Cp4.1LG03g16410 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g16410
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Copper ion binding protein
Location	Cp4.1LG03: 13369107 .. 13369853 (+)
RNA-Seq Expression	Cp4.1LG03g16410
Synteny	Cp4.1LG03g16410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCGTTTCGCGAAATTGAAATCTCTGGTGCCATCTGCAGATTCCGGCAGCCACCATTTGCTTCAAAGGTGCTGGGTGAGTGGTACTGCCAAAGGAAAATCAAAAATCAAAGCTGGGCAACAGCTGAAGCGCTCCAAAATAACCATCAAGAAAGGTGGAGCCGCCTCTTCCAAGGGTGGAGGAGGAGGAGGAGGAAGAAAAATCTCTCTCGAACAGGAAAAGCTCTATGACCAATGTCTAAATGCTCCTACGCCTTTGCGGTTCCTGAAGCCCAAAGACAGAGAACGCGAGGCCGAGCGGGAGAAGCTGGGGCTCATCAGCAAAGAGCGCCAGCGCGAGATTGAGATGATGAAGATGGATAAATCGAAATTGGGCGTCTCTGATTCTCCATCGATCATTGGAACTATGGGGTTGGATCTGATAACGCTAGGTGTGGTCGATGCAGATAAGATCCCGAAGTACGAATTGACTGTGGAAGATGGGCGGCGGCTTGCAAAGGAATACAGTCGGGTGTTGATGAGGCGGCACCGTGCAAGGCAGGCAGCTGAATCGACGCTGTTGCGGATGAAGAAAGATGCTATTGAAGCATTGCCAGAGCATTTGAAAGCTGCCGCATTGGTCCCAGATTTGACTCCGTTCCCAGCGAACCGATTCATGGCGACATTGACGCCTCCAATAGAAGGCTATATTGAAAAGATCAACGAAGTAGCGAAGAGGAGTAGCGGGAAAGAGAAGCTTAGATGA

mRNA sequence

ATGATCCGTTTCGCGAAATTGAAATCTCTGGTGCCATCTGCAGATTCCGGCAGCCACCATTTGCTTCAAAGGTGCTGGGTGAGTGGTACTGCCAAAGGAAAATCAAAAATCAAAGCTGGGCAACAGCTGAAGCGCTCCAAAATAACCATCAAGAAAGGTGGAGCCGCCTCTTCCAAGGGTGGAGGAGGAGGAGGAGGAAGAAAAATCTCTCTCGAACAGGAAAAGCTCTATGACCAATGTCTAAATGCTCCTACGCCTTTGCGGTTCCTGAAGCCCAAAGACAGAGAACGCGAGGCCGAGCGGGAGAAGCTGGGGCTCATCAGCAAAGAGCGCCAGCGCGAGATTGAGATGATGAAGATGGATAAATCGAAATTGGGCGTCTCTGATTCTCCATCGATCATTGGAACTATGGGGTTGGATCTGATAACGCTAGGTGTGGTCGATGCAGATAAGATCCCGAAGTACGAATTGACTGTGGAAGATGGGCGGCGGCTTGCAAAGGAATACAGTCGGGTGTTGATGAGGCGGCACCGTGCAAGGCAGGCAGCTGAATCGACGCTGTTGCGGATGAAGAAAGATGCTATTGAAGCATTGCCAGAGCATTTGAAAGCTGCCGCATTGGTCCCAGATTTGACTCCGTTCCCAGCGAACCGATTCATGGCGACATTGACGCCTCCAATAGAAGGCTATATTGAAAAGATCAACGAAGTAGCGAAGAGGAGTAGCGGGAAAGAGAAGCTTAGATGA

Coding sequence (CDS)

ATGATCCGTTTCGCGAAATTGAAATCTCTGGTGCCATCTGCAGATTCCGGCAGCCACCATTTGCTTCAAAGGTGCTGGGTGAGTGGTACTGCCAAAGGAAAATCAAAAATCAAAGCTGGGCAACAGCTGAAGCGCTCCAAAATAACCATCAAGAAAGGTGGAGCCGCCTCTTCCAAGGGTGGAGGAGGAGGAGGAGGAAGAAAAATCTCTCTCGAACAGGAAAAGCTCTATGACCAATGTCTAAATGCTCCTACGCCTTTGCGGTTCCTGAAGCCCAAAGACAGAGAACGCGAGGCCGAGCGGGAGAAGCTGGGGCTCATCAGCAAAGAGCGCCAGCGCGAGATTGAGATGATGAAGATGGATAAATCGAAATTGGGCGTCTCTGATTCTCCATCGATCATTGGAACTATGGGGTTGGATCTGATAACGCTAGGTGTGGTCGATGCAGATAAGATCCCGAAGTACGAATTGACTGTGGAAGATGGGCGGCGGCTTGCAAAGGAATACAGTCGGGTGTTGATGAGGCGGCACCGTGCAAGGCAGGCAGCTGAATCGACGCTGTTGCGGATGAAGAAAGATGCTATTGAAGCATTGCCAGAGCATTTGAAAGCTGCCGCATTGGTCCCAGATTTGACTCCGTTCCCAGCGAACCGATTCATGGCGACATTGACGCCTCCAATAGAAGGCTATATTGAAAAGATCAACGAAGTAGCGAAGAGGAGTAGCGGGAAAGAGAAGCTTAGATGA

Protein sequence

MIRFAKLKSLVPSADSGSHHLLQRCWVSGTAKGKSKIKAGQQLKRSKITIKKGGAASSKGGGGGGGRKISLEQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISKERQREIEMMKMDKSKLGVSDSPSIIGTMGLDLITLGVVDADKIPKYELTVEDGRRLAKEYSRVLMRRHRARQAAESTLLRMKKDAIEALPEHLKAAALVPDLTPFPANRFMATLTPPIEGYIEKINEVAKRSSGKEKLR

Homology

[Close]

BLAST of Cp4.1LG03g16410 vs. NCBI nr
Match: XP_023527048.1 (uncharacterized protein LOC111790399 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 469 bits (1208), Expect = 1.85e-166
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0


Query: 1   MIRFAKLKSLVPSADSGSHHLLQRCWVSGTAKGKSKIKAGQQLKRSKITIKKGGAASSKG 60
           MIRFAKLKSLVPSADSGSHHLLQRCWVSGTAKGKSKIKAGQQLKRSKITIKKGGAASSKG
Sbjct: 1   MIRFAKLKSLVPSADSGSHHLLQRCWVSGTAKGKSKIKAGQQLKRSKITIKKGGAASSKG 60

Query: 61  GGGGGGRKISLEQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISKERQREIEMMKM 120
           GGGGGGRKISLEQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISKERQREIEMMKM
Sbjct: 61  GGGGGGRKISLEQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISKERQREIEMMKM 120

Query: 121 DKSKLGVSDSPSIIGTMGLDLITLGVVDADKIPKYELTVEDGRRLAKEYSRVLMRRHRAR 180
           DKSKLGVSDSPSIIGTMGLDLITLGVVDADKIPKYELTVEDGRRLAKEYSRVLMRRHRAR
Sbjct: 121 DKSKLGVSDSPSIIGTMGLDLITLGVVDADKIPKYELTVEDGRRLAKEYSRVLMRRHRAR 180

Query: 181 QAAESTLLRMKKDAIEALPEHLKAAALVPDLTPFPANRFMATLTPPIEGYIEKINEVAKR 240
           QAAESTLLRMKKDAIEALPEHLKAAALVPDLTPFPANRFMATLTPPIEGYIEKINEVAKR
Sbjct: 181 QAAESTLLRMKKDAIEALPEHLKAAALVPDLTPFPANRFMATLTPPIEGYIEKINEVAKR 240

Query: 241 SSGKEKLR 248
           SSGKEKLR
Sbjct: 241 SSGKEKLR 248

[Close]

BLAST of Cp4.1LG03g16410 vs. NCBI nr
Match: XP_022924790.1 (uncharacterized protein LOC111432182 [Cucurbita moschata] >KAG6582653.1 hypothetical protein SDJN03_22655, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019050.1 hypothetical protein SDJN02_20927, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 464 bits (1194), Expect = 2.53e-164
Identity = 245/248 (98.79%), Postives = 247/248 (99.60%), Query Frame = 0


Query: 1   MIRFAKLKSLVPSADSGSHHLLQRCWVSGTAKGKSKIKAGQQLKRSKITIKKGGAASSKG 60
           MIRFAKLKSLVPSADSGS+HLLQRCWVSGTAKGKSKIKAGQQLKRSKITIKKGGAASSKG
Sbjct: 1   MIRFAKLKSLVPSADSGSYHLLQRCWVSGTAKGKSKIKAGQQLKRSKITIKKGGAASSKG 60

Query: 61  GGGGGGRKISLEQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISKERQREIEMMKM 120
           GGGGGGRKISLEQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISKERQREIEMMKM
Sbjct: 61  GGGGGGRKISLEQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISKERQREIEMMKM 120

Query: 121 DKSKLGVSDSPSIIGTMGLDLITLGVVDADKIPKYELTVEDGRRLAKEYSRVLMRRHRAR 180
           DKSKLGVSDSPSIIGTMGLDLITLGVVDADKIPKYELTVEDGRRLAKEYSRVLMRRHRAR
Sbjct: 121 DKSKLGVSDSPSIIGTMGLDLITLGVVDADKIPKYELTVEDGRRLAKEYSRVLMRRHRAR 180

Query: 181 QAAESTLLRMKKDAIEALPEHLKAAALVPDLTPFPANRFMATLTPPIEGYIEKINEVAKR 240
           QAAESTLL+MKKDAIEALPEHLKAAALVPDLTPFPANRFMATLTPPIEGYIEKINE AKR
Sbjct: 181 QAAESTLLQMKKDAIEALPEHLKAAALVPDLTPFPANRFMATLTPPIEGYIEKINEAAKR 240

Query: 241 SSGKEKLR 248
           SSGKEKLR
Sbjct: 241 SSGKEKLR 248

[Close]

BLAST of Cp4.1LG03g16410 vs. NCBI nr
Match: XP_022980123.1 (uncharacterized protein LOC111479606 [Cucurbita maxima])

HSP 1 Score: 459 bits (1180), Expect = 3.44e-162
Identity = 242/248 (97.58%), Postives = 244/248 (98.39%), Query Frame = 0


Query: 1   MIRFAKLKSLVPSADSGSHHLLQRCWVSGTAKGKSKIKAGQQLKRSKITIKKGGAASSKG 60
           MIRFAKLKSLVPSADSGSHHLLQRCWVSGTAKGKSKIKAGQQLKRSKITIKKGGAASSKG
Sbjct: 1   MIRFAKLKSLVPSADSGSHHLLQRCWVSGTAKGKSKIKAGQQLKRSKITIKKGGAASSKG 60

Query: 61  GGGGGGRKISLEQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISKERQREIEMMKM 120
           GGGGGGRKIS EQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISKERQREIEMMKM
Sbjct: 61  GGGGGGRKISPEQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISKERQREIEMMKM 120

Query: 121 DKSKLGVSDSPSIIGTMGLDLITLGVVDADKIPKYELTVEDGRRLAKEYSRVLMRRHRAR 180
           DKSKLGVSDSPSIIGTMGLDLITLGVVDADKIPKYELTVEDGRRLAKEYSRVLMRRHRAR
Sbjct: 121 DKSKLGVSDSPSIIGTMGLDLITLGVVDADKIPKYELTVEDGRRLAKEYSRVLMRRHRAR 180

Query: 181 QAAESTLLRMKKDAIEALPEHLKAAALVPDLTPFPANRFMATLTPPIEGYIEKINEVAKR 240
           QAAESTLL+MKKDAIEALPEHLKAAALVPDLTPFPANRFMATLTPPIEGYIEK+ E AK 
Sbjct: 181 QAAESTLLQMKKDAIEALPEHLKAAALVPDLTPFPANRFMATLTPPIEGYIEKVKEAAKS 240

Query: 241 SSGKEKLR 248
           SSGKEKLR
Sbjct: 241 SSGKEKLR 248

[Close]

BLAST of Cp4.1LG03g16410 vs. NCBI nr
Match: XP_038906439.1 (uncharacterized protein LOC120092349 [Benincasa hispida])

HSP 1 Score: 422 bits (1086), Expect = 7.01e-148
Identity = 224/248 (90.32%), Postives = 235/248 (94.76%), Query Frame = 0


Query: 1   MIRFAKLKSLVPSADSGSHHLLQRCWVSGTAKGKSKIKAGQQLKRSKITIKKGGAASSKG 60
           MIRF K KSL  SADSG H LLQRCWVSGTAKGKSKIKAGQ LKRSKIT+KKGGA +SKG
Sbjct: 1   MIRFTKFKSLALSADSGGHQLLQRCWVSGTAKGKSKIKAGQPLKRSKITVKKGGA-TSKG 60

Query: 61  GGGGGGRKISLEQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISKERQREIEMMKM 120
           GGGGGGRKI  EQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISKERQREIEMMKM
Sbjct: 61  GGGGGGRKIPPEQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISKERQREIEMMKM 120

Query: 121 DKSKLGVSDSPSIIGTMGLDLITLGVVDADKIPKYELTVEDGRRLAKEYSRVLMRRHRAR 180
           DKSKLGVSD+PSIIGT+GLDLI+LG+VDADKIPKYELTVEDGRRLAKEYSRVLMRRHRAR
Sbjct: 121 DKSKLGVSDTPSIIGTVGLDLISLGLVDADKIPKYELTVEDGRRLAKEYSRVLMRRHRAR 180

Query: 181 QAAESTLLRMKKDAIEALPEHLKAAALVPDLTPFPANRFMATLTPPIEGYIEKINEVAKR 240
           +AAESTLL+MKK+AIEALPEHLKAAALVPDLT FPANRFMATLTPPIEGYIEK+ E A+R
Sbjct: 181 RAAESTLLQMKKEAIEALPEHLKAAALVPDLTLFPANRFMATLTPPIEGYIEKVKEAARR 240

Query: 241 SSGKEKLR 248
           SSGKEKLR
Sbjct: 241 SSGKEKLR 247

[Close]

BLAST of Cp4.1LG03g16410 vs. NCBI nr
Match: XP_022147522.1 (uncharacterized protein LOC111016425 [Momordica charantia])

HSP 1 Score: 415 bits (1067), Expect = 5.12e-145
Identity = 218/248 (87.90%), Postives = 231/248 (93.15%), Query Frame = 0


Query: 1   MIRFAKLKSLVPSADSGSHHLLQRCWVSGTAKGKSKIKAGQQLKRSKITIKKGGAASSKG 60
           MIR  KLKS+   ADSG H L+QRCWVSGTAKGK+KIK GQQLKRSKITIKKGGAA SKG
Sbjct: 1   MIRLTKLKSVAEFADSGRHQLIQRCWVSGTAKGKAKIKGGQQLKRSKITIKKGGAAPSKG 60

Query: 61  GGGGGGRKISLEQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISKERQREIEMMKM 120
           GGG   RK+  EQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISK+RQREIEMMKM
Sbjct: 61  GGG---RKMPPEQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISKDRQREIEMMKM 120

Query: 121 DKSKLGVSDSPSIIGTMGLDLITLGVVDADKIPKYELTVEDGRRLAKEYSRVLMRRHRAR 180
           DKSKLG+SDSPSI+GT+GLDLI+LGVVDADKIPKYELTVEDGRRLAKEYSRVLMRRHRAR
Sbjct: 121 DKSKLGISDSPSILGTVGLDLISLGVVDADKIPKYELTVEDGRRLAKEYSRVLMRRHRAR 180

Query: 181 QAAESTLLRMKKDAIEALPEHLKAAALVPDLTPFPANRFMATLTPPIEGYIEKINEVAKR 240
           QAAESTLL+MKKDAIEALPEHLKAAA+VPDLTPFP NRFMATLTPPIEGYIEK+ E A+R
Sbjct: 181 QAAESTLLQMKKDAIEALPEHLKAAAMVPDLTPFPPNRFMATLTPPIEGYIEKVKEAARR 240

Query: 241 SSGKEKLR 248
           SSGKEKLR
Sbjct: 241 SSGKEKLR 245

[Close]

BLAST of Cp4.1LG03g16410 vs. ExPASy TrEMBL
Match: A0A6J1EG20 (uncharacterized protein LOC111432182 OS=Cucurbita moschata OX=3662 GN=LOC111432182 PE=4 SV=1)

HSP 1 Score: 464 bits (1194), Expect = 1.22e-164
Identity = 245/248 (98.79%), Postives = 247/248 (99.60%), Query Frame = 0


Query: 1   MIRFAKLKSLVPSADSGSHHLLQRCWVSGTAKGKSKIKAGQQLKRSKITIKKGGAASSKG 60
           MIRFAKLKSLVPSADSGS+HLLQRCWVSGTAKGKSKIKAGQQLKRSKITIKKGGAASSKG
Sbjct: 1   MIRFAKLKSLVPSADSGSYHLLQRCWVSGTAKGKSKIKAGQQLKRSKITIKKGGAASSKG 60

Query: 61  GGGGGGRKISLEQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISKERQREIEMMKM 120
           GGGGGGRKISLEQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISKERQREIEMMKM
Sbjct: 61  GGGGGGRKISLEQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISKERQREIEMMKM 120

Query: 121 DKSKLGVSDSPSIIGTMGLDLITLGVVDADKIPKYELTVEDGRRLAKEYSRVLMRRHRAR 180
           DKSKLGVSDSPSIIGTMGLDLITLGVVDADKIPKYELTVEDGRRLAKEYSRVLMRRHRAR
Sbjct: 121 DKSKLGVSDSPSIIGTMGLDLITLGVVDADKIPKYELTVEDGRRLAKEYSRVLMRRHRAR 180

Query: 181 QAAESTLLRMKKDAIEALPEHLKAAALVPDLTPFPANRFMATLTPPIEGYIEKINEVAKR 240
           QAAESTLL+MKKDAIEALPEHLKAAALVPDLTPFPANRFMATLTPPIEGYIEKINE AKR
Sbjct: 181 QAAESTLLQMKKDAIEALPEHLKAAALVPDLTPFPANRFMATLTPPIEGYIEKINEAAKR 240

Query: 241 SSGKEKLR 248
           SSGKEKLR
Sbjct: 241 SSGKEKLR 248

[Close]

BLAST of Cp4.1LG03g16410 vs. ExPASy TrEMBL
Match: A0A6J1IYC8 (uncharacterized protein LOC111479606 OS=Cucurbita maxima OX=3661 GN=LOC111479606 PE=4 SV=1)

HSP 1 Score: 459 bits (1180), Expect = 1.66e-162
Identity = 242/248 (97.58%), Postives = 244/248 (98.39%), Query Frame = 0


Query: 1   MIRFAKLKSLVPSADSGSHHLLQRCWVSGTAKGKSKIKAGQQLKRSKITIKKGGAASSKG 60
           MIRFAKLKSLVPSADSGSHHLLQRCWVSGTAKGKSKIKAGQQLKRSKITIKKGGAASSKG
Sbjct: 1   MIRFAKLKSLVPSADSGSHHLLQRCWVSGTAKGKSKIKAGQQLKRSKITIKKGGAASSKG 60

Query: 61  GGGGGGRKISLEQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISKERQREIEMMKM 120
           GGGGGGRKIS EQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISKERQREIEMMKM
Sbjct: 61  GGGGGGRKISPEQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISKERQREIEMMKM 120

Query: 121 DKSKLGVSDSPSIIGTMGLDLITLGVVDADKIPKYELTVEDGRRLAKEYSRVLMRRHRAR 180
           DKSKLGVSDSPSIIGTMGLDLITLGVVDADKIPKYELTVEDGRRLAKEYSRVLMRRHRAR
Sbjct: 121 DKSKLGVSDSPSIIGTMGLDLITLGVVDADKIPKYELTVEDGRRLAKEYSRVLMRRHRAR 180

Query: 181 QAAESTLLRMKKDAIEALPEHLKAAALVPDLTPFPANRFMATLTPPIEGYIEKINEVAKR 240
           QAAESTLL+MKKDAIEALPEHLKAAALVPDLTPFPANRFMATLTPPIEGYIEK+ E AK 
Sbjct: 181 QAAESTLLQMKKDAIEALPEHLKAAALVPDLTPFPANRFMATLTPPIEGYIEKVKEAAKS 240

Query: 241 SSGKEKLR 248
           SSGKEKLR
Sbjct: 241 SSGKEKLR 248

[Close]

BLAST of Cp4.1LG03g16410 vs. ExPASy TrEMBL
Match: A0A6J1D2K4 (uncharacterized protein LOC111016425 OS=Momordica charantia OX=3673 GN=LOC111016425 PE=4 SV=1)

HSP 1 Score: 415 bits (1067), Expect = 2.48e-145
Identity = 218/248 (87.90%), Postives = 231/248 (93.15%), Query Frame = 0


Query: 1   MIRFAKLKSLVPSADSGSHHLLQRCWVSGTAKGKSKIKAGQQLKRSKITIKKGGAASSKG 60
           MIR  KLKS+   ADSG H L+QRCWVSGTAKGK+KIK GQQLKRSKITIKKGGAA SKG
Sbjct: 1   MIRLTKLKSVAEFADSGRHQLIQRCWVSGTAKGKAKIKGGQQLKRSKITIKKGGAAPSKG 60

Query: 61  GGGGGGRKISLEQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISKERQREIEMMKM 120
           GGG   RK+  EQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISK+RQREIEMMKM
Sbjct: 61  GGG---RKMPPEQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISKDRQREIEMMKM 120

Query: 121 DKSKLGVSDSPSIIGTMGLDLITLGVVDADKIPKYELTVEDGRRLAKEYSRVLMRRHRAR 180
           DKSKLG+SDSPSI+GT+GLDLI+LGVVDADKIPKYELTVEDGRRLAKEYSRVLMRRHRAR
Sbjct: 121 DKSKLGISDSPSILGTVGLDLISLGVVDADKIPKYELTVEDGRRLAKEYSRVLMRRHRAR 180

Query: 181 QAAESTLLRMKKDAIEALPEHLKAAALVPDLTPFPANRFMATLTPPIEGYIEKINEVAKR 240
           QAAESTLL+MKKDAIEALPEHLKAAA+VPDLTPFP NRFMATLTPPIEGYIEK+ E A+R
Sbjct: 181 QAAESTLLQMKKDAIEALPEHLKAAAMVPDLTPFPPNRFMATLTPPIEGYIEKVKEAARR 240

Query: 241 SSGKEKLR 248
           SSGKEKLR
Sbjct: 241 SSGKEKLR 245

[Close]

BLAST of Cp4.1LG03g16410 vs. ExPASy TrEMBL
Match: A0A5D3D1D4 (Copper ion binding isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G005240 PE=4 SV=1)

HSP 1 Score: 405 bits (1042), Expect = 1.71e-141
Identity = 215/248 (86.69%), Postives = 232/248 (93.55%), Query Frame = 0


Query: 1   MIRFAKLKSLVPSADSGSHHLLQRCWVSGTAKGKSKIKAGQQLKRSKITIKKGGAASSKG 60
           MIRF K KSL   ADS +H LLQRCWVSGTAKGKSKIKAGQ LKRSKIT+KKGGAAS KG
Sbjct: 1   MIRFTKFKSLSLYADSSAHQLLQRCWVSGTAKGKSKIKAGQPLKRSKITVKKGGAAS-KG 60

Query: 61  GGGGGGRKISLEQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISKERQREIEMMKM 120
           G  GGG+KIS E+EKLYDQCLNAPTPLRFLK K+REREAEREKLGL+SKERQREIEMMKM
Sbjct: 61  GDSGGGKKISPEEEKLYDQCLNAPTPLRFLKAKEREREAEREKLGLMSKERQREIEMMKM 120

Query: 121 DKSKLGVSDSPSIIGTMGLDLITLGVVDADKIPKYELTVEDGRRLAKEYSRVLMRRHRAR 180
           DKSKLG+SDSPSIIGT GLDLI+LGVVDADKIPKYELTVEDGRRLAKEYSRVLMR+HRAR
Sbjct: 121 DKSKLGISDSPSIIGTPGLDLISLGVVDADKIPKYELTVEDGRRLAKEYSRVLMRQHRAR 180

Query: 181 QAAESTLLRMKKDAIEALPEHLKAAALVPDLTPFPANRFMATLTPPIEGYIEKINEVAKR 240
           +AAESTLL+MKK+AIEALP+HLKAAALVPD+TPFPA+RFMATLTPPIEGY+EKI+E AKR
Sbjct: 181 RAAESTLLKMKKEAIEALPDHLKAAALVPDMTPFPADRFMATLTPPIEGYMEKIDEAAKR 240

Query: 241 SSGKEKLR 248
           SS KEKLR
Sbjct: 241 SSAKEKLR 247

[Close]

BLAST of Cp4.1LG03g16410 vs. ExPASy TrEMBL
Match: E5GCH1 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 405 bits (1042), Expect = 1.71e-141
Identity = 215/248 (86.69%), Postives = 232/248 (93.55%), Query Frame = 0


Query: 1   MIRFAKLKSLVPSADSGSHHLLQRCWVSGTAKGKSKIKAGQQLKRSKITIKKGGAASSKG 60
           MIRF K KSL   ADS +H LLQRCWVSGTAKGKSKIKAGQ LKRSKIT+KKGGAAS KG
Sbjct: 1   MIRFTKFKSLSLYADSSAHQLLQRCWVSGTAKGKSKIKAGQPLKRSKITVKKGGAAS-KG 60

Query: 61  GGGGGGRKISLEQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISKERQREIEMMKM 120
           G  GGG+KIS E+EKLYDQCLNAPTPLRFLK K+REREAEREKLGL+SKERQREIEMMKM
Sbjct: 61  GDSGGGKKISPEEEKLYDQCLNAPTPLRFLKAKEREREAEREKLGLMSKERQREIEMMKM 120

Query: 121 DKSKLGVSDSPSIIGTMGLDLITLGVVDADKIPKYELTVEDGRRLAKEYSRVLMRRHRAR 180
           DKSKLG+SDSPSIIGT GLDLI+LGVVDADKIPKYELTVEDGRRLAKEYSRVLMR+HRAR
Sbjct: 121 DKSKLGISDSPSIIGTPGLDLISLGVVDADKIPKYELTVEDGRRLAKEYSRVLMRQHRAR 180

Query: 181 QAAESTLLRMKKDAIEALPEHLKAAALVPDLTPFPANRFMATLTPPIEGYIEKINEVAKR 240
           +AAESTLL+MKK+AIEALP+HLKAAALVPD+TPFPA+RFMATLTPPIEGY+EKI+E AKR
Sbjct: 181 RAAESTLLKMKKEAIEALPDHLKAAALVPDMTPFPADRFMATLTPPIEGYMEKIDEAAKR 240

Query: 241 SSGKEKLR 248
           SS KEKLR
Sbjct: 241 SSAKEKLR 247

[Close]

BLAST of Cp4.1LG03g16410 vs. TAIR 10
Match: AT4G05400.1 (copper ion binding )

HSP 1 Score: 286.2 bits (731), Expect = 2.5e-77
Identity = 157/258 (60.85%), Postives = 200/258 (77.52%), Query Frame = 0


Query: 1   MIRFAKLKSLVPSADSGSHHLLQRCWVSGTAKGKSKIKAGQQLKRSKITIKKGGAASSKG 60
           MIR  K K+++   +S S+HL+QRC  SGT KGK+K+K GQ LKR+K++IKKGG     G
Sbjct: 1   MIRVTKPKAII---ESLSYHLIQRCSASGTPKGKAKLKTGQPLKRNKLSIKKGG-----G 60

Query: 61  GGGG---------GGRKISLEQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISKER 120
           GGG          G  +IS E++KLY+QCLNAP P+R+L P++ EREA+REKLGLISKE+
Sbjct: 61  GGGAPVEGEEAVKGKGRISDEKQKLYEQCLNAPCPVRYLTPQEIEREAQREKLGLISKEK 120

Query: 121 QREIEMMKM-DKSKLGVSDSPSIIGTMGLDLITLGVVDADKIPKYELTVEDGRRLAKEYS 180
           QR++E+ K    + +GV+D P  IGT GLD I+LG+ +A+++PKY+LT EDG RLAKEYS
Sbjct: 121 QRDMEIQKKGGAASMGVTDEPMRIGTPGLDYISLGIFEAEELPKYKLTEEDGERLAKEYS 180

Query: 181 RVLMRRHRARQAAESTLLRMKKDAIEALPEHLKAAALVPDLTPFPANRFMATLTPPIEGY 240
           +VLMR HR R+AAE+ LL +KK AIEALPE+LK AAL PDLTPFPANR MATLTPPIEGY
Sbjct: 181 KVLMREHRERRAAETALLNLKKSAIEALPENLKKAALEPDLTPFPANRGMATLTPPIEGY 240

Query: 241 IEKINEVAKRSSGKEKLR 249
           +EK+ + AK+SS KEKLR
Sbjct: 241 LEKVMDAAKKSSSKEKLR 250

[Close]

BLAST of Cp4.1LG03g16410 vs. TAIR 10
Match: AT4G05400.2 (copper ion binding )

HSP 1 Score: 286.2 bits (731), Expect = 2.5e-77
Identity = 157/258 (60.85%), Postives = 200/258 (77.52%), Query Frame = 0


Query: 1   MIRFAKLKSLVPSADSGSHHLLQRCWVSGTAKGKSKIKAGQQLKRSKITIKKGGAASSKG 60
           MIR  K K+++   +S S+HL+QRC  SGT KGK+K+K GQ LKR+K++IKKGG     G
Sbjct: 1   MIRVTKPKAII---ESLSYHLIQRCSASGTPKGKAKLKTGQPLKRNKLSIKKGG-----G 60

Query: 61  GGGG---------GGRKISLEQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISKER 120
           GGG          G  +IS E++KLY+QCLNAP P+R+L P++ EREA+REKLGLISKE+
Sbjct: 61  GGGAPVEGEEAVKGKGRISDEKQKLYEQCLNAPCPVRYLTPQEIEREAQREKLGLISKEK 120

Query: 121 QREIEMMKM-DKSKLGVSDSPSIIGTMGLDLITLGVVDADKIPKYELTVEDGRRLAKEYS 180
           QR++E+ K    + +GV+D P  IGT GLD I+LG+ +A+++PKY+LT EDG RLAKEYS
Sbjct: 121 QRDMEIQKKGGAASMGVTDEPMRIGTPGLDYISLGIFEAEELPKYKLTEEDGERLAKEYS 180

Query: 181 RVLMRRHRARQAAESTLLRMKKDAIEALPEHLKAAALVPDLTPFPANRFMATLTPPIEGY 240
           +VLMR HR R+AAE+ LL +KK AIEALPE+LK AAL PDLTPFPANR MATLTPPIEGY
Sbjct: 181 KVLMREHRERRAAETALLNLKKSAIEALPENLKKAALEPDLTPFPANRGMATLTPPIEGY 240

Query: 241 IEKINEVAKRSSGKEKLR 249
           +EK+ + AK+SS KEKLR
Sbjct: 241 LEKVMDAAKKSSSKEKLR 250

[Close]

BLAST of Cp4.1LG03g16410 vs. TAIR 10
Match: AT4G21140.1 (BEST Arabidopsis thaliana protein match is: copper ion binding (TAIR:AT4G05400.2); Has 41 Blast hits to 41 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 278.5 bits (711), Expect = 5.3e-75
Identity = 153/250 (61.20%), Postives = 194/250 (77.60%), Query Frame = 0


Query: 1   MIRFAKLKSLVPSADSGSHHLLQRCWVSGTAKGKSKIKAGQQLKRSKITIKKGGAASSKG 60
           MIRFA+ K   P  DS S++LLQ+C+ SGT KGKSK+K GQ LKR+K+TIKKGG      
Sbjct: 1   MIRFARPK---PIIDSVSYNLLQKCYASGTPKGKSKLKTGQSLKRNKLTIKKGGG----N 60

Query: 61  GGGGGGRKISLEQEKLYDQCLNAPTPLRFLKPKDREREAEREKLGLISKERQREIEMMKM 120
           GGG GG ++   + ++ DQC+NAP P+R+L+PK+REREA REKLGLISK RQ+EI+  K 
Sbjct: 61  GGGRGGDEVDKGKGRISDQCINAPCPVRYLRPKEREREARREKLGLISKARQKEIDFQKK 120

Query: 121 DKS-KLGVSDSPSIIGTMGLDLITLGVVDADKIPKYELTVEDGRRLAKEYSRVLMRRHRA 180
             S  +GV+ +P  IGT GLD I+LG+   D++PKY++TVEDG RLAKEYSRVLMR HRA
Sbjct: 121 GGSFTMGVTTAPMRIGTPGLDYISLGIFTEDELPKYKVTVEDGIRLAKEYSRVLMREHRA 180

Query: 181 RQAAESTLLRMKKDAIEALPEHLKAAALVPDLTPFPANRFMATLTPPIEGYIEKI-NEVA 240
           R+ AE +L++M+  A+EALPE+LK AALV DLTPFP +R  ATLTPPIEGY+E+I N  A
Sbjct: 181 RRVAEISLMKMRNAAVEALPENLKKAALVRDLTPFPVSRGTATLTPPIEGYLERIMNAAA 240

Query: 241 KRSSGKEKLR 249
           ++SSGKEKLR
Sbjct: 241 RKSSGKEKLR 243

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g16410 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g16410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023527048.1	1.85e-166	100.00	uncharacterized protein LOC111790399 [Cucurbita pepo subsp. pepo]	[more]
XP_022924790.1	2.53e-164	98.79	uncharacterized protein LOC111432182 [Cucurbita moschata] >KAG6582653.1 hypothet...	[more]
XP_022980123.1	3.44e-162	97.58	uncharacterized protein LOC111479606 [Cucurbita maxima]	[more]
XP_038906439.1	7.01e-148	90.32	uncharacterized protein LOC120092349 [Benincasa hispida]	[more]
XP_022147522.1	5.12e-145	87.90	uncharacterized protein LOC111016425 [Momordica charantia]	[more]

BLAST of Cp4.1LG03g16410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EG20	1.22e-164	98.79	uncharacterized protein LOC111432182 OS=Cucurbita moschata OX=3662 GN=LOC1114321...	[more]
A0A6J1IYC8	1.66e-162	97.58	uncharacterized protein LOC111479606 OS=Cucurbita maxima OX=3661 GN=LOC111479606...	[more]
A0A6J1D2K4	2.48e-145	87.90	uncharacterized protein LOC111016425 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A5D3D1D4	1.71e-141	86.69	Copper ion binding isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
E5GCH1	1.71e-141	86.69	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of Cp4.1LG03g16410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G05400.1	2.5e-77	60.85	copper ion binding	[more]
AT4G05400.2	2.5e-77	60.85	copper ion binding	[more]
AT4G21140.1	5.3e-75	61.20	BEST Arabidopsis thaliana protein match is: copper ion binding (TAIR:AT4G05400.2...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039145	39S ribosomal protein L40, mitochondrial	PANTHER	PTHR13359	39S RIBOSOMAL PROTEIN L40, MITOCHONDRIAL	coord: 1..248

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g16410.1	Cp4.1LG03g16410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005762	mitochondrial large ribosomal subunit