Cp4.1LG04g00270 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g00270
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	40S ribosomal protein S5
Location	Cp4.1LG04: 1873666 .. 1874289 (-)
RNA-Seq Expression	Cp4.1LG04g00270
Synteny	Cp4.1LG04g00270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTTGAAGTTGATGTGGTAAACCAGGAACTGACCCAGCCTCATCATGATGTGAAGCTGTTCAACCGGTGGACCTTCGATGACGTCCAAGTGAATGATATGTCTCTGGGTGATTACATTGGTGTTGCTCCTTCCAAGCATGCCACCTATGTTCCCCACACAGCTGGGAGGTACTCTGTCAAGCGGTTCCGAAAAGCTCAGTGCCCAATTGTGGAAAGGCTCACAAATTCTCTTATGATGCACGGTAGAAACAATGGGAAGAAGCTTATGGCTGTCAGGATTATTAAACATGCAATGGAGATCATTCATCTTCTAACTGATCTCAACCCAATTCAAGTCATTGTTGATGCTGTTGTTAACAGTGGACCACGTGAAGACGCCACTCGAATCGGTTCAGCTGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTCTGCGACGCGTTAACCAGGCAATCTATCTTCTCACGACAGGTGCTCGTGAGGCTGCCTTCAGAAATATCAAAACCATTGCAGAATGCTTGGCTGATGAACTTATTAACGCAGCGAAGGGTTCATCTAACAGTTACGCCATCAAGAAAAAGGATGAGGTCGAGAGAGTTGCAAAGGCTAATCGTTGA

mRNA sequence

ATGGCTGTTGAAGTTGATGTGGTAAACCAGGAACTGACCCAGCCTCATCATGATGTGAAGCTGTTCAACCGGTGGACCTTCGATGACGTCCAAGTGAATGATATGTCTCTGGGTGATTACATTGGTGTTGCTCCTTCCAAGCATGCCACCTATGTTCCCCACACAGCTGGGAGGTACTCTGTCAAGCGGTTCCGAAAAGCTCAGTGCCCAATTGTGGAAAGGCTCACAAATTCTCTTATGATGCACGGTAGAAACAATGGGAAGAAGCTTATGGCTGTCAGGATTATTAAACATGCAATGGAGATCATTCATCTTCTAACTGATCTCAACCCAATTCAAGTCATTGTTGATGCTGTTGTTAACAGTGGACCACGTGAAGACGCCACTCGAATCGGTTCAGCTGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTCTGCGACGCGTTAACCAGGCAATCTATCTTCTCACGACAGGTGCTCGTGAGGCTGCCTTCAGAAATATCAAAACCATTGCAGAATGCTTGGCTGATGAACTTATTAACGCAGCGAAGGGTTCATCTAACAGTTACGCCATCAAGAAAAAGGATGAGGTCGAGAGAGTTGCAAAGGCTAATCGTTGA

Coding sequence (CDS)

ATGGCTGTTGAAGTTGATGTGGTAAACCAGGAACTGACCCAGCCTCATCATGATGTGAAGCTGTTCAACCGGTGGACCTTCGATGACGTCCAAGTGAATGATATGTCTCTGGGTGATTACATTGGTGTTGCTCCTTCCAAGCATGCCACCTATGTTCCCCACACAGCTGGGAGGTACTCTGTCAAGCGGTTCCGAAAAGCTCAGTGCCCAATTGTGGAAAGGCTCACAAATTCTCTTATGATGCACGGTAGAAACAATGGGAAGAAGCTTATGGCTGTCAGGATTATTAAACATGCAATGGAGATCATTCATCTTCTAACTGATCTCAACCCAATTCAAGTCATTGTTGATGCTGTTGTTAACAGTGGACCACGTGAAGACGCCACTCGAATCGGTTCAGCTGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTCTGCGACGCGTTAACCAGGCAATCTATCTTCTCACGACAGGTGCTCGTGAGGCTGCCTTCAGAAATATCAAAACCATTGCAGAATGCTTGGCTGATGAACTTATTAACGCAGCGAAGGGTTCATCTAACAGTTACGCCATCAAGAAAAAGGATGAGGTCGAGAGAGTTGCAAAGGCTAATCGTTGA

Protein sequence

MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR

Homology

[Close]

BLAST of Cp4.1LG04g00270 vs. ExPASy Swiss-Prot
Match: Q9ZUT9 (40S ribosomal protein S5-1 OS=Arabidopsis thaliana OX=3702 GN=RPS5A PE=1 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 1.2e-96
Identity = 181/207 (87.44%), Postives = 196/207 (94.69%), Query Frame = 0


Query: 2   AVEVDV-VNQELTQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 61
           + E+D  + Q+LT   ++VKLFNRW+FDDV V D+SL DYIGV PSKHAT+VPHTAGRYS
Sbjct: 4   SAEIDAEIQQQLT---NEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYS 63

Query: 62  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 121
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA+V
Sbjct: 64  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 123

Query: 122 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 181
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LLTTGAREAAFRNIKTIAECLADEL
Sbjct: 124 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADEL 183

Query: 182 INAAKGSSNSYAIKKKDEVERVAKANR 208
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 184 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of Cp4.1LG04g00270 vs. ExPASy Swiss-Prot
Match: O65731 (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum OX=3827 GN=RPS5 PE=2 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 1.5e-96
Identity = 180/190 (94.74%), Postives = 187/190 (98.42%), Query Frame = 0


Query: 18  DVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 77
           +VKLFNRW+FDDVQ++D+SL DYIGV PSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN
Sbjct: 8   EVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 67

Query: 78  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVV 137
           SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTD NPIQVIVDAVVNSGPREDATRIGSAGVV
Sbjct: 68  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVV 127

Query: 138 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 197
           RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIK+IAECLADELINAAKGSSNSYAIKKKD
Sbjct: 128 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKD 187

Query: 198 EVERVAKANR 208
           E+ERVAKANR
Sbjct: 188 EIERVAKANR 197

[Close]

BLAST of Cp4.1LG04g00270 vs. ExPASy Swiss-Prot
Match: P51427 (40S ribosomal protein S5-2 OS=Arabidopsis thaliana OX=3702 GN=RPS5B PE=1 SV=2)

HSP 1 Score: 348.2 bits (892), Expect = 6.4e-95
Identity = 179/207 (86.47%), Postives = 194/207 (93.72%), Query Frame = 0


Query: 2   AVEVDV-VNQELTQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 61
           A +VD  + Q LT   ++VKLFNRWT+DDV V D+SL DYIGV  +KHAT+VPHTAGRYS
Sbjct: 4   AADVDAEIQQALT---NEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYS 63

Query: 62  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 121
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA+V
Sbjct: 64  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 123

Query: 122 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 181
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+L+TTGAREAAFRNIKTIAECLADEL
Sbjct: 124 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADEL 183

Query: 182 INAAKGSSNSYAIKKKDEVERVAKANR 208
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 184 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of Cp4.1LG04g00270 vs. ExPASy Swiss-Prot
Match: Q5E988 (40S ribosomal protein S5 OS=Bos taurus OX=9913 GN=RPS5 PE=2 SV=3)

HSP 1 Score: 308.5 bits (789), Expect = 5.6e-83
Identity = 153/190 (80.53%), Postives = 174/190 (91.58%), Query Frame = 0


Query: 18  DVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 77
           D+KLF +W+ DDVQ+ND+SL DYI V   K+A Y+PH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 16  DIKLFGKWSTDDVQINDISLQDYIAV-KEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTN 75

Query: 78  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVV 137
           S+MMHGRNNGKKLM VRI+KHA EIIHLLT  NP+QV+V+A++NSGPRED+TRIG AG V
Sbjct: 76  SMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTV 135

Query: 138 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 197
           RRQAVD+SPLRRVNQAI+LL TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD
Sbjct: 136 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 195

Query: 198 EVERVAKANR 208
           E+ERVAK+NR
Sbjct: 196 ELERVAKSNR 204

[Close]

BLAST of Cp4.1LG04g00270 vs. ExPASy Swiss-Prot
Match: P46782 (40S ribosomal protein S5 OS=Homo sapiens OX=9606 GN=RPS5 PE=1 SV=4)

HSP 1 Score: 308.5 bits (789), Expect = 5.6e-83
Identity = 153/190 (80.53%), Postives = 174/190 (91.58%), Query Frame = 0


Query: 18  DVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 77
           D+KLF +W+ DDVQ+ND+SL DYI V   K+A Y+PH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 16  DIKLFGKWSTDDVQINDISLQDYIAV-KEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTN 75

Query: 78  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVV 137
           S+MMHGRNNGKKLM VRI+KHA EIIHLLT  NP+QV+V+A++NSGPRED+TRIG AG V
Sbjct: 76  SMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTV 135

Query: 138 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 197
           RRQAVD+SPLRRVNQAI+LL TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD
Sbjct: 136 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 195

Query: 198 EVERVAKANR 208
           E+ERVAK+NR
Sbjct: 196 ELERVAKSNR 204

[Close]

BLAST of Cp4.1LG04g00270 vs. NCBI nr
Match: XP_023530800.1 (40S ribosomal protein S5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 403 bits (1036), Expect = 1.33e-141
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 60
           MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS
Sbjct: 1   MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 60

Query: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEVERVAKANR 207
           INAAKGSSNSYAIKKKDEVERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEVERVAKANR 207

[Close]

BLAST of Cp4.1LG04g00270 vs. NCBI nr
Match: XP_022932519.1 (40S ribosomal protein S5 [Cucurbita moschata] >KAG6588507.1 40S ribosomal protein S5-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG6588528.1 40S ribosomal protein S5-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 401 bits (1031), Expect = 7.71e-141
Identity = 206/207 (99.52%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 60
           MAVEVDVVNQELTQPHHDVKLFNRWTFDDV VNDMSLGDYIGVAPSKHATYVPHTAGRYS
Sbjct: 1   MAVEVDVVNQELTQPHHDVKLFNRWTFDDVHVNDMSLGDYIGVAPSKHATYVPHTAGRYS 60

Query: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEVERVAKANR 207
           INAAKGSSNSYAIKKKDEVERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEVERVAKANR 207

[Close]

BLAST of Cp4.1LG04g00270 vs. NCBI nr
Match: XP_022970010.1 (40S ribosomal protein S5 [Cucurbita maxima])

HSP 1 Score: 399 bits (1024), Expect = 9.00e-140
Identity = 205/207 (99.03%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 60
           MAVEVDVVNQELTQPH+DVKLFNRWTFDDV VNDMSLGDYIGVAPSKHATYVPHTAGRYS
Sbjct: 1   MAVEVDVVNQELTQPHNDVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPHTAGRYS 60

Query: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEVERVAKANR 207
           INAAKGSSNSYAIKKKDEVERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEVERVAKANR 207

[Close]

BLAST of Cp4.1LG04g00270 vs. NCBI nr
Match: XP_038888891.1 (40S ribosomal protein S5-like isoform X2 [Benincasa hispida] >XP_038888892.1 40S ribosomal protein S5-like isoform X2 [Benincasa hispida] >XP_038888893.1 40S ribosomal protein S5-like isoform X2 [Benincasa hispida] >XP_038893011.1 40S ribosomal protein S5-like [Benincasa hispida] >XP_038893013.1 40S ribosomal protein S5-like [Benincasa hispida] >KAA0032160.1 40S ribosomal protein S5-like isoform X1 [Cucumis melo var. makuwa] >TYK14405.1 40S ribosomal protein S5-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 397 bits (1019), Expect = 5.21e-139
Identity = 203/207 (98.07%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 60
           MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVND+SL DYIGVAP+KHATYVPHTAGRYS
Sbjct: 1   MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 60

Query: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEVERVAKANR 207
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of Cp4.1LG04g00270 vs. NCBI nr
Match: XP_008447165.1 (PREDICTED: 40S ribosomal protein S5-like isoform X2 [Cucumis melo] >KAA0040833.1 40S ribosomal protein S5-like isoform X2 [Cucumis melo var. makuwa] >TYK17809.1 40S ribosomal protein S5-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 396 bits (1018), Expect = 7.40e-139
Identity = 202/207 (97.58%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 60
           MAVE+DVVNQELTQPHHDVKLFNRWTFDDVQVND+SL DYIGVAP+KHATYVPHTAGRYS
Sbjct: 1   MAVEIDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 60

Query: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEVERVAKANR 207
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of Cp4.1LG04g00270 vs. ExPASy TrEMBL
Match: A0A6J1EX77 (40S ribosomal protein S5 OS=Cucurbita moschata OX=3662 GN=LOC111439005 PE=3 SV=1)

HSP 1 Score: 401 bits (1031), Expect = 3.73e-141
Identity = 206/207 (99.52%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 60
           MAVEVDVVNQELTQPHHDVKLFNRWTFDDV VNDMSLGDYIGVAPSKHATYVPHTAGRYS
Sbjct: 1   MAVEVDVVNQELTQPHHDVKLFNRWTFDDVHVNDMSLGDYIGVAPSKHATYVPHTAGRYS 60

Query: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEVERVAKANR 207
           INAAKGSSNSYAIKKKDEVERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEVERVAKANR 207

[Close]

BLAST of Cp4.1LG04g00270 vs. ExPASy TrEMBL
Match: A0A6J1I1L9 (40S ribosomal protein S5 OS=Cucurbita maxima OX=3661 GN=LOC111469027 PE=3 SV=1)

HSP 1 Score: 399 bits (1024), Expect = 4.36e-140
Identity = 205/207 (99.03%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 60
           MAVEVDVVNQELTQPH+DVKLFNRWTFDDV VNDMSLGDYIGVAPSKHATYVPHTAGRYS
Sbjct: 1   MAVEVDVVNQELTQPHNDVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPHTAGRYS 60

Query: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEVERVAKANR 207
           INAAKGSSNSYAIKKKDEVERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEVERVAKANR 207

[Close]

BLAST of Cp4.1LG04g00270 vs. ExPASy TrEMBL
Match: A0A5A7SN17 (40S ribosomal protein S5-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00550 PE=3 SV=1)

HSP 1 Score: 397 bits (1019), Expect = 2.52e-139
Identity = 203/207 (98.07%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 60
           MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVND+SL DYIGVAP+KHATYVPHTAGRYS
Sbjct: 1   MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 60

Query: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEVERVAKANR 207
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of Cp4.1LG04g00270 vs. ExPASy TrEMBL
Match: A0A5D3D3Q1 (40S ribosomal protein S5-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00570 PE=3 SV=1)

HSP 1 Score: 396 bits (1018), Expect = 3.58e-139
Identity = 202/207 (97.58%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 60
           MAVE+DVVNQELTQPHHDVKLFNRWTFDDVQVND+SL DYIGVAP+KHATYVPHTAGRYS
Sbjct: 1   MAVEIDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 60

Query: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEVERVAKANR 207
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of Cp4.1LG04g00270 vs. ExPASy TrEMBL
Match: A0A1S3BGS8 (40S ribosomal protein S5-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489682 PE=3 SV=1)

HSP 1 Score: 396 bits (1018), Expect = 3.58e-139
Identity = 202/207 (97.58%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 60
           MAVE+DVVNQELTQPHHDVKLFNRWTFDDVQVND+SL DYIGVAP+KHATYVPHTAGRYS
Sbjct: 1   MAVEIDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 60

Query: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEVERVAKANR 207
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of Cp4.1LG04g00270 vs. TAIR 10
Match: AT2G37270.1 (ribosomal protein 5B )

HSP 1 Score: 354.0 bits (907), Expect = 8.3e-98
Identity = 181/207 (87.44%), Postives = 196/207 (94.69%), Query Frame = 0


Query: 2   AVEVDV-VNQELTQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 61
           + E+D  + Q+LT   ++VKLFNRW+FDDV V D+SL DYIGV PSKHAT+VPHTAGRYS
Sbjct: 4   SAEIDAEIQQQLT---NEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYS 63

Query: 62  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 121
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA+V
Sbjct: 64  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 123

Query: 122 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 181
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LLTTGAREAAFRNIKTIAECLADEL
Sbjct: 124 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADEL 183

Query: 182 INAAKGSSNSYAIKKKDEVERVAKANR 208
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 184 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of Cp4.1LG04g00270 vs. TAIR 10
Match: AT2G37270.2 (ribosomal protein 5B )

HSP 1 Score: 354.0 bits (907), Expect = 8.3e-98
Identity = 181/207 (87.44%), Postives = 196/207 (94.69%), Query Frame = 0


Query: 2   AVEVDV-VNQELTQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 61
           + E+D  + Q+LT   ++VKLFNRW+FDDV V D+SL DYIGV PSKHAT+VPHTAGRYS
Sbjct: 4   SAEIDAEIQQQLT---NEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYS 63

Query: 62  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 121
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA+V
Sbjct: 64  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 123

Query: 122 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 181
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LLTTGAREAAFRNIKTIAECLADEL
Sbjct: 124 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADEL 183

Query: 182 INAAKGSSNSYAIKKKDEVERVAKANR 208
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 184 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of Cp4.1LG04g00270 vs. TAIR 10
Match: AT3G11940.1 (ribosomal protein 5A )

HSP 1 Score: 348.2 bits (892), Expect = 4.5e-96
Identity = 179/207 (86.47%), Postives = 194/207 (93.72%), Query Frame = 0


Query: 2   AVEVDV-VNQELTQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 61
           A +VD  + Q LT   ++VKLFNRWT+DDV V D+SL DYIGV  +KHAT+VPHTAGRYS
Sbjct: 4   AADVDAEIQQALT---NEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYS 63

Query: 62  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 121
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA+V
Sbjct: 64  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 123

Query: 122 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 181
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+L+TTGAREAAFRNIKTIAECLADEL
Sbjct: 124 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADEL 183

Query: 182 INAAKGSSNSYAIKKKDEVERVAKANR 208
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 184 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of Cp4.1LG04g00270 vs. TAIR 10
Match: AT3G11940.2 (ribosomal protein 5A )

HSP 1 Score: 348.2 bits (892), Expect = 4.5e-96
Identity = 179/207 (86.47%), Postives = 194/207 (93.72%), Query Frame = 0


Query: 2   AVEVDV-VNQELTQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 61
           A +VD  + Q LT   ++VKLFNRWT+DDV V D+SL DYIGV  +KHAT+VPHTAGRYS
Sbjct: 4   AADVDAEIQQALT---NEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYS 63

Query: 62  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 121
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA+V
Sbjct: 64  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 123

Query: 122 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 181
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+L+TTGAREAAFRNIKTIAECLADEL
Sbjct: 124 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADEL 183

Query: 182 INAAKGSSNSYAIKKKDEVERVAKANR 208
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 184 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of Cp4.1LG04g00270 vs. TAIR 10
Match: ATCG01240.1 (ribosomal protein S7 )

HSP 1 Score: 56.2 bits (134), Expect = 3.6e-08
Identity = 48/136 (35.29%), Postives = 74/136 (54.41%), Query Frame = 0


Query: 74  RLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGP--REDATRI 133
           RL N L+     +GKK +A +II  A++ I   T+ NP+ V+  A+    P     A R+
Sbjct: 21  RLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRV 80

Query: 134 GSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSY 193
           G  G   +  ++I   +    AI  L   +R+   RN   +A  L+ EL++AAKGS +  
Sbjct: 81  G--GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRN---MAFKLSSELVDAAKGSGD-- 140

Query: 194 AIKKKDEVERVAKANR 208
           AI+KK+E  R+A+ANR
Sbjct: 141 AIRKKEETHRMAEANR 149

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g00270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZUT9	1.2e-96	87.44	40S ribosomal protein S5-1 OS=Arabidopsis thaliana OX=3702 GN=RPS5A PE=1 SV=1	[more]
O65731	1.5e-96	94.74	40S ribosomal protein S5 (Fragment) OS=Cicer arietinum OX=3827 GN=RPS5 PE=2 SV=1	[more]
P51427	6.4e-95	86.47	40S ribosomal protein S5-2 OS=Arabidopsis thaliana OX=3702 GN=RPS5B PE=1 SV=2	[more]
Q5E988	5.6e-83	80.53	40S ribosomal protein S5 OS=Bos taurus OX=9913 GN=RPS5 PE=2 SV=3	[more]
P46782	5.6e-83	80.53	40S ribosomal protein S5 OS=Homo sapiens OX=9606 GN=RPS5 PE=1 SV=4	[more]

BLAST of Cp4.1LG04g00270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023530800.1	1.33e-141	100.00	40S ribosomal protein S5 [Cucurbita pepo subsp. pepo]	[more]
XP_022932519.1	7.71e-141	99.52	40S ribosomal protein S5 [Cucurbita moschata] >KAG6588507.1 40S ribosomal protei...	[more]
XP_022970010.1	9.00e-140	99.03	40S ribosomal protein S5 [Cucurbita maxima]	[more]
XP_038888891.1	5.21e-139	98.07	40S ribosomal protein S5-like isoform X2 [Benincasa hispida] >XP_038888892.1 40S...	[more]
XP_008447165.1	7.40e-139	97.58	PREDICTED: 40S ribosomal protein S5-like isoform X2 [Cucumis melo] >KAA0040833.1...	[more]

BLAST of Cp4.1LG04g00270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EX77	3.73e-141	99.52	40S ribosomal protein S5 OS=Cucurbita moschata OX=3662 GN=LOC111439005 PE=3 SV=1	[more]
A0A6J1I1L9	4.36e-140	99.03	40S ribosomal protein S5 OS=Cucurbita maxima OX=3661 GN=LOC111469027 PE=3 SV=1	[more]
A0A5A7SN17	2.52e-139	98.07	40S ribosomal protein S5-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3D3Q1	3.58e-139	97.58	40S ribosomal protein S5-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BGS8	3.58e-139	97.58	40S ribosomal protein S5-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489682...	[more]

BLAST of Cp4.1LG04g00270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37270.1	8.3e-98	87.44	ribosomal protein 5B	[more]
AT2G37270.2	8.3e-98	87.44	ribosomal protein 5B	[more]
AT3G11940.1	4.5e-96	86.47	ribosomal protein 5A	[more]
AT3G11940.2	4.5e-96	86.47	ribosomal protein 5A	[more]
ATCG01240.1	3.6e-08	35.29	ribosomal protein S7	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023798	Ribosomal protein S7 domain	PFAM	PF00177	Ribosomal_S7	coord: 61..207 e-value: 5.2E-37 score: 126.8
IPR005716	Ribosomal protein S5/S7, eukaryotic/archaeal	TIGRFAM	TIGR01028	TIGR01028	coord: 19..207 e-value: 3.1E-90 score: 298.8
IPR005716	Ribosomal protein S5/S7, eukaryotic/archaeal	CDD	cd14867	uS7_Eukaryote	coord: 20..207 e-value: 1.94953E-136 score: 377.664
IPR036823	Ribosomal protein S7 domain superfamily	GENE3D	1.10.455.10	Ribosomal protein S7 domain	coord: 1..207 e-value: 3.0E-96 score: 322.7
IPR036823	Ribosomal protein S7 domain superfamily	SUPERFAMILY	47973	Ribosomal protein S7	coord: 20..207
IPR000235	Ribosomal protein S5/S7	PIRSF	PIRSF002122	RPS7p_RPS7a_RPS5e_RPS7o	coord: 1..207 e-value: 7.2E-40 score: 134.8
IPR000235	Ribosomal protein S5/S7	PANTHER	PTHR11205	RIBOSOMAL PROTEIN S7	coord: 3..207
None	No IPR available	PANTHER	PTHR11205:SF36	40S RIBOSOMAL PROTEIN S5	coord: 3..207
IPR020606	Ribosomal protein S7, conserved site	PROSITE	PS00052	RIBOSOMAL_S7	coord: 73..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g00270.1	Cp4.1LG04g00270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding