Cp4.1LG03g16430 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g16430
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	pathogenesis-related genes transcriptional activator PTI6-like isoform X1
Location	Cp4.1LG03: 13335187 .. 13336068 (-)
RNA-Seq Expression	Cp4.1LG03g16430
Synteny	Cp4.1LG03g16430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGCTATGGAATTCCAGTACCCATCAATGGGGCGAGTTTGTTCCGCCGGAATTAAGTTCAGAGAAGTTCGGACCATCACCGACAAACCGGCGACGGAGACCAAGCTCGTCCGAATTACCTACACCGACGGCGATGCGACCGATTCGTCCAGTGGTGAAGACGAAGAGCCAAGCCTCATCCGCCACGTCAAACGCCACGTGACTGAGATCAGGCTTCTCACTACCGATTGTTCCAAAAAGCCACTGCCGCCGAAATCGAGAGTTAAGCCGCCGTCGAATTCGGAGAGCCATAGAAAGTTTAGAGGAGTTCGGCGGCGCCCGTGGGGCAAATGGGCAGCGGAGATCAGAGACCCTTTACGGCGAACAAGAGTTTGGCTTGGAACCTACGACACGGCGGAGGAAGCCGCTGTCGTTTACGACCGTGCCGCCGTCCGCCTTAGAGGTCCCAACGCTCTTACCAATTTCGTCGCCGAAGCTCCCACTTCCAAAACAACTGTTGTCACATACCTCCCTCCACCATCACCACCGCCACCGCCGGAAAATCATAGTACGGCAGCGGTGGGAGTTTCCTACAGCAAAGAATCCCGGAATCACTGCTCTCCGACTTCCGTCTTGAGATTAGAAGAACAAAATTGGAGACCCATTGAGCATCTAAGCGAAGAATCAGGATTAGAAGAGGAATTCAATTGGTTATATGATCGGAACTCCAACAGTTTCTTGTTCAATCTAAGAAGCCCACAACCGTTATTTTCCGACCAAATGGAACTGGAAATCCCGAAATGGGAAGATTTCGGGGACATTTCGGTGGATTTCGATTCATGTAAATGGGACGTAGAGAATTATTTTCAAGATCCAAGCTTTAGTATCGCATTGACTGACTGA

mRNA sequence

AGGGCTATGGAATTCCAGTACCCATCAATGGGGCGAGTTTGTTCCGCCGGAATTAAGTTCAGAGAAGTTCGGACCATCACCGACAAACCGGCGACGGAGACCAAGCTCGTCCGAATTACCTACACCGACGGCGATGCGACCGATTCGTCCAGTGGTGAAGACGAAGAGCCAAGCCTCATCCGCCACGTCAAACGCCACGTGACTGAGATCAGGCTTCTCACTACCGATTCGGTGGGAGTTTCCTACAGCAAAGAATCCCGGAATCACTGCTCTCCGACTTCCGTCTTGAGATTAGAAGAACAAAATTGGAGACCCATTGAGCATCTAAGCGAAGAATCAGGATTAGAAGAGGAATTCAATTGGTTATATGATCGGAACTCCAACAGTTTCTTGTTCAATCTAAGAAGCCCACAACCGTTATTTTCCGACCAAATGGAACTGGAAATCCCGAAATGGGAAGATTTCGGGGACATTTCGGTGGATTTCGATTCATGTAAATGGGACGTAGAGAATTATTTTCAAGATCCAAGCTTTAGTATCGCATTGACTGACTGA

Coding sequence (CDS)

AGGGCTATGGAATTCCAGTACCCATCAATGGGGCGAGTTTGTTCCGCCGGAATTAAGTTCAGAGAAGTTCGGACCATCACCGACAAACCGGCGACGGAGACCAAGCTCGTCCGAATTACCTACACCGACGGCGATGCGACCGATTCGTCCAGTGGTGAAGACGAAGAGCCAAGCCTCATCCGCCACGTCAAACGCCACGTGACTGAGATCAGGCTTCTCACTACCGATTCGGTGGGAGTTTCCTACAGCAAAGAATCCCGGAATCACTGCTCTCCGACTTCCGTCTTGAGATTAGAAGAACAAAATTGGAGACCCATTGAGCATCTAAGCGAAGAATCAGGATTAGAAGAGGAATTCAATTGGTTATATGATCGGAACTCCAACAGTTTCTTGTTCAATCTAAGAAGCCCACAACCGTTATTTTCCGACCAAATGGAACTGGAAATCCCGAAATGGGAAGATTTCGGGGACATTTCGGTGGATTTCGATTCATGTAAATGGGACGTAGAGAATTATTTTCAAGATCCAAGCTTTAGTATCGCATTGACTGACTGA

Protein sequence

RAMEFQYPSMGRVCSAGIKFREVRTITDKPATETKLVRITYTDGDATDSSSGEDEEPSLIRHVKRHVTEIRLLTTDSVGVSYSKESRNHCSPTSVLRLEEQNWRPIEHLSEESGLEEEFNWLYDRNSNSFLFNLRSPQPLFSDQMELEIPKWEDFGDISVDFDSCKWDVENYFQDPSFSIALTD

Homology

[Close]

BLAST of Cp4.1LG03g16430 vs. ExPASy Swiss-Prot
Match: Q9M374 (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana OX=3702 GN=CRF6 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.6e-04
Identity = 30/77 (38.96%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 18 IKFREVRTITDKPATET----KLVRITYTDGDATDSSSGEDE--EPSLIRHVKRHVTEIR 77
          +KF E RT+T+  AT +    +LVRIT TD  ATDSSS +D+    +++  VKR+V EIR
Sbjct: 8  VKFTENRTVTNVAATPSNGSPRLVRITVTDPFATDSSSDDDDNNNVTVVPRVKRYVKEIR 67

Query: 78 LLTTDSVGVSYSKESRN 89
              +S   + +++ ++
Sbjct: 68 FCQGESSSSTAARKGKH 84

[Close]

BLAST of Cp4.1LG03g16430 vs. ExPASy Swiss-Prot
Match: O04682 (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum OX=4081 GN=PTI6 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.5e-04
Identity = 30/61 (49.18%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 35 KLVRITYTDGDATDSSSGEDEEPSLIRHVKRHVTEIRLL-TTDSVGVSYSKESRNHCSPT 94
          ++VRI  TD DATDSS  +DE  + +R VKRHVTEI L+ +T S+G       R   SP 
Sbjct: 36 RVVRIILTDADATDSS--DDEGRNTVRRVKRHVTEINLMPSTKSIG----DRKRRSVSPD 90

[Close]

BLAST of Cp4.1LG03g16430 vs. NCBI nr
Match: XP_023526804.1 (pathogenesis-related genes transcriptional activator PTI6-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 325 bits (833), Expect = 8.33e-110
Identity = 181/291 (62.20%), Postives = 182/291 (62.54%), Query Frame = 0


Query: 3   MEFQYPSMGRVCSAGIKFREVRTITDKPATETKLVRITYTDGDATDSSSGEDEEPSLIRH 62
           MEFQYPSMGRVCSAGIKFREVRTITDKPATETKLVRITYTDGDATDSSSGEDEEPSLIRH
Sbjct: 1   MEFQYPSMGRVCSAGIKFREVRTITDKPATETKLVRITYTDGDATDSSSGEDEEPSLIRH 60

Query: 63  VKRHVTEIRLLTTD---------------------------------------------- 122
           VKRHVTEIRLLTTD                                              
Sbjct: 61  VKRHVTEIRLLTTDCSKKPLPPKSRVKPPSNSESHRKFRGVRRRPWGKWAAEIRDPLRRT 120

Query: 123 ------------------------------------------------------------ 182
                                                                       
Sbjct: 121 RVWLGTYDTAEEAAVVYDRAAVRLRGPNALTNFVAEAPTSKTTVVTYLPPPSPPPPPENH 180

Query: 183 ---SVGVSYSKESRNHCSPTSVLRLEEQNWRPIEHLSEESGLEEEFNWLYDRNSNSFLFN 184
              +VGVSYSKESRNHCSPTSVLRLEEQNWRPIEHLSEESGLEEEFNWLYDRNSNSFLFN
Sbjct: 181 STAAVGVSYSKESRNHCSPTSVLRLEEQNWRPIEHLSEESGLEEEFNWLYDRNSNSFLFN 240

[Close]

BLAST of Cp4.1LG03g16430 vs. NCBI nr
Match: KAG7019043.1 (Ethylene-responsive transcription factor CRF4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 320 bits (820), Expect = 7.91e-108
Identity = 178/291 (61.17%), Postives = 181/291 (62.20%), Query Frame = 0


Query: 3   MEFQYPSMGRVCSAGIKFREVRTITDKPATETKLVRITYTDGDATDSSSGEDEEPSLIRH 62
           MEFQYPSMGRVCSAGIKFREVRTITDKPATETKLVRI+YTDGDATDSSSGEDEEP LIRH
Sbjct: 1   MEFQYPSMGRVCSAGIKFREVRTITDKPATETKLVRISYTDGDATDSSSGEDEEPILIRH 60

Query: 63  VKRHVTEIRLLTTD---------------------------------------------- 122
           VKRHVTEIRLLTTD                                              
Sbjct: 61  VKRHVTEIRLLTTDCSKKPLPPKSRVKPPSNSESHRKFRGVRRRPWGKWAAEIRDPSRRT 120

Query: 123 ------------------------------------------------------------ 182
                                                                       
Sbjct: 121 RVWLGTYDTAEEAAVVYDRAAVRLRGPNAFTNFVAEAPNSKTTVVTYLPPPPPPPPPVNH 180

Query: 183 ---SVGVSYSKESRNHCSPTSVLRLEEQNWRPIEHLSEESGLEEEFNWLYDRNSNSFLFN 184
              +VGVSYSKESRNHCSPTSVLRLEEQNWRPIEHLSEESGLE+EFNWLYDRNSNSFLFN
Sbjct: 181 STAAVGVSYSKESRNHCSPTSVLRLEEQNWRPIEHLSEESGLEDEFNWLYDRNSNSFLFN 240

[Close]

BLAST of Cp4.1LG03g16430 vs. NCBI nr
Match: XP_022979383.1 (pathogenesis-related genes transcriptional activator PTI6-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 318 bits (814), Expect = 6.47e-107
Identity = 177/291 (60.82%), Postives = 180/291 (61.86%), Query Frame = 0


Query: 3   MEFQYPSMGRVCSAGIKFREVRTITDKPATETKLVRITYTDGDATDSSSGEDEEPSLIRH 62
           MEFQYPSMGRVCSAGIKFREVRTITDKPATETKLVRI+YTDGDATDSSSGEDEEP LIRH
Sbjct: 1   MEFQYPSMGRVCSAGIKFREVRTITDKPATETKLVRISYTDGDATDSSSGEDEEPILIRH 60

Query: 63  VKRHVTEIRLLTTD---------------------------------------------- 122
           VKRHVTEIRLLTTD                                              
Sbjct: 61  VKRHVTEIRLLTTDCSKKPPPPKSRVKPPSNSESHRKFRGVRRRPWGKWAAEIRDPLRRT 120

Query: 123 ------------------------------------------------------------ 182
                                                                       
Sbjct: 121 RVWLGTYDTAEEAAVVYDRAAVRLRGPNAFTNFVAEAPNSKTTVVTYLPPPPPPPPPENH 180

Query: 183 ---SVGVSYSKESRNHCSPTSVLRLEEQNWRPIEHLSEESGLEEEFNWLYDRNSNSFLFN 184
              +VGVSYSKE RNHCSPTSVLRLEEQNWRPIEHLSEESGLE+EFNWLYDRNSNSFLFN
Sbjct: 181 STAAVGVSYSKEFRNHCSPTSVLRLEEQNWRPIEHLSEESGLEDEFNWLYDRNSNSFLFN 240

[Close]

BLAST of Cp4.1LG03g16430 vs. NCBI nr
Match: XP_022924563.1 (pathogenesis-related genes transcriptional activator PTI6-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 313 bits (802), Expect = 4.32e-105
Identity = 175/291 (60.14%), Postives = 179/291 (61.51%), Query Frame = 0


Query: 3   MEFQYPSMGRVCSAGIKFREVRTITDKPATETKLVRITYTDGDATDSSSGEDEEPSLIRH 62
           MEFQYPSMGRVCSAGIKFREVRTITDKPA ETKLVRI+YTDGDATDSSSGEDEEP LIRH
Sbjct: 1   MEFQYPSMGRVCSAGIKFREVRTITDKPAPETKLVRISYTDGDATDSSSGEDEEPILIRH 60

Query: 63  VKRHVTEIRLLTTD---------------------------------------------- 122
           VKRHVTEIRLLT+D                                              
Sbjct: 61  VKRHVTEIRLLTSDCSKKPLPPKSRVKPPSNSESHRKFRGVRRRPWGKWAAEIRDPLRRT 120

Query: 123 ------------------------------------------------------------ 182
                                                                       
Sbjct: 121 RVWLGTYETAEEAAVVYDRAAVRLRGPNAFTNFVAEAPNSKTTVVTYLPPPPPPPPPENH 180

Query: 183 ---SVGVSYSKESRNHCSPTSVLRLEEQNWRPIEHLSEESGLEEEFNWLYDRNSNSFLFN 184
              +VGVSYSKESRNHCSPTSVLRLEEQNWRPIEHLSEESGLE+EFNWLYD NSNSFLFN
Sbjct: 181 STAAVGVSYSKESRNHCSPTSVLRLEEQNWRPIEHLSEESGLEDEFNWLYDWNSNSFLFN 240

[Close]

BLAST of Cp4.1LG03g16430 vs. NCBI nr
Match: XP_023526805.1 (pathogenesis-related genes transcriptional activator PTI6-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 310 bits (794), Expect = 5.62e-104
Identity = 174/284 (61.27%), Postives = 175/284 (61.62%), Query Frame = 0


Query: 10  MGRVCSAGIKFREVRTITDKPATETKLVRITYTDGDATDSSSGEDEEPSLIRHVKRHVTE 69
           MGRVCSAGIKFREVRTITDKPATETKLVRITYTDGDATDSSSGEDEEPSLIRHVKRHVTE
Sbjct: 1   MGRVCSAGIKFREVRTITDKPATETKLVRITYTDGDATDSSSGEDEEPSLIRHVKRHVTE 60

Query: 70  IRLLTTD----------------------------------------------------- 129
           IRLLTTD                                                     
Sbjct: 61  IRLLTTDCSKKPLPPKSRVKPPSNSESHRKFRGVRRRPWGKWAAEIRDPLRRTRVWLGTY 120

Query: 130 --------------------------------------------------------SVGV 184
                                                                   +VGV
Sbjct: 121 DTAEEAAVVYDRAAVRLRGPNALTNFVAEAPTSKTTVVTYLPPPSPPPPPENHSTAAVGV 180

[Close]

BLAST of Cp4.1LG03g16430 vs. ExPASy TrEMBL
Match: A0A6J1IW14 (pathogenesis-related genes transcriptional activator PTI6-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111479125 PE=4 SV=1)

HSP 1 Score: 318 bits (814), Expect = 3.13e-107
Identity = 177/291 (60.82%), Postives = 180/291 (61.86%), Query Frame = 0


Query: 3   MEFQYPSMGRVCSAGIKFREVRTITDKPATETKLVRITYTDGDATDSSSGEDEEPSLIRH 62
           MEFQYPSMGRVCSAGIKFREVRTITDKPATETKLVRI+YTDGDATDSSSGEDEEP LIRH
Sbjct: 1   MEFQYPSMGRVCSAGIKFREVRTITDKPATETKLVRISYTDGDATDSSSGEDEEPILIRH 60

Query: 63  VKRHVTEIRLLTTD---------------------------------------------- 122
           VKRHVTEIRLLTTD                                              
Sbjct: 61  VKRHVTEIRLLTTDCSKKPPPPKSRVKPPSNSESHRKFRGVRRRPWGKWAAEIRDPLRRT 120

Query: 123 ------------------------------------------------------------ 182
                                                                       
Sbjct: 121 RVWLGTYDTAEEAAVVYDRAAVRLRGPNAFTNFVAEAPNSKTTVVTYLPPPPPPPPPENH 180

Query: 183 ---SVGVSYSKESRNHCSPTSVLRLEEQNWRPIEHLSEESGLEEEFNWLYDRNSNSFLFN 184
              +VGVSYSKE RNHCSPTSVLRLEEQNWRPIEHLSEESGLE+EFNWLYDRNSNSFLFN
Sbjct: 181 STAAVGVSYSKEFRNHCSPTSVLRLEEQNWRPIEHLSEESGLEDEFNWLYDRNSNSFLFN 240

[Close]

BLAST of Cp4.1LG03g16430 vs. ExPASy TrEMBL
Match: A0A6J1ECU3 (pathogenesis-related genes transcriptional activator PTI6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111432009 PE=4 SV=1)

HSP 1 Score: 313 bits (802), Expect = 2.09e-105
Identity = 175/291 (60.14%), Postives = 179/291 (61.51%), Query Frame = 0


Query: 3   MEFQYPSMGRVCSAGIKFREVRTITDKPATETKLVRITYTDGDATDSSSGEDEEPSLIRH 62
           MEFQYPSMGRVCSAGIKFREVRTITDKPA ETKLVRI+YTDGDATDSSSGEDEEP LIRH
Sbjct: 1   MEFQYPSMGRVCSAGIKFREVRTITDKPAPETKLVRISYTDGDATDSSSGEDEEPILIRH 60

Query: 63  VKRHVTEIRLLTTD---------------------------------------------- 122
           VKRHVTEIRLLT+D                                              
Sbjct: 61  VKRHVTEIRLLTSDCSKKPLPPKSRVKPPSNSESHRKFRGVRRRPWGKWAAEIRDPLRRT 120

Query: 123 ------------------------------------------------------------ 182
                                                                       
Sbjct: 121 RVWLGTYETAEEAAVVYDRAAVRLRGPNAFTNFVAEAPNSKTTVVTYLPPPPPPPPPENH 180

Query: 183 ---SVGVSYSKESRNHCSPTSVLRLEEQNWRPIEHLSEESGLEEEFNWLYDRNSNSFLFN 184
              +VGVSYSKESRNHCSPTSVLRLEEQNWRPIEHLSEESGLE+EFNWLYD NSNSFLFN
Sbjct: 181 STAAVGVSYSKESRNHCSPTSVLRLEEQNWRPIEHLSEESGLEDEFNWLYDWNSNSFLFN 240

[Close]

BLAST of Cp4.1LG03g16430 vs. ExPASy TrEMBL
Match: A0A6J1IWH9 (pathogenesis-related genes transcriptional activator PTI6-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111479125 PE=4 SV=1)

HSP 1 Score: 303 bits (775), Expect = 2.11e-101
Identity = 170/284 (59.86%), Postives = 173/284 (60.92%), Query Frame = 0


Query: 10  MGRVCSAGIKFREVRTITDKPATETKLVRITYTDGDATDSSSGEDEEPSLIRHVKRHVTE 69
           MGRVCSAGIKFREVRTITDKPATETKLVRI+YTDGDATDSSSGEDEEP LIRHVKRHVTE
Sbjct: 1   MGRVCSAGIKFREVRTITDKPATETKLVRISYTDGDATDSSSGEDEEPILIRHVKRHVTE 60

Query: 70  IRLLTTD----------------------------------------------------- 129
           IRLLTTD                                                     
Sbjct: 61  IRLLTTDCSKKPPPPKSRVKPPSNSESHRKFRGVRRRPWGKWAAEIRDPLRRTRVWLGTY 120

Query: 130 --------------------------------------------------------SVGV 184
                                                                   +VGV
Sbjct: 121 DTAEEAAVVYDRAAVRLRGPNAFTNFVAEAPNSKTTVVTYLPPPPPPPPPENHSTAAVGV 180

[Close]

BLAST of Cp4.1LG03g16430 vs. ExPASy TrEMBL
Match: A0A6J1E9I4 (pathogenesis-related genes transcriptional activator PTI6-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111432009 PE=4 SV=1)

HSP 1 Score: 298 bits (763), Expect = 1.41e-99
Identity = 168/284 (59.15%), Postives = 172/284 (60.56%), Query Frame = 0


Query: 10  MGRVCSAGIKFREVRTITDKPATETKLVRITYTDGDATDSSSGEDEEPSLIRHVKRHVTE 69
           MGRVCSAGIKFREVRTITDKPA ETKLVRI+YTDGDATDSSSGEDEEP LIRHVKRHVTE
Sbjct: 1   MGRVCSAGIKFREVRTITDKPAPETKLVRISYTDGDATDSSSGEDEEPILIRHVKRHVTE 60

Query: 70  IRLLTTD----------------------------------------------------- 129
           IRLLT+D                                                     
Sbjct: 61  IRLLTSDCSKKPLPPKSRVKPPSNSESHRKFRGVRRRPWGKWAAEIRDPLRRTRVWLGTY 120

Query: 130 --------------------------------------------------------SVGV 184
                                                                   +VGV
Sbjct: 121 ETAEEAAVVYDRAAVRLRGPNAFTNFVAEAPNSKTTVVTYLPPPPPPPPPENHSTAAVGV 180

[Close]

BLAST of Cp4.1LG03g16430 vs. ExPASy TrEMBL
Match: A0A1S4DSW2 (pathogenesis-related genes transcriptional activator PTI6-like OS=Cucumis melo OX=3656 GN=LOC103483221 PE=4 SV=1)

HSP 1 Score: 258 bits (660), Expect = 6.01e-84
Identity = 149/283 (52.65%), Postives = 162/283 (57.24%), Query Frame = 0


Query: 3   MEFQYPSMGRVCSAGIKFREVRTITDKPATETKLVRITYTDGDATDSSSGEDEEPSLIRH 62
           M+  YP MGRV S GIKFRE RT+T KPA ETKLVRI+YTD DATDSSSGEDEEP L+RH
Sbjct: 1   MKSHYPLMGRVFSGGIKFRETRTVTHKPAAETKLVRISYTDADATDSSSGEDEEPILVRH 60

Query: 63  VKRHVTEIRLLTTD---------------------------------------------- 122
           VKRHVTEIRLLTTD                                              
Sbjct: 61  VKRHVTEIRLLTTDCSKKAPPKSRANPPRNSESHRKFRGVRRRPWGKWAAEIRDPLRRTR 120

Query: 123 ---------------------------------------------------------SVG 181
                                                                    +  
Sbjct: 121 VWLGTYDTAEEAAVVYDEAAVRLRGPSALTNFVAETPHSETTLVTYLTPPPPENQSTAAV 180

[Close]

BLAST of Cp4.1LG03g16430 vs. TAIR 10
Match: AT3G61630.1 (cytokinin response factor 6 )

HSP 1 Score: 47.8 bits (112), Expect = 1.1e-05
Identity = 30/77 (38.96%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 18 IKFREVRTITDKPATET----KLVRITYTDGDATDSSSGEDE--EPSLIRHVKRHVTEIR 77
          +KF E RT+T+  AT +    +LVRIT TD  ATDSSS +D+    +++  VKR+V EIR
Sbjct: 8  VKFTENRTVTNVAATPSNGSPRLVRITVTDPFATDSSSDDDDNNNVTVVPRVKRYVKEIR 67

Query: 78 LLTTDSVGVSYSKESRN 89
              +S   + +++ ++
Sbjct: 68 FCQGESSSSTAARKGKH 84

[Close]

BLAST of Cp4.1LG03g16430 vs. TAIR 10
Match: AT5G53290.1 (cytokinin response factor 3 )

HSP 1 Score: 43.5 bits (101), Expect = 2.1e-04
Identity = 39/109 (35.78%), Postives = 49/109 (44.95%), Query Frame = 0


Query: 35  KLVRITYTDGDATDSSSGEDEEPSLI--RHVKRHVTEIRLLTTDS---VGVSYSKESRNH 94
           K V I YTD DATDSSS EDEE  L   R VKR V EI +  + +    GVS     R  
Sbjct: 37  KKVSICYTDPDATDSSSDEDEEDFLFPRRRVKRFVNEITVEPSCNNVVTGVSMKDRKRLS 96

Query: 95  CSPTSVLRLEEQNWRPIEHLSEESGLEEEFNWLYDRNSNSFLFNLRSPQ 139
            S            RP   +S  SG  ++F  +  R    +   +R P+
Sbjct: 97  SSSDETQSPASSRQRPNNKVS-VSGQIKKFRGVRQRPWGKWAAEIRDPE 144

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g16430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M374	1.6e-04	38.96	Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana OX=3702 GN...	[more]
O04682	3.5e-04	49.18	Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicu...	[more]

BLAST of Cp4.1LG03g16430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023526804.1	8.33e-110	62.20	pathogenesis-related genes transcriptional activator PTI6-like isoform X1 [Cucur...	[more]
KAG7019043.1	7.91e-108	61.17	Ethylene-responsive transcription factor CRF4, partial [Cucurbita argyrosperma s...	[more]
XP_022979383.1	6.47e-107	60.82	pathogenesis-related genes transcriptional activator PTI6-like isoform X1 [Cucur...	[more]
XP_022924563.1	4.32e-105	60.14	pathogenesis-related genes transcriptional activator PTI6-like isoform X1 [Cucur...	[more]
XP_023526805.1	5.62e-104	61.27	pathogenesis-related genes transcriptional activator PTI6-like isoform X2 [Cucur...	[more]

BLAST of Cp4.1LG03g16430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IW14	3.13e-107	60.82	pathogenesis-related genes transcriptional activator PTI6-like isoform X1 OS=Cuc...	[more]
A0A6J1ECU3	2.09e-105	60.14	pathogenesis-related genes transcriptional activator PTI6-like isoform X1 OS=Cuc...	[more]
A0A6J1IWH9	2.11e-101	59.86	pathogenesis-related genes transcriptional activator PTI6-like isoform X2 OS=Cuc...	[more]
A0A6J1E9I4	1.41e-99	59.15	pathogenesis-related genes transcriptional activator PTI6-like isoform X2 OS=Cuc...	[more]
A0A1S4DSW2	6.01e-84	52.65	pathogenesis-related genes transcriptional activator PTI6-like OS=Cucumis melo O...	[more]

BLAST of Cp4.1LG03g16430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61630.1	1.1e-05	38.96	cytokinin response factor 6	[more]
AT5G53290.1	2.1e-04	35.78	cytokinin response factor 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31194:SF108	PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI6-LIKE	coord: 83..175 coord: 17..72
None	No IPR available	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 83..175
None	No IPR available	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 17..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g16430.1	Cp4.1LG03g16430.1	mRNA