Cp4.1LG04g00260 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g00260
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	la-related protein 6B-like
Location	Cp4.1LG04: 1903075 .. 1919703 (-)
RNA-Seq Expression	Cp4.1LG04g00260
Synteny	Cp4.1LG04g00260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCACCGTTCTTCCTCTTCCCCTTCCCCTTCCCCCTCCCCTCCTCTCCCTTCCCAATCCGATCCATCTCTTTCCCGGAACTCTTCTCTCAGCCGTCTCAACGCCCAGGCTCCTGAGTTCGTCCCCACTCGCTCCTCCCCTCGTCCCGATCTACAACCTCCGCACTCCTCCTCTGGCTCTCAGCCTCCTCCTCCTCCTACTCCTTCCTCCAAGCAATCGCCTCGGATTCTCATTCCTTCTCCTCCTCCGCCGCCGGCCGTGATGCATGTTTATCCTCCCCCTCCACCTGGATCTCCCTTCCATGTTCCCATTCAGAGCCCTGTTCCTGGTCCTGTTCCTGTTCCTGTTCCCACTCATGTTGTTTCTATTCCGAATCATCACTATCATCCTCATCATCGCCACCACCACCACCATCATTCCCATCATGTTCCTGTGCTTTATCATCCTCATAATCCTCAGTATTATGCCGATAATGGTGGATTTCATGACCCTGACAACGTTGTGCAGCAACCTCAGAAGCCTCCGGTTGAGTCCGACTATGGTGCTCCGTCTAGGACTAAACTCACTGAGGAAGTTTCCCAGAAGCTTTTGAATCAGGTTGCCTTTTCTTTTTACTAGATCCTCTATGTTTATGCGCTTCACTTCGTGTCAAGATTTTGATATCTGCTTTGTTCAATATTTACGTTGGTATGGAGCTGAATTTCATATCCTTCTGTCAAATCTCTATGGGATAGTTGCTTGGGTTAATTTTATGAAGCACCGTAACTGTTTTGAGCCTGCGAATTATTTTGCTTCTCTAGGCACATATTATGTTCGTTAGAAGTCAGGGCTACTTGAAAAGGGGTTAGAGCTCCCTGCCAATTCCGTTCTGTACTCTCTTTTCCTTCTGCACTAATATTGTTTATATCAGCAAGATTTCTTTTTTCAAAGGGAGCTGTAGGTAAAAAGATCCAAAGGTAGCTTGCAACCTAGAAAAGGGCTTTTCTCAAAGGGAGGGAAGCTGAATCTTTTAGTGTGTACTTTGTGAGACTCCTTCTTACTTCATGTCAGTGTTTAGGATTCTTGTTTTTGTGTAAGAACTTTGAGACGATTATGAAGGACTTTTTGTGGGAAAGGGTTGATGGGGAGGAGGTCCTCATTTGATTAGGTGGACTAATTTTTCAAAGTAGATCAATTGGGGGGGTTGGGAATCCGGTTTGAGACTTCATAATTTGGCATTGTTGGCTAAATGGTTATGACATTTCGCATTGGAATTGAATTCTTTGTGGCATATGGTCATCGTGAGCAAACGACCTCCATCCATCCAAATGGGTCTAATGGCACGGTAAAGAATCCTTGTTTTGTGATTGCTTCAAGTCCCTTTCCTTAGTTATGTGACTCGCGTGTTGGAGATGACTTGAGCACCTATTTTTGGGAGTATTTTTGGGTGGGTCATAGACCCTTGTGTTTGGAGTTCTTTGCTTCTATCATTTATCTACTTCGAGGATGTGCCAGGCTCTTCCATTATTTCTTCTTTTAGTCCTTGTCTTTTGTTCAAAATTGGATTTGTTAATCCCTTGTTCGATAGGGAGTCTTTGTTGTTGCTGCTCTTATTGAATTTTTGTAGTATCATTCTCCATATGGGAACTAAAATTCTTTGTCCATCTAAAGGTTCTCTTGTGGTTTCTTTTTTAGCCTTTTGTGTAGCTTTAGTGCTCTTCCCTCCCTTCTTTTTGTTATGGAAGGCAAATATTCCCAAGAAGGTCAAATTATTTGCTTGGTAGGTTCTTGATGAGGATGTTAACACTATGGACCAGATTCTGAGACACTATTTCTTTGCTTTGAGGCTGCAGATGGTATATTCTTGGTAGGGAGGCATTTGAGGATTTGAGCTATTTCTTGTACTTATTAGCCTTTTGTGTAGCTTTAGTGCTCTTCCCTCCCTGCTTTTTGTTATGGAAGGCAAATATTCCCAAGAAGGTCAAATTATTTGCTTGGTAGGTTCTTGATGAGGATGTTAACACTATGGACCAGATTCTGAGACACTATTTCTTTGCTTTGAGGCTGCAGATGGTATATTCTTGGTAGGGAGGCATTTGAGGATTTGAGCTATTTCTTGTACTTATTAGCCTTTTGTGTAGCTTTAGTGCTCTTCCCTCCCTGCTTTTTGTTATGGAAGGCAAATATTCCCAAGAAGGTCAAATTATTTGCTTGGTAGGTTCTTGATGAGGATGTTAACACTATGGACCAGATTCTGAGACACTATTTCTTTGCTTTGAGGCTGCAGATGGTATATTCTTGGTAGGGGGAGGCATTTGAGAATTTGAGCTATTTCTTGTACTGGTGCAAGTTTCTTGCTCATTTTTGGGGTGTGTTTTCCCCTTAACTGGGACTGTTGTCTTATGAAGGAGGAGATCCCACTTCACTTTCGGGGTATTTGGTTGGAGAGGAATAATAAGATTTTTAGAGGGTGGAGAGGTCTTTGGAGGAATTTTGGTCCTTGGCTAGGTTTAACGTCTCGCGTTGGGTGTTTGTATCCAAGGGATTTATCTTGTTGGATTGGAGTTTGGTTTGGCTCCTTTTGAAGCTGTCTTTTTGTATACCTTTGGCTGGTTTGCTGGTCTCCTTTGTATTCTTTCAATCAAGGTTTCAGTTTTTTGATAAAACAAGAAACAGCATGTATTTGGGCCACCTTTCATAATCTATTTCTACAAAGAAAACTAAAAAAACGCTATTTTCCCTTGTGAGTCTATAGATTTGGACACCATGTATTTGTGCAACCTTTCAAAGAGTGTTTAGGCCAACTTTCATTGCCGGTTCTGCAAACTTCTTCCCCTTTTTTTGCAAAGGGGCAGATACTAGGTAGAGCAAAGATATTATCCAAATATCCTAGTATGAACAATCATTGAAGTTAGCCTCCAGAAACTATTCTTCTGCTGATCACTTCTCTCCGTCTCCCACCCTTCTGACTTATCCATAACAGCTTCAACATCTAAGATAAGATTTTCTTTTGGTTCCTTCATATTTTGTCGATTTTGTTTCTTAAGGAGATTTTGTCATGGAGTTAAGTAATTGTTGCGTGGGCAAGACATTTTCTCTACCTTTCTTCTGAATAAATTGTTTTCATAATTGACGATAAGTTTGGTAATGACTCTTTTTGGGGAGTGTGGTTAGAAAAAGATATGTGACTTCAAAGGATAATGGGATTGAAAGCTAATTCTTTTGGGAGATTTGGTCAGAGAGGAAGCAAAGTTTATTGAGAGGAAACTTTTTGACACTTGCTTATCAAATCTTGCTCTAGAACTTGGTTTAATGTTACAGCTCAAATAATCTCATATCATGACACATCTTGCAGTAGTAGTTCTATAGATGGTCTGGGATAACCTTGTGCTATTGTATTTTTTTTAAAGTATATATTTCTGATAAATTTTCTATCACCTATGAAGTACAATCACTCTATTAAACCCACACAAACCCAAACCTTCACCCCATACACTGCCTTATAGGTTAGTAAATTTTACCTTTTAATCCCCTAAACAGCCAGAGTATCTAGAATCCAAGGATTGTTGGTGTAGAACTTCAATATGCTGATGTTTGGAAGGGTGAAAACTGTGATTATCTTTTGCTTATAAAAGGGACAGCAGAACATGAAGATCTTGAAGCTTGGATATTGACCTCTGGTTTTTGAGAGGATGGTTAACATAATAACCACCACAGCACCTTGGATCTTGCATCTGCTGAAGGAAACCATGTAGAAAACTGGATAATAACTTTCCGTAGAAGAATATCCATAAAAGTAACTTTTTGGGCAAATTGCATGAAAAGCAATGTCATATTCTTTGTTCCTTGTCAAAAAAAGGAAAGGAAAAAAATGACTCTTTAAAGCTGTCAAATGGATATTCTACATATATCATATAAAACTCAGAAGAGACAATTGAGGTAGGTATCTGATAAAGTCTCTTGTGTTCCTATGACCCTACATTAAGTTAAAAAAAGAAAAAGAAAAAAGAAAAAAAGTGGGAGAGGGCCGAACAATGGATAAAAGTATTTGGTTATCCTTGTTTTAAAGTTGATATAGTGGTGAGCTGTCCTTTCTGACTCAACGTTAGTAAGTTGGATCATTCCTTATGGCTTTTGGTGCTCACTATTACCACCCAACAAGGATCAATTTGATGACTTTGAAATTATAAATTTGAATCTTTATGACTATTAGTCTAGGATATCACTTTTCTGCAAGTATCCTTTGAAAATAAAAAGGTACATAAGTTTGCCAGGACTCTTATCGTGGGTATCAATTAAAAAGTTGAACAGTTAATTTAGTAGGTTGGGTACTTTTACTGTGTTTTAAATTCCAATATTAATTAGATATTGTTTTCTATGCCTACCTTCTTTTTATCATTCACTTTATTAAATTATTTGCGAAATTATGGTTTTTAGGTGGAATATTATTTCAGTGATTTAAATTTGGCAACTACTGATCATTTGATGAGGTTTATCAATAAAGATCCCGATGGATATGGTAAGATTCTCTCTTGGCATTTTTATTTGAATTTCACATTCTGTTAACGTGTGGAGATCCCACTCTTACCATCCTGCCATTGGTGGATTGCTTTGGTAAAACTCATTACTTGATGATGATTTAGAATTAGTCATCTGGCCTCCCTTCTCTCTTTCTCTCTCTAAAATACTTCACCTGAGTAAGGTCCATTTTAATTCAGTGCCTATATCGGTTGTTGCATCATTCAAGAAGATTAAGGCTCTCATTAATAGCCACTCTCAGCTAGCCAATATTTTGCGCAACTCTTCTAAGCTTGTGAGTATTTAATTTATTTTAACATCCTTCTTTACCTCTGTTGCCCTGAAGTTATCCTCAATTCTCTTTCTTGTTTTGTTCCCCAAATTTCTCTTTCTTGTTTTGTTCCCCTCATGCTTTTTGGTTCAATATTCTGCAGATGGTTAGTGAAGATGGAAAGAAAGTTAGACGCAAACAACCACTTTCAGAGTCAGATATGGAGGAGCTGCAAGTAGGGTTTATTTATTTAATTTAATGATTACATAAATTATATAAAGAGAATGTTTTAGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTTTTTTTCCTTTTTTAAGTTAAATTTTTTTCATCTGGTTCTATTTTCATCAAAACATGTGTGATGATTCCATCCCAGTGCCCATAATATATCATTGATTTACAAACCAATGCTTTAAATCTTTGTTTGTTATGCCTTTTGTCTTACTTGCCCCCTCAGTCTCGCATAGTCATTGCGGAGAATTTACCTGATGATCATTGCCACCAAAACCTCATGAAGATTTTTTCTGCTGTTGGGAGGTATAAGTATTTAGTGATTTTATTGTTCCATGTTCAACAGCTTACTAAAGTAATATTGAGTTATCATACCGCTTTACTCTTTGGCAGTGTTAAAAACATTCGAACGTGTCAACCTCAAATCTCAGATAGTGGAACTTCTTCAACATCTAAATCAGCCAAAGCTGATGGAATGCATTACAGTAACAAGGTATACCTATTTGCTGTAGCATAGGGTATCTGGGATTGTTGGTGCAATCTTTCTTCTCCATTAACCTTTAGCATTGTATGCATGATTTCCTTAAAGTCTGCTGTAGGGATTATCCAAAATCTCCAGAAGAACTGGTTCCAAATTAGGTGGGGAACACTGGTTTGAAGTATAGGACGGATTTTTTTTCCCCTTATTTGATTTTTGGGATGCTGCATTGCCCTCTAAATCCAACCCTGTTCTCTCTCCTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTNGAGAAATCCGATATAGGTATGTTTATTAATATCAGCTCTAATGGATGCATACAGAGGACCAACTGTTTGATAACCACTACTTTTTTCGATTTTCAAATTTTGACTTTGATTTTGAAGGCATATGTTAAAAATAGATACCAAAACAAAGAAACCCATAATGTTTATAAACTTAATTTTCAAAAACTCAAAAAAAATGGTGATCAAATGGGGCCTTAGTTTTTGGTTTTTGAAAATTCGTTTTCTCACAACCTCTTTACCATGATTTTTCATTTTCTCAAGGAAACATTTGAATTCTTGGAAAACAAAAACAAGTTCCAAAAAACCATGGGTCGTTTGATAGCCAGTTGGTTTTCGCTTTTTCTGTTTTTGTTTTTAGTTTTTTAAAGACATGTTTAGTAACCAATTCATTTTTAGTTTTAGAATTAAAATAATGCTTTTCAAATTCAGAGGAATGTTGAAAACAGACAAAAATAGTTTTTTAAAAATTAATTTTTTGTTTTCTTAATCTCATTCACCACTAATGGCCTGATGTTGGGTGGAGGCATGGCATATGGAACGCAACATTTTTTTCTTAATTTTTTTTTGCAGTGACACCTTTCTTTTTTGAATGGTTACAAAATTGATTTATTTTCTTTATTATATTATTTAAATACTAGCAACTTTGAAGCGAGACGTAGAGGTGCATGTATTTGTTTGTGGGCTTTTTGAAACAATTAGCATAGTTTGGGATTGGTGTAGCTTTTGCTAGAATTGTGCTTTTTGAAAATTAGTGTTTAGGTAAATTTCAGCTTAACCTAAATTAAAAAGACAGGTTATAATTTTTGATACAGGAATACTAAATTGTTGTGATTTAGCTATAATGACTAAGTAGACATACGTCAAAATTTTTTTAATTTTTTAATTTTTTTTTTCAAATTTTGTTAATGTTCGAAATTTACAGAAAGAATGTGTTATTCATGATACTTACAAAAGACCTTCCCAATTAACAAGGATAGAGGTATGACTATATGAAGCAAAAGAATTAGACAATTTACACCAAGAATTGTCTTGGTAAACAACACTCTTGAAATACCTAGTACGAGTTTGCGTCTTTTCTATCAAAACTGTTTGATTTCACTCTTTCCAAAGATTCCAAAAGAAAAACCATGGCTCATTGGAGCTTTTGCATTCTTGAAAGGGTGGTACGTTAAAGACCATGTCTAGTAAATCCTTAACCTCCCTAGGAATAAAGAGGTGTGCCCTACGAAGATATTGAAAATCTTTATCTAGAAGTTATAGTCATATGTACACTGTATAAACAGTTAGTTTCATGATTCGTTGTCTCTCTTGCATAAAAGGCACCAATTGGGAAATAGAGTCATGTAGGACCTTTTTGTAGGTTTTCATTTGTGCTAATGGCTTTGTACGCAATTTCCCATTGAAAAAGACTTCACAGTTTTTGGGTGATTTCCTTTCCATACTGTCTTTCCTAGTACGGGGTTTATGAGTTCTGTCTTTTCTCCCATACCCATCATCAAGGATTTTGGGGAGAAGACCCCACACTAGAAAGTCATTTCATCATAAAGGATTTTGCATATTTTTTATTGATTATAAAAGATATGTTTTTATGTGTTCCGTTTATATTTCTACCATGTTTGCTCTAAATTATTTGTTAAATATTAAAGGAAAAGGTTATAATTTTTTTTTTATTTATAAAAACGATACCAGCATTGTTTACTCAAAGAATGGTTGCATTAAAATATTCAATTTGAAAAATTAGGAGATCAGGAGTTGGTTATGCTACATACTAGATTTATAAAAGTAATCTAAATATCTTAAATTATAAATTGAAAGTTTATTAAGGGAGGCACCTGATTCTGCAGGAGTCTAATTTTCAAAACTAGCAGGGAACAAATCATGTGAATCAAAAATGATTTTAATGGATTCGTTCCTAAACAGTTTTACCAAATACAATAAGTGGTTAAGATTTTTCTGTAATCGCATTTAACTCTCTTAAAATCCATATCAAATGCAACTTAGCCTTAAAACAGGCCATTCAATGTACTATGTCATCAATGCCTATAAAATTTTAAATGCACTACAATATTTCTTATTACTAAAGGGAATAAATTAACTCGCTACATTTTCTATTTCAGTTGCACGCATTCGTGGAATATGAATCTGTTGTGCTGGCTGAGAAGGCTGTAAGTGCTTTCTATTCTAGTCTTTTTCATTCTTGTGAAGGGAACTCAGATGTAAAGGAAGTTTCTTAATTTTTCAGGTTGCAGAATTAAATGATGAAGGGAATTGGAGAAATGCACTTAGGCTTCGTTTGATGCTTACATGCACGGTACTTAATCTAAGACTAGCATATTTTTTTGCTTGTATTTGATTTGCTTTTTGGTGCATTTTAATTTTAATTTTTTTTTGTTTATAAACACACATATAAGTAACAGGGCAATAAAAGTAATTGAAAAAAAAAAAAAAAAGGATATGCACCAGAAAGCAAATCAAATACATGGAAAAAGCCTCTGGACATAGCTTAGTATACTATGTACTGCATTTCGGGTGGCTGATTGGATTGCATGAAGGTTATTTCTATTCTCTCTTATTCAAAGTTAATAAAGAGTTGCACAAAGGGCTAAAGCATCATATTATTTTTGTTTTGTGGAATAAGTAGGTCCAAGTCTAACTAAATCCCAAGATATTAGGTAATAATAAATCCCTAGATACTAGGTAGCAATAAATCTAAATAAATTAGAGAGATACTATGTAACAATACTATGTAACAAATAAATTAGAGAGATCAATTACTTACTGGGATTTGATGTAACAAGATAAATTAGAGAGATCAATTACTTACTGGGATTACACAAATATCTCTTTAACTTAAGCTAATCGTTCGACACTCCCTCTCAAATATCATTCATTCCTAACTTGGATACTCATGAAGTACTAAGCTATGAAGTCTTTTTTTTAGCTCATTTGCAACTGAAGTCGTGAGAACATGTAACTCATGCATGCTATCTCCTTAGAGCACTTCGATAGGCGTGCTTGCCTCTCTTGTGTTCACTTCTTTTGGAGCACTGTCACATGCATTGCTTGTCTCTTTCGTGCTTATTCCTCTTGGAGCCCTTCCATGGGCGCTGCTTGCCTCTTTCATTCTCACTCCTCTTAGAGCACTTTCATGAGCGTTGCTTGCTTCTCTCGTGCTCACTCCTTTTGGAGCACTTCCATGGAAGTGAACACGAAAAAGGTAAACAACGCTCGTAGAAGTGCTCCAAGAGGATCGAGCACGAGATAGACAAGCGACGCCTGTGGAAGTGTTCCAAGTGGAGTCATCATGAGAGAGACAAGCGACACCTGTGGAAGTGCTGAACTCTCCCATGGAAGTGCTCTAAGCAGAGTGAGCACGAAAGAGGCAAGCAACGCTCGTGGAAGTGCTCCAAGAGGAGTGAGCACTAGAGAGACAAGTGATGCCCATGAAAGTGCTGCAAGGGGCATGCATGAGTTTGAGCTCTCACGACTTCAACGGACAGATGTGCCAACAAAAAAAAAAAACTTCATAGCTTACTATTTCATGAGTTAGTAGTAATGAATGAGAATGAATGATACCGATTACTTGGGTTGAGGGAAATATTGAAGTATTAACTTATATTAAAGAGATATTTGTGTAATCCGAGGGAGTAGTTGATCTCTCTAATTCATCTCTATAGTTACCTACTCTCGAGGGATGAATCTATTTAGATTTATTGTTTCATAATATTTAGGGACTGAGTTAGATTTATTGTTACCTAGTATCTAGGAATCGGGGTAGATTTGTTGTTGTCTAGTATTTAGGGATTTAATTAGCCTTTCTATATTATAAAAGTAGAAAGGCACATGTACCTCTTTGAAATTTAATAAGATAATCAGCAAGAGAGGATTTTGGGAACGTTGTTTGATCAGAAGATTTTTCCTTTTGCATCAGATTGAACAGATCTATAAAGAGGAGGAATAGGGGTCCATCTCTGCCCATCAAAAGGCTGAAAGAATTTCTCTAAAGTCTTAAGTTATTGGAAATGACCATCAATGTGCAACACATTCTAAATGAGAAAAGTCGGATTAAGTTGTTTAGATAAGGGGATAAGAATACATACTTCTTCGTAGGTGGGCTACAACGAGGAACAGTCAAAGTTTTATTTCTATGATAGAAAGTGAAGATGGGCATTTTCTCTCCATAGAAAAGGAGATAGAAGATGAGATCATTGGGTGCTTCCAGAAGTTGTACTCCAAAGATAATGGCCAAATCACCAGGGAAGCTCAGAAGACAAAAGACCAGGAAGCAACAGAAAAACCAGCTCCCAACAGAATAAACCAAGAACAAACTTTAAAGAATTCTGAAGGATAGAGTGAACAACCAATAAGAGCCGAAACCCCAACAAAACCAGAAGAAAAACAACAATGAGAGCCTTGGAGAAGAAGCTGTTGAAAAAAAAACTTGGAGAAGGAGCTACCAAACTATACCCAAACACTGTTTCCATCAGAATTCGTGGAAGAAATTTCACAAAACTCAAGGCCACAAGCCTGAATACGAGATGTAAATTTTCTAGGTATAAAGGATGGATGGTCACATTCCTGAAATAAATAATCTATATCTTCAAATAAGAGTCTTCAACCACAATATCAAAAGATGGTTTGATTTTCTCCATTCAATCTTCTCATCACACACCAATTTGGGAACGTGGAGTAATTCAACCATTTCCAACGCACCCTATGTCTAGCTTTCCTTGAATGAAGACCCATATAAAGACTGAGTTGAGGAATTACTGAAAACTGACCAGGACTTGGGAGTCCTCTATATTCGAAGGTTGTTTTTCTCAAGAAGGCTGTAAAGCTCAATCCGCACAAGAGTTTTGTCATCGATCAAATTCCTCCTTAAAGGAACAACCAAACTATTAGTAGACGTAGACCAACATTGATTAATAAAGTTCATTGAAGAAGCAATATAGTAAATTCTTGGGAACAAAGATTTAATGGCAAAATCACCAATCCACATATCCTCCCAAAACCAGATTTTTCTTTTTTCATCCTTTACAAGGTTAATTTTAAACCATTTCATAGTTTTACACAAGCCACAAAGATGGATTTCCAAGGACCTTTGCATGGCCCAGGTATTATGCTTTGTAATCCATTCCTCAAAGGAATATCGGCCGACTATAACCTCCTTCCATAGGGTACTATTTATTTTTATGAATCTCCACCCCCATTTCTAAAATAGGCTGTGATATTTTTGCTCTTTAAATTATCTATACCAAGGGCTCCTTTACTAGTGGGAAGAGATGTTATTTTACAATTTACAAGAGTGCTACCATTTTCTTTAGCCACTCCTTCCAAAAGAAATCACAAATAGATCTCCAAGCTCCTTAGTACTTTCTTAAGGCATTTAAAAATAGAGAGATAGTAGATTGGGATGCTAGTAAAGACTGCATTTGTGAGTTTAAGTTCCCCCCACTAGAGCAAAGGAAACTGCACCACTTTGCGAGTTGATGCTATTTTCTCCTCCACTGGAGCCAAGAATTTGGATCACTCCCAATGGCACTCTCTAGTCGGTCATAGGCCAACTTACCAATGTCACATCCCCAACTCTTAGCCACCTCCCTTTATTCACTTTCCTCCAAATATATGCCTGAAATGATAGTCTTTTGTTGGTTGATTTTGAGCGTAGAAACCAATTTATCAACAATCTGAAATCTTCATCAAAATTTTAAGTATCTCACCATTAAATTTTGAGATAAGGAGGATGTTGTTAGCGAATTGTAAATCACTCACATAAGTTTGATTTCTTCCCACCTCAAAGCCATTAATACAACGCCTTTCTTATGATCCTTCTCTAACATAACTTTCATTACATCAATAACAATCACAAAGAGGACGGGGCTAAGGGCTAGGGTCCCCTTACCTCAACCCCTTGAGGCCTAAATAAACTCTCTTAGCCTTCCATTCACAAAGATTGAAAAGAATGTGTTAGTAATACAACCTTTTATCCTGCCTATATCTATCTTTCACCAAAACCTTTATTTTGAAGGACATCCAACAAGAAATCACAATATACCATGTCATAGGCTTTTTCAAAATCAAGCTTGATAACCCAAACTTTCTTGTTTTTGCCCCTTTAGTTGTCCGCCAACTCATTTGCAACAAGGATTGAAAGAGGTTTGAGGCAACATTGCGAACTTCTTAGTCTTGATTAATGGCAAGGCTAGGGGAAAATTTATAGTTGAAAGAGGTTTGAGGCAACATTGCACTATAGTTCGGGATAAGAAACTTAATACACAGATGATGCCGATTTTCTGTTAGGATTAGGAGACTGTGAGGGTTGCTGATTCTTAGGATCTTCTTGATTGGAACGGGTTTAACTTTGACTTCATCAAAGTTGTTAGTGGTAAGGCATAAATGTGGAAGAGGTTTGGGATATGCCATATCCCATTGGGTATCAAGCTGAGGTTCACAACTTGAAAGCTAAATTGGATGTCCACGGGGTAGGGCAGGGAAGGGAAGCCTTTCCCATCCTTGTCCCTGTCACCTTTTTCAATCCCCATCCTCACAAAAATTTCTATTTATTTTCACAGAGATCAGAGCACGCATTCCCCATCGGGAATTCGTGGAGATCAAATTTTCCACGGGAAATTTTCCCTGTTTTGTATATTTAAAAATATATATTCATTTTTAAGAATCTTTTTAATGGACAATTTCCTTTTTTCAATGTAATTTCTATTAATAAATGTTAAACATCCTAATAAGTCTAATCATATTTGTTGTACCAATATTATTTCTAAAAATTTAATACATATATTGTAACGACTCAATTTTTGATACCTTGAATTACAGGTCGGCATGTGTACTCAATGGTAAAAAGGGCGGTGAAATTTTCTTTTGTAAAAAGGGACAAACAATATTCGCGGAGTCAAGTCAAAACGGTTTACAAAATACATAAGTTTCAAGAAGCAGCATTTAAAATAATAATGTGCTATTTATAGCAAGAGGACGTGAACCATTTTTTATGGGAGTGCCCTTTTGTTTGTTTCCTCTGTAGTCAGTTTTTCAAACCTTCAGGATTGTTCTAGCTTGTAACCGGGGTTGTTTATGTTTATTTAAGGAGGTTTTCCTGAATCCTCCTTTTTGAGATAAAGTCTTGTGGCAGACTTGCTTTTTTGCCATTTTGTGGGCATTTGACTTTAGAGGAATAGTAGAATCTTTAGAGGGGCTAAGAGGTTTGGTGAGGAACTGTTAGAGGCGATTAGGTTTAACTCATCTTTGTGGGCATCCAATCGGTTTTTTTTGTAATTATTCATTTGACATCATTCTTTTGATTGGGATCCAATCATATAAATAGTTTTGGGTATTTTTATTGACATTCTTTCATTAATCTTAATGAATGCTCACTTTCTTATTAAAAGAACTATCAGCAATTGGAAAAGCGTTTGTCAACTAGTTTCCTTGGGGAGGGGTTTCCTCTACCCCTGATCCTTAGGTTGTCTCTTTTTGGTTTTTGTTGTTTCCTATAAAAAAAGTTGATAAAGAGTACCAAACAACATATTGGCTATGGTAAGGTGTTTTATTTACATTATAAAGATTTTTTGTGCTTTATGTATGCAAAAACGTGTGCTAGTTCCAAATCCAAAATATGAAGTTTTGTTCTTTTTTGCTTTTCTTTTTCCTTTTTCTTTTTGTTTGTGCGTGTGTTCTAATTAGAAACTTCATTGTTGCTCACAGTCAAAATCTGCTCCACCGCGTGGGAAGAAGGGACATAATGGGGAGATGAACTGCAAAGATGATGATACCTCTGAACAACCACATATTGAGAAGCATGTTGATGACCTTTCTGATCAAGCTGATGTTCATCCGCATGAACAAGTACAATTGAACTTCCTCTAAGCTTCTTTAGATTCCTGGAATATCTAAAATTAATGCCCTTTCGCTTTATTTTCTTAAATTATCTTTTAATGGATGGAGTGAAGAGGAGCAGATATTACCATGAAATGGACAATGGAGGATATTAGGAATGAGAAAAGAGAATGTATATGTCATCACGACAGAGAGGAGAGAAAAGGAAGGAATAACCAGTAAAGATAAGTTGTTTAAGAGGGCTTTAGGAGTCTGCTGAAAGTATGTTGAGGGAAACAAAAGGCAATTCTTAAACGATTAATTGTTCAAAATGAATAGGAGTCGACCCTAAGGGGGTGATCAGTTGACGGTGGGAGGCTTGAGGATTACAAGGACTTGCAACTATGGATGTAAAAAACTTCATTATATAGGTTAGACAGCTTGCAAAAATAGAGAAATAAATGTGAACGATTATGCCGGATGGAGAAGCCGAAAGGATAAATGACGATATCTATTTTGTTTGGAATACATGGGTCAAATCCTGGTGAAAAGTCCAACAGACTCAAGAGTTAAAACTACTGCAGTACATATGGCCTAGATGTTACGTGACAGCAACACAGAAATTGAAGCCAATGCTTCAAAATAATTTTTAGGCTTGTTTTGAGAAGCTCAAATTTTTAGGCTTGAAACTTGCACCGTCTCTGTACTAAGAGAACACTGAAGATAAAAATTTGGATAACTATTTGGAATGTTTATCTAAGTTTGACAGTTGATAGGATTATACATCGATCTAATATATCTTAATTTTACTTTTATATGGTCTATTCAAGAATTAAAAGCTTCAAGGTGATAAAATCCTATCCTTTGTGTGAGTAGGTGGACGTGCTCTTGCAGAATGGGTGCTCTCTTGCTTGCCTACTTACATTGTGTTGATCTTCCTAATGTTACAATAAGGGATATGAAGATTGGAAAGAAAGCTGAGAAATTTTGTGGGGAGGGAACGCGAAGAAAATTAAGCTAGTTGGTTAATTGAGAAATCACTTCCATACGAAATGATAGTGGAGGTGGGATTGAGAACTTGAAAAGGAGAGAATGGAGACTTGGGCAACCAAATGTCCAGGAGGTTCTTTAATGAAACAATGGAACAAAGTAATTGCACCCAAATTGGAGTGTTTTCTGTTAACTTCCTTGGTGGAGGTTATATTGTTATAGTATGTCTAAATTACTAGCATTTATGCTTGAAGACCAACACGGTAGGAGAGTCCAGGTCTTTTGAGGAGTTCAACAGTTTTGTGCTCTCTTTATTTTACAAATTAATGTGAAAGGGTTCTTTAGAACCGATTTGTTGGTAACAAGGGTCTATGTGGGCAACAAGTTTGAAAAGTAAAATCTCATCAGGGGACAGTCGGAGAGTGCGAAAAATTCTTGAGGTTAAGAAAATGTTGGCATCCTTAGTTGAGGGAGTGGGGAAAAATTGGGCAAAGAAGAAGCTCCAGTGAAGCAAGAGAACTTAGGTGAGTTAATGGAATTGTGGGGGAAAAAGGGTACTTAATTTGGTAAAGATGATGCATGGTTGACATAATAGGAAGATGGATTTAAGCCCATGTTTTCCCCTTTGAAAAGCATGAAGCTCATCCTCTTGGACTCATGAGAGATATCCAATTGGTAGGCAGATCAAAGCTGTTGAGAACGAACCTGGATGGTTATTTTTATCATCACTATTAGCTTGTATGCCTAAGGAGGAACTTGAAGACCCGATTTTTTATATTCGTTCCTTGTCAGCTGCGTTCTTTACTGCAAATATTGAACATGAAATCAAGCAATCTGAGATTCGACTTCTAAGTTACGTGTTTTGTCTACTGCCATCGATACATTGCAGCATTTATTAGATGCTTCATTTCTCTAGATGTATTAAGCGCTGGGACTTTTCTTTAACCAGTAATTCTATTCTCCTTTCAGGGATGCCTATGTGGGGTTTGTATCTTTTGAGCTTTGTTGATATCTTTTCATTTATTTTCATTCCTTCAATGAAATGCTTTGTTTCTTCTTACAAAAATATTGGTAATACGAAAGTTGTGGTAAAGAAAACTCGCTTACTTATTAGGTTGGAGTCCTTTCCTGTAGGTAGTTAAAGACTCCTGTCCTACATTCTTTCATCTTCTTTATTTCGCTTGTTCTCTTACAGAAAAGAGAACTTGAAGCATATTATACTTGTTCCATCATGGAAACCCATTTCTGTCTCTTTACTGTTATGTTTGTTGCAGCGAGAGGAACAGGGAAACGAAAAAGATGGAGGTGGGCAGAGAAGAGTCCGAAATAGGGTACGTGGTAAAGGACGTGGTCGATCACAGTACCACCATAATCACAATAATAACCATGGGAATCACGTGGGAACTCCGCCTTCGAGTAGCTCTAGCAGCATCGAACAGGCAGGTACAGTGAAGCAGCAGCCTCCAGGGCCACGAATGCCAGATGGAACAAGAGGATTCTCCATGGGGCGGGGAAAGCCAGTGAGTGTGAATATGGCTTGAAAACCAAATTTGGAATAGGTGGAGGGGGAGGGGAAGGGGAAGGGCAAAGGGTAAAGGGCGAAGGCAGTGCAATGGTGTTGATGGCAGGGTTTTTAAAGTAGGGCTGTCAAAGAAATCCATTGTAATTACAATTACAATGAATGGGTGGTGGTATGGTTCAACAAGTATAAGAGAGAGTTATTAGTTCAAAATGTATTTGGAAAGGTTCCCTCCCTCCCTATCCCCAATCTCCTCCTATTTCCTTTAGGGATTAATTAATTAATGTGAAGAATATTATTATGATTATTATTTTGAAGTTATCTGTGAAAACCAATGGGGAAGGAAGTTGGCAACACTCTTCTACACCAATTAATACGCATAATGGAAACCTGCTCATTGTGTTTGCTATAGCTCGCTTTGACATTTGTTATTTATTGACCTTTAATCAGCTGTTTTGCTATGCTTCAAAG

mRNA sequence

ATGGCTCACCGTTCTTCCTCTTCCCCTTCCCCTTCCCCCTCCCCTCCTCTCCCTTCCCAATCCGATCCATCTCTTTCCCGGAACTCTTCTCTCAGCCGTCTCAACGCCCAGGCTCCTGAGTTCGTCCCCACTCGCTCCTCCCCTCGTCCCGATCTACAACCTCCGCACTCCTCCTCTGGCTCTCAGCCTCCTCCTCCTCCTACTCCTTCCTCCAAGCAATCGCCTCGGATTCTCATTCCTTCTCCTCCTCCGCCGCCGGCCGTGATGCATCCTCCGGTTGAGTCCGACTATGGTGCTCCGTCTAGGACTAAACTCACTGAGGAAGTTTCCCAGAAGCTTTTGAATCAGGTGGAATATTATTTCAGTGATTTAAATTTGGCAACTACTGATCATTTGATGAGGTTTATCAATAAAGATCCCGATGGATATGTGCCTATATCGGTTGTTGCATCATTCAAGAAGATTAAGGCTCTCATTAATAGCCACTCTCAGCTAGCCAATATTTTGCGCAACTCTTCTAAGCTTATGGTTAGTGAAGATGGAAAGAAAGTTAGACGCAAACAACCACTTTCAGAGTCAGATATGGAGGAGCTGCAATCTCGCATAGTCATTGCGGAGAATTTACCTGATGATCATTGCCACCAAAACCTCATGAAGATTTTTTCTGCTGTTGGGAGTGTTAAAAACATTCGAACGTGTCAACCTCAAATCTCAGATAGTGGAACTTCTTCAACATCTAAATCAGCCAAAGCTGATGGAATGCATTACAGTAACAAGTTGCACGCATTCGTGGAATATGAATCTGTTGTGCTGGCTGAGAAGGCTGTTGCAGAATTAAATGATGAAGGGAATTGGAGAAATGCACTTAGGCTTCGTTTGATGCTTACATGCACGTCAAAATCTGCTCCACCGCGTGGGAAGAAGGGACATAATGGGGAGATGAACTGCAAAGATGATGATACCTCTGAACAACCACATATTGAGAAGCATGTTGATGACCTTTCTGATCAAGCTGATGTTCATCCGCATGAACAACGAGAGGAACAGGGAAACGAAAAAGATGGAGGTGGGCAGAGAAGAGTCCGAAATAGGGTACGTGGTAAAGGACGTGGTCGATCACAGTACCACCATAATCACAATAATAACCATGGGAATCACGTGGGAACTCCGCCTTCGAGTAGCTCTAGCAGCATCGAACAGGCAGGTACAGTGAAGCAGCAGCCTCCAGGGCCACGAATGCCAGATGGAACAAGAGGATTCTCCATGGGGCGGGGAAAGCCAGTGAGTGTGAATATGGCTTGAAAACCAAATTTGGAATAGGTGGAGGGGGAGGGGAAGGGGAAGGGCAAAGGGTAAAGGGCGAAGGCAGTGCAATGGTGTTGATGGCAGGGTTTTTAAAGTAGGGCTGTCAAAGAAATCCATTGTAATTACAATTACAATGAATGGGTGGTGGTATGGTTCAACAAGTATAAGAGAGAGTTATTAGTTCAAAATGTATTTGGAAAGGTTCCCTCCCTCCCTATCCCCAATCTCCTCCTATTTCCTTTAGGGATTAATTAATTAATGTGAAGAATATTATTATGATTATTATTTTGAAGTTATCTGTGAAAACCAATGGGGAAGGAAGTTGGCAACACTCTTCTACACCAATTAATACGCATAATGGAAACCTGCTCATTGTGTTTGCTATAGCTCGCTTTGACATTTGTTATTTATTGACCTTTAATCAGCTGTTTTGCTATGCTTCAAAG

Coding sequence (CDS)

ATGGCTCACCGTTCTTCCTCTTCCCCTTCCCCTTCCCCCTCCCCTCCTCTCCCTTCCCAATCCGATCCATCTCTTTCCCGGAACTCTTCTCTCAGCCGTCTCAACGCCCAGGCTCCTGAGTTCGTCCCCACTCGCTCCTCCCCTCGTCCCGATCTACAACCTCCGCACTCCTCCTCTGGCTCTCAGCCTCCTCCTCCTCCTACTCCTTCCTCCAAGCAATCGCCTCGGATTCTCATTCCTTCTCCTCCTCCGCCGCCGGCCGTGATGCATCCTCCGGTTGAGTCCGACTATGGTGCTCCGTCTAGGACTAAACTCACTGAGGAAGTTTCCCAGAAGCTTTTGAATCAGGTGGAATATTATTTCAGTGATTTAAATTTGGCAACTACTGATCATTTGATGAGGTTTATCAATAAAGATCCCGATGGATATGTGCCTATATCGGTTGTTGCATCATTCAAGAAGATTAAGGCTCTCATTAATAGCCACTCTCAGCTAGCCAATATTTTGCGCAACTCTTCTAAGCTTATGGTTAGTGAAGATGGAAAGAAAGTTAGACGCAAACAACCACTTTCAGAGTCAGATATGGAGGAGCTGCAATCTCGCATAGTCATTGCGGAGAATTTACCTGATGATCATTGCCACCAAAACCTCATGAAGATTTTTTCTGCTGTTGGGAGTGTTAAAAACATTCGAACGTGTCAACCTCAAATCTCAGATAGTGGAACTTCTTCAACATCTAAATCAGCCAAAGCTGATGGAATGCATTACAGTAACAAGTTGCACGCATTCGTGGAATATGAATCTGTTGTGCTGGCTGAGAAGGCTGTTGCAGAATTAAATGATGAAGGGAATTGGAGAAATGCACTTAGGCTTCGTTTGATGCTTACATGCACGTCAAAATCTGCTCCACCGCGTGGGAAGAAGGGACATAATGGGGAGATGAACTGCAAAGATGATGATACCTCTGAACAACCACATATTGAGAAGCATGTTGATGACCTTTCTGATCAAGCTGATGTTCATCCGCATGAACAACGAGAGGAACAGGGAAACGAAAAAGATGGAGGTGGGCAGAGAAGAGTCCGAAATAGGGTACGTGGTAAAGGACGTGGTCGATCACAGTACCACCATAATCACAATAATAACCATGGGAATCACGTGGGAACTCCGCCTTCGAGTAGCTCTAGCAGCATCGAACAGGCAGGTACAGTGAAGCAGCAGCCTCCAGGGCCACGAATGCCAGATGGAACAAGAGGATTCTCCATGGGGCGGGGAAAGCCAGTGAGTGTGAATATGGCTTGA

Protein sequence

MAHRSSSSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSSSGSQPPPPPTPSSKQSPRILIPSPPPPPAVMHPPVESDYGAPSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGSVKNIRTCQPQISDSGTSSTSKSAKADGMHYSNKLHAFVEYESVVLAEKAVAELNDEGNWRNALRLRLMLTCTSKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQADVHPHEQREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPSSSSSSIEQAGTVKQQPPGPRMPDGTRGFSMGRGKPVSVNMA

Homology

[Close]

BLAST of Cp4.1LG04g00260 vs. ExPASy Swiss-Prot
Match: O80567 (La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2)

HSP 1 Score: 375.6 bits (963), Expect = 7.8e-103
Identity = 274/532 (51.50%), Postives = 329/532 (61.84%), Query Frame = 0


Query: 1   MAHRSSSSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSSSG 60
           ++H  S+S + S S    S SDPSL R+ SLSRLNA APEFVP R++P P  QPP     
Sbjct: 20  LSHSHSTSSTTSAS----SSSDPSLLRSLSLSRLNAGAPEFVPGRTTP-PLPQPPRMII- 79

Query: 61  SQPPPPPTPS----SKQSP---RILIPSPPPPPAV----MHP------------------ 120
             PPPPP         Q P    +L P P  P  V     HP                  
Sbjct: 80  --PPPPPHGMLHMYHHQPPFNTPVLGPVPIQPHLVPVQNHHPHHRFHQHHHHNRHQNQQY 139

Query: 121 -PVE---------------------------------------SDYGA----PSRTKLTE 180
            PV                                        ++ GA     S+T L E
Sbjct: 140 VPVRNHGEYQQRGGVGGEQEPDLVSKKNDRRDHSKRESKNDQVTETGASVSIDSKTGLPE 199

Query: 181 EVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLAN 240
           +  QK++NQVEYYFSDLNLATTDHLMRFI KDP+GYVPI VVASFKKIKA+IN++SQLA 
Sbjct: 200 DSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQLAA 259

Query: 241 ILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGSV 300
           +L+NS+KL VSEDGKKVRR  P++ES +EELQSRI++AENLP+DHC+QNLMKIFS VGSV
Sbjct: 260 VLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKIFSTVGSV 319

Query: 301 KNIRTCQPQISDSGTSSTSKS-AKADGMHYSNKLHAFVEYESVVLAEKAVAELNDEGNWR 360
           KNIRTCQPQ + SG    ++S AK+DG  +SNK+HAFVEYE V LAE+AV EL++ GNWR
Sbjct: 320 KNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKVHAFVEYEIVELAERAVTELSEAGNWR 379

Query: 361 NALRLRLML---TCTSKSAPPRGKKGHNGEMNCKDDD--TSEQPHIEKHVDDLSDQADVH 420
           + L++RLML   T   K    RG+KGH+ ++  ++DD  TSEQ  IEK  DD S + D H
Sbjct: 380 SGLKVRLMLKHQTKEPKQGQGRGRKGHDADVEHEEDDATTSEQQPIEKQSDDCSGEWDTH 439

Query: 421 PHEQ--REEQGNEKDGGGQRRVRNRVRGKGRGRSQYH--------HNHNNNH-----GNH 431
             EQ   E+QGNEK   GQR+ RNR RGKGRGR Q H        H+HN NH     GNH
Sbjct: 440 MQEQPIGEDQGNEK-AAGQRKGRNRGRGKGRGRGQPHQNQNQNNNHSHNQNHNHNGRGNH 499

[Close]

BLAST of Cp4.1LG04g00260 vs. ExPASy Swiss-Prot
Match: Q9LHL3 (La-related protein 6C OS=Arabidopsis thaliana OX=3702 GN=LARP6C PE=3 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 5.0e-57
Identity = 150/346 (43.35%), Postives = 208/346 (60.12%), Query Frame = 0


Query: 86  PAVMHPPVESDYGAPSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVP 145
           PAV  P  ++   + S+  L++++  K++ QVEY F+D++L   + + + I+KDP+GYVP
Sbjct: 122 PAVQFPASQNS-SSSSKNLLSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVP 181

Query: 146 ISVVASFKKIKALINSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIA 205
           +S +AS KKIKAL ++H  ++  LR+SSKL+VSEDGKKV+R    ++ D EELQ R V+A
Sbjct: 182 VSYIASTKKIKALTSNHHLVSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRTVVA 241

Query: 206 ENLPDDHCHQNLMKIFSAVGSVKNIRTCQPQISDSGTSSTSKSAKADGMHYSNKLHAFVE 265
           ENLPDDH +QNL KIF  VG+VK IR C P        S S   K D +  SNK+HA +E
Sbjct: 242 ENLPDDHSYQNLEKIFGVVGNVKAIRICHP------PESNSSRPKGDFL-MSNKIHALIE 301

Query: 266 YESVVLAEKAVAELNDEGNWRNALRLRLMLTCTSKSAPPRGKKGHNGEMNCKDDDTSEQP 325
           Y++ V+A+KAV +LNDE NWR  LR+RL+L C+ KS     K   N +    DD   E P
Sbjct: 302 YDNTVIADKAVEKLNDERNWRKGLRVRLLLRCSPKSVL---KNRRNFDGILIDD---ELP 361

Query: 326 HIEKHVDDLSDQADVHPHE-QREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHH---NHNN 385
             E       D   +H  E Q +  G++ + GG   +  + RGKGRGRS   +       
Sbjct: 362 SYESG----EDSPRLHLTESQLDNDGDDNNVGG---LWGKGRGKGRGRSPRSYAVGGGGR 421

Query: 386 NHGNHVGTPPSSSSSSIEQAGTVKQQPPGPRMPDGTRGFSMGRGKP 428
           + G  +G      S    ++ + K    GPRMPDGTRGF+MGRGKP
Sbjct: 422 SFGIGLGVSLGIPSLGSHESSSPKTATKGPRMPDGTRGFTMGRGKP 446

[Close]

BLAST of Cp4.1LG04g00260 vs. ExPASy Swiss-Prot
Match: Q94A38 (La-related protein 6A OS=Arabidopsis thaliana OX=3702 GN=LARP6A PE=2 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.0e-45
Identity = 126/326 (38.65%), Postives = 193/326 (59.20%), Query Frame = 0


Query: 107 EEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLA 166
           +E++QK++ QVEYYFSD NL T   L+  + ++  G+VPIS +A+F K+K L   H+ + 
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160

Query: 167 NILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGS 226
           + L+ SS L+VS D KKV+R  PL E  + + +   V+ ENLP+DH ++N+ +IF   GS
Sbjct: 161 SALKESSFLVVSADEKKVKRLSPLPE--IRDPKIFTVLVENLPEDHSNENIREIFGKAGS 220

Query: 227 VKNIRTCQPQISDSGTSSTSKSAKADGMHYSNKLHAFVEYESVVLAEKAVAELNDEGNWR 286
           +K++  C P    +    + K  K +      +LHAFVEYE+V  AEKA A LN+E +WR
Sbjct: 221 IKSVSICDP----NAVEESEKGGKKENF-IRTRLHAFVEYETVEAAEKAAATLNNEQDWR 280

Query: 287 NALRLRLMLTCTSKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQADVHPHEQR 346
           N LR++L+     K A  R  +    E++ K+ DT+ + H ++   + + +   H + + 
Sbjct: 281 NGLRVKLLEQAAGKFAQRRPAR---REVD-KEKDTTGRVH-DQTGGEKNKKTREHQNHRL 340

Query: 347 EEQGN--EKDGGGQRRVRNRVRGK--GRGRSQYHHNHNNNHGNHVGTPPSSSSSSIEQAG 406
               N  + DGG  ++ +N  +G+  G+GR Q   NH   +G   GT  SSS  +     
Sbjct: 341 HHSDNPADDDGGNHQKDKNGNKGRVVGQGRRQ---NHQGGNGIGHGTASSSSHPNYHPV- 400

Query: 407 TVKQQPPGPRMPDGTRGFSMGRGKPV 429
            V ++PPGPRMPDGTRGF+MGRGK +
Sbjct: 401 EVSKRPPGPRMPDGTRGFTMGRGKAI 410

[Close]

BLAST of Cp4.1LG04g00260 vs. ExPASy Swiss-Prot
Match: Q7ZWE3 (La-related protein 7 OS=Danio rerio OX=7955 GN=larp7 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.4e-13
Identity = 57/166 (34.34%), Postives = 88/166 (53.01%), Query Frame = 0


Query: 116 QVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNSSKL 175
           QVE++F D+NL     +   I +  DGY+ I+V+ +F ++K L      +A  L+NS+ +
Sbjct: 49  QVEFWFGDVNLHKDRFMKSIIEQSRDGYIDIAVLTTFNRMKNLTADVKLIARALKNSTIV 108

Query: 176 MVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGSVKNIRTCQP 235
            V+++G ++RRK+PL E+  +++ SR V  E LP    H  L ++FS  G V        
Sbjct: 109 EVNDEGTRIRRKEPLGETP-KDVDSRTVYVELLPKTVTHIWLERVFSKCGHV-------V 168

Query: 236 QISDSGTSSTSKSAKADGMHYSNKLHAFVEYESVVLAEKAVAELND 282
            IS     ST  S          K  AFVE+E+   A+KAV  LN+
Sbjct: 169 YISIPRYKSTRHS----------KGFAFVEFETQEQAQKAVEMLNN 196

[Close]

BLAST of Cp4.1LG04g00260 vs. ExPASy Swiss-Prot
Match: Q28G87 (La-related protein 7 OS=Xenopus tropicalis OX=8364 GN=larp7 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.8e-12
Identity = 63/234 (26.92%), Postives = 103/234 (44.02%), Query Frame = 0


Query: 113 LLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNS 172
           +  QV+++F D+NL     L   I K  DGY+ IS++ASF K+K +      +A  ++NS
Sbjct: 40  IAKQVDFWFGDVNLHKDRFLREQIEKTRDGYIDISLLASFNKMKKITTDSKLIARAVKNS 99

Query: 173 SKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGSVKNIRT 232
           S + ++  G K+RR+ PL E   +++ SR V  E LP +  H  + ++F   G V  +  
Sbjct: 100 SVVEINLSGTKIRRRFPLGEKP-QDVDSRTVYVELLPKNVTHSWIERVFGKYGMV--VYV 159

Query: 233 CQPQISDSGTSSTSKSAKADGMHYSNKLHAFVEYESVVLAEKAVAELNDEGNWRNALRLR 292
             P+   +G                 K  AF+E+E+   A KA+  LN+           
Sbjct: 160 SIPRYKSTG---------------DPKGFAFIEFETQEQAAKAIEVLNNPPEEAPRKAGM 219

Query: 293 LMLTCTSKSAPPRGKKGHNGEMNC---------KDDDTSEQPHIEKHVDDLSDQ 338
              T  +K  PP     H+    C         K    + +  +EK  +D  +Q
Sbjct: 220 FPKTVKNKHLPPVEVTEHSITEGCGTEEKKKKKKKKSKARKDSVEKAEEDTKEQ 255

[Close]

BLAST of Cp4.1LG04g00260 vs. NCBI nr
Match: XP_023530713.1 (la-related protein 6B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 790 bits (2040), Expect = 1.13e-285
Identity = 433/517 (83.75%), Postives = 433/517 (83.75%), Query Frame = 0


Query: 1   MAHRSSSSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSSSG 60
           MAHRSSSSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSSSG
Sbjct: 1   MAHRSSSSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSSSG 60

Query: 61  SQPPPPPTPSSKQSPRILIPSPPPPPAVMH------------------------------ 120
           SQPPPPPTPSSKQSPRILIPSPPPPPAVMH                              
Sbjct: 61  SQPPPPPTPSSKQSPRILIPSPPPPPAVMHVYPPPPPGSPFHVPIQSPVPGPVPVPVPTH 120

Query: 121 ------------------------------------------------------PPVESD 180
                                                                 PPVESD
Sbjct: 121 VVSIPNHHYHPHHRHHHHHHSHHVPVLYHPHNPQYYADNGGFHDPDNVVQQPQKPPVESD 180

Query: 181 YGAPSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIK 240
           YGAPSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIK
Sbjct: 181 YGAPSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIK 240

Query: 241 ALINSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQN 300
           ALINSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQN
Sbjct: 241 ALINSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQN 300

Query: 301 LMKIFSAVGSVKNIRTCQPQISDSGTSSTSKSAKADGMHYSNKLHAFVEYESVVLAEKAV 360
           LMKIFSAVGSVKNIRTCQPQISDSGTSSTSKSAKADGMHYSNKLHAFVEYESVVLAEKAV
Sbjct: 301 LMKIFSAVGSVKNIRTCQPQISDSGTSSTSKSAKADGMHYSNKLHAFVEYESVVLAEKAV 360

Query: 361 AELNDEGNWRNALRLRLMLTCTSKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSD 420
           AELNDEGNWRNALRLRLMLTCTSKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSD
Sbjct: 361 AELNDEGNWRNALRLRLMLTCTSKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSD 420

Query: 421 QADVHPHEQREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPSSSSS 433
           QADVHPHEQREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPSSSSS
Sbjct: 421 QADVHPHEQREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPSSSSS 480

[Close]

BLAST of Cp4.1LG04g00260 vs. NCBI nr
Match: XP_022928061.1 (la-related protein 6B-like [Cucurbita moschata])

HSP 1 Score: 780 bits (2015), Expect = 6.27e-282
Identity = 429/514 (83.46%), Postives = 431/514 (83.85%), Query Frame = 0


Query: 1   MAHRSSSSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSSSG 60
           MAH SSSSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSSSG
Sbjct: 1   MAHHSSSSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSSSG 60

Query: 61  SQPPPPPTPSSKQSPRILIPSPPPPPAVMH------------------------------ 120
           SQPPPPP PSSKQSPRILIPSPPPPPAVMH                              
Sbjct: 61  SQPPPPP-PSSKQSPRILIPSPPPPPAVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTHVV 120

Query: 121 ---------------------------------------------------PPVESDYGA 180
                                                              PPVESDYGA
Sbjct: 121 SIPNHHYHPHHRHHHHHSHHVPVLYHPHNPQYYADNGGFHDPDNVVQQPQKPPVESDYGA 180

Query: 181 PSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALI 240
           PSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALI
Sbjct: 181 PSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALI 240

Query: 241 NSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNLMK 300
           NSHSQLANILRNSSKLMV+EDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNLMK
Sbjct: 241 NSHSQLANILRNSSKLMVNEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNLMK 300

Query: 301 IFSAVGSVKNIRTCQPQISDSGTSSTSKSAKADGMHYSNKLHAFVEYESVVLAEKAVAEL 360
           IFSAVGSVKNIRTCQPQISD+GTSSTSKSAKADGMHYSNKLHAFVEYESVVLAEKAVAEL
Sbjct: 301 IFSAVGSVKNIRTCQPQISDTGTSSTSKSAKADGMHYSNKLHAFVEYESVVLAEKAVAEL 360

Query: 361 NDEGNWRNALRLRLMLTCTSKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQAD 420
           NDEGNWRNALRLRLMLTCTSKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQAD
Sbjct: 361 NDEGNWRNALRLRLMLTCTSKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQAD 420

Query: 421 VHPHEQREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPSSSSSSIE 433
           VHPHEQREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPSSSSSSIE
Sbjct: 421 VHPHEQREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPSSSSSSIE 480

[Close]

BLAST of Cp4.1LG04g00260 vs. NCBI nr
Match: KAG6588510.1 (La-related protein 6B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 774 bits (1998), Expect = 3.04e-279
Identity = 429/520 (82.50%), Postives = 431/520 (82.88%), Query Frame = 0


Query: 1   MAHRSSSSPSPSPSP--PLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSS 60
           MAH SSSSPSPSPSP  PLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSS
Sbjct: 1   MAHHSSSSPSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSS 60

Query: 61  SGSQPPPPPTPSSKQSPRILIPSPPPPPAVMH---------------------------- 120
           SGSQPPPPP PSSKQSPRILIPSPPPPPAVMH                            
Sbjct: 61  SGSQPPPPP-PSSKQSPRILIPSPPPPPAVMHVYPPPPPGSPFHVPIQSPVPVPVPVPVP 120

Query: 121 ---------------------------------------------------------PPV 180
                                                                    PPV
Sbjct: 121 VPTHVVSIPNHHYHPHHRHHHHHSHHVPVLYHPHNPQYYADNGGFHDPDNVVQQPQKPPV 180

Query: 181 ESDYGAPSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFK 240
           ESDYGAPSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFK
Sbjct: 181 ESDYGAPSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFK 240

Query: 241 KIKALINSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHC 300
           KIKALINSHSQLANILRNSSKLMV+EDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHC
Sbjct: 241 KIKALINSHSQLANILRNSSKLMVNEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHC 300

Query: 301 HQNLMKIFSAVGSVKNIRTCQPQISDSGTSSTSKSAKADGMHYSNKLHAFVEYESVVLAE 360
           HQNLMKIFSAVGSVKNIRTCQPQISD+GTSSTSKSAKADGMHYSNKLHAFVEYESVVLAE
Sbjct: 301 HQNLMKIFSAVGSVKNIRTCQPQISDTGTSSTSKSAKADGMHYSNKLHAFVEYESVVLAE 360

Query: 361 KAVAELNDEGNWRNALRLRLMLTCTSKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDD 420
           KAVAELNDEGNWRNALRLRLMLTCTSKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDD
Sbjct: 361 KAVAELNDEGNWRNALRLRLMLTCTSKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDD 420

Query: 421 LSDQADVHPHEQREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPSS 433
           LSDQADVHPHEQREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPSS
Sbjct: 421 LSDQADVHPHEQREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPSS 480

[Close]

BLAST of Cp4.1LG04g00260 vs. NCBI nr
Match: XP_022969525.1 (la-related protein 6B-like [Cucurbita maxima])

HSP 1 Score: 765 bits (1975), Expect = 7.72e-276
Identity = 425/516 (82.36%), Postives = 425/516 (82.36%), Query Frame = 0


Query: 1   MAHRSSSSPSPSPSP--PLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSS 60
           MAH SSSSPSPSPSP  PLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPP SS
Sbjct: 1   MAHHSSSSPSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPQSS 60

Query: 61  SGSQPPPPPTPSSKQSPRILIPSPPPPPAVMH---------------------------- 120
           SGSQPPPPP   SKQSPRILIPSPPPPPAVMH                            
Sbjct: 61  SGSQPPPPP---SKQSPRILIPSPPPPPAVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTH 120

Query: 121 -----------------------------------------------------PPVESDY 180
                                                                PPVESDY
Sbjct: 121 VVSIPNHHYHPHHRHHHHHSHHVPVLYHPHNPQYYADNGGFHDPDNVVQQPQKPPVESDY 180

Query: 181 GAPSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKA 240
           GAPSRTKLT EVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKA
Sbjct: 181 GAPSRTKLTGEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKA 240

Query: 241 LINSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNL 300
           LINSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNL
Sbjct: 241 LINSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNL 300

Query: 301 MKIFSAVGSVKNIRTCQPQISDSGTSSTSKSAKADGMHYSNKLHAFVEYESVVLAEKAVA 360
           MKIFSAVGSVKNIRTCQPQISDSGTSSTSKSAK DGMHYSNKLHAFVEYESVVLAEKAVA
Sbjct: 301 MKIFSAVGSVKNIRTCQPQISDSGTSSTSKSAKTDGMHYSNKLHAFVEYESVVLAEKAVA 360

Query: 361 ELNDEGNWRNALRLRLMLTCTSKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQ 420
           ELNDEGNWRNALRLRLMLTCTSKS PPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQ
Sbjct: 361 ELNDEGNWRNALRLRLMLTCTSKSTPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQ 420

Query: 421 ADVHPHEQREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPSSSSSS 433
           ADVHPHEQREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPSSSSSS
Sbjct: 421 ADVHPHEQREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPSSSSSS 480

[Close]

BLAST of Cp4.1LG04g00260 vs. NCBI nr
Match: KAG7022340.1 (La-related protein 6B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 749 bits (1935), Expect = 5.23e-271
Identity = 407/457 (89.06%), Postives = 409/457 (89.50%), Query Frame = 0


Query: 1   MAHRSSSSPSPSPSP--PLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSS 60
           MAH SSSSPSPSPSP  PLPSQSDPSLSRNSSLSRLNAQAPEF                 
Sbjct: 1   MAHHSSSSPSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEF----------------- 60

Query: 61  SGSQPPPPPTPSSKQSPRILIPSPPPPPAVMH----------------------PPVESD 120
                PPPP PSSKQSPRILIPSPPPPPAVMH                      PPVESD
Sbjct: 61  -----PPPPPPSSKQSPRILIPSPPPPPAVMHVYPPPPPGSPFHVPIQSPQPQKPPVESD 120

Query: 121 YGAPSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIK 180
           YGAPSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIK
Sbjct: 121 YGAPSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIK 180

Query: 181 ALINSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQN 240
           ALINSHSQLANILRNSSKLMV+EDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQN
Sbjct: 181 ALINSHSQLANILRNSSKLMVNEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQN 240

Query: 241 LMKIFSAVGSVKNIRTCQPQISDSGTSSTSKSAKADGMHYSNKLHAFVEYESVVLAEKAV 300
           LMKIFSAVGSVKNIRTCQPQISD+GTSSTSKSAKADGMHYSNKLHAFVEYESVVLAEKAV
Sbjct: 241 LMKIFSAVGSVKNIRTCQPQISDTGTSSTSKSAKADGMHYSNKLHAFVEYESVVLAEKAV 300

Query: 301 AELNDEGNWRNALRLRLMLTCTSKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSD 360
           AELNDEGNWRNALRLRLMLTCTSKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSD
Sbjct: 301 AELNDEGNWRNALRLRLMLTCTSKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSD 360

Query: 361 QADVHPHEQREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPSSSSS 420
           QADVHPHEQREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPSSSSS
Sbjct: 361 QADVHPHEQREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPSSSSS 420

Query: 421 SIEQAGTVKQQPPGPRMPDGTRGFSMGRGKPVSVNMA 433
           SIEQAGTVKQQPPGPRMPDGTRGFSMGRGKPVSVNMA
Sbjct: 421 SIEQAGTVKQQPPGPRMPDGTRGFSMGRGKPVSVNMA 435

[Close]

BLAST of Cp4.1LG04g00260 vs. ExPASy TrEMBL
Match: A0A6J1EJ80 (la-related protein 6B-like OS=Cucurbita moschata OX=3662 GN=LOC111434957 PE=4 SV=1)

HSP 1 Score: 780 bits (2015), Expect = 3.04e-282
Identity = 429/514 (83.46%), Postives = 431/514 (83.85%), Query Frame = 0


Query: 1   MAHRSSSSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSSSG 60
           MAH SSSSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSSSG
Sbjct: 1   MAHHSSSSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSSSG 60

Query: 61  SQPPPPPTPSSKQSPRILIPSPPPPPAVMH------------------------------ 120
           SQPPPPP PSSKQSPRILIPSPPPPPAVMH                              
Sbjct: 61  SQPPPPP-PSSKQSPRILIPSPPPPPAVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTHVV 120

Query: 121 ---------------------------------------------------PPVESDYGA 180
                                                              PPVESDYGA
Sbjct: 121 SIPNHHYHPHHRHHHHHSHHVPVLYHPHNPQYYADNGGFHDPDNVVQQPQKPPVESDYGA 180

Query: 181 PSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALI 240
           PSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALI
Sbjct: 181 PSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALI 240

Query: 241 NSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNLMK 300
           NSHSQLANILRNSSKLMV+EDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNLMK
Sbjct: 241 NSHSQLANILRNSSKLMVNEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNLMK 300

Query: 301 IFSAVGSVKNIRTCQPQISDSGTSSTSKSAKADGMHYSNKLHAFVEYESVVLAEKAVAEL 360
           IFSAVGSVKNIRTCQPQISD+GTSSTSKSAKADGMHYSNKLHAFVEYESVVLAEKAVAEL
Sbjct: 301 IFSAVGSVKNIRTCQPQISDTGTSSTSKSAKADGMHYSNKLHAFVEYESVVLAEKAVAEL 360

Query: 361 NDEGNWRNALRLRLMLTCTSKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQAD 420
           NDEGNWRNALRLRLMLTCTSKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQAD
Sbjct: 361 NDEGNWRNALRLRLMLTCTSKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQAD 420

Query: 421 VHPHEQREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPSSSSSSIE 433
           VHPHEQREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPSSSSSSIE
Sbjct: 421 VHPHEQREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPSSSSSSIE 480

[Close]

BLAST of Cp4.1LG04g00260 vs. ExPASy TrEMBL
Match: A0A6J1I059 (la-related protein 6B-like OS=Cucurbita maxima OX=3661 GN=LOC111468508 PE=4 SV=1)

HSP 1 Score: 765 bits (1975), Expect = 3.74e-276
Identity = 425/516 (82.36%), Postives = 425/516 (82.36%), Query Frame = 0


Query: 1   MAHRSSSSPSPSPSP--PLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSS 60
           MAH SSSSPSPSPSP  PLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPP SS
Sbjct: 1   MAHHSSSSPSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPQSS 60

Query: 61  SGSQPPPPPTPSSKQSPRILIPSPPPPPAVMH---------------------------- 120
           SGSQPPPPP   SKQSPRILIPSPPPPPAVMH                            
Sbjct: 61  SGSQPPPPP---SKQSPRILIPSPPPPPAVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTH 120

Query: 121 -----------------------------------------------------PPVESDY 180
                                                                PPVESDY
Sbjct: 121 VVSIPNHHYHPHHRHHHHHSHHVPVLYHPHNPQYYADNGGFHDPDNVVQQPQKPPVESDY 180

Query: 181 GAPSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKA 240
           GAPSRTKLT EVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKA
Sbjct: 181 GAPSRTKLTGEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKA 240

Query: 241 LINSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNL 300
           LINSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNL
Sbjct: 241 LINSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNL 300

Query: 301 MKIFSAVGSVKNIRTCQPQISDSGTSSTSKSAKADGMHYSNKLHAFVEYESVVLAEKAVA 360
           MKIFSAVGSVKNIRTCQPQISDSGTSSTSKSAK DGMHYSNKLHAFVEYESVVLAEKAVA
Sbjct: 301 MKIFSAVGSVKNIRTCQPQISDSGTSSTSKSAKTDGMHYSNKLHAFVEYESVVLAEKAVA 360

Query: 361 ELNDEGNWRNALRLRLMLTCTSKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQ 420
           ELNDEGNWRNALRLRLMLTCTSKS PPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQ
Sbjct: 361 ELNDEGNWRNALRLRLMLTCTSKSTPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQ 420

Query: 421 ADVHPHEQREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPSSSSSS 433
           ADVHPHEQREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPSSSSSS
Sbjct: 421 ADVHPHEQREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPSSSSSS 480

[Close]

BLAST of Cp4.1LG04g00260 vs. ExPASy TrEMBL
Match: A0A6J1GLH8 (la-related protein 6B-like OS=Cucurbita moschata OX=3662 GN=LOC111455073 PE=4 SV=1)

HSP 1 Score: 648 bits (1672), Expect = 3.83e-230
Identity = 368/498 (73.90%), Postives = 390/498 (78.31%), Query Frame = 0


Query: 18  PSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQ-PPHSSSGSQPPPPPTPSSKQSPR 77
           PSQSDPSLSRNSSLSRLNAQAPEFVPTR S R DLQ PPHS++G  PPPP     KQSPR
Sbjct: 12  PSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPPP-----KQSPR 71

Query: 78  ILIPSPPPPP-AVMH--------------------------------------------- 137
           ILIPSPPPPP A+MH                                             
Sbjct: 72  ILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHYHRHHRHHHHSHH 131

Query: 138 -------------------------------PPVESDYGAPSRTKLTEEVSQKLLNQVEY 197
                                          P VE+DY APSR+KL E+VS KLLNQVEY
Sbjct: 132 VPVLYHPHNPQYYADNGGFHDPDTVVQQAQKPQVETDYAAPSRSKLAEDVSLKLLNQVEY 191

Query: 198 YFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNSSKLMVSE 257
           YFSDLNL TTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNSSKLMVSE
Sbjct: 192 YFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNSSKLMVSE 251

Query: 258 DGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGSVKNIRTCQPQISD 317
           DGKKV+RKQPLSESDMEELQSRIVIAENLP+DHCHQNLMKIFSAVGSVKNIRTCQPQISD
Sbjct: 252 DGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNIRTCQPQISD 311

Query: 318 SGTSSTSKSAKADGMHYSNKLHAFVEYESVVLAEKAVAELNDEGNWRNALRLRLMLTCTS 377
           SG SST+KSAKADGMHYS+KLHAFVEYESV LAEKAVAELNDEGNWRNALRLRLML+C S
Sbjct: 312 SGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWRNALRLRLMLSCPS 371

Query: 378 KSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQADVHPHEQREEQGNEKDGGGQR 432
           KSA  RGKKGH+GEMNCKDD+TSEQP IEKHVDDLSDQ D+H HEQREEQGNEKDGGGQR
Sbjct: 372 KSALSRGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVDIHLHEQREEQGNEKDGGGQR 431

[Close]

BLAST of Cp4.1LG04g00260 vs. ExPASy TrEMBL
Match: A0A1S3BGU3 (la-related protein 6B isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489697 PE=4 SV=1)

HSP 1 Score: 646 bits (1666), Expect = 1.82e-229
Identity = 368/496 (74.19%), Postives = 383/496 (77.22%), Query Frame = 0


Query: 19  SQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSSSGSQPPPPPTPSSKQSPRIL 78
           SQSD SLSRNSSLSRLNAQAPEFVPTR S RPDLQP        PPPP     KQSPRIL
Sbjct: 8   SQSDLSLSRNSSLSRLNAQAPEFVPTRPSTRPDLQP-------LPPPP-----KQSPRIL 67

Query: 79  IPSPPPPP--AVMH---------------------------------------------- 138
           IPSPPPPP  A+MH                                              
Sbjct: 68  IPSPPPPPPPAMMHGYPPPPPGSPFHVPIQTTPVPVPTHVVSLQNHPYHPHHRHHHHSHH 127

Query: 139 --------------------------------PPVESDYGAPSRTKLTEEVSQKLLNQVE 198
                                           P +ESDY APSR+KLT+EVSQKLLNQVE
Sbjct: 128 VPVLYHPHNPQYYADNGGFHDPDTPVVQPAQKPLLESDYAAPSRSKLTDEVSQKLLNQVE 187

Query: 199 YYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNSSKLMVS 258
           YYFSDLNLATTDHLMRF+NKDPDGYVPISVVASFKKIKALINSH QLANILRNSSKL+VS
Sbjct: 188 YYFSDLNLATTDHLMRFVNKDPDGYVPISVVASFKKIKALINSHFQLANILRNSSKLLVS 247

Query: 259 EDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGSVKNIRTCQPQIS 318
           EDGKKV+RKQP SESDMEELQSRIVIAENLP+DHCHQNLMKIFSAVGSVKNIRTCQPQIS
Sbjct: 248 EDGKKVKRKQPFSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNIRTCQPQIS 307

Query: 319 DSGTSSTSKSAKADGMHYSNKLHAFVEYESVVLAEKAVAELNDEGNWRNALRLRLMLTCT 378
           DSG SSTSKSAKADGMHYSNKLHAFVEYESV LAEKAVAELNDEGNWRNALRLRLML+C+
Sbjct: 308 DSGASSTSKSAKADGMHYSNKLHAFVEYESVELAEKAVAELNDEGNWRNALRLRLMLSCS 367

Query: 379 SKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQADVHPHEQREEQGNEKDGGGQ 432
           SKSAP RGKKGHNGEMN KD D SEQP IEKHVDDLSDQ DVHP EQREE GNEKDGGGQ
Sbjct: 368 SKSAPVRGKKGHNGEMNYKDVDASEQPAIEKHVDDLSDQVDVHPPEQREEHGNEKDGGGQ 427

[Close]

BLAST of Cp4.1LG04g00260 vs. ExPASy TrEMBL
Match: A0A6J1I3E0 (la-related protein 6B-like OS=Cucurbita maxima OX=3661 GN=LOC111470630 PE=4 SV=1)

HSP 1 Score: 645 bits (1663), Expect = 9.61e-229
Identity = 370/500 (74.00%), Postives = 390/500 (78.00%), Query Frame = 0


Query: 18  PSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPP-HSSSGSQPPPPPTPSSKQSPR 77
           PSQSDPSLSRNSSLSRLNAQAPEFVPTR S R DLQPP HS++G  PPPP     KQSPR
Sbjct: 12  PSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQPPPHSAAGPAPPPP-----KQSPR 71

Query: 78  ILIPSPPPPP-AVMH--------------------------------------------- 137
           ILIPSPPPPP A+MH                                             
Sbjct: 72  ILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHYHRHHRHHHHSHH 131

Query: 138 -------------------------------PPVESDYGAPSRTKLTEEVSQKLLNQVEY 197
                                          P VE+DY APSR+KLTE+VS KLLNQVEY
Sbjct: 132 VPVLYHPHNPQYYADNGGFHDPDTVVQQAQKPQVETDYAAPSRSKLTEDVSLKLLNQVEY 191

Query: 198 YFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNSSKLMVSE 257
           YFSDLNL TTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNSSKLMVSE
Sbjct: 192 YFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNSSKLMVSE 251

Query: 258 DGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGSVKNIRTCQPQISD 317
           DGKKV+RKQPLSESDMEELQSRIVIAENLP+DHCHQNLMKIFSAVGSVKNIRTCQPQISD
Sbjct: 252 DGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNIRTCQPQISD 311

Query: 318 SGTSSTSKSAKADGMHYSNKLHAFVEYESVVLAEKAVAELNDEGNWRNALRLRLMLTCTS 377
           SG SSTSKSAKADGMHYS+KLHAFVEYESV LAEKAVAE+NDEGNWRNALRLRLML+C S
Sbjct: 312 SGASSTSKSAKADGMHYSSKLHAFVEYESVELAEKAVAEINDEGNWRNALRLRLMLSCPS 371

Query: 378 KSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQADVHPHEQREEQGNEKDGGGQR 432
           KSA  RGKKGH+GEMNCKDD+TSEQP IEKHVDDLSDQ DVHPHEQREEQGNEKDGGGQR
Sbjct: 372 KSALARGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVDVHPHEQREEQGNEKDGGGQR 431

[Close]

BLAST of Cp4.1LG04g00260 vs. TAIR 10
Match: AT2G43970.1 (RNA-binding protein )

HSP 1 Score: 375.6 bits (963), Expect = 5.5e-104
Identity = 274/532 (51.50%), Postives = 329/532 (61.84%), Query Frame = 0


Query: 1   MAHRSSSSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSSSG 60
           ++H  S+S + S S    S SDPSL R+ SLSRLNA APEFVP R++P P  QPP     
Sbjct: 20  LSHSHSTSSTTSAS----SSSDPSLLRSLSLSRLNAGAPEFVPGRTTP-PLPQPPRMII- 79

Query: 61  SQPPPPPTPS----SKQSP---RILIPSPPPPPAV----MHP------------------ 120
             PPPPP         Q P    +L P P  P  V     HP                  
Sbjct: 80  --PPPPPHGMLHMYHHQPPFNTPVLGPVPIQPHLVPVQNHHPHHRFHQHHHHNRHQNQQY 139

Query: 121 -PVE---------------------------------------SDYGA----PSRTKLTE 180
            PV                                        ++ GA     S+T L E
Sbjct: 140 VPVRNHGEYQQRGGVGGEQEPDLVSKKNDRRDHSKRESKNDQVTETGASVSIDSKTGLPE 199

Query: 181 EVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLAN 240
           +  QK++NQVEYYFSDLNLATTDHLMRFI KDP+GYVPI VVASFKKIKA+IN++SQLA 
Sbjct: 200 DSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQLAA 259

Query: 241 ILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGSV 300
           +L+NS+KL VSEDGKKVRR  P++ES +EELQSRI++AENLP+DHC+QNLMKIFS VGSV
Sbjct: 260 VLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKIFSTVGSV 319

Query: 301 KNIRTCQPQISDSGTSSTSKS-AKADGMHYSNKLHAFVEYESVVLAEKAVAELNDEGNWR 360
           KNIRTCQPQ + SG    ++S AK+DG  +SNK+HAFVEYE V LAE+AV EL++ GNWR
Sbjct: 320 KNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKVHAFVEYEIVELAERAVTELSEAGNWR 379

Query: 361 NALRLRLML---TCTSKSAPPRGKKGHNGEMNCKDDD--TSEQPHIEKHVDDLSDQADVH 420
           + L++RLML   T   K    RG+KGH+ ++  ++DD  TSEQ  IEK  DD S + D H
Sbjct: 380 SGLKVRLMLKHQTKEPKQGQGRGRKGHDADVEHEEDDATTSEQQPIEKQSDDCSGEWDTH 439

Query: 421 PHEQ--REEQGNEKDGGGQRRVRNRVRGKGRGRSQYH--------HNHNNNH-----GNH 431
             EQ   E+QGNEK   GQR+ RNR RGKGRGR Q H        H+HN NH     GNH
Sbjct: 440 MQEQPIGEDQGNEK-AAGQRKGRNRGRGKGRGRGQPHQNQNQNNNHSHNQNHNHNGRGNH 499

[Close]

BLAST of Cp4.1LG04g00260 vs. TAIR 10
Match: AT2G43970.2 (RNA-binding protein )

HSP 1 Score: 342.4 bits (877), Expect = 5.2e-94
Identity = 262/532 (49.25%), Postives = 315/532 (59.21%), Query Frame = 0


Query: 1   MAHRSSSSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSSSG 60
           ++H  S+S + S S    S SDPSL R+ SLSRLNA APEFVP R++P P  QPP     
Sbjct: 20  LSHSHSTSSTTSAS----SSSDPSLLRSLSLSRLNAGAPEFVPGRTTP-PLPQPPRMII- 79

Query: 61  SQPPPPPTPS----SKQSP---RILIPSPPPPPAV----MHP------------------ 120
             PPPPP         Q P    +L P P  P  V     HP                  
Sbjct: 80  --PPPPPHGMLHMYHHQPPFNTPVLGPVPIQPHLVPVQNHHPHHRFHQHHHHNRHQNQQY 139

Query: 121 -PVE---------------------------------------SDYGA----PSRTKLTE 180
            PV                                        ++ GA     S+T L E
Sbjct: 140 VPVRNHGEYQQRGGVGGEQEPDLVSKKNDRRDHSKRESKNDQVTETGASVSIDSKTGLPE 199

Query: 181 EVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLAN 240
           +  QK++NQVEYYFSDLNLATTDHLMRFI KDP+GYVPI VVASFKKIKA+IN++SQLA 
Sbjct: 200 DSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQLAA 259

Query: 241 ILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGSV 300
           +L+NS+KL VSEDGKKVRR  P++ES +EELQSRI++AENLP+DHC+QNLMKIFS VGSV
Sbjct: 260 VLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKIFSTVGSV 319

Query: 301 KNIRTCQPQISDSGTSSTSKS-AKADGMHYSNKLHAFVEYESVVLAEKAVAELNDEGNWR 360
           KNIRTCQPQ + SG    ++S AK+DG  +SNK                V EL++ GNWR
Sbjct: 320 KNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNK----------------VTELSEAGNWR 379

Query: 361 NALRLRLML---TCTSKSAPPRGKKGHNGEMNCKDDD--TSEQPHIEKHVDDLSDQADVH 420
           + L++RLML   T   K    RG+KGH+ ++  ++DD  TSEQ  IEK  DD S + D H
Sbjct: 380 SGLKVRLMLKHQTKEPKQGQGRGRKGHDADVEHEEDDATTSEQQPIEKQSDDCSGEWDTH 439

Query: 421 PHEQ--REEQGNEKDGGGQRRVRNRVRGKGRGRSQYH--------HNHNNNH-----GNH 431
             EQ   E+QGNEK   GQR+ RNR RGKGRGR Q H        H+HN NH     GNH
Sbjct: 440 MQEQPIGEDQGNEK-AAGQRKGRNRGRGKGRGRGQPHQNQNQNNNHSHNQNHNHNGRGNH 499

[Close]

BLAST of Cp4.1LG04g00260 vs. TAIR 10
Match: AT3G19090.1 (RNA-binding protein )

HSP 1 Score: 223.4 bits (568), Expect = 3.5e-58
Identity = 150/346 (43.35%), Postives = 208/346 (60.12%), Query Frame = 0


Query: 86  PAVMHPPVESDYGAPSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVP 145
           PAV  P  ++   + S+  L++++  K++ QVEY F+D++L   + + + I+KDP+GYVP
Sbjct: 122 PAVQFPASQNS-SSSSKNLLSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVP 181

Query: 146 ISVVASFKKIKALINSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIA 205
           +S +AS KKIKAL ++H  ++  LR+SSKL+VSEDGKKV+R    ++ D EELQ R V+A
Sbjct: 182 VSYIASTKKIKALTSNHHLVSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRTVVA 241

Query: 206 ENLPDDHCHQNLMKIFSAVGSVKNIRTCQPQISDSGTSSTSKSAKADGMHYSNKLHAFVE 265
           ENLPDDH +QNL KIF  VG+VK IR C P        S S   K D +  SNK+HA +E
Sbjct: 242 ENLPDDHSYQNLEKIFGVVGNVKAIRICHP------PESNSSRPKGDFL-MSNKIHALIE 301

Query: 266 YESVVLAEKAVAELNDEGNWRNALRLRLMLTCTSKSAPPRGKKGHNGEMNCKDDDTSEQP 325
           Y++ V+A+KAV +LNDE NWR  LR+RL+L C+ KS     K   N +    DD   E P
Sbjct: 302 YDNTVIADKAVEKLNDERNWRKGLRVRLLLRCSPKSVL---KNRRNFDGILIDD---ELP 361

Query: 326 HIEKHVDDLSDQADVHPHE-QREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHH---NHNN 385
             E       D   +H  E Q +  G++ + GG   +  + RGKGRGRS   +       
Sbjct: 362 SYESG----EDSPRLHLTESQLDNDGDDNNVGG---LWGKGRGKGRGRSPRSYAVGGGGR 421

Query: 386 NHGNHVGTPPSSSSSSIEQAGTVKQQPPGPRMPDGTRGFSMGRGKP 428
           + G  +G      S    ++ + K    GPRMPDGTRGF+MGRGKP
Sbjct: 422 SFGIGLGVSLGIPSLGSHESSSPKTATKGPRMPDGTRGFTMGRGKP 446

[Close]

BLAST of Cp4.1LG04g00260 vs. TAIR 10
Match: AT5G46250.1 (RNA-binding protein )

HSP 1 Score: 184.9 bits (468), Expect = 1.4e-46
Identity = 126/326 (38.65%), Postives = 193/326 (59.20%), Query Frame = 0


Query: 107 EEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLA 166
           +E++QK++ QVEYYFSD NL T   L+  + ++  G+VPIS +A+F K+K L   H+ + 
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160

Query: 167 NILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGS 226
           + L+ SS L+VS D KKV+R  PL E  + + +   V+ ENLP+DH ++N+ +IF   GS
Sbjct: 161 SALKESSFLVVSADEKKVKRLSPLPE--IRDPKIFTVLVENLPEDHSNENIREIFGKAGS 220

Query: 227 VKNIRTCQPQISDSGTSSTSKSAKADGMHYSNKLHAFVEYESVVLAEKAVAELNDEGNWR 286
           +K++  C P    +    + K  K +      +LHAFVEYE+V  AEKA A LN+E +WR
Sbjct: 221 IKSVSICDP----NAVEESEKGGKKENF-IRTRLHAFVEYETVEAAEKAAATLNNEQDWR 280

Query: 287 NALRLRLMLTCTSKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQADVHPHEQR 346
           N LR++L+     K A  R  +    E++ K+ DT+ + H ++   + + +   H + + 
Sbjct: 281 NGLRVKLLEQAAGKFAQRRPAR---REVD-KEKDTTGRVH-DQTGGEKNKKTREHQNHRL 340

Query: 347 EEQGN--EKDGGGQRRVRNRVRGK--GRGRSQYHHNHNNNHGNHVGTPPSSSSSSIEQAG 406
               N  + DGG  ++ +N  +G+  G+GR Q   NH   +G   GT  SSS  +     
Sbjct: 341 HHSDNPADDDGGNHQKDKNGNKGRVVGQGRRQ---NHQGGNGIGHGTASSSSHPNYHPV- 400

Query: 407 TVKQQPPGPRMPDGTRGFSMGRGKPV 429
            V ++PPGPRMPDGTRGF+MGRGK +
Sbjct: 401 EVSKRPPGPRMPDGTRGFTMGRGKAI 410

[Close]

BLAST of Cp4.1LG04g00260 vs. TAIR 10
Match: AT5G46250.2 (RNA-binding protein )

HSP 1 Score: 141.4 bits (355), Expect = 1.8e-33
Identity = 96/280 (34.29%), Postives = 146/280 (52.14%), Query Frame = 0


Query: 107 EEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLA 166
           +E++QK++ QVEYYFSD NL T   L+  + ++  G+VPIS +A+F K+K L   H+ + 
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160

Query: 167 NILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGS 226
           + L+ SS L+VS D KKV+R  PL E  + + +   V+ ENLP+DH ++N+ +IF   GS
Sbjct: 161 SALKESSFLVVSADEKKVKRLSPLPE--IRDPKIFTVLVENLPEDHSNENIREIFGKAGS 220

Query: 227 VKNIRTCQPQISDSGTSSTSKSAKADGMHYSNKLHAFVEYESVVLAEKAVAELNDEGNWR 286
           +K++  C P    +    + K  K +      +LHAFVEYE+V  AEKA A LN+E +WR
Sbjct: 221 IKSVSICDP----NAVEESEKGGKKENF-IRTRLHAFVEYETVEAAEKAAATLNNEQDWR 280

Query: 287 NALRLRLMLTCTSKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQADVHPHEQR 346
           N LR++L+     K A  R                                        R
Sbjct: 281 NGLRVKLLEQAAGKFAQRR--------------------------------------PAR 333

Query: 347 EEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHGNH 387
            E   EKD  G  RV ++  G+   +++ H NH  +H ++
Sbjct: 341 REVDKEKDTTG--RVHDQTGGEKNKKTREHQNHRLHHSDN 333

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g00260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80567	7.8e-103	51.50	La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2	[more]
Q9LHL3	5.0e-57	43.35	La-related protein 6C OS=Arabidopsis thaliana OX=3702 GN=LARP6C PE=3 SV=1	[more]
Q94A38	2.0e-45	38.65	La-related protein 6A OS=Arabidopsis thaliana OX=3702 GN=LARP6A PE=2 SV=1	[more]
Q7ZWE3	4.4e-13	34.34	La-related protein 7 OS=Danio rerio OX=7955 GN=larp7 PE=2 SV=1	[more]
Q28G87	2.8e-12	26.92	La-related protein 7 OS=Xenopus tropicalis OX=8364 GN=larp7 PE=2 SV=1	[more]

BLAST of Cp4.1LG04g00260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023530713.1	1.13e-285	83.75	la-related protein 6B-like [Cucurbita pepo subsp. pepo]	[more]
XP_022928061.1	6.27e-282	83.46	la-related protein 6B-like [Cucurbita moschata]	[more]
KAG6588510.1	3.04e-279	82.50	La-related protein 6B, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022969525.1	7.72e-276	82.36	la-related protein 6B-like [Cucurbita maxima]	[more]
KAG7022340.1	5.23e-271	89.06	La-related protein 6B, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Cp4.1LG04g00260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EJ80	3.04e-282	83.46	la-related protein 6B-like OS=Cucurbita moschata OX=3662 GN=LOC111434957 PE=4 SV...	[more]
A0A6J1I059	3.74e-276	82.36	la-related protein 6B-like OS=Cucurbita maxima OX=3661 GN=LOC111468508 PE=4 SV=1	[more]
A0A6J1GLH8	3.83e-230	73.90	la-related protein 6B-like OS=Cucurbita moschata OX=3662 GN=LOC111455073 PE=4 SV...	[more]
A0A1S3BGU3	1.82e-229	74.19	la-related protein 6B isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489697 PE=4 SV...	[more]
A0A6J1I3E0	9.61e-229	74.00	la-related protein 6B-like OS=Cucurbita maxima OX=3661 GN=LOC111470630 PE=4 SV=1	[more]

BLAST of Cp4.1LG04g00260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43970.1	5.5e-104	51.50	RNA-binding protein	[more]
AT2G43970.2	5.2e-94	49.25	RNA-binding protein	[more]
AT3G19090.1	3.5e-58	43.35	RNA-binding protein	[more]
AT5G46250.1	1.4e-46	38.65	RNA-binding protein	[more]
AT5G46250.2	1.8e-33	34.29	RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002344	Lupus La protein	PRINTS	PR00302	LUPUSLA	coord: 116..133 score: 50.51 coord: 142..157 score: 32.95 coord: 195..211 score: 21.93 coord: 173..186 score: 44.16
IPR006630	La-type HTH domain	SMART	SM00715	la	coord: 107..187 e-value: 4.3E-37 score: 139.2
IPR006630	La-type HTH domain	PFAM	PF05383	La	coord: 113..171 e-value: 2.5E-18 score: 65.9
IPR006630	La-type HTH domain	PROSITE	PS50961	HTH_LA	coord: 103..194 score: 25.819736
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 101..190 e-value: 1.6E-27 score: 97.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 191..302 e-value: 3.8E-9 score: 38.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 339..433
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 362..379
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 339..361
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 306..325
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 299..325
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 380..404
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..42
None	No IPR available	PANTHER	PTHR22792:SF112	LA-RELATED PROTEIN 6B-LIKE	coord: 20..408
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 20..408
None	No IPR available	CDD	cd08033	LARP_6	coord: 111..186 e-value: 3.14523E-37 score: 128.555
IPR034878	Plant La-related protein, RNA recognition motif	CDD	cd12288	RRM_La_like_plant	coord: 201..295 e-value: 2.2896E-42 score: 142.656
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 105..197
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 165..291

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g00260.1	Cp4.1LG04g00260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding