Cp4.1LG04g00320 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g00320
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	lamin-like protein
Location	Cp4.1LG04: 1852202 .. 1853639 (+)
RNA-Seq Expression	Cp4.1LG04g00320
Synteny	Cp4.1LG04g00320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTTGTTAAAGAGCAGCAAAGCAAAAAAGAAAAGAAAGAGGAAGAAATGGAGGAAATGAGAGTGAGGGTGATAATGGTAATAGTGGCAATAGCTTGGGCAAGAGTTGCAATGGGAGAGAAGCTTCATAAGGTGGGCAATTCTAAAGGATGGAACCCTAATCTCAATTATACCCTTTGGTCCTCCTCGCATCGTTTCTATCTCGGTGATTGGCTTTGTAAGTTTCTTATCTCTTTCGTTTTCTCGATTTCTTTCTTTTTTTGAAAATCAGGTCAAGTCGAGTCGGGTCCTGCAAATTTGTGAGCTTTTTCAAGCAGTTTCGGTTAGTTTTGGTCCTTCAGCTCCATTGTATAGTACTGCCAATTTAGTCCCTAAATTTTTCATATTTATAATAATTTAAGGGTCCTGATTCTTGTATACCATTATTTTCATGCATGTACTTCCAAAAAAAAAAATCATTTTTTTTTCATGAATATCCAATGTTTTTTCTTTTATTTTTTTAAAATAATAAAAAAATATCGCCCGAAATTAAAGATTAGAAATGGATGAATTTATTTATTTATTTATTATTATTATTATTATTTAGAAAATAAAGTTTTGTTGTGACATATGGATGACTGAATTAATAAAAAATATTGTTTTTTTTATCTGTTTGACTTTTAAAAATATTTTAAAAATATTTTTGAGTTTCATTAATTTGGTAAGAAAGTAGGAGTGAAATTTTTAAAATTTAAAGATATTTTTGAAACATTTTAAAGTTTTAAGGGTATTTTTTAAAAATATGTACGGATGAAATAATTAATTTTTAAAATTGTATATTAATATTTTATTTGAAAAGATTTCGTGTTCGACAAGCGATACTACAACGTGTTGGAAGTGAACAAAACGAGCTACGAGAGTTGCAACGAGAAGGAGTTTATAAATAACATTACAAGAGGTGGACGAGACGTGTTTCAGCTGACGGAGTTGCGGCCCTATTTCTTCATTGCCGGCGGCGGCTACTGCTTTGAAGGAATGAAACTTGCTGTCTTAGTGTGCCCGACGGCCGTAGCCCCGGCTGCTCCGCCGTCTGCCACTCCCATAAGTGGCGCGTCTTTGTCAAACCCCACCTGTTGGATTATGAATGCGCTTCTGCTTTTTGTTGCTCTTTTCTTAGTGATTTAAGATTGAGTGAATGAAGGAAGAGAGTGATTTATTTGTGTTTGTTTGAGATACTTTCAAATTTGTTCATAAAACGATGTAATTTGATCTATTTTGATGGTCATACCAAATTACTCGAGTGGAACTTGTAATGAAATTATGCGACATATACTCTTGTTCTTGAGTAAGTCGGCTAGCTAAACTTTCATTGTCGTTGACACGTATGTTCATTCAAGTTAGGATATAAACCTCATAGATTGTTGCCATGTCTCGTTCACTTTGGATGAGCATAGGG

mRNA sequence

ATGGAAGTTGTTAAAGAGCAGCAAAGCAAAAAAGAAAAGAAAGAGGAAGAAATGGAGGAAATGAGAGTGAGGGTGATAATGGTAATAGTGGCAATAGCTTGGGCAAGAGTTGCAATGGGAGAGAAGCTTCATAAGGTGGGCAATTCTAAAGGATGGAACCCTAATCTCAATTATACCCTTTGGTCCTCCTCGCATCGTTTCTATCTCGGTGATTGGCTTTATTTCGTGTTCGACAAGCGATACTACAACGTGTTGGAAGTGAACAAAACGAGCTACGAGAGTTGCAACGAGAAGGAGTTTATAAATAACATTACAAGAGGTGGACGAGACGTGTTTCAGCTGACGGAGTTGCGGCCCTATTTCTTCATTGCCGGCGGCGGCTACTGCTTTGAAGGAATGAAACTTGCTGTCTTAGTGTGCCCGACGGCCGTAGCCCCGGCTGCTCCGCCGTCTGCCACTCCCATAAGTGGCGCGTCTTTGTCAAACCCCACCTGTTGGATTATGAATGCGCTTCTGCTTTTTGTTGCTCTTTTCTTAGTGATTTAAGATTGAGTGAATGAAGGAAGAGAGTGATTTATTTGTGTTTGTTTGAGATACTTTCAAATTTGTTCATAAAACGATGTAATTTGATCTATTTTGATGGTCATACCAAATTACTCGAGTGGAACTTGTAATGAAATTATGCGACATATACTCTTGTTCTTGAGTAAGTCGGCTAGCTAAACTTTCATTGTCGTTGACACGTATGTTCATTCAAGTTAGGATATAAACCTCATAGATTGTTGCCATGTCTCGTTCACTTTGGATGAGCATAGGG

Coding sequence (CDS)

ATGGAAGTTGTTAAAGAGCAGCAAAGCAAAAAAGAAAAGAAAGAGGAAGAAATGGAGGAAATGAGAGTGAGGGTGATAATGGTAATAGTGGCAATAGCTTGGGCAAGAGTTGCAATGGGAGAGAAGCTTCATAAGGTGGGCAATTCTAAAGGATGGAACCCTAATCTCAATTATACCCTTTGGTCCTCCTCGCATCGTTTCTATCTCGGTGATTGGCTTTATTTCGTGTTCGACAAGCGATACTACAACGTGTTGGAAGTGAACAAAACGAGCTACGAGAGTTGCAACGAGAAGGAGTTTATAAATAACATTACAAGAGGTGGACGAGACGTGTTTCAGCTGACGGAGTTGCGGCCCTATTTCTTCATTGCCGGCGGCGGCTACTGCTTTGAAGGAATGAAACTTGCTGTCTTAGTGTGCCCGACGGCCGTAGCCCCGGCTGCTCCGCCGTCTGCCACTCCCATAAGTGGCGCGTCTTTGTCAAACCCCACCTGTTGGATTATGAATGCGCTTCTGCTTTTTGTTGCTCTTTTCTTAGTGATTTAA

Protein sequence

MEVVKEQQSKKEKKEEEMEEMRVRVIMVIVAIAWARVAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVFDKRYYNVLEVNKTSYESCNEKEFINNITRGGRDVFQLTELRPYFFIAGGGYCFEGMKLAVLVCPTAVAPAAPPSATPISGASLSNPTCWIMNALLLFVALFLVI

Homology

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BLAST of Cp4.1LG04g00320 vs. ExPASy Swiss-Prot
Match: Q39131 (Lamin-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g15350 PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.1e-25
Identity = 63/141 (44.68%), Postives = 84/141 (59.57%), Query Frame = 0


Query: 18  MEEMRVRVIMVIVAIAWARVAMG--EKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYF 77
           M    V +  V++A   A    G   K + VG +K WNPN+NYT+W+    FYLGDWLYF
Sbjct: 1   MARFTVLITAVVLAFLMAAPMPGVTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYF 60

Query: 78  VFDKRYYNVLEVNKTSYESCNEKEFINNITRG-GRDVFQLTELRPYFFIAGGGYCFEGMK 137
           VFD+  +N+LEVNKT YE C     I N TRG GRD+  L + + Y+ + G G C+ GMK
Sbjct: 61  VFDRNQHNILEVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMK 120

Query: 138 LAVLVCPTAVAPAAPPSATPI 156
           L+V V    + P  PP + P+
Sbjct: 121 LSVKV--EKLPP--PPKSAPV 137

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BLAST of Cp4.1LG04g00320 vs. ExPASy Swiss-Prot
Match: Q9T076 (Early nodulin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At4g27520 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.7e-12
Identity = 49/119 (41.18%), Postives = 65/119 (54.62%), Query Frame = 0


Query: 46  VGNSKGW--NPNLNYTLWSSSHRFYLGDWLYFVFDKRYYNVLEVNKTSYESCNEKEFINN 105
           VG S  W  NP  NY  WS  +RF + D LYF + K   +VLEVNK  Y++CN K  I  
Sbjct: 33  VGGSGAWVTNPPENYESWSGKNRFLVHDTLYFSYAKGADSVLEVNKADYDACNTKNPIKR 92

Query: 106 ITRGGRDVFQLTELRPYFFIAGG-GYCFEGMKLAVLVC-----PTAVAP--AAPPSATP 155
           +  G  ++  L    P++FI+G    C +G KL V+V       TA +P  AAP S+TP
Sbjct: 93  VDDGDSEI-SLDRYGPFYFISGNEDNCKKGQKLNVVVISARIPSTAQSPHAAAPGSSTP 150

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BLAST of Cp4.1LG04g00320 vs. ExPASy Swiss-Prot
Match: Q96316 (Uclacyanin-3 OS=Arabidopsis thaliana OX=3702 GN=UCC3 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-10
Identity = 41/117 (35.04%), Postives = 61/117 (52.14%), Query Frame = 0


Query: 45  KVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVFDKRYYNVLEVNKTSYESCNEKEFINNI 104
           KVG+  GW  NL+YT+W +   F +GD L FV+    ++V  V+K  Y++C+      N 
Sbjct: 25  KVGDISGWTSNLDYTVWLTGKTFRVGDTLEFVYGLS-HSVSVVDKAGYDNCDSSGATQNF 84

Query: 105 TRGGRDVFQLTELRPYFFIAGGGYCFEGMKLAVLVCPTAVAPAAP--PSATPISGAS 160
             G   +   T    +F     G+C  GMKLAV V   A +P+ P  P +TP + +S
Sbjct: 85  ADGDTKIDLTTVGTMHFLCPTFGHCKNGMKLAVPVLAAAPSPSTPSSPPSTPSTPSS 140

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BLAST of Cp4.1LG04g00320 vs. ExPASy Swiss-Prot
Match: P80728 (Mavicyanin OS=Cucurbita pepo OX=3663 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-10
Identity = 35/102 (34.31%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 43  LHKVGNSKGWNPNL--NYTLWSSSHRFYLGDWLYFVFDKRYYNVLEVNKTSYESCNEKEF 102
           +HKVG+S GW   +  +Y  W+SS++F++GD L F ++ +++NVL+V++  ++SCN    
Sbjct: 3   VHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSP 62

Query: 103 INNITRGGRDVFQLTELRPYFFIAG-GGYCFEGMKLAVLVCP 142
             + T  G D   L     ++F+ G  G+C  G K+ + V P
Sbjct: 63  AASYT-SGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKVDP 103

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BLAST of Cp4.1LG04g00320 vs. ExPASy Swiss-Prot
Match: O82081 (Uclacyanin 1 OS=Arabidopsis thaliana OX=3702 GN=UCC1 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.2e-10
Identity = 44/139 (31.65%), Postives = 70/139 (50.36%), Query Frame = 0


Query: 21  MRVRVIMVIVAIAWARVAMGEKL---HKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 80
           M  R +++I+++  A   +G  +   H +G   GW    +   W++   F +GD L F +
Sbjct: 1   MASREMLIIISVL-ATTLIGLTVATDHTIGGPSGWTVGASLRTWAAGQTFAVGDNLVFSY 60

Query: 81  DKRYYNVLEVNKTSYESCNEKEFINNITRGGRDVFQLTELRPYFFIAGGGYCFEGMKLAV 140
              +++V+EV K  ++SC   + +     G   V   T  + YF     G+C +GMKL V
Sbjct: 61  PAAFHDVVEVTKPEFDSCQAVKPLITFANGNSLVPLTTPGKRYFICGMPGHCSQGMKLEV 120

Query: 141 LVCPTA-VAPAAP-PSATP 155
            V PTA VAP AP P+  P
Sbjct: 121 NVVPTATVAPTAPLPNTVP 138

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BLAST of Cp4.1LG04g00320 vs. NCBI nr
Match: XP_023530289.1 (lamin-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 329 bits (843), Expect = 2.71e-113
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 18  MEEMRVRVIMVIVAIAWARVAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 77
           MEEMRVRVIMVIVAIAWARVAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF
Sbjct: 1   MEEMRVRVIMVIVAIAWARVAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 60

Query: 78  DKRYYNVLEVNKTSYESCNEKEFINNITRGGRDVFQLTELRPYFFIAGGGYCFEGMKLAV 137
           DKRYYNVLEVNKTSYESCNEKEFINNITRGGRDVFQLTELRPYFFIAGGGYCFEGMKLAV
Sbjct: 61  DKRYYNVLEVNKTSYESCNEKEFINNITRGGRDVFQLTELRPYFFIAGGGYCFEGMKLAV 120

Query: 138 LVCPTAVAPAAPPSATPISGASLSNPTCWIMNALLLFVALFLVI 181
           LVCPTAVAPAAPPSATPISGASLSNPTCWIMNALLLFVALFLVI
Sbjct: 121 LVCPTAVAPAAPPSATPISGASLSNPTCWIMNALLLFVALFLVI 164

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BLAST of Cp4.1LG04g00320 vs. NCBI nr
Match: XP_022926318.1 (lamin-like protein [Cucurbita moschata] >KAG6588504.1 Lamin-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022335.1 Lamin-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 320 bits (820), Expect = 9.66e-110
Identity = 158/164 (96.34%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 18  MEEMRVRVIMVIVAIAWARVAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 77
           MEEMRVRVIMVIVA+AWA +AMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF
Sbjct: 1   MEEMRVRVIMVIVAMAWATLAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 60

Query: 78  DKRYYNVLEVNKTSYESCNEKEFINNITRGGRDVFQLTELRPYFFIAGGGYCFEGMKLAV 137
           DKRYYNVLEVNKTSYESCNEKEFI NITRGGRDVFQLTELRPYFFIAGGGYCF+GMKLAV
Sbjct: 61  DKRYYNVLEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAV 120

Query: 138 LVCPTAVAPAAPPSATPISGASLSNPTCWIMNALLLFVALFLVI 181
           LVCPTAVAPAAPPSATPISGASLSNPTCWIMNAL+LFVALFLVI
Sbjct: 121 LVCPTAVAPAAPPSATPISGASLSNPTCWIMNALMLFVALFLVI 164

[Close]

BLAST of Cp4.1LG04g00320 vs. NCBI nr
Match: XP_022970103.1 (lamin-like protein [Cucurbita maxima])

HSP 1 Score: 311 bits (796), Expect = 4.41e-106
Identity = 155/164 (94.51%), Postives = 158/164 (96.34%), Query Frame = 0


Query: 18  MEEMRVRVIMVIVAIAWARVAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 77
           MEEMRVRVIMVIVA+AWA  AMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF
Sbjct: 1   MEEMRVRVIMVIVAMAWATDAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 60

Query: 78  DKRYYNVLEVNKTSYESCNEKEFINNITRGGRDVFQLTELRPYFFIAGGGYCFEGMKLAV 137
           DKRYYNVLEVN+TSYE C EKEFI NITRGGRDVFQLTELRPYFFIAGGGYCF+GMKLAV
Sbjct: 61  DKRYYNVLEVNETSYEGCTEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAV 120

Query: 138 LVCPTAVAPAAPPSATPISGASLSNPTCWIMNALLLFVALFLVI 181
           LVCPTAVAPAAPPSATPIS ASLSNPTCWIMNALLLFVALFLVI
Sbjct: 121 LVCPTAVAPAAPPSATPISRASLSNPTCWIMNALLLFVALFLVI 164

[Close]

BLAST of Cp4.1LG04g00320 vs. NCBI nr
Match: KAA0053800.1 (lamin-like protein [Cucumis melo var. makuwa] >TYK25601.1 lamin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 207 bits (526), Expect = 5.75e-65
Identity = 105/146 (71.92%), Postives = 117/146 (80.14%), Query Frame = 0


Query: 40  GEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVFDKRYYNVLEVNKTSYESCNEKE 99
           GE LHKVGNS+GW+PN NYT WS+SH FYLGDWLYFVFDKRYYNVLEVNK SYE CN+K+
Sbjct: 19  GEVLHKVGNSEGWSPNQNYTHWSTSHHFYLGDWLYFVFDKRYYNVLEVNKRSYEDCNDKD 78

Query: 100 FINNITRGGRDVFQLTELRPYFFIAGGGYCFEGMKLAVLVCPTAVAPAAPPSATPISGAS 159
           FI NITRGGRDVFQL+EL PYFFI GGGYCF+GMKLAV V     APA  P+A+  SG  
Sbjct: 79  FIKNITRGGRDVFQLSELHPYFFIGGGGYCFQGMKLAVYVSAVDSAPAPSPAASNKSGGG 138

Query: 160 LS----NPT--CWIMNALLLFVALFL 179
            S    NPT  C ++NALLLFVA+FL
Sbjct: 139 ASFLSNNPTFCCSVLNALLLFVAIFL 164

[Close]

BLAST of Cp4.1LG04g00320 vs. NCBI nr
Match: XP_008443357.1 (PREDICTED: lamin-like protein [Cucumis melo])

HSP 1 Score: 207 bits (526), Expect = 1.00e-64
Identity = 105/146 (71.92%), Postives = 117/146 (80.14%), Query Frame = 0


Query: 40  GEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVFDKRYYNVLEVNKTSYESCNEKE 99
           GE LHKVGNS+GW+PN NYT WS+SH FYLGDWLYFVFDKRYYNVLEVNK SYE CN+K+
Sbjct: 36  GEVLHKVGNSEGWSPNQNYTHWSTSHHFYLGDWLYFVFDKRYYNVLEVNKRSYEDCNDKD 95

Query: 100 FINNITRGGRDVFQLTELRPYFFIAGGGYCFEGMKLAVLVCPTAVAPAAPPSATPISGAS 159
           FI NITRGGRDVFQL+EL PYFFI GGGYCF+GMKLAV V     APA  P+A+  SG  
Sbjct: 96  FIKNITRGGRDVFQLSELHPYFFIGGGGYCFQGMKLAVYVSAVDSAPAPSPAASNKSGGG 155

Query: 160 LS----NPT--CWIMNALLLFVALFL 179
            S    NPT  C ++NALLLFVA+FL
Sbjct: 156 ASFLSNNPTFCCSVLNALLLFVAIFL 181

[Close]

BLAST of Cp4.1LG04g00320 vs. ExPASy TrEMBL
Match: A0A6J1EHP8 (lamin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111433505 PE=4 SV=1)

HSP 1 Score: 320 bits (820), Expect = 4.68e-110
Identity = 158/164 (96.34%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 18  MEEMRVRVIMVIVAIAWARVAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 77
           MEEMRVRVIMVIVA+AWA +AMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF
Sbjct: 1   MEEMRVRVIMVIVAMAWATLAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 60

Query: 78  DKRYYNVLEVNKTSYESCNEKEFINNITRGGRDVFQLTELRPYFFIAGGGYCFEGMKLAV 137
           DKRYYNVLEVNKTSYESCNEKEFI NITRGGRDVFQLTELRPYFFIAGGGYCF+GMKLAV
Sbjct: 61  DKRYYNVLEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAV 120

Query: 138 LVCPTAVAPAAPPSATPISGASLSNPTCWIMNALLLFVALFLVI 181
           LVCPTAVAPAAPPSATPISGASLSNPTCWIMNAL+LFVALFLVI
Sbjct: 121 LVCPTAVAPAAPPSATPISGASLSNPTCWIMNALMLFVALFLVI 164

[Close]

BLAST of Cp4.1LG04g00320 vs. ExPASy TrEMBL
Match: A0A6J1I2W1 (lamin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111469092 PE=4 SV=1)

HSP 1 Score: 311 bits (796), Expect = 2.13e-106
Identity = 155/164 (94.51%), Postives = 158/164 (96.34%), Query Frame = 0


Query: 18  MEEMRVRVIMVIVAIAWARVAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 77
           MEEMRVRVIMVIVA+AWA  AMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF
Sbjct: 1   MEEMRVRVIMVIVAMAWATDAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 60

Query: 78  DKRYYNVLEVNKTSYESCNEKEFINNITRGGRDVFQLTELRPYFFIAGGGYCFEGMKLAV 137
           DKRYYNVLEVN+TSYE C EKEFI NITRGGRDVFQLTELRPYFFIAGGGYCF+GMKLAV
Sbjct: 61  DKRYYNVLEVNETSYEGCTEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAV 120

Query: 138 LVCPTAVAPAAPPSATPISGASLSNPTCWIMNALLLFVALFLVI 181
           LVCPTAVAPAAPPSATPIS ASLSNPTCWIMNALLLFVALFLVI
Sbjct: 121 LVCPTAVAPAAPPSATPISRASLSNPTCWIMNALLLFVALFLVI 164

[Close]

BLAST of Cp4.1LG04g00320 vs. ExPASy TrEMBL
Match: A0A5A7UEY9 (Lamin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007600 PE=4 SV=1)

HSP 1 Score: 207 bits (526), Expect = 2.78e-65
Identity = 105/146 (71.92%), Postives = 117/146 (80.14%), Query Frame = 0


Query: 40  GEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVFDKRYYNVLEVNKTSYESCNEKE 99
           GE LHKVGNS+GW+PN NYT WS+SH FYLGDWLYFVFDKRYYNVLEVNK SYE CN+K+
Sbjct: 19  GEVLHKVGNSEGWSPNQNYTHWSTSHHFYLGDWLYFVFDKRYYNVLEVNKRSYEDCNDKD 78

Query: 100 FINNITRGGRDVFQLTELRPYFFIAGGGYCFEGMKLAVLVCPTAVAPAAPPSATPISGAS 159
           FI NITRGGRDVFQL+EL PYFFI GGGYCF+GMKLAV V     APA  P+A+  SG  
Sbjct: 79  FIKNITRGGRDVFQLSELHPYFFIGGGGYCFQGMKLAVYVSAVDSAPAPSPAASNKSGGG 138

Query: 160 LS----NPT--CWIMNALLLFVALFL 179
            S    NPT  C ++NALLLFVA+FL
Sbjct: 139 ASFLSNNPTFCCSVLNALLLFVAIFL 164

[Close]

BLAST of Cp4.1LG04g00320 vs. ExPASy TrEMBL
Match: A0A1S3B8J9 (lamin-like protein OS=Cucumis melo OX=3656 GN=LOC103486965 PE=4 SV=1)

HSP 1 Score: 207 bits (526), Expect = 4.85e-65
Identity = 105/146 (71.92%), Postives = 117/146 (80.14%), Query Frame = 0


Query: 40  GEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVFDKRYYNVLEVNKTSYESCNEKE 99
           GE LHKVGNS+GW+PN NYT WS+SH FYLGDWLYFVFDKRYYNVLEVNK SYE CN+K+
Sbjct: 36  GEVLHKVGNSEGWSPNQNYTHWSTSHHFYLGDWLYFVFDKRYYNVLEVNKRSYEDCNDKD 95

Query: 100 FINNITRGGRDVFQLTELRPYFFIAGGGYCFEGMKLAVLVCPTAVAPAAPPSATPISGAS 159
           FI NITRGGRDVFQL+EL PYFFI GGGYCF+GMKLAV V     APA  P+A+  SG  
Sbjct: 96  FIKNITRGGRDVFQLSELHPYFFIGGGGYCFQGMKLAVYVSAVDSAPAPSPAASNKSGGG 155

Query: 160 LS----NPT--CWIMNALLLFVALFL 179
            S    NPT  C ++NALLLFVA+FL
Sbjct: 156 ASFLSNNPTFCCSVLNALLLFVAIFL 181

[Close]

BLAST of Cp4.1LG04g00320 vs. ExPASy TrEMBL
Match: A0A0A0LF66 (Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G824210 PE=4 SV=1)

HSP 1 Score: 207 bits (526), Expect = 1.49e-64
Identity = 110/166 (66.27%), Postives = 125/166 (75.30%), Query Frame = 0


Query: 23  VRVIMVIVAIAWARVAM-----GEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 82
           +R  MV+V   W  + M     GE+LHKVGNS+GW PN NYT WSSSH FYLGDWLYFVF
Sbjct: 50  IRKKMVMVCTGWLLLIMVTIGKGEELHKVGNSQGWTPNQNYTHWSSSHHFYLGDWLYFVF 109

Query: 83  DKRYYNVLEVNKTSYESCNEKEFINNITRGGRDVFQLTELRPYFFIAGGGYCFEGMKLAV 142
           DKRYYNVLEVNK S+E CNEK+FI NITRGGRDVFQLTEL PYFFI GGGYCF+GMKLAV
Sbjct: 110 DKRYYNVLEVNKRSFEDCNEKDFIKNITRGGRDVFQLTELHPYFFIGGGGYCFQGMKLAV 169

Query: 143 LVCPTA-VAPAAPPSATPISGASL--SNPT--CWIMNALLLFVALF 178
            +      APA  P+ +  SG +   +NPT  C I+NALLLFVA+F
Sbjct: 170 YMSTVDHSAPAPSPAGSNKSGGAFLSNNPTLCCSILNALLLFVAIF 215

[Close]

BLAST of Cp4.1LG04g00320 vs. TAIR 10
Match: AT2G27035.1 (early nodulin-like protein 20 )

HSP 1 Score: 130.2 bits (326), Expect = 1.7e-30
Identity = 70/161 (43.48%), Postives = 101/161 (62.73%), Query Frame = 0


Query: 25  VIMVIVAIAWARVAMGEKLHKVGNSK-GWNPNLNYTLWSSSHRFYLGDWLYFVFDKRYYN 84
           ++ V V I    V +   LH+VG  +  WN ++N++ W++  RFY GDWLYF F++  +N
Sbjct: 9   LVYVTVMILIIVVEVESSLHRVGGGRYTWNSDVNFSDWANHQRFYSGDWLYFGFNRTRHN 68

Query: 85  VLEVNKTSYESCNEKEFINNITRGGRDVFQLTELRPYFFIAGGGYCFEGMKLAVLVCPTA 144
           +L+VNK+SYE C + ++I NITRGGRDVFQL E +PY+FI G GYC +GMKLA+ V P  
Sbjct: 69  ILQVNKSSYEQCVDNDYIFNITRGGRDVFQLLEPKPYYFICGRGYCLKGMKLAITVLP-- 128

Query: 145 VAPAAPPSATPISGASLSNPTC---WIMNALLLFVALFLVI 182
                PP + P +  S + P      I  A+L+F    L++
Sbjct: 129 ----QPPPSAPTNFTSTTTPLIPPNAITAAILIFAFKALLL 163

[Close]

BLAST of Cp4.1LG04g00320 vs. TAIR 10
Match: AT3G01070.1 (early nodulin-like protein 16 )

HSP 1 Score: 119.0 bits (297), Expect = 3.9e-27
Identity = 65/139 (46.76%), Postives = 86/139 (61.87%), Query Frame = 0


Query: 18  MEEMRVRVIMVIVAIAWARVAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 77
           M  + V V   ++A   A   +  K   VG++K WNPN+NYT+W+    FYL DWLYFV+
Sbjct: 1   MARVAVLVAGAVLAFLLAATNVTAKRWTVGDNKFWNPNINYTIWAQDKHFYLDDWLYFVY 60

Query: 78  DKRYYNVLEVNKTSYESCNEKEFINNITRG-GRDVFQLTELRPYFFIAG-GGYCFEGMKL 137
           ++  YNV+EVN+T+Y SCN    I N +RG GRD+  L   R Y+ I+G GG C+ GMKL
Sbjct: 61  ERNQYNVIEVNETNYISCNPNNPIANWSRGAGRDLVHLNVTRHYYLISGNGGGCYGGMKL 120

Query: 138 AVLVCPTAVAPAAPPSATP 155
           AVLV      P  PP+A P
Sbjct: 121 AVLV----EKPPPPPAAAP 135

[Close]

BLAST of Cp4.1LG04g00320 vs. TAIR 10
Match: AT5G15350.1 (early nodulin-like protein 17 )

HSP 1 Score: 117.1 bits (292), Expect = 1.5e-26
Identity = 63/141 (44.68%), Postives = 84/141 (59.57%), Query Frame = 0


Query: 18  MEEMRVRVIMVIVAIAWARVAMG--EKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYF 77
           M    V +  V++A   A    G   K + VG +K WNPN+NYT+W+    FYLGDWLYF
Sbjct: 1   MARFTVLITAVVLAFLMAAPMPGVTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYF 60

Query: 78  VFDKRYYNVLEVNKTSYESCNEKEFINNITRG-GRDVFQLTELRPYFFIAGGGYCFEGMK 137
           VFD+  +N+LEVNKT YE C     I N TRG GRD+  L + + Y+ + G G C+ GMK
Sbjct: 61  VFDRNQHNILEVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMK 120

Query: 138 LAVLVCPTAVAPAAPPSATPI 156
           L+V V    + P  PP + P+
Sbjct: 121 LSVKV--EKLPP--PPKSAPV 137

[Close]

BLAST of Cp4.1LG04g00320 vs. TAIR 10
Match: AT4G12880.1 (early nodulin-like protein 19 )

HSP 1 Score: 116.7 bits (291), Expect = 1.9e-26
Identity = 59/114 (51.75%), Postives = 71/114 (62.28%), Query Frame = 0


Query: 42  KLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVFDKRYYNVLEVNKTSYESCNEKEFI 101
           K + VG+ K WNPN+NYTLW+    FY+GDWLYFVF +  +N+LEVNK  YE C     I
Sbjct: 27  KKYLVGDKKFWNPNINYTLWAQGKHFYVGDWLYFVFYRDQHNILEVNKADYEKCISNRPI 86

Query: 102 NNITRG-GRDVFQLTELRPYFFIAGGGYCFEGMKLAVLVCPTAVAPAAPPSATP 155
            N TRG GRD+  L E R Y+ + G G C +GMKL VLV      P  PP  TP
Sbjct: 87  RNYTRGAGRDIVPLYETRRYYLLDGRGGCVQGMKLDVLV----ETPPPPPPFTP 136

[Close]

BLAST of Cp4.1LG04g00320 vs. TAIR 10
Match: AT2G26720.1 (Cupredoxin superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 2.9e-14
Identity = 48/140 (34.29%), Postives = 76/140 (54.29%), Query Frame = 0


Query: 28  VIVAIAWARVAMGEKLHKVGNSKGWNP-NLNYTLWSSSHRFYLGDWLYFVFDKRYYNVLE 87
           +++ +    VA+G  +HKVGN+KGW     +Y  W+SS  F +GD L F ++K Y++V E
Sbjct: 13  LLIFVTLFGVAVGGTVHKVGNTKGWTMIGGDYEAWASSRVFQVGDTLVFAYNKDYHDVTE 72

Query: 88  VNKTSYESCNEKEFINNITRGGRDVFQLTELRPYFFIAG-GGYCFEGMKLAVLVCPTAVA 147
           V    +E C   + +    + G D   LT+     FI G  G+C +G KL + V P ++ 
Sbjct: 73  VTHNDFEMCESSKPLRRY-KTGSDSISLTKPGLQHFICGVPGHCKKGQKLQIHVLPASLG 132

Query: 148 PAAPPSATPI-SGASLSNPT 165
             A P   P+ S +S S+P+
Sbjct: 133 HVAVPVPGPVRSQSSSSSPS 151

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g00320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39131	2.1e-25	44.68	Lamin-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g15350 PE=2 SV=1	[more]
Q9T076	7.7e-12	41.18	Early nodulin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At4g27520 PE=1 S...	[more]
Q96316	1.9e-10	35.04	Uclacyanin-3 OS=Arabidopsis thaliana OX=3702 GN=UCC3 PE=2 SV=1	[more]
P80728	2.5e-10	34.31	Mavicyanin OS=Cucurbita pepo OX=3663 PE=1 SV=1	[more]
O82081	3.2e-10	31.65	Uclacyanin 1 OS=Arabidopsis thaliana OX=3702 GN=UCC1 PE=1 SV=1	[more]

BLAST of Cp4.1LG04g00320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023530289.1	2.71e-113	100.00	lamin-like protein [Cucurbita pepo subsp. pepo]	[more]
XP_022926318.1	9.66e-110	96.34	lamin-like protein [Cucurbita moschata] >KAG6588504.1 Lamin-like protein, partia...	[more]
XP_022970103.1	4.41e-106	94.51	lamin-like protein [Cucurbita maxima]	[more]
KAA0053800.1	5.75e-65	71.92	lamin-like protein [Cucumis melo var. makuwa] >TYK25601.1 lamin-like protein [Cu...	[more]
XP_008443357.1	1.00e-64	71.92	PREDICTED: lamin-like protein [Cucumis melo]	[more]

BLAST of Cp4.1LG04g00320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EHP8	4.68e-110	96.34	lamin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111433505 PE=4 SV=1	[more]
A0A6J1I2W1	2.13e-106	94.51	lamin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111469092 PE=4 SV=1	[more]
A0A5A7UEY9	2.78e-65	71.92	Lamin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G0...	[more]
A0A1S3B8J9	4.85e-65	71.92	lamin-like protein OS=Cucumis melo OX=3656 GN=LOC103486965 PE=4 SV=1	[more]
A0A0A0LF66	1.49e-64	66.27	Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G824210...	[more]

BLAST of Cp4.1LG04g00320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27035.1	1.7e-30	43.48	early nodulin-like protein 20	[more]
AT3G01070.1	3.9e-27	46.76	early nodulin-like protein 16	[more]
AT5G15350.1	1.5e-26	44.68	early nodulin-like protein 17	[more]
AT4G12880.1	1.9e-26	51.75	early nodulin-like protein 19	[more]
AT2G26720.1	2.9e-14	34.29	Cupredoxin superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..24
None	No IPR available	PANTHER	PTHR33021:SF262	EARLY NODULIN-LIKE PROTEIN 20	coord: 23..152
IPR008972	Cupredoxin	GENE3D	2.60.40.420		coord: 40..141 e-value: 3.4E-26 score: 93.6
IPR008972	Cupredoxin	SUPERFAMILY	49503	Cupredoxins	coord: 42..140
IPR003245	Phytocyanin domain	PFAM	PF02298	Cu_bind_like	coord: 52..133 e-value: 1.4E-18 score: 66.6
IPR003245	Phytocyanin domain	PROSITE	PS51485	PHYTOCYANIN	coord: 42..141 score: 28.635433
IPR039391	Phytocyanin	PANTHER	PTHR33021	BLUE COPPER PROTEIN	coord: 23..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g00320.1	Cp4.1LG04g00320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0032259	methylation
cellular_component	GO:0046658	anchored component of plasma membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0016740	transferase activity