Cp4.1LG03g15910 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG03g15910
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description3-ketoacyl-CoA synthase 1
LocationCp4.1LG03: 13572945 .. 13574353 (-)
RNA-Seq ExpressionCp4.1LG03g15910
SyntenyCp4.1LG03g15910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGTTCGAAGCTTGTAGTGGTTCACTATCATGGCGGATAGTGATGGTATGGGGTTGAATAAGCTGCAATTGACGATTAGAATTCCTATTTCACTCGGGTCCAAGCCGGTTTTCTCGAACAAAGCATCGAGTGCGCCGAACATTACAGTCTCTGCTTCGAAGCGTGCTTCGTCGAGACACAAATTCGGCGGCCGAGAAGTAATTCCTCTCGACAAGTAGGTTTCGTCGCCAAGACCGGCTCGTTTTGCTACTTTCGACATGAACTTAAGGTCATCCTCTTGAAAGCCTCCGCTCTCTACACTCATCTCCAGGAAGCTGTCCACCGACACCTTCCTCGCATCCTCTGGTTTGTGACAGGCAAACTCTACCAGATAAACCGGTGTGGATCGCTTGGAACAATAGAGGGCAAGGAGAAGTATCGAGAGACAACCGGCTACGGCCGTAGTTGCATCAATCCCATGTTGAAATCTTGTGGTGGGCAATAAGTCAGACACCCGGAAGAGTTTGAAGCCGGAAAGCTGAATGGCAATGGAAATAAACAGCGGCAAAATGACTAGAAACATAAGAGTAGTGGCAGAGTTGCATGAGTACCCGTATCCTAATTTGACATATTTGAGCTTGACTGACTGCAGAAAGTCCGGCAAGCGTTGCCGGATTCTGATGATGATGGAAGAGGAGTCCTTAAGTTCCATTTCTGCCGTTAGTCTCTCTGCATCCATCTCAATGCTATTCATATTATCTGTCTTGCTAATTTCTCTGTGATATAGTCTTAGTTTTTGTGCAGCACTCTCTGAAATCTTAGGCTTATATAGATCCAAGGAGAAGGAAGTTCAGAGAAGAAGAGGGATAGAGGCAGAAATTAATGAAGGCAAAGACTTTCACCTCTTTCAAACTACCAGCTGGTTGGGTGGTGCGAAACACAGAGAAAAAAAAAAGGGAAAGAGGTAGAGAGGCAGAGAGGGTTTGGCACTTGGCGGCACCAAGCAAGAGTAGATATATATGAATAGCAGAGAAGTGAAAGGAAGGAAGGAAGGAAGGAGGAGGTGTGGTTCTCAAATAAATGGGAGTAGTTCCAAGAACGGTGAGATAGGTCAACAACCATACACCTCTGCAGGTAAGTTGGAGAGAGACATATCTAATAAGGAACTTAATAAATGGAGAAATCATTTTCAAATTGTAGTGGTTTTGGGAGTGGTAGTTAGATATTTATTTGCATATCTTCTTAAATGACACCTCTCTCCGCAGTGCACACTCTTGTGGGTATGTAGGCAGCCTTATTTGGGTTGGAAACATCTAGCTCCACGCTAAAAGGAATTCCATCTCCGAGTCACTTCCATTCCATGTAGCTCTTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTGTTTGTAGATATGAATGAATAA

mRNA sequence

ATGTCGTGGTTCACTATCATGGCGGATAGTGATGGTATGGGGTTGAATAAGCTGCAATTGACGATTAGAATTCCTATTTCACTCGGGTCCAAGCCGGTTTTCTCGAACAAAGCATCGAGTGCGCCGAACATTACAGTCTCTGCTTCGAAGCGTGCTTCGTCGAGACACAAATTCGGCGGCCGAGAAGTCATCCTCTTGAAAGCCTCCGCTCTCTACACTCATCTCCAGGAAGCTGTCCACCGACACCTTCCTCGCATCCTCTGGTTTGTGACAGGCAAACTCTACCAGATAAACCGGTGTGGATCGCTTGGAACAATAGAGGGCAAGGAGAAGTATCGAGAGACAACCGGCTACGGCCGTAGTTGCATCAATCCCATGTTGAAATCTTGTGCACTCTCTGAAATCTTAGGCTTATATAGATCCAAGGAGAAGGAAGTTCAGAGAAGAAGAGGGATAGAGGCAGAAATTAATGAAGGCAAAGACTTTCACCTCTTTCAAACTACCAGCTGGTTGGGTGGTGCGAAACACAGAGAAAAAAAAAAGGGAAAGAGAGAAGTGAAAGGAAGGAAGGAAGGAAGGAGGAGGTGTGGTTCTCAAATAAATGGGAGTAGTTCCAAGAACGGTGAGATAGGTCAACAACCATACACCTCTGCAGATATGAATGAATAA

Coding sequence (CDS)

ATGTCGTGGTTCACTATCATGGCGGATAGTGATGGTATGGGGTTGAATAAGCTGCAATTGACGATTAGAATTCCTATTTCACTCGGGTCCAAGCCGGTTTTCTCGAACAAAGCATCGAGTGCGCCGAACATTACAGTCTCTGCTTCGAAGCGTGCTTCGTCGAGACACAAATTCGGCGGCCGAGAAGTCATCCTCTTGAAAGCCTCCGCTCTCTACACTCATCTCCAGGAAGCTGTCCACCGACACCTTCCTCGCATCCTCTGGTTTGTGACAGGCAAACTCTACCAGATAAACCGGTGTGGATCGCTTGGAACAATAGAGGGCAAGGAGAAGTATCGAGAGACAACCGGCTACGGCCGTAGTTGCATCAATCCCATGTTGAAATCTTGTGCACTCTCTGAAATCTTAGGCTTATATAGATCCAAGGAGAAGGAAGTTCAGAGAAGAAGAGGGATAGAGGCAGAAATTAATGAAGGCAAAGACTTTCACCTCTTTCAAACTACCAGCTGGTTGGGTGGTGCGAAACACAGAGAAAAAAAAAAGGGAAAGAGAGAAGTGAAAGGAAGGAAGGAAGGAAGGAGGAGGTGTGGTTCTCAAATAAATGGGAGTAGTTCCAAGAACGGTGAGATAGGTCAACAACCATACACCTCTGCAGATATGAATGAATAA

Protein sequence

MSWFTIMADSDGMGLNKLQLTIRIPISLGSKPVFSNKASSAPNITVSASKRASSRHKFGGREVILLKASALYTHLQEAVHRHLPRILWFVTGKLYQINRCGSLGTIEGKEKYRETTGYGRSCINPMLKSCALSEILGLYRSKEKEVQRRRGIEAEINEGKDFHLFQTTSWLGGAKHREKKKGKREVKGRKEGRRRCGSQINGSSSKNGEIGQQPYTSADMNE
Homology
[Close]
BLAST of Cp4.1LG03g15910 vs. NCBI nr
Match: KAF4366513.1 (hypothetical protein F8388_003751 [Cannabis sativa])

HSP 1 Score: 72.8 bits (177), Expect = 3.69e-12
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 0 

Query: 7  MADSDGMGLNKLQLTIRIPISLGSKPVFSNKASSAPNITVSASKRASSRHKFGG 60
          MAD +G+GLNKLQLTIRIP+SLG  PV +   S APN+TVSAS RASS  +FGG
Sbjct: 1  MADKEGVGLNKLQLTIRIPMSLGLTPVLAKSESKAPNMTVSASNRASSMFRFGG 54

[Close]
BLAST of Cp4.1LG03g15910 vs. NCBI nr
Match: RXH92939.1 (hypothetical protein DVH24_011963 [Malus domestica])

HSP 1 Score: 65.5 bits (158), Expect = 1.84e-08
Identity = 36/62 (58.06%), Postives = 41/62 (66.13%), Query Frame = 0 

Query: 3   WFTIMADSDGMGLNKLQLTIRIPISLGSKPVFSNKASSAPNITVSASKRASSRHKFGGRE 62
           W TIM DSDG+GLN+LQ T+R+ I  G  PVF    S APN+T SAS RA S    GG E
Sbjct: 231 WLTIMDDSDGVGLNRLQFTMRMSIWFGLIPVFLKSESRAPNMTDSASDRACSMDSCGGLE 290

Query: 63  VI 64
           VI
Sbjct: 291 VI 292

[Close]
BLAST of Cp4.1LG03g15910 vs. NCBI nr
Match: EYU45169.1 (hypothetical protein MIMGU_mgv1a015965mg [Erythranthe guttata])

HSP 1 Score: 62.0 bits (149), Expect = 3.05e-08
Identity = 35/56 (62.50%), Postives = 40/56 (71.43%), Query Frame = 0 

Query: 5   TIMADSDGMGLNKLQLTIRIPISLGSKPVFSNKASSAPNITVSASKRASSRHKFGG 60
           TIMA+S+G+GLNKLQLT R+PI  G   V  NK SSAPNIT SAS RA+     GG
Sbjct: 76  TIMAESEGVGLNKLQLTTRMPICFGLTFVLRNKLSSAPNITCSASSRAACIDGRGG 131

[Close]
BLAST of Cp4.1LG03g15910 vs. NCBI nr
Match: CAA2632020.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 63.5 bits (153), Expect = 8.39e-08
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 0 

Query: 4   FTIMADSDGMGLNKLQLTIRIPISLGSKPVFSNKASSAPNITVSASKRASSRHKFGGRE 62
           FTIM + DG+GLNKLQLT R+P+S G   V   + SS PN+T SAS RA +   +GGR+
Sbjct: 228 FTIMEERDGVGLNKLQLTTRMPMSFGRTEVLQKRISSVPNMTCSASSRAVAMEGWGGRQ 286

[Close]
BLAST of Cp4.1LG03g15910 vs. NCBI nr
Match: CAA7408344.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 63.5 bits (153), Expect = 8.52e-08
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 0 

Query: 4   FTIMADSDGMGLNKLQLTIRIPISLGSKPVFSNKASSAPNITVSASKRASSRHKFGGRE 62
           FTIM + DG+GLNKLQLT R+P+S G   V   + SS PN+T SAS RA +   +GGR+
Sbjct: 232 FTIMEERDGVGLNKLQLTTRMPMSFGRTEVLQKRISSVPNMTCSASSRAVAMEGWGGRQ 290

[Close]
BLAST of Cp4.1LG03g15910 vs. ExPASy TrEMBL
Match: A0A2P2QQP1 (3-ketoacyl-CoA synthase 1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.57e-13
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 0 

Query: 7  MADSDGMGLNKLQLTIRIPISLGSKPVFSNKASSAPNITVSASKRASSRHKFGGREVILL 66
          M +SDG+GLNKLQ TIR+P+SLG  PV +  ASSAPN+T SAS RAS   KFGG +VI L
Sbjct: 1  MEESDGVGLNKLQFTIRMPMSLGLTPVLAKSASSAPNMTDSASARASFMLKFGGLDVIPL 60

[Close]
BLAST of Cp4.1LG03g15910 vs. ExPASy TrEMBL
Match: A0A7J6F722 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_003751 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.79e-12
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 0 

Query: 7  MADSDGMGLNKLQLTIRIPISLGSKPVFSNKASSAPNITVSASKRASSRHKFGG 60
          MAD +G+GLNKLQLTIRIP+SLG  PV +   S APN+TVSAS RASS  +FGG
Sbjct: 1  MADKEGVGLNKLQLTIRIPMSLGLTPVLAKSESKAPNMTVSASNRASSMFRFGG 54

[Close]
BLAST of Cp4.1LG03g15910 vs. ExPASy TrEMBL
Match: A0A7C9CZH1 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.13e-09
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 0 

Query: 5  TIMADSDGMGLNKLQLTIRIPISLGSKPVFSNKASSAPNITVSASKRASSRHKFGGREVI 64
          TIMA+SDG+GLNKLQ T +IPISLG  PV + ++S APNIT SAS  A++    GG E I
Sbjct: 10 TIMAESDGVGLNKLQFTTKIPISLGLTPVVAKRSSRAPNITSSASFLAAAIDGRGGIECI 69

Query: 65 LL 66
           +
Sbjct: 70 AI 71

[Close]
BLAST of Cp4.1LG03g15910 vs. ExPASy TrEMBL
Match: A0A498JAU6 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_011963 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.92e-09
Identity = 36/62 (58.06%), Postives = 41/62 (66.13%), Query Frame = 0 

Query: 3   WFTIMADSDGMGLNKLQLTIRIPISLGSKPVFSNKASSAPNITVSASKRASSRHKFGGRE 62
           W TIM DSDG+GLN+LQ T+R+ I  G  PVF    S APN+T SAS RA S    GG E
Sbjct: 231 WLTIMDDSDGVGLNRLQFTMRMSIWFGLIPVFLKSESRAPNMTDSASDRACSMDSCGGLE 290

Query: 63  VI 64
           VI
Sbjct: 291 VI 292

[Close]
BLAST of Cp4.1LG03g15910 vs. ExPASy TrEMBL
Match: A0A022RYN3 (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a015965mg PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.48e-08
Identity = 35/56 (62.50%), Postives = 40/56 (71.43%), Query Frame = 0 

Query: 5   TIMADSDGMGLNKLQLTIRIPISLGSKPVFSNKASSAPNITVSASKRASSRHKFGG 60
           TIMA+S+G+GLNKLQLT R+PI  G   V  NK SSAPNIT SAS RA+     GG
Sbjct: 76  TIMAESEGVGLNKLQLTTRMPICFGLTFVLRNKLSSAPNITCSASSRAACIDGRGG 131

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g15910 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g15910 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF4366513.13.69e-1268.52hypothetical protein F8388_003751 [Cannabis sativa][more]
RXH92939.11.84e-0858.06hypothetical protein DVH24_011963 [Malus domestica][more]
EYU45169.13.05e-0862.50hypothetical protein MIMGU_mgv1a015965mg [Erythranthe guttata][more]
CAA2632020.18.39e-0854.24unnamed protein product [Spirodela intermedia][more]
CAA7408344.18.52e-0854.24unnamed protein product [Spirodela intermedia][more]
BLAST of Cp4.1LG03g15910 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P2QQP17.57e-1365.003-ketoacyl-CoA synthase 1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
A0A7J6F7221.79e-1268.52Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_003751 PE=4 SV=1[more]
A0A7C9CZH11.13e-0958.06Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A498JAU68.92e-0958.06Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_011963 PE=4 SV=1[more]
A0A022RYN31.48e-0862.50Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a015965mg PE... [more]
BLAST of Cp4.1LG03g15910 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 197..222
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 173..222
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..190

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g15910.1Cp4.1LG03g15910.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane