Cp4.1LG03g15380 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g15380
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG03: 7637468 .. 7638521 (-)
RNA-Seq Expression	Cp4.1LG03g15380
Synteny	Cp4.1LG03g15380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCTCACTGAAGATGAAATCAATCCAATGGAAAACGTAACAGCGAGCGAATTGGCCGGCTTCGCTGTGGGGGCTCTGCTCGTTTGTGCCACCATTTCTGCCCCTCGAATAGATGCCTTCATCTCTTCGTCTCAGCGCAGGTCTGTTCTATTCTTCCCATTTTCACTTTTCAACGCTGATTTACATGATTTTATTTTCTGGGTTCTTCTTCAATTCCCAAAATTCACCCAAATTTTGGTGGGTTCTGTGTGATAATTAGATGGAGGAACCCAAATTGAACAGAACCCATGAATTGAATTCGTTCGACTTAGAAAGAAAGTTCACTTAGGTTTTTGGTTCGTTGTGTCTCTCTGTTGGGCACTGGTGGATTGTGTAGGCATTTGTAGATAAGAAAGCTAAATTGGTTGCATCTACTACTTGTACTTTGAAAATATTCTTGTATCAAGATTATTTCAATGGGTAAATTCGGATTGGTGTTGTTCATATCTGATAATTGTATTTTGAGTTACTTAGTTCTGTATGTAAAGGGGTTTTGAGTATAGAACTTGTTTGAGGATCTGGGGATGAATGTGATTACATTGTGTGTTCTAACAGATCGTTGGGCATGTGCAAGAGATGTGGTGACCTGAGGATGATAGCATGTTCAAGATGTAAAGGAGTTGGATCAACCAAATCAGGTGGAGTATTTGCTGAGCTTTACGAATCATTTGGCAAAGACGAACCTAATGCGCCCTCTATCCCGTGCACGAGGTGCAATGCTAAAGGTCGCTTCCCATGTCCAGATTGCTGCTCTCAAATGCCATGAACTTCACTCTCATATAATGCTCCCATTATGTCACAATTTCACTCATCATTTTCTCTCCTCTGCTTTCTTTTCCCCTTCTTTTTACTAGTTTTGATGCATCAATGGTAATCAAGATTTCTACTTTAAAACACATTTGTGAAAAACACTTCCCTTTCATGCTTTTGTAAAGGTTAGCATGATACAAGAATGGTATTATTTGGGAAATTTTATTTCGTTTCCTTTTCGACGAAATCGAAAGTTTAAAGTTCGA

mRNA sequence

TGCTCACTGAAGATGAAATCAATCCAATGGAAAACGTAACAGCGAGCGAATTGGCCGGCTTCGCTGTGGGGGCTCTGCTCGTTTGTGCCACCATTTCTGCCCCTCGAATAGATGCCTTCATCTCTTCGTCTCAGCGCAGATCGTTGGGCATGTGCAAGAGATGTGGTGACCTGAGGATGATAGCATGTTCAAGATGTAAAGGAGTTGGATCAACCAAATCAGGTGGAGTATTTGCTGAGCTTTACGAATCATTTGGCAAAGACGAACCTAATGCGCCCTCTATCCCGTGCACGAGGTGCAATGCTAAAGGTCGCTTCCCATGTCCAGATTGCTGCTCTCAAATGCCATGAACTTCACTCTCATATAATGCTCCCATTATGTCACAATTTCACTCATCATTTTCTCTCCTCTGCTTTCTTTTCCCCTTCTTTTTACTAGTTTTGATGCATCAATGGTAATCAAGATTTCTACTTTAAAACACATTTGTGAAAAACACTTCCCTTTCATGCTTTTGTAAAGGTTAGCATGATACAAGAATGGTATTATTTGGGAAATTTTATTTCGTTTCCTTTTCGACGAAATCGAAAGTTTAAAGTTCGA

Coding sequence (CDS)

ATGGAAAACGTAACAGCGAGCGAATTGGCCGGCTTCGCTGTGGGGGCTCTGCTCGTTTGTGCCACCATTTCTGCCCCTCGAATAGATGCCTTCATCTCTTCGTCTCAGCGCAGATCGTTGGGCATGTGCAAGAGATGTGGTGACCTGAGGATGATAGCATGTTCAAGATGTAAAGGAGTTGGATCAACCAAATCAGGTGGAGTATTTGCTGAGCTTTACGAATCATTTGGCAAAGACGAACCTAATGCGCCCTCTATCCCGTGCACGAGGTGCAATGCTAAAGGTCGCTTCCCATGTCCAGATTGCTGCTCTCAAATGCCATGA

Protein sequence

MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGVGSTKSGGVFAELYESFGKDEPNAPSIPCTRCNAKGRFPCPDCCSQMP

Homology

[Close]

BLAST of Cp4.1LG03g15380 vs. NCBI nr
Match: XP_023528018.1 (uncharacterized protein LOC111791062 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 219 bits (557), Expect = 1.07e-71
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV 60
           MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV
Sbjct: 10  MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV 69

Query: 61  GSTKSGGVFAELYESFGKDEPNAPSIPCTRCNAKGRFPCPDCCSQMP 107
           GSTKSGGVFAELYESFGKDEPNAPSIPCTRCNAKGRFPCPDCCSQMP
Sbjct: 70  GSTKSGGVFAELYESFGKDEPNAPSIPCTRCNAKGRFPCPDCCSQMP 116

[Close]

BLAST of Cp4.1LG03g15380 vs. NCBI nr
Match: XP_022980758.1 (uncharacterized protein LOC111480031 [Cucurbita maxima])

HSP 1 Score: 218 bits (554), Expect = 3.08e-71
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV 60
           MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACS+CKGV
Sbjct: 10  MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 69

Query: 61  GSTKSGGVFAELYESFGKDEPNAPSIPCTRCNAKGRFPCPDCCSQMP 107
           GSTKSGGVFAELYESFGKDEPNAPSIPCTRCNAKGRFPCPDCCSQMP
Sbjct: 70  GSTKSGGVFAELYESFGKDEPNAPSIPCTRCNAKGRFPCPDCCSQMP 116

[Close]

BLAST of Cp4.1LG03g15380 vs. NCBI nr
Match: XP_022955904.1 (uncharacterized protein LOC111457749 [Cucurbita moschata] >KAG6581722.1 hypothetical protein SDJN03_21724, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018197.1 hypothetical protein SDJN02_20065 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 217 bits (552), Expect = 4.65e-71
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV 60
           MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV
Sbjct: 1   MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV 60

Query: 61  GSTKSGGVFAELYESFGKDEPNAPSIPCTRCNAKGRFPCPDCCSQMP 107
           GSTKSGGVFAELYESFGKDEP+APSIPCTRCNAKGRFPCPDCCSQMP
Sbjct: 61  GSTKSGGVFAELYESFGKDEPDAPSIPCTRCNAKGRFPCPDCCSQMP 107

[Close]

BLAST of Cp4.1LG03g15380 vs. NCBI nr
Match: XP_038901067.1 (uncharacterized protein LOC120088085 [Benincasa hispida])

HSP 1 Score: 192 bits (489), Expect = 2.23e-61
Identity = 96/111 (86.49%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 1   MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV 60
           ME++T SELAGFAVGALLVCA+ISAPRIDAFISSSQRRSLGMCKRCGDLRMIACS+CKGV
Sbjct: 1   MESITGSELAGFAVGALLVCASISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60

Query: 61  GSTKSGGVF-----AELYESFGKDEPNAPSIPCTRCNAKGRFPCPDCCSQM 106
           GS KSGG+F     AE YESFGKDE NAPSIPCTRCNAKGRF CPDCCSQM
Sbjct: 61  GSIKSGGLFGVNILAEFYESFGKDESNAPSIPCTRCNAKGRFQCPDCCSQM 111

[Close]

BLAST of Cp4.1LG03g15380 vs. NCBI nr
Match: XP_004137138.1 (uncharacterized protein LOC101207960 [Cucumis sativus] >KGN53782.1 hypothetical protein Csa_015216 [Cucumis sativus])

HSP 1 Score: 189 bits (479), Expect = 7.95e-60
Identity = 93/111 (83.78%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 1   MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV 60
           ME++T SELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACS+CKGV
Sbjct: 1   MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60

Query: 61  GSTKSGGVF-----AELYESFGKDEPNAPSIPCTRCNAKGRFPCPDCCSQM 106
           GSTKSGG+F     A+ YE+ GKDE N PSIPCTRCNAKGRF CPDCCSQ+
Sbjct: 61  GSTKSGGLFGINILADFYEALGKDESNVPSIPCTRCNAKGRFRCPDCCSQL 111

[Close]

BLAST of Cp4.1LG03g15380 vs. ExPASy TrEMBL
Match: A0A6J1J083 (uncharacterized protein LOC111480031 OS=Cucurbita maxima OX=3661 GN=LOC111480031 PE=4 SV=1)

HSP 1 Score: 218 bits (554), Expect = 1.49e-71
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV 60
           MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACS+CKGV
Sbjct: 10  MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 69

Query: 61  GSTKSGGVFAELYESFGKDEPNAPSIPCTRCNAKGRFPCPDCCSQMP 107
           GSTKSGGVFAELYESFGKDEPNAPSIPCTRCNAKGRFPCPDCCSQMP
Sbjct: 70  GSTKSGGVFAELYESFGKDEPNAPSIPCTRCNAKGRFPCPDCCSQMP 116

[Close]

BLAST of Cp4.1LG03g15380 vs. ExPASy TrEMBL
Match: A0A6J1GXK9 (uncharacterized protein LOC111457749 OS=Cucurbita moschata OX=3662 GN=LOC111457749 PE=4 SV=1)

HSP 1 Score: 217 bits (552), Expect = 2.25e-71
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV 60
           MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV
Sbjct: 1   MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV 60

Query: 61  GSTKSGGVFAELYESFGKDEPNAPSIPCTRCNAKGRFPCPDCCSQMP 107
           GSTKSGGVFAELYESFGKDEP+APSIPCTRCNAKGRFPCPDCCSQMP
Sbjct: 61  GSTKSGGVFAELYESFGKDEPDAPSIPCTRCNAKGRFPCPDCCSQMP 107

[Close]

BLAST of Cp4.1LG03g15380 vs. ExPASy TrEMBL
Match: A0A0A0KZH5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G127010 PE=4 SV=1)

HSP 1 Score: 189 bits (479), Expect = 3.85e-60
Identity = 93/111 (83.78%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 1   MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV 60
           ME++T SELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACS+CKGV
Sbjct: 1   MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60

Query: 61  GSTKSGGVF-----AELYESFGKDEPNAPSIPCTRCNAKGRFPCPDCCSQM 106
           GSTKSGG+F     A+ YE+ GKDE N PSIPCTRCNAKGRF CPDCCSQ+
Sbjct: 61  GSTKSGGLFGINILADFYEALGKDESNVPSIPCTRCNAKGRFRCPDCCSQL 111

[Close]

BLAST of Cp4.1LG03g15380 vs. ExPASy TrEMBL
Match: A0A6J1DQH1 (uncharacterized protein LOC111022174 OS=Momordica charantia OX=3673 GN=LOC111022174 PE=4 SV=1)

HSP 1 Score: 186 bits (473), Expect = 3.07e-59
Identity = 92/110 (83.64%), Postives = 100/110 (90.91%), Query Frame = 0


Query: 1   MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV 60
           MENVTASE+AGFAVGALLVCATISAPRIDAFISSSQR SLGMCKRCGDLRMIACS+C+GV
Sbjct: 1   MENVTASEVAGFAVGALLVCATISAPRIDAFISSSQRSSLGMCKRCGDLRMIACSKCRGV 60

Query: 61  GSTKSGGVF-----AELYESFGKDEPNAPSIPCTRCNAKGRFPCPDCCSQ 105
           GSTK+GG+F     A+ YESFG+DE N PSIPC+RCNAKGRF CPDCCSQ
Sbjct: 61  GSTKAGGLFGVNILADFYESFGRDESNLPSIPCSRCNAKGRFSCPDCCSQ 110

[Close]

BLAST of Cp4.1LG03g15380 vs. ExPASy TrEMBL
Match: A0A1S3CMA9 (uncharacterized protein LOC103502417 OS=Cucumis melo OX=3656 GN=LOC103502417 PE=4 SV=1)

HSP 1 Score: 173 bits (438), Expect = 6.45e-54
Identity = 89/111 (80.18%), Postives = 95/111 (85.59%), Query Frame = 0


Query: 1   MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV 60
           ME++T SELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACS+CKGV
Sbjct: 1   MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60

Query: 61  GSTKSGGVF-----AELYESFGKDEPNAPSIPCTRCNAKGRFPCPDCCSQM 106
           GSTKSGG+F     A+ YES    E N PSIPC RCNAKGRF CPDC SQ+
Sbjct: 61  GSTKSGGLFGINILADFYESL--SESNVPSIPCMRCNAKGRFQCPDCSSQL 109

[Close]

BLAST of Cp4.1LG03g15380 vs. TAIR 10
Match: AT5G15802.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35 Blast hits to 35 proteins in 15 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 123.6 bits (309), Expect = 9.4e-29
Identity = 58/102 (56.86%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 1   MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV 60
           M+++T++E+AG AVGALL+ ATI+AP++DAFI++SQRRSLGMC++CGDL+ +AC RCKG 
Sbjct: 1   MQSLTSNEVAGLAVGALLLGATIAAPKVDAFIAASQRRSLGMCRKCGDLKNVACGRCKGT 60

Query: 61  GSTKSGGVFAELYESFGKDEPNAPSIPCTRCNAKGRFPCPDC 103
           G+ KSGG F         D  N  S+ C  C AKG FPCP+C
Sbjct: 61  GTIKSGGFFG------FSDSSNTRSVACDNCQAKGCFPCPEC 96

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g15380 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g15380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023528018.1	1.07e-71	100.00	uncharacterized protein LOC111791062 [Cucurbita pepo subsp. pepo]	[more]
XP_022980758.1	3.08e-71	99.07	uncharacterized protein LOC111480031 [Cucurbita maxima]	[more]
XP_022955904.1	4.65e-71	99.07	uncharacterized protein LOC111457749 [Cucurbita moschata] >KAG6581722.1 hypothet...	[more]
XP_038901067.1	2.23e-61	86.49	uncharacterized protein LOC120088085 [Benincasa hispida]	[more]
XP_004137138.1	7.95e-60	83.78	uncharacterized protein LOC101207960 [Cucumis sativus] >KGN53782.1 hypothetical ...	[more]

BLAST of Cp4.1LG03g15380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J083	1.49e-71	99.07	uncharacterized protein LOC111480031 OS=Cucurbita maxima OX=3661 GN=LOC111480031...	[more]
A0A6J1GXK9	2.25e-71	99.07	uncharacterized protein LOC111457749 OS=Cucurbita moschata OX=3662 GN=LOC1114577...	[more]
A0A0A0KZH5	3.85e-60	83.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G127010 PE=4 SV=1	[more]
A0A6J1DQH1	3.07e-59	83.64	uncharacterized protein LOC111022174 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A1S3CMA9	6.45e-54	80.18	uncharacterized protein LOC103502417 OS=Cucumis melo OX=3656 GN=LOC103502417 PE=...	[more]

BLAST of Cp4.1LG03g15380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15802.1	9.4e-29	56.86	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37760	CHAPERONE	coord: 1..105
None	No IPR available	PANTHER	PTHR37760:SF1	CHAPERONE	coord: 1..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g15380.1	Cp4.1LG03g15380.1	mRNA