurbita maxima OX=3661 GN=LOC111467940 PE=4 SV=1)

HSP 1 Score: 208 bits (530), Expect = 1.21e-66
Identity = 106/114 (92.98%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 68  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALKPSMDST 127
           MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEK L+ SM+ST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMEST 60

Query: 128 RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIEAVVDSVREAGIKLL 181
           RDVAAA KIGKLLGERL+LKGIPAVCVHLKREQKYHGK++AVVDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of Cp4.1LG04g00500 vs. ExPASy TrEMBL
Match: A0A6J1CWR7 (uncharacterized protein LOC111015286 OS=Momordica charantia OX=3673 GN=LOC111015286 PE=4 SV=1)

HSP 1 Score: 206 bits (524), Expect = 9.94e-66
Identity = 105/114 (92.11%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 68  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALKPSMDST 127
           MVIPPPVRP R+TQYLKPYVLKMHFTNKYVSAQV+HSETATVASAASSQEKAL+ SM+ST
Sbjct: 1   MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMEST 60

Query: 128 RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIEAVVDSVREAGIKLL 181
           RDVAAA KIGKLLGERLLLKGIPAVCVHLKREQKYHGK++AVVDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of Cp4.1LG04g00500 vs. ExPASy TrEMBL
Match: A0A5D3DYC1 (50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G00840 PE=4 SV=1)

HSP 1 Score: 205 bits (521), Expect = 2.84e-65
Identity = 103/114 (90.35%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 68  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALKPSMDST 127
           MVIPPP++PPRL QYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKAL+ SM+ST
Sbjct: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 128 RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIEAVVDSVREAGIKLL 181
           RDVAAA KIGKLLGERLLLKGIPAVCVHLKREQKYHGK++AV+DSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 114

[Close]

BLAST of Cp4.1LG04g00500 vs. TAIR 10
Match: AT5G27820.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 173.7 bits (439), Expect = 1.3e-43
Identity = 88/114 (77.19%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 68  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALKPSMDST 127
           MVIPP VRPPRL  YLKPYVLKMHFTNK+V AQVIHS TATVA +ASSQEKAL+ +MD T
Sbjct: 1   MVIPPAVRPPRLFDYLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDIT 60

Query: 128 RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIEAVVDSVREAGIKLL 182
           RDVAAA KIGK+LGERLL+K IPAV + +K+EQ+YHGK++AV+DSVREAG+KLL
Sbjct: 61  RDVAAASKIGKILGERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGVKLL 114

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BLAST of Cp4.1LG04g00500 vs. TAIR 10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 61.6 bits (148), Expect = 7.4e-10
Identity = 31/101 (30.69%), Postives = 61/101 (60.40%), Query Frame = 0


Query: 78  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALKPSMDSTRDVAAAVKIG 137
           R   Y++P++L + F+ K++ A+V+H  T+ V S A++  + ++ ++ S  D  A   IG
Sbjct: 83  RTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSLVDNEACRLIG 142

Query: 138 KLLGERLLLKGIPAVCVHLKREQKYHGKIEAVVDSVREAGI 179
           KL+ ER +   + AV    ++ ++  GK+  V+D+++E GI
Sbjct: 143 KLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

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BLAST of Cp4.1LG04g00500 vs. TAIR 10
Match: AT1G08845.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 53.1 bits (126), Expect = 2.6e-07
Identity = 30/101 (29.70%), Postives = 52/101 (51.49%), Query Frame = 0


Query: 78  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALKPSMDSTRDVAAAVKIG 137
           R   Y++P+ L +  + ++VSA + H  T    + A +  K +K  + S  D+ A + IG
Sbjct: 82  RTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIG 141

Query: 138 KLLGERLLLKGIPAVCVHLKREQKYHGKIEAVVDSVREAGI 179
           ++L ER     +       + + K+ GKI AVV S+ + GI
Sbjct: 142 RILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 182

[Close]

BLAST of Cp4.1LG04g00500 vs. TAIR 10
Match: AT1G08845.2 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 53.1 bits (126), Expect = 2.6e-07
Identity = 30/101 (29.70%), Postives = 52/101 (51.49%), Query Frame = 0


Query: 78  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALKPSMDSTRDVAAAVKIG 137
           R   Y++P+ L +  + ++VSA + H  T    + A +  K +K  + S  D+ A + IG
Sbjct: 127 RTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIG 186

Query: 138 KLLGERLLLKGIPAVCVHLKREQKYHGKIEAVVDSVREAGI 179
           ++L ER     +       + + K+ GKI AVV S+ + GI
Sbjct: 187 RILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 227

[Close]

BLAST of Cp4.1LG04g00500 vs. TAIR 10
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 47.0 bits (110), Expect = 1.9e-05
Identity = 29/96 (30.21%), Postives = 52/96 (54.17%), Query Frame = 0


Query: 85  PYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALKPSMDSTRDVAAAVKIGKLLGERL 144
           P+ L ++ + + V A VIH  T+ V + A S  K +K  + S R+VAA   +G +L +R 
Sbjct: 197 PFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGSRRNVAACAAVGAVLAQRS 256

Query: 145 LLKGIPAVCVHLKREQKYHGKIEAVVDSVREAGIKL 181
           L   I  V    ++  K  GK++ V+ ++ + G+ +
Sbjct: 257 LEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGVNV 292

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g00500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B6EPU1	3.2e-10	44.57	50S ribosomal protein L18 OS=Aliivibrio salmonicida (strain LFI1238) OX=316275 G...	[more]
B8EBI9	7.2e-10	43.48	50S ribosomal protein L18 OS=Shewanella baltica (strain OS223) OX=407976 GN=rplR...	[more]
A3DA56	7.2e-10	43.48	50S ribosomal protein L18 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) O...	[more]
A6WHU4	7.2e-10	43.48	50S ribosomal protein L18 OS=Shewanella baltica (strain OS185) OX=402882 GN=rplR...	[more]
A9KWB8	7.2e-10	43.48	50S ribosomal protein L18 OS=Shewanella baltica (strain OS195) OX=399599 GN=rplR...	[more]

BLAST of Cp4.1LG04g00500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023530294.1	6.77e-71	100.00	uncharacterized protein LOC111792903 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022970166.1	6.46e-69	95.61	uncharacterized protein LOC111469142 [Cucurbita maxima] >XP_022970175.1 uncharac...	[more]
XP_023530297.1	2.46e-68	100.00	uncharacterized protein LOC111792903 isoform X4 [Cucurbita pepo subsp. pepo]	[more]
XP_023530295.1	2.08e-67	100.00	uncharacterized protein LOC111792903 isoform X2 [Cucurbita pepo subsp. pepo] >XP...	[more]
KAG6590442.1	6.16e-67	93.86	hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cp4.1LG04g00500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HZV8	3.13e-69	95.61	uncharacterized protein LOC111469142 OS=Cucurbita maxima OX=3661 GN=LOC111469142...	[more]
A0A6J1HE21	4.24e-67	93.86	uncharacterized protein LOC111462025 OS=Cucurbita moschata OX=3662 GN=LOC1114620...	[more]
A0A6J1I0R8	1.21e-66	92.98	uncharacterized protein LOC111467940 OS=Cucurbita maxima OX=3661 GN=LOC111467940...	[more]
A0A6J1CWR7	9.94e-66	92.11	uncharacterized protein LOC111015286 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A5D3DYC1	2.84e-65	90.35	50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of Cp4.1LG04g00500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27820.1	1.3e-43	77.19	Ribosomal L18p/L5e family protein	[more]
AT3G20230.1	7.4e-10	30.69	Ribosomal L18p/L5e family protein	[more]
AT1G08845.1	2.6e-07	29.70	Ribosomal L18p/L5e family protein	[more]
AT1G08845.2	2.6e-07	29.70	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	1.9e-05	30.21	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 87..180 e-value: 2.9E-16 score: 59.8
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 68..181
None	No IPR available	GENE3D	3.30.420.100		coord: 77..180 e-value: 1.5E-23 score: 85.4
None	No IPR available	PANTHER	PTHR12899:SF6	OS03G0694800 PROTEIN	coord: 68..181
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 82..178 e-value: 8.85567E-28 score: 98.3811
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 77..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g00500.1	Cp4.1LG04g00500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome