Cp4.1LG03g16460 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG03g16460
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description50S ribosomal protein L5, chloroplastic
LocationCp4.1LG03: 13221589 .. 13224270 (-)
RNA-Seq ExpressionCp4.1LG03g16460
SyntenyCp4.1LG03g16460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGATATGATCCGTTTTTACAAAGATCAATCGCCTTACTGAGTTATGGTTCATTCGTAATAACATGGAAATACGAGGATATACTCGGGACTGGGAATTGCACAAACACCCTTTGGCTAAAGTTATCTTCTAATTCACCTCTTCCCCTGCGCGAAAAGTAGAAACATCGCTGAAGCTCCGATGGCTTCTTCTTCGCTGTTGAGCTCCGCTATGTCGTCATTTCATGGCCATTCCCCATTAGTCTCGGCCCGTTTTCCTGCACCGACTGCCCTCGGATACCCTAGCAATGTAGCTCCACTGTCGGTGAGGGTAAAAGCCTCGACTGGAGGTGCTATAGTGCTTGTCGAGAAGGCAGAGGCTGAGAAGGTCAACCGGCTCAAATCAAACTACCTTGAGAAAATTGTGCCGATGCTTATGGATGAGTTCTCATACTCCAATATCCACCAGGTACTGACAGCGTAAATTGGGAGGTGTTGATTGAATTCTTGATTTATTAGCTCAATTGATCGCTGGAGTTCGTCGGATTGTAATTTGGTAGAAGTTGGGTTGGATTCTTACTACATTGTTTTTGTTGTTCCGGAATGTTAATTTGTGTGTTCTGAAACTGTTTTTGTAATTGTTAGAAGAATTGGAAATTGTTAGAAGAATTGGAAATTGTTAGAAGAATTTGAAATTGTTAGTGGGTTTTCTTCTTATGTCAATTCAATTTCATTTTATGGAGAGAAAGGAGCATCAATATAATGAGGCACGAGTATTTCTATGTTTGTATGCAAGTATTTACACGCACATGGAAGATAAGGGTCCTCGATGGATTAAGAACCTTGAAATCTGGGACCAAATTCATTTTTGTACTCAGCATTCTCCTAGATTAAGTTGATTTTTCATTTCTGGCTGTGATTTTAGTTACCGGGTCTCAAAGATTTTTGATTTTGGTGTTTTTCCCCTCCATCAAAAAGAATTGGCAACCCATATGATGACTAAACACAAATTCTTCTTACGAAATATCTGTACCTTTTCTGTTAGGTTCCCAAAATTGAGAAGATAGTAGTGAACTGTGGTATTGGAGATGCTCAGCAGAATGCGAAGGGTTTGGATGCTGCAATGAATGAGTTAGCATCCATTACAGGACAACGACCTGTGAAAACACGTGCAAAGAAGGCCATTGCAACCTTCAAGATCAGGGAGGGTCAACCACTTGGGATTGCTGCTACCCTACGGGGAAATGTGAGTTTCACTTGTTCCTTTTAGAATTATGAGCTAGTCATTGTTTCTATGGATCTTTTGGCTTCTGTGTATAGTCCTCAGTGCTACTCGGTTTGATATATCTTGATACGGAAAATGCATGTTGATATTTGGAACTGGCTCTGATTTTCAATGCTTGTAGTCATAAACATTCCTTATGTTCCTTGTGATCAGTATGTGCTTTTTACGTGGTTGGTCTAGTGCATTTCTCTTGTATGATGTTGTTGGGAATTCGATTCTTCGAGTTAATAGTCTAAATGAAGTGCAAAGGAATGACTTTGGAGGGGAGGGAGTTGCTCCTTCATGTCACGGGCTCAATGCACATCACCATAATACTCAGTTTAATGAAAAAGAGTTTTGTGCCTGTTATCGACGAGTCGAGAGGACAAAATAGACGTGGGATTCTCGTGTATTGTTATAATGTAAGGTAACTAGCATCATCAAATGGAAGAAGTCATGCGTGTGGATGCAGCCACTAGTTGTATTATTTTGATGATCTATAAATGCGTTAATGTGTTTTGTGCAGTGGATTTCTCTGTATAATGATGTTAGGAATTCGATTCTTTGATATAACTGTCCAAAACAAGTGCAAAGGAATGGCCTCGGAGTAGGAAGTTCTTCCTTCACAGTCTTGATACATGTTTAAGTGAACAAGATTTTTGTGTCAATTATTATGGAGTATGTGGAAGGACAAAAGAAATCTAAGGGGCATTAAAGATCTGGTGTTGTAATAATGGAATAAGTTTTGGGTGTTGCTGCTGGCATTTGTCTTAAATGTTAAAAACGACTTGATTCTTATGCTGCTTGCTTGCTGACTGCACTTATAGGTGATGTACTCCTTCCTGGATCGTCTCATCAACTTGGGGCTCCCTCGAACAAGGGACTTTCAGGGACTGAACTCAAGCAGCTTTGATGGACATGGAAATTACTCCATTGGGATCCGCGAACAGAGCGTGTTCCCAGAAATAAAGTTCGACACGCTTAGCAGACCGAGGGGAATGGACGTTTGTATCACAACGACAGCTGAAACTGATCAAGAAGCTCAACGACTCTTGGCACTCATGGGAATGCCTTTCAGAGAAAGTGCTGGTTCTGCATCTGGGCTGCGTAAAAAGAAGCTGAAGTCCCACCATTTTGATTCCAAATCCAAGGGAAGATCTCGGAGGTAATGAATACATTTTAGGAAGAAGGCTTTTATTATATTTCCTCAATTCATTTGCTGTTCTTTACTTGAAGAAACTGTACTCTACCAAATTTAGCTGGGTTGTATGCCAATTTTATGAAGTTATAGAGGTTTGTTTATGAGATTAGTTCCTTTAACCCCGAAATTCTATCTGAAATTTGAGTCCTGAACAGTATTTTAGCATCGGATGCTGCATTTTGAACAGTATTCCCATAGCCATTGCTCAAACCATAGGCCCTTGCTCTGAATAGCAAGAGAG

mRNA sequence

TGATATGATCCGTTTTTACAAAGATCAATCGCCTTACTGAGTTATGGTTCATTCGTAATAACATGGAAATACGAGGATATACTCGGGACTGGGAATTGCACAAACACCCTTTGGCTAAAGTTATCTTCTAATTCACCTCTTCCCCTGCGCGAAAAGTAGAAACATCGCTGAAGCTCCGATGGCTTCTTCTTCGCTGTTGAGCTCCGCTATGTCGTCATTTCATGGCCATTCCCCATTAGTCTCGGCCCGTTTTCCTGCACCGACTGCCCTCGGATACCCTAGCAATGTAGCTCCACTGTCGGTGAGGGTAAAAGCCTCGACTGGAGGTGCTATAGTGCTTGTCGAGAAGGCAGAGGCTGAGAAGGTCAACCGGCTCAAATCAAACTACCTTGAGAAAATTGTGCCGATGCTTATGGATGAGTTCTCATACTCCAATATCCACCAGGTTCCCAAAATTGAGAAGATAGTAGTGAACTGTGGTATTGGAGATGCTCAGCAGAATGCGAAGGGTTTGGATGCTGCAATGAATGAGTTAGCATCCATTACAGGACAACGACCTGTGAAAACACGTGCAAAGAAGGCCATTGCAACCTTCAAGATCAGGGAGGGTCAACCACTTGGGATTGCTGCTACCCTACGGGGAAATGTGATGTACTCCTTCCTGGATCGTCTCATCAACTTGGGGCTCCCTCGAACAAGGGACTTTCAGGGACTGAACTCAAGCAGCTTTGATGGACATGGAAATTACTCCATTGGGATCCGCGAACAGAGCGTGTTCCCAGAAATAAAGTTCGACACGCTTAGCAGACCGAGGGGAATGGACGTTTGTATCACAACGACAGCTGAAACTGATCAAGAAGCTCAACGACTCTTGGCACTCATGGGAATGCCTTTCAGAGAAAGTGCTGGTTCTGCATCTGGGCTGCGTAAAAAGAAGCTGAAGTCCCACCATTTTGATTCCAAATCCAAGGGAAGATCTCGGAGGTAATGAATACATTTTAGGAAGAAGGCTTTTATTATATTTCCTCAATTCATTTGCTGTTCTTTACTTGAAGAAACTGTACTCTACCAAATTTAGCTGGGTTGTATGCCAATTTTATGAAGTTATAGAGGTTTGTTTATGAGATTAGTTCCTTTAACCCCGAAATTCTATCTGAAATTTGAGTCCTGAACAGTATTTTAGCATCGGATGCTGCATTTTGAACAGTATTCCCATAGCCATTGCTCAAACCATAGGCCCTTGCTCTGAATAGCAAGAGAG

Coding sequence (CDS)

ATGGCTTCTTCTTCGCTGTTGAGCTCCGCTATGTCGTCATTTCATGGCCATTCCCCATTAGTCTCGGCCCGTTTTCCTGCACCGACTGCCCTCGGATACCCTAGCAATGTAGCTCCACTGTCGGTGAGGGTAAAAGCCTCGACTGGAGGTGCTATAGTGCTTGTCGAGAAGGCAGAGGCTGAGAAGGTCAACCGGCTCAAATCAAACTACCTTGAGAAAATTGTGCCGATGCTTATGGATGAGTTCTCATACTCCAATATCCACCAGGTTCCCAAAATTGAGAAGATAGTAGTGAACTGTGGTATTGGAGATGCTCAGCAGAATGCGAAGGGTTTGGATGCTGCAATGAATGAGTTAGCATCCATTACAGGACAACGACCTGTGAAAACACGTGCAAAGAAGGCCATTGCAACCTTCAAGATCAGGGAGGGTCAACCACTTGGGATTGCTGCTACCCTACGGGGAAATGTGATGTACTCCTTCCTGGATCGTCTCATCAACTTGGGGCTCCCTCGAACAAGGGACTTTCAGGGACTGAACTCAAGCAGCTTTGATGGACATGGAAATTACTCCATTGGGATCCGCGAACAGAGCGTGTTCCCAGAAATAAAGTTCGACACGCTTAGCAGACCGAGGGGAATGGACGTTTGTATCACAACGACAGCTGAAACTGATCAAGAAGCTCAACGACTCTTGGCACTCATGGGAATGCCTTTCAGAGAAAGTGCTGGTTCTGCATCTGGGCTGCGTAAAAAGAAGCTGAAGTCCCACCATTTTGATTCCAAATCCAAGGGAAGATCTCGGAGGTAA

Protein sequence

MASSSLLSSAMSSFHGHSPLVSARFPAPTALGYPSNVAPLSVRVKASTGGAIVLVEKAEAEKVNRLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLDAAMNELASITGQRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMGMPFRESAGSASGLRKKKLKSHHFDSKSKGRSRR
Homology
[Close]
BLAST of Cp4.1LG03g16460 vs. ExPASy Swiss-Prot
Match: O04603 (50S ribosomal protein L5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL5 PE=2 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 3.3e-91
Identity = 181/272 (66.54%), Postives = 216/272 (79.41%), Query Frame = 0 

Query: 1   MASSSLLSSAMSSFHGH-SPLV---SARFPAPTALGYPSNVAPLSVRVKASTGGAIVLVE 60
           MAS SLL S+ SSFHG  SPL    SAR  +P          PL   VK S  G  VLVE
Sbjct: 1   MASPSLLQSSASSFHGRFSPLAAPSSARMLSP----------PLRNVVKVSASGT-VLVE 60

Query: 61  KAEAEKVNRLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLDAAM 120
           K+EAEK  RLK+ YLE+I+P L +EF Y NIHQVPK++KIVVNCGIGDA QN KGL+AAM
Sbjct: 61  KSEAEKTQRLKTAYLERIIPALKEEFKYVNIHQVPKVQKIVVNCGIGDAAQNDKGLEAAM 120

Query: 121 NELASITGQRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDF 180
            ++A ITGQ+P+KTRA+ +IATFKIRE QPLGIA TLRG+VMYSFLDRLINL LPRTRDF
Sbjct: 121 KDIALITGQKPIKTRARASIATFKIREDQPLGIAVTLRGDVMYSFLDRLINLALPRTRDF 180

Query: 181 QGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMG 240
           QG++ SSFDG+GNYSIG+++Q VFPEI+FD + + RGMDVCI+TTA++DQE Q+LLALMG
Sbjct: 181 QGVSPSSFDGNGNYSIGVKDQGVFPEIRFDAVGKTRGMDVCISTTAKSDQEGQKLLALMG 240

Query: 241 MPFRESAGSASG--LRKKKLKSHHFDSKSKGR 267
           MPFRE  G ++G  +RKKKLKSHHFD+K KG+
Sbjct: 241 MPFREGGGGSTGAIVRKKKLKSHHFDAKGKGK 261

[Close]
BLAST of Cp4.1LG03g16460 vs. ExPASy Swiss-Prot
Match: P82192 (50S ribosomal protein L5, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL5 PE=1 SV=3)

HSP 1 Score: 334.0 bits (855), Expect = 1.6e-90
Identity = 182/266 (68.42%), Postives = 214/266 (80.45%), Query Frame = 0 

Query: 1   MASSSLLSSAMSSFHGHSPLVSARFPAPTALGYPSNVAPLSVRVKASTGGAIVLVEKAEA 60
           MAS+SLL S  SSF G       RF   T+      V   S  VKA+ G A V V+KAEA
Sbjct: 1   MASTSLLQSTSSSFAG------VRFHCRTSAA--PRVGLSSFTVKAAAGTA-VFVDKAEA 60

Query: 61  EKVNRLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLDAAMNELA 120
           E +NRLK+NY+EK+VP+L +EFSYSNI +VPK+ KIVVNCGIGDA QNAKGLDAA+NELA
Sbjct: 61  ETINRLKTNYIEKMVPLLKEEFSYSNILEVPKVVKIVVNCGIGDASQNAKGLDAAINELA 120

Query: 121 SITGQRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLN 180
            ITGQRPVKT+AK +IA FK+REG  LGIA TLRGN+MYSFLDRLINL LPRTRDFQG+N
Sbjct: 121 LITGQRPVKTKAKTSIAGFKVREGMTLGIAVTLRGNLMYSFLDRLINLALPRTRDFQGVN 180

Query: 181 SSSFDGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMGMPFR 240
            +SFDGHGNYS+G REQSVFPEIK + + + RGMDVCITTTA+TD+EA +LL+LMGMPFR
Sbjct: 181 PNSFDGHGNYSVGFREQSVFPEIKPEIVGKARGMDVCITTTAKTDKEAYKLLSLMGMPFR 240

Query: 241 ESAGSASGLRKKKLKSHHFDSKSKGR 267
           E +G ++ +RKKKLKSHHFD+K KGR
Sbjct: 241 EGSGPSTLVRKKKLKSHHFDAK-KGR 256

[Close]
BLAST of Cp4.1LG03g16460 vs. ExPASy Swiss-Prot
Match: Q9ZST0 (50S ribosomal protein L5, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPL5 PE=2 SV=2)

HSP 1 Score: 282.3 bits (721), Expect = 5.6e-75
Identity = 143/248 (57.66%), Postives = 185/248 (74.60%), Query Frame = 0 

Query: 19  PLVSARFPAPTALGYPSNVAPLSVRVKASTGGAIVLVEKAEAEKVNRLKSNYLEKIVPML 78
           P  + R  A  A   P   AP       ++   IVLV+  EA+KV+RLK+ Y +K+VP++
Sbjct: 36  PRRALRVAASAAADAPPKPAP-----PPTSPSGIVLVDPTEAQKVHRLKAVYDQKVVPLI 95

Query: 79  MDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLDAAMNELASITGQRPVKTRAKKAIAT 138
            +EF Y+N+HQVPK+EKIVVNCG+G    N+KGL++AM +LA ITGQ PVKT+AKK++A+
Sbjct: 96  TEEFGYTNVHQVPKVEKIVVNCGLGAEAGNSKGLESAMKDLAMITGQWPVKTKAKKSVAS 155

Query: 139 FKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQS 198
           FKIREG  +GIA TLRG VM++FLDRLINLGLPRT DF G+N +SFDGHGN++IG+R+Q 
Sbjct: 156 FKIREGNTIGIAVTLRGRVMFNFLDRLINLGLPRTMDFLGVNPNSFDGHGNFTIGLRDQG 215

Query: 199 VFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMGMPFRESAGSASGLRKKKLKSHH 258
           VFPEI ++   +  GMDVCI TTA+TD EA RLL L+GMPF E   S+  +RKK+LK HH
Sbjct: 216 VFPEIPYEVGGKKNGMDVCIVTTAKTDNEALRLLTLLGMPFAEHIKSSVVIRKKRLKRHH 275

Query: 259 FDSKSKGR 267
           F SK +GR
Sbjct: 276 FMSKGRGR 278

[Close]
BLAST of Cp4.1LG03g16460 vs. ExPASy Swiss-Prot
Match: B8HMR6 (50S ribosomal protein L5 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rplE PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 2.7e-61
Identity = 112/177 (63.28%), Postives = 141/177 (79.66%), Query Frame = 0 

Query: 65  RLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLDAAMNELASITG 124
           RLK+ YLE  VP LM++F Y NIHQVPK+ KI +N G+G+A QNAK L+A++NE+A I G
Sbjct: 4   RLKTYYLENAVPKLMEQFKYKNIHQVPKLVKITINRGLGEAAQNAKSLEASLNEIALIAG 63

Query: 125 QRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLNSSSF 184
           Q+PV TRAKKAIA FKIR+G P+GI  TLR + MY+F DRLINL LPR RDF+G+N  SF
Sbjct: 64  QKPVVTRAKKAIAGFKIRQGMPVGIMVTLRSDRMYAFFDRLINLALPRIRDFRGVNPKSF 123

Query: 185 DGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMGMPFRE 242
           DG GNYS+G+REQ +FPEI +D++ + RGMDV I TTA TD+E + LL +MGMPFR+
Sbjct: 124 DGRGNYSLGLREQLIFPEISYDSIDQMRGMDVSIITTATTDEEGRALLKVMGMPFRD 180

[Close]
BLAST of Cp4.1LG03g16460 vs. ExPASy Swiss-Prot
Match: Q8DMM0 (50S ribosomal protein L5 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rplE PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 7.8e-61
Identity = 111/178 (62.36%), Postives = 140/178 (78.65%), Query Frame = 0 

Query: 65  RLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLDAAMNELASITG 124
           RLK +Y + +VP LM +F Y NIHQVPKI K+ VN G+G+A QNAK L+A + E+A+ITG
Sbjct: 4   RLKDHYNKTVVPQLMQQFQYKNIHQVPKIVKVTVNRGLGEAAQNAKALEATLAEIATITG 63

Query: 125 QRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLNSSSF 184
           Q+PV TRAKKAIA FKIR+G P+G+A TLR   MY+FLDRLINL LPR RDF+G+N  SF
Sbjct: 64  QKPVVTRAKKAIAGFKIRKGMPVGVAVTLRSERMYAFLDRLINLALPRIRDFRGVNPKSF 123

Query: 185 DGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMGMPFRES 243
           DG GNY++G+REQ +FPE+ +D + + RGMDV I TTA TD+E + LL  MGMPFRE+
Sbjct: 124 DGRGNYTLGLREQLIFPEVNYDDIDQIRGMDVSIITTANTDEEGRALLKAMGMPFREN 181

[Close]
BLAST of Cp4.1LG03g16460 vs. NCBI nr
Match: XP_023526708.1 (50S ribosomal protein L5, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 515 bits (1326), Expect = 9.62e-184
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 0 

Query: 1   MASSSLLSSAMSSFHGHSPLVSARFPAPTALGYPSNVAPLSVRVKASTGGAIVLVEKAEA 60
           MASSSLLSSAMSSFHGHSPLVSARFPAPTALGYPSNVAPLSVRVKASTGGAIVLVEKAEA
Sbjct: 1   MASSSLLSSAMSSFHGHSPLVSARFPAPTALGYPSNVAPLSVRVKASTGGAIVLVEKAEA 60

Query: 61  EKVNRLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLDAAMNELA 120
           EKVNRLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLDAAMNELA
Sbjct: 61  EKVNRLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLDAAMNELA 120

Query: 121 SITGQRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLN 180
           SITGQRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLN
Sbjct: 121 SITGQRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLN 180

Query: 181 SSSFDGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMGMPFR 240
           SSSFDGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMGMPFR
Sbjct: 181 SSSFDGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMGMPFR 240

Query: 241 ESAGSASGLRKKKLKSHHFDSKSKGRSRR 269
           ESAGSASGLRKKKLKSHHFDSKSKGRSRR
Sbjct: 241 ESAGSASGLRKKKLKSHHFDSKSKGRSRR 269

[Close]
BLAST of Cp4.1LG03g16460 vs. NCBI nr
Match: KAG7019022.1 (50S ribosomal protein L5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 511 bits (1317), Expect = 2.26e-182
Identity = 266/269 (98.88%), Postives = 269/269 (100.00%), Query Frame = 0 

Query: 1   MASSSLLSSAMSSFHGHSPLVSARFPAPTALGYPSNVAPLSVRVKASTGGAIVLVEKAEA 60
           MASSS+LSSAMSSFHGHSPLVSARFPAPTALGYPSNVAPLSVRVKASTGGAIVLVEKAEA
Sbjct: 1   MASSSMLSSAMSSFHGHSPLVSARFPAPTALGYPSNVAPLSVRVKASTGGAIVLVEKAEA 60

Query: 61  EKVNRLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLDAAMNELA 120
           EKVNRLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGL+AAMNELA
Sbjct: 61  EKVNRLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLEAAMNELA 120

Query: 121 SITGQRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLN 180
           SITGQRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLN
Sbjct: 121 SITGQRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLN 180

Query: 181 SSSFDGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMGMPFR 240
           SSSFDGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMGMPFR
Sbjct: 181 SSSFDGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMGMPFR 240

Query: 241 ESAGSASGLRKKKLKSHHFDSKSKGRSRR 269
           ESAG+ASGLRKKKLKSHHFDSKSKGRSRR
Sbjct: 241 ESAGAASGLRKKKLKSHHFDSKSKGRSRR 269

[Close]
BLAST of Cp4.1LG03g16460 vs. NCBI nr
Match: KAG6582630.1 (50S ribosomal protein L5, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 510 bits (1314), Expect = 1.51e-181
Identity = 265/268 (98.88%), Postives = 268/268 (100.00%), Query Frame = 0 

Query: 1   MASSSLLSSAMSSFHGHSPLVSARFPAPTALGYPSNVAPLSVRVKASTGGAIVLVEKAEA 60
           MASSS+LSSAMSSFHGHSPLVSARFPAPTALGYPSNVAPLSVRVKASTGGAIVLVEKAEA
Sbjct: 1   MASSSMLSSAMSSFHGHSPLVSARFPAPTALGYPSNVAPLSVRVKASTGGAIVLVEKAEA 60

Query: 61  EKVNRLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLDAAMNELA 120
           EKVNRLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGL+AAMNELA
Sbjct: 61  EKVNRLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLEAAMNELA 120

Query: 121 SITGQRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLN 180
           SITGQRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLN
Sbjct: 121 SITGQRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLN 180

Query: 181 SSSFDGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMGMPFR 240
           SSSFDGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMGMPFR
Sbjct: 181 SSSFDGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMGMPFR 240

Query: 241 ESAGSASGLRKKKLKSHHFDSKSKGRSR 268
           ESAG+ASGLRKKKLKSHHFDSKSKGRSR
Sbjct: 241 ESAGAASGLRKKKLKSHHFDSKSKGRSR 268

[Close]
BLAST of Cp4.1LG03g16460 vs. NCBI nr
Match: XP_022924528.1 (50S ribosomal protein L5, chloroplastic [Cucurbita moschata])

HSP 1 Score: 507 bits (1305), Expect = 1.53e-180
Identity = 264/269 (98.14%), Postives = 268/269 (99.63%), Query Frame = 0 

Query: 1   MASSSLLSSAMSSFHGHSPLVSARFPAPTALGYPSNVAPLSVRVKASTGGAIVLVEKAEA 60
           MASSS+LSSAMSSFHGHSPLVSARFPAPTALGYPS VAPLSVRVKASTGGAIVLVEKAEA
Sbjct: 1   MASSSMLSSAMSSFHGHSPLVSARFPAPTALGYPSIVAPLSVRVKASTGGAIVLVEKAEA 60

Query: 61  EKVNRLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLDAAMNELA 120
           EKVNRLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGL+AAMNELA
Sbjct: 61  EKVNRLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLEAAMNELA 120

Query: 121 SITGQRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLN 180
           SITGQRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLN
Sbjct: 121 SITGQRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLN 180

Query: 181 SSSFDGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMGMPFR 240
           S+SFDGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMGMPFR
Sbjct: 181 SNSFDGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMGMPFR 240

Query: 241 ESAGSASGLRKKKLKSHHFDSKSKGRSRR 269
           ESAG+ASGLRKKKLKSHHFDSKSKGRSRR
Sbjct: 241 ESAGAASGLRKKKLKSHHFDSKSKGRSRR 269

[Close]
BLAST of Cp4.1LG03g16460 vs. NCBI nr
Match: XP_022980148.1 (50S ribosomal protein L5, chloroplastic [Cucurbita maxima])

HSP 1 Score: 501 bits (1290), Expect = 2.95e-178
Identity = 262/269 (97.40%), Postives = 266/269 (98.88%), Query Frame = 0 

Query: 1   MASSSLLSSAMSSFHGHSPLVSARFPAPTALGYPSNVAPLSVRVKASTGGAIVLVEKAEA 60
           MASSSLLSSAMSSFHGHS LVSA FPAPTALGYPSNVA L+VRVKASTGGAIVLVEKAEA
Sbjct: 1   MASSSLLSSAMSSFHGHSQLVSAHFPAPTALGYPSNVASLAVRVKASTGGAIVLVEKAEA 60

Query: 61  EKVNRLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLDAAMNELA 120
           EKVNRLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGL+AAM+ELA
Sbjct: 61  EKVNRLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLEAAMSELA 120

Query: 121 SITGQRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLN 180
           SITGQRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLN
Sbjct: 121 SITGQRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLN 180

Query: 181 SSSFDGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMGMPFR 240
           S+SFDGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMGMPFR
Sbjct: 181 SNSFDGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMGMPFR 240

Query: 241 ESAGSASGLRKKKLKSHHFDSKSKGRSRR 269
           ESAGSASGLRKKKLKSHHFDSKSKGRSRR
Sbjct: 241 ESAGSASGLRKKKLKSHHFDSKSKGRSRR 269

[Close]
BLAST of Cp4.1LG03g16460 vs. ExPASy TrEMBL
Match: A0A6J1ECQ6 (50S ribosomal protein L5, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431985 PE=3 SV=1)

HSP 1 Score: 507 bits (1305), Expect = 7.40e-181
Identity = 264/269 (98.14%), Postives = 268/269 (99.63%), Query Frame = 0 

Query: 1   MASSSLLSSAMSSFHGHSPLVSARFPAPTALGYPSNVAPLSVRVKASTGGAIVLVEKAEA 60
           MASSS+LSSAMSSFHGHSPLVSARFPAPTALGYPS VAPLSVRVKASTGGAIVLVEKAEA
Sbjct: 1   MASSSMLSSAMSSFHGHSPLVSARFPAPTALGYPSIVAPLSVRVKASTGGAIVLVEKAEA 60

Query: 61  EKVNRLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLDAAMNELA 120
           EKVNRLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGL+AAMNELA
Sbjct: 61  EKVNRLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLEAAMNELA 120

Query: 121 SITGQRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLN 180
           SITGQRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLN
Sbjct: 121 SITGQRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLN 180

Query: 181 SSSFDGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMGMPFR 240
           S+SFDGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMGMPFR
Sbjct: 181 SNSFDGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMGMPFR 240

Query: 241 ESAGSASGLRKKKLKSHHFDSKSKGRSRR 269
           ESAG+ASGLRKKKLKSHHFDSKSKGRSRR
Sbjct: 241 ESAGAASGLRKKKLKSHHFDSKSKGRSRR 269

[Close]
BLAST of Cp4.1LG03g16460 vs. ExPASy TrEMBL
Match: A0A6J1IYF4 (50S ribosomal protein L5, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111479624 PE=3 SV=1)

HSP 1 Score: 501 bits (1290), Expect = 1.43e-178
Identity = 262/269 (97.40%), Postives = 266/269 (98.88%), Query Frame = 0 

Query: 1   MASSSLLSSAMSSFHGHSPLVSARFPAPTALGYPSNVAPLSVRVKASTGGAIVLVEKAEA 60
           MASSSLLSSAMSSFHGHS LVSA FPAPTALGYPSNVA L+VRVKASTGGAIVLVEKAEA
Sbjct: 1   MASSSLLSSAMSSFHGHSQLVSAHFPAPTALGYPSNVASLAVRVKASTGGAIVLVEKAEA 60

Query: 61  EKVNRLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLDAAMNELA 120
           EKVNRLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGL+AAM+ELA
Sbjct: 61  EKVNRLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLEAAMSELA 120

Query: 121 SITGQRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLN 180
           SITGQRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLN
Sbjct: 121 SITGQRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLN 180

Query: 181 SSSFDGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMGMPFR 240
           S+SFDGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMGMPFR
Sbjct: 181 SNSFDGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMGMPFR 240

Query: 241 ESAGSASGLRKKKLKSHHFDSKSKGRSRR 269
           ESAGSASGLRKKKLKSHHFDSKSKGRSRR
Sbjct: 241 ESAGSASGLRKKKLKSHHFDSKSKGRSRR 269

[Close]
BLAST of Cp4.1LG03g16460 vs. ExPASy TrEMBL
Match: A0A5A7U637 (50S ribosomal protein L5, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001700 PE=3 SV=1)

HSP 1 Score: 470 bits (1210), Expect = 2.39e-166
Identity = 246/271 (90.77%), Postives = 256/271 (94.46%), Query Frame = 0 

Query: 1   MASSSLLSSAMSSFHGHSPLVSARFPAPTALGYPSNVAPLSVRVKA--STGGAIVLVEKA 60
           MASSSLLSS+ SSFHGHSP  S RF AP   G PSNVA L+VRVKA  S GGAIVLVEKA
Sbjct: 1   MASSSLLSSSTSSFHGHSPFFSVRFAAPVGFGNPSNVAQLAVRVKALASAGGAIVLVEKA 60

Query: 61  EAEKVNRLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLDAAMNE 120
           EAEKVNRLKSNY+EKIVP+LMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLDAAMNE
Sbjct: 61  EAEKVNRLKSNYIEKIVPLLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLDAAMNE 120

Query: 121 LASITGQRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQG 180
           LASITGQRPVKTRAKK+IATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQG
Sbjct: 121 LASITGQRPVKTRAKKSIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQG 180

Query: 181 LNSSSFDGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMGMP 240
           LNSSSFDGHGNYSIGIREQSVFPEIKFDTL +PRGMDVCITTTAETDQEAQRLLALMGMP
Sbjct: 181 LNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVCITTTAETDQEAQRLLALMGMP 240

Query: 241 FRESAGSASGLRKKKLKSHHFDSKSKGRSRR 269
           FRESAG+A+ +RKKKLKSHHFDSKSKGR+RR
Sbjct: 241 FRESAGAAAVMRKKKLKSHHFDSKSKGRARR 271

[Close]
BLAST of Cp4.1LG03g16460 vs. ExPASy TrEMBL
Match: A0A1S3AVB4 (50S ribosomal protein L5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483250 PE=3 SV=1)

HSP 1 Score: 470 bits (1210), Expect = 2.39e-166
Identity = 246/271 (90.77%), Postives = 256/271 (94.46%), Query Frame = 0 

Query: 1   MASSSLLSSAMSSFHGHSPLVSARFPAPTALGYPSNVAPLSVRVKA--STGGAIVLVEKA 60
           MASSSLLSS+ SSFHGHSP  S RF AP   G PSNVA L+VRVKA  S GGAIVLVEKA
Sbjct: 1   MASSSLLSSSTSSFHGHSPFFSVRFAAPVGFGNPSNVAQLAVRVKALASAGGAIVLVEKA 60

Query: 61  EAEKVNRLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLDAAMNE 120
           EAEKVNRLKSNY+EKIVP+LMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLDAAMNE
Sbjct: 61  EAEKVNRLKSNYIEKIVPLLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLDAAMNE 120

Query: 121 LASITGQRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQG 180
           LASITGQRPVKTRAKK+IATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQG
Sbjct: 121 LASITGQRPVKTRAKKSIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQG 180

Query: 181 LNSSSFDGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMGMP 240
           LNSSSFDGHGNYSIGIREQSVFPEIKFDTL +PRGMDVCITTTAETDQEAQRLLALMGMP
Sbjct: 181 LNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVCITTTAETDQEAQRLLALMGMP 240

Query: 241 FRESAGSASGLRKKKLKSHHFDSKSKGRSRR 269
           FRESAG+A+ +RKKKLKSHHFDSKSKGR+RR
Sbjct: 241 FRESAGAAAVMRKKKLKSHHFDSKSKGRARR 271

[Close]
BLAST of Cp4.1LG03g16460 vs. ExPASy TrEMBL
Match: A0A5D3D3L2 (50S ribosomal protein L5, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004890 PE=3 SV=1)

HSP 1 Score: 470 bits (1209), Expect = 3.40e-166
Identity = 246/271 (90.77%), Postives = 256/271 (94.46%), Query Frame = 0 

Query: 1   MASSSLLSSAMSSFHGHSPLVSARFPAPTALGYPSNVAPLSVRVKA--STGGAIVLVEKA 60
           MASSSLLSS+ SSFHGHSP  S RF AP   G PSNVA L+VRVKA  S GGAIVLVEKA
Sbjct: 1   MASSSLLSSSTSSFHGHSPFFSVRFSAPVGCGNPSNVAQLAVRVKALASAGGAIVLVEKA 60

Query: 61  EAEKVNRLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLDAAMNE 120
           EAEKVNRLKSNY+EKIVP+LMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLDAAMNE
Sbjct: 61  EAEKVNRLKSNYIEKIVPLLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLDAAMNE 120

Query: 121 LASITGQRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQG 180
           LASITGQRPVKTRAKK+IATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQG
Sbjct: 121 LASITGQRPVKTRAKKSIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQG 180

Query: 181 LNSSSFDGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMGMP 240
           LNSSSFDGHGNYSIGIREQSVFPEIKFDTL +PRGMDVCITTTAETDQEAQRLLALMGMP
Sbjct: 181 LNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVCITTTAETDQEAQRLLALMGMP 240

Query: 241 FRESAGSASGLRKKKLKSHHFDSKSKGRSRR 269
           FRESAG+A+ +RKKKLKSHHFDSKSKGR+RR
Sbjct: 241 FRESAGAAAVMRKKKLKSHHFDSKSKGRARR 271

[Close]
BLAST of Cp4.1LG03g16460 vs. TAIR 10
Match: AT4G01310.1 (Ribosomal L5P family protein )

HSP 1 Score: 336.3 bits (861), Expect = 2.3e-92
Identity = 181/272 (66.54%), Postives = 216/272 (79.41%), Query Frame = 0 

Query: 1   MASSSLLSSAMSSFHGH-SPLV---SARFPAPTALGYPSNVAPLSVRVKASTGGAIVLVE 60
           MAS SLL S+ SSFHG  SPL    SAR  +P          PL   VK S  G  VLVE
Sbjct: 1   MASPSLLQSSASSFHGRFSPLAAPSSARMLSP----------PLRNVVKVSASGT-VLVE 60

Query: 61  KAEAEKVNRLKSNYLEKIVPMLMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLDAAM 120
           K+EAEK  RLK+ YLE+I+P L +EF Y NIHQVPK++KIVVNCGIGDA QN KGL+AAM
Sbjct: 61  KSEAEKTQRLKTAYLERIIPALKEEFKYVNIHQVPKVQKIVVNCGIGDAAQNDKGLEAAM 120

Query: 121 NELASITGQRPVKTRAKKAIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDF 180
            ++A ITGQ+P+KTRA+ +IATFKIRE QPLGIA TLRG+VMYSFLDRLINL LPRTRDF
Sbjct: 121 KDIALITGQKPIKTRARASIATFKIREDQPLGIAVTLRGDVMYSFLDRLINLALPRTRDF 180

Query: 181 QGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLSRPRGMDVCITTTAETDQEAQRLLALMG 240
           QG++ SSFDG+GNYSIG+++Q VFPEI+FD + + RGMDVCI+TTA++DQE Q+LLALMG
Sbjct: 181 QGVSPSSFDGNGNYSIGVKDQGVFPEIRFDAVGKTRGMDVCISTTAKSDQEGQKLLALMG 240

Query: 241 MPFRESAGSASG--LRKKKLKSHHFDSKSKGR 267
           MPFRE  G ++G  +RKKKLKSHHFD+K KG+
Sbjct: 241 MPFREGGGGSTGAIVRKKKLKSHHFDAKGKGK 261

[Close]
BLAST of Cp4.1LG03g16460 vs. TAIR 10
Match: AT2G42740.1 (ribosomal protein large subunit 16A )

HSP 1 Score: 47.8 bits (112), Expect = 1.6e-05
Identity = 37/138 (26.81%), Postives = 69/138 (50.00%), Query Frame = 0 

Query: 78  LMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLDAAMNELASITGQRPVKTRAKKAIA 137
           +  E   SN  +  K++K+V+N  +G++      L  A   L  ++GQ PV ++A+  + 
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDR---LTRASKVLEQLSGQTPVFSKARYTVR 60

Query: 138 TFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQ 197
           +F IR  + +    T+RG        +L+  GL + ++++ L   +F   G +  GI+E 
Sbjct: 61  SFGIRRNEKIACYVTVRGEKAM----QLLESGL-KVKEYE-LLRRNFSDTGCFGFGIQEH 120

Query: 198 SVFPEIKFDTLSRPRGMD 216
            +   IK+D  +   GMD
Sbjct: 121 -IDLGIKYDPSTGIYGMD 128

[Close]
BLAST of Cp4.1LG03g16460 vs. TAIR 10
Match: AT3G58700.1 (Ribosomal L5P family protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.6e-05
Identity = 37/138 (26.81%), Postives = 69/138 (50.00%), Query Frame = 0 

Query: 78  LMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLDAAMNELASITGQRPVKTRAKKAIA 137
           +  E   SN  +  K++K+V+N  +G++      L  A   L  ++GQ PV ++A+  + 
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDR---LTRASKVLEQLSGQTPVFSKARYTVR 60

Query: 138 TFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQ 197
           +F IR  + +    T+RG        +L+  GL + ++++ L   +F   G +  GI+E 
Sbjct: 61  SFGIRRNEKIACYVTVRGEKAM----QLLESGL-KVKEYE-LLRRNFSDTGCFGFGIQEH 120

Query: 198 SVFPEIKFDTLSRPRGMD 216
            +   IK+D  +   GMD
Sbjct: 121 -IDLGIKYDPSTGIYGMD 128

[Close]
BLAST of Cp4.1LG03g16460 vs. TAIR 10
Match: AT4G18730.1 (ribosomal protein L16B )

HSP 1 Score: 47.8 bits (112), Expect = 1.6e-05
Identity = 37/138 (26.81%), Postives = 69/138 (50.00%), Query Frame = 0 

Query: 78  LMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLDAAMNELASITGQRPVKTRAKKAIA 137
           +  E   SN  +  K++K+V+N  +G++      L  A   L  ++GQ PV ++A+  + 
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDR---LTRASKVLEQLSGQTPVFSKARYTVR 60

Query: 138 TFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQ 197
           +F IR  + +    T+RG        +L+  GL + ++++ L   +F   G +  GI+E 
Sbjct: 61  SFGIRRNEKIACYVTVRGEKAM----QLLESGL-KVKEYE-LLRRNFSDTGCFGFGIQEH 120

Query: 198 SVFPEIKFDTLSRPRGMD 216
            +   IK+D  +   GMD
Sbjct: 121 -IDLGIKYDPSTGIYGMD 128

[Close]
BLAST of Cp4.1LG03g16460 vs. TAIR 10
Match: AT5G45775.2 (Ribosomal L5P family protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.6e-05
Identity = 37/138 (26.81%), Postives = 69/138 (50.00%), Query Frame = 0 

Query: 78  LMDEFSYSNIHQVPKIEKIVVNCGIGDAQQNAKGLDAAMNELASITGQRPVKTRAKKAIA 137
           +  E   SN  +  K++K+V+N  +G++      L  A   L  ++GQ PV ++A+  + 
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDR---LTRASKVLEQLSGQTPVFSKARYTVR 60

Query: 138 TFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQ 197
           +F IR  + +    T+RG        +L+  GL + ++++ L   +F   G +  GI+E 
Sbjct: 61  SFGIRRNEKIACYVTVRGEKAM----QLLESGL-KVKEYE-LLRRNFSDTGCFGFGIQEH 120

Query: 198 SVFPEIKFDTLSRPRGMD 216
            +   IK+D  +   GMD
Sbjct: 121 -IDLGIKYDPSTGIYGMD 128

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g16460 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O046033.3e-9166.5450S ribosomal protein L5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL5 ... [more]
P821921.6e-9068.4250S ribosomal protein L5, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL5 PE=... [more]
Q9ZST05.6e-7557.6650S ribosomal protein L5, chloroplastic OS=Oryza sativa subsp. japonica OX=39947... [more]
B8HMR62.7e-6163.2850S ribosomal protein L5 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395... [more]
Q8DMM07.8e-6162.3650S ribosomal protein L5 OS=Thermosynechococcus elongatus (strain BP-1) OX=19722... [more]
BLAST of Cp4.1LG03g16460 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023526708.19.62e-184100.0050S ribosomal protein L5, chloroplastic [Cucurbita pepo subsp. pepo][more]
KAG7019022.12.26e-18298.8850S ribosomal protein L5, chloroplastic [Cucurbita argyrosperma subsp. argyrospe... [more]
KAG6582630.11.51e-18198.8850S ribosomal protein L5, chloroplastic, partial [Cucurbita argyrosperma subsp. ... [more]
XP_022924528.11.53e-18098.1450S ribosomal protein L5, chloroplastic [Cucurbita moschata][more]
XP_022980148.12.95e-17897.4050S ribosomal protein L5, chloroplastic [Cucurbita maxima][more]
BLAST of Cp4.1LG03g16460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1ECQ67.40e-18198.1450S ribosomal protein L5, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A6J1IYF41.43e-17897.4050S ribosomal protein L5, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111479... [more]
A0A5A7U6372.39e-16690.7750S ribosomal protein L5, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A1S3AVB42.39e-16690.7750S ribosomal protein L5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483250 ... [more]
A0A5D3D3L23.40e-16690.7750S ribosomal protein L5, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 G... [more]
BLAST of Cp4.1LG03g16460 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G01310.12.3e-9266.54Ribosomal L5P family protein [more]
AT2G42740.11.6e-0526.81ribosomal protein large subunit 16A [more]
AT3G58700.11.6e-0526.81Ribosomal L5P family protein [more]
AT4G18730.11.6e-0526.81ribosomal protein L16B [more]
AT5G45775.21.6e-0526.81Ribosomal L5P family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031310Ribosomal protein L5, N-terminalPFAMPF00281Ribosomal_L5coord: 86..142
e-value: 1.2E-25
score: 89.6
IPR022803Ribosomal protein L5 domain superfamilyGENE3D3.30.1440.10coord: 57..242
e-value: 2.5E-74
score: 250.8
IPR022803Ribosomal protein L5 domain superfamilySUPERFAMILY55282RL5-likecoord: 65..240
IPR031309Ribosomal protein L5, C-terminalPFAMPF00673Ribosomal_L5_Ccoord: 146..239
e-value: 5.5E-33
score: 113.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 243..269
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 250..269
NoneNo IPR availablePANTHERPTHR11994:SF454S RIBOSOMAL PROTEIN L7, MITOCHONDRIALcoord: 59..241
IPR002132Ribosomal protein L5PANTHERPTHR1199460S RIBOSOMAL PROTEIN L11-RELATEDcoord: 59..241
IPR020929Ribosomal protein L5, conserved sitePROSITEPS00358RIBOSOMAL_L5coord: 119..135
IPR020930Ribosomal protein L5, bacterial-typeHAMAPMF_01333_BRibosomal_L5_Bcoord: 63..241
score: 40.944931

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g16460.1Cp4.1LG03g16460.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome