Cp4.1LG03g15050 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g15050
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	ylmG homolog protein 1-2, chloroplastic
Location	Cp4.1LG03: 8222644 .. 8223922 (-)
RNA-Seq Expression	Cp4.1LG03g15050
Synteny	Cp4.1LG03g15050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTATTATTTTTATTTCCACATTATCTTCCCCCTTCACATTTCTGCGTCCGCGGCCTCAATTTTGCCGATAAACAAACCACACCCAACTATGGCGTCTTCCCTAATCGCTTCTCAAGCTCTGCCCCTCCGACGCCCCGTTCTCCCGCCGAAGCTCCACCCTTCTATTGCCATTTATTCCCACTCCTTCAACCGCCCACTACCTTCTCCGCTCCCCCTCCGTTTCTGCACCGCCAACTCTCCAAATCACGGCCTTAGGGTTTTAGCTTCCTCATCGCCTTCTGCTTATTCACCAAAACTTTCCAATCAATCAGAAGAAATTCCGATTGGATCTCTCCTTACCGGTCCGACCCGGGTACTTGCTACTATTCTATCTATATCCTTAACATTTTCGACCTTGATTGTCAAACTGGTTCAGAATGTTTGGCCGAGTTTGATTGCCCAATGTCTCGTAAATCCATGTACTGGGCTCGGTGCCTTCCAGCCGGCTGGCTCTTTGTTCTTCGCTGCACTAGTCGACCGCCCTGGCGGAAATCTCAACACGCCTTTGACGGTGGTGGCTGCGGGGTTGGCCAAGTGGCTGGATATTTACAGTGGGGTTCTGCTGGTTAGGGTTTTGCTGAGTTGGTTCCCCAATATCCCTTGGGACCGGCAGCCACTCTCTGCAATTCGTGATCTCTGTGATCCGTACTTGAACCTGTTCCGGAATATAATCCCTCCAATATTCGACACCCTGGATGTTAGCCCACTTTTGGCTTTTGCTGTTCTGGGCACACTAGGGTCAATTCTGAAAAAGTAGCAGGGGCATGTATTGAAGGAGGCTACGAGTGGATTTGGTTGGTTGGTTGGTTAGTGGCGGAATTTACGACGAGTAAGGTATAATTCAATTCATCAAAATTTGGATTTGAGTTTTGGGGTTTTGGATATATCGTAATTTGCTTTTATTTCTGTTTTTCTTCTTCAGGGGATTTGAGTTTGCGAGACATGATTGTAAATTTTAGTTAAAACAGTTGAATTTTGACAGCTTTTAATGAAGCATTTGTTCGATGAGGTTATCGTTTCGGTTTATGTAATCTCCGTTTCAGACTTAGAAAAGGATGGTATATTTGAATTTGTTTGCTCGGCATAAATTATCATCTGCTGTGGTACTTTTCAGCAGTTTTACTACCCAGCCTTTTGCATACAGCTTGCTGAATGATTTAACACTGCTCCGATTACTATCTTTGCTATGTTTATGTTATAAGAATAATATATGGGCTAAGAATATAAAGGTGGTAATCA

mRNA sequence

GTTATTATTTTTATTTCCACATTATCTTCCCCCTTCACATTTCTGCGTCCGCGGCCTCAATTTTGCCGATAAACAAACCACACCCAACTATGGCGTCTTCCCTAATCGCTTCTCAAGCTCTGCCCCTCCGACGCCCCGTTCTCCCGCCGAAGCTCCACCCTTCTATTGCCATTTATTCCCACTCCTTCAACCGCCCACTACCTTCTCCGCTCCCCCTCCGTTTCTGCACCGCCAACTCTCCAAATCACGGCCTTAGGGTTTTAGCTTCCTCATCGCCTTCTGCTTATTCACCAAAACTTTCCAATCAATCAGAAGAAATTCCGATTGGATCTCTCCTTACCGGTCCGACCCGGGTACTTGCTACTATTCTATCTATATCCTTAACATTTTCGACCTTGATTGTCAAACTGGTTCAGAATGTTTGGCCGAGTTTGATTGCCCAATGTCTCGTAAATCCATGTACTGGGCTCGGTGCCTTCCAGCCGGCTGGCTCTTTGTTCTTCGCTGCACTAGTCGACCGCCCTGGCGGAAATCTCAACACGCCTTTGACGGTGGTGGCTGCGGGGTTGGCCAAGTGGCTGGATATTTACAGTGGGGTTCTGCTGGTTAGGGTTTTGCTGAGTTGGTTCCCCAATATCCCTTGGGACCGGCAGCCACTCTCTGCAATTCGTGATCTCTGTGATCCGTACTTGAACCTGTTCCGGAATATAATCCCTCCAATATTCGACACCCTGGATGTTAGCCCACTTTTGGCTTTTGCTGTTCTGGGCACACTAGGGGGATTTGAGTTTGCGAGACATGATTGTAAATTTTAGTTAAAACAGTTGAATTTTGACAGCTTTTAATGAAGCATTTGTTCGATGAGGTTATCGTTTCGGTTTATGTAATCTCCGTTTCAGACTTAGAAAAGGATGGTATATTTGAATTTGTTTGCTCGGCATAAATTATCATCTGCTGTGGTACTTTTCAGCAGTTTTACTACCCAGCCTTTTGCATACAGCTTGCTGAATGATTTAACACTGCTCCGATTACTATCTTTGCTATGTTTATGTTATAAGAATAATATATGGGCTAAGAATATAAAGGTGGTAATCA

Coding sequence (CDS)

ATGGCGTCTTCCCTAATCGCTTCTCAAGCTCTGCCCCTCCGACGCCCCGTTCTCCCGCCGAAGCTCCACCCTTCTATTGCCATTTATTCCCACTCCTTCAACCGCCCACTACCTTCTCCGCTCCCCCTCCGTTTCTGCACCGCCAACTCTCCAAATCACGGCCTTAGGGTTTTAGCTTCCTCATCGCCTTCTGCTTATTCACCAAAACTTTCCAATCAATCAGAAGAAATTCCGATTGGATCTCTCCTTACCGGTCCGACCCGGGTACTTGCTACTATTCTATCTATATCCTTAACATTTTCGACCTTGATTGTCAAACTGGTTCAGAATGTTTGGCCGAGTTTGATTGCCCAATGTCTCGTAAATCCATGTACTGGGCTCGGTGCCTTCCAGCCGGCTGGCTCTTTGTTCTTCGCTGCACTAGTCGACCGCCCTGGCGGAAATCTCAACACGCCTTTGACGGTGGTGGCTGCGGGGTTGGCCAAGTGGCTGGATATTTACAGTGGGGTTCTGCTGGTTAGGGTTTTGCTGAGTTGGTTCCCCAATATCCCTTGGGACCGGCAGCCACTCTCTGCAATTCGTGATCTCTGTGATCCGTACTTGAACCTGTTCCGGAATATAATCCCTCCAATATTCGACACCCTGGATGTTAGCCCACTTTTGGCTTTTGCTGTTCTGGGCACACTAGGGGGATTTGAGTTTGCGAGACATGATTGTAAATTTTAG

Protein sequence

MASSLIASQALPLRRPVLPPKLHPSIAIYSHSFNRPLPSPLPLRFCTANSPNHGLRVLASSSPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCLVNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGGFEFARHDCKF

Homology

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BLAST of Cp4.1LG03g15050 vs. ExPASy Swiss-Prot
Match: Q9SUE0 (YlmG homolog protein 1-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG1-2 PE=2 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 8.0e-49
Identity = 125/229 (54.59%), Postives = 149/229 (65.07%), Query Frame = 0


Query: 8   SQALPLRRPVLP-PKLHPSIAIYSHSFNRP-LPSPLPLRFCTANSPNHGLRVLASSSPSA 67
           + +L LR  +L  P+L P I        RP L  P  L F   N   H  R + SS+ ++
Sbjct: 6   TNSLALRASILANPRLPPPII-------RPRLSLPRKLSF---NLSLHNARTIVSSAVTS 65

Query: 68  YSPKLSNQSEEIPIGSLLTGPTRVLAT-ILSISLTFSTLIVKL---VQNVWPSLIAQCLV 127
            SP LS++    P     +  TR + T +L   +   +LI KL   + N+ P + A    
Sbjct: 66  SSPVLSSKP---PSQFPFSDSTRSITTLVLLAGVVIKSLIQKLSVAIVNLSPQIQA---- 125

Query: 128 NPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFP 187
                  +F+ A  LFFA+L DRP G LNTPLTVVAAGL+KWLDIYSGVL+VRVLLSWFP
Sbjct: 126 -------SFRTASPLFFASLRDRPAGYLNTPLTVVAAGLSKWLDIYSGVLMVRVLLSWFP 185

Query: 188 NIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 231
           NIPWDRQPLSAIRDLCDPYLNLFRNIIPP+FDTLDVSPLLAFAVLGTLG
Sbjct: 186 NIPWDRQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLG 210

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BLAST of Cp4.1LG03g15050 vs. ExPASy Swiss-Prot
Match: Q9SRS3 (YlmG homolog protein 1-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG1-1 PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.1e-48
Identity = 121/234 (51.71%), Postives = 152/234 (64.96%), Query Frame = 0


Query: 5   LIASQALPLRRPVLPPKLHPSIAIYSHSFNRPLPSPL-----PLRFCTANSPNHGLRVLA 64
           + A  AL LR PV  P    S   +  + N+P P+ L     P    +  +P   +R+ A
Sbjct: 1   MAAITALTLRSPVYLPSSATSPRFHGFT-NQPPPARLFFPLNPFPSLSIQNPK-SIRISA 60

Query: 65  SSSPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQC 124
           S+SP   +P L  + +     S LTG TR LAT+ ++++  + ++ + +       +A  
Sbjct: 61  SASPIT-TPILQTE-KSTARSSTLTGSTRSLATLAALAIAVTRVLAQKLS------LAIQ 120

Query: 125 LVNPCTGLG---AFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVL 184
             +P    G   +   AG +FFA+L DRP G LNTPLTVVA G+ KWLDIYSGVL+VRVL
Sbjct: 121 TSSPVIADGLRFSLSTAGPVFFASLRDRPPGYLNTPLTVVAVGIKKWLDIYSGVLMVRVL 180

Query: 185 LSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 231
           LSWFPNIPW+RQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG
Sbjct: 181 LSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 224

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BLAST of Cp4.1LG03g15050 vs. ExPASy Swiss-Prot
Match: Q9C595 (YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG2 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.5e-12
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 155 VVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDT 214
           VVA GL  +L+IY+ +L+VR++L+WFP+ P     ++ +  LCDPYLN+FR  IPP+   
Sbjct: 133 VVANGLINFLNIYNTILVVRLVLTWFPSAP--PAIVNPLSTLCDPYLNIFRGFIPPL-GG 192

Query: 215 LDVSPLLAFAVL 227
           LD+SP+LAF VL
Sbjct: 193 LDLSPILAFLVL 201

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BLAST of Cp4.1LG03g15050 vs. ExPASy Swiss-Prot
Match: O78424 (Uncharacterized protein ycf19 OS=Guillardia theta OX=55529 GN=ycf19 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.8e-11
Identity = 31/78 (39.74%), Postives = 51/78 (65.38%), Query Frame = 0


Query: 149 LNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNII 208
           ++   T++ +    +L IY  +LL+RV L+WFPN+ W  QP  ++  + DPYL +FR I+
Sbjct: 1   MSNSFTLLFSSFIGFLQIYLILLLIRVSLTWFPNVNWYGQPFYSLSRITDPYLKMFRGIV 60

Query: 209 PPIFDTLDVSPLLAFAVL 227
           PP+   +D+SP+L F +L
Sbjct: 61  PPLIG-IDISPILGFILL 77

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BLAST of Cp4.1LG03g15050 vs. ExPASy Swiss-Prot
Match: P51353 (Uncharacterized protein ycf19 OS=Porphyra purpurea OX=2787 GN=ycf19 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.7e-09
Identity = 28/77 (36.36%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 153 LTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIF 212
           L ++   +A + +IY  ++L+++ L+WFP + W  +P  ++  + DPYL LFR  IPP+F
Sbjct: 8   LNLLLGSIANFSEIYLILILLKLSLAWFPTVNWYNEPFCSLNRITDPYLKLFRGSIPPMF 67

Query: 213 DTLDVSPLLAFAVLGTL 230
             +D+SP+L    L  L
Sbjct: 68  G-MDMSPMLGIIFLQCL 83

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BLAST of Cp4.1LG03g15050 vs. NCBI nr
Match: XP_023527027.1 (ylmG homolog protein 1-2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 456 bits (1172), Expect = 2.68e-161
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAIYSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           MASSLIASQALPLRRPVLPPKLHPSIAIYSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS
Sbjct: 1   MASSLIASQALPLRRPVLPPKLHPSIAIYSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60

Query: 61  SSPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120
           SSPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL
Sbjct: 61  SSPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120

Query: 121 VNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 180
           VNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF
Sbjct: 121 VNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 180

Query: 181 PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 230
           PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG
Sbjct: 181 PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 230

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BLAST of Cp4.1LG03g15050 vs. NCBI nr
Match: XP_022956231.1 (ylmG homolog protein 1-2, chloroplastic [Cucurbita moschata] >XP_022956232.1 ylmG homolog protein 1-2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 451 bits (1160), Expect = 1.81e-159
Identity = 228/230 (99.13%), Postives = 229/230 (99.57%), Query Frame = 0


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAIYSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           MASSLIASQALPLRRPVLPPKLHPSIAI SHSFNRPLPSPLPLRFCTANSPNHGLRVLAS
Sbjct: 1   MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60

Query: 61  SSPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120
           SSPSAYSPKLSNQSE+IPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL
Sbjct: 61  SSPSAYSPKLSNQSEDIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120

Query: 121 VNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 180
           VNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF
Sbjct: 121 VNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 180

Query: 181 PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 230
           PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG
Sbjct: 181 PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 230

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BLAST of Cp4.1LG03g15050 vs. NCBI nr
Match: KAG7018212.1 (YlmG-like protein 1-2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 447 bits (1149), Expect = 8.59e-158
Identity = 227/230 (98.70%), Postives = 227/230 (98.70%), Query Frame = 0


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAIYSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           MASSLIASQALPLRRPVLPPKLHPSIAI SHSFNRPLPSPLPLRFCTANSPNHGLRVLAS
Sbjct: 1   MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60

Query: 61  SSPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120
           SSPSAYSPKLSNQSEEI IGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL
Sbjct: 61  SSPSAYSPKLSNQSEEISIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120

Query: 121 VNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 180
           VNPCTGL AFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF
Sbjct: 121 VNPCTGLSAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 180

Query: 181 PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 230
           PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG
Sbjct: 181 PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 230

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BLAST of Cp4.1LG03g15050 vs. NCBI nr
Match: XP_022980718.1 (ylmG homolog protein 1-2, chloroplastic-like [Cucurbita maxima] >XP_022980719.1 ylmG homolog protein 1-2, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 446 bits (1146), Expect = 2.46e-157
Identity = 226/230 (98.26%), Postives = 226/230 (98.26%), Query Frame = 0


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAIYSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           MASSLIASQALPLRRPVLPPKLHPSIAI SHSFNR LPSPLPLRFCT NSPNHGLRVLAS
Sbjct: 1   MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRSLPSPLPLRFCTINSPNHGLRVLAS 60

Query: 61  SSPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120
           SSPSAYSPK SNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL
Sbjct: 61  SSPSAYSPKFSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120

Query: 121 VNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 180
           VNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF
Sbjct: 121 VNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 180

Query: 181 PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 230
           PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG
Sbjct: 181 PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 230

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BLAST of Cp4.1LG03g15050 vs. NCBI nr
Match: KAG6581763.1 (YlmG-like protein 1-2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 421 bits (1083), Expect = 1.22e-147
Identity = 213/216 (98.61%), Postives = 213/216 (98.61%), Query Frame = 0


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAIYSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           MASSLIASQALPLRRPVLPPKLHPSIAI SHSFNRPLPSPLPLRFCTANSPNHGLRVLAS
Sbjct: 1   MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60

Query: 61  SSPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120
           SSPSAYSPKLSNQSEEI IGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL
Sbjct: 61  SSPSAYSPKLSNQSEEISIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120

Query: 121 VNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 180
           VNPCTGL AFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF
Sbjct: 121 VNPCTGLSAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 180

Query: 181 PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLD 216
           PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLD
Sbjct: 181 PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLD 216

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BLAST of Cp4.1LG03g15050 vs. ExPASy TrEMBL
Match: A0A6J1GVR7 (ylmG homolog protein 1-2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111457989 PE=4 SV=1)

HSP 1 Score: 451 bits (1160), Expect = 8.75e-160
Identity = 228/230 (99.13%), Postives = 229/230 (99.57%), Query Frame = 0


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAIYSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           MASSLIASQALPLRRPVLPPKLHPSIAI SHSFNRPLPSPLPLRFCTANSPNHGLRVLAS
Sbjct: 1   MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60

Query: 61  SSPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120
           SSPSAYSPKLSNQSE+IPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL
Sbjct: 61  SSPSAYSPKLSNQSEDIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120

Query: 121 VNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 180
           VNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF
Sbjct: 121 VNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 180

Query: 181 PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 230
           PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG
Sbjct: 181 PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 230

[Close]

BLAST of Cp4.1LG03g15050 vs. ExPASy TrEMBL
Match: A0A6J1J015 (ylmG homolog protein 1-2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480002 PE=4 SV=1)

HSP 1 Score: 446 bits (1146), Expect = 1.19e-157
Identity = 226/230 (98.26%), Postives = 226/230 (98.26%), Query Frame = 0


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAIYSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           MASSLIASQALPLRRPVLPPKLHPSIAI SHSFNR LPSPLPLRFCT NSPNHGLRVLAS
Sbjct: 1   MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRSLPSPLPLRFCTINSPNHGLRVLAS 60

Query: 61  SSPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120
           SSPSAYSPK SNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL
Sbjct: 61  SSPSAYSPKFSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120

Query: 121 VNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 180
           VNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF
Sbjct: 121 VNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 180

Query: 181 PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 230
           PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG
Sbjct: 181 PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 230

[Close]

BLAST of Cp4.1LG03g15050 vs. ExPASy TrEMBL
Match: A0A5D3C9Z4 (YlmG-like protein 1-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00210 PE=4 SV=1)

HSP 1 Score: 342 bits (877), Expect = 9.20e-117
Identity = 179/231 (77.49%), Postives = 195/231 (84.42%), Query Frame = 0


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAIYSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           MASSLIASQ+LPLRRP+LPP L            RP PSPL L   T  SPN GLRVLAS
Sbjct: 1   MASSLIASQSLPLRRPLLPPNLR-----------RPPPSPLLLPLSTVKSPNLGLRVLAS 60

Query: 61  SSPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120
           SS S+YSPKLS QS+EIPI  LLTGPTR+LAT+LS+SL FST+IVKLVQNVWP LI QCL
Sbjct: 61  SSLSSYSPKLSRQSQEIPISPLLTGPTRILATLLSVSLAFSTVIVKLVQNVWPILIPQCL 120

Query: 121 VN-PCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSW 180
           +N PC+GLGA QPAGSLFFA+L +   G LNTPLTVVA GLAKWLDIYSG+L+VRVLLSW
Sbjct: 121 INNPCSGLGALQPAGSLFFASLRNPSVGGLNTPLTVVAVGLAKWLDIYSGILMVRVLLSW 180

Query: 181 FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 230
           FPNIPW+RQPLSAIRDLCDPYLNLFRNIIPP+FDTLDVSPLLAFAVLGTLG
Sbjct: 181 FPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLG 220

[Close]

BLAST of Cp4.1LG03g15050 vs. ExPASy TrEMBL
Match: A0A1S3CC91 (ylmG homolog protein 1-2, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103499156 PE=4 SV=1)

HSP 1 Score: 340 bits (871), Expect = 7.53e-116
Identity = 178/231 (77.06%), Postives = 194/231 (83.98%), Query Frame = 0


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAIYSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           MASSLIASQ+LPLRRP+LPP L            RP PSPL L   T  SPN GLRVLAS
Sbjct: 1   MASSLIASQSLPLRRPLLPPNLR-----------RPPPSPLLLPLSTVKSPNLGLRVLAS 60

Query: 61  SSPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120
           SS S+YSPKLS Q +EIPI  LLTGPTR+LAT+LS+SL FST+IVKLVQNVWP LI QCL
Sbjct: 61  SSLSSYSPKLSRQLQEIPISPLLTGPTRILATLLSVSLAFSTVIVKLVQNVWPILIPQCL 120

Query: 121 VN-PCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSW 180
           +N PC+GLGA QPAGSLFFA+L +   G LNTPLTVVA GLAKWLDIYSG+L+VRVLLSW
Sbjct: 121 INNPCSGLGALQPAGSLFFASLRNPSVGGLNTPLTVVAVGLAKWLDIYSGILMVRVLLSW 180

Query: 181 FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 230
           FPNIPW+RQPLSAIRDLCDPYLNLFRNIIPP+FDTLDVSPLLAFAVLGTLG
Sbjct: 181 FPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLG 220

[Close]

BLAST of Cp4.1LG03g15050 vs. ExPASy TrEMBL
Match: A0A5A7VBM7 (YlmG-like protein 1-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold90G00220 PE=4 SV=1)

HSP 1 Score: 340 bits (871), Expect = 7.53e-116
Identity = 178/231 (77.06%), Postives = 194/231 (83.98%), Query Frame = 0


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAIYSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           MASSLIASQ+LPLRRP+LPP L            RP PSPL L   T  SPN GLRVLAS
Sbjct: 1   MASSLIASQSLPLRRPLLPPNLR-----------RPPPSPLLLPLSTVKSPNLGLRVLAS 60

Query: 61  SSPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120
           SS S+YSPKLS Q +EIPI  LLTGPTR+LAT+LS+SL FST+IVKLVQNVWP LI QCL
Sbjct: 61  SSLSSYSPKLSRQLQEIPISPLLTGPTRILATLLSVSLAFSTVIVKLVQNVWPILIPQCL 120

Query: 121 VN-PCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSW 180
           +N PC+GLGA QPAGSLFFA+L +   G LNTPLTVVA GLAKWLDIYSG+L+VRVLLSW
Sbjct: 121 INNPCSGLGALQPAGSLFFASLRNPSVGGLNTPLTVVAVGLAKWLDIYSGILMVRVLLSW 180

Query: 181 FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 230
           FPNIPW+RQPLSAIRDLCDPYLNLFRNIIPP+FDTLDVSPLLAFAVLGTLG
Sbjct: 181 FPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLG 220

[Close]

BLAST of Cp4.1LG03g15050 vs. TAIR 10
Match: AT4G27990.1 (YGGT family protein )

HSP 1 Score: 195.3 bits (495), Expect = 5.7e-50
Identity = 125/229 (54.59%), Postives = 149/229 (65.07%), Query Frame = 0


Query: 8   SQALPLRRPVLP-PKLHPSIAIYSHSFNRP-LPSPLPLRFCTANSPNHGLRVLASSSPSA 67
           + +L LR  +L  P+L P I        RP L  P  L F   N   H  R + SS+ ++
Sbjct: 6   TNSLALRASILANPRLPPPII-------RPRLSLPRKLSF---NLSLHNARTIVSSAVTS 65

Query: 68  YSPKLSNQSEEIPIGSLLTGPTRVLAT-ILSISLTFSTLIVKL---VQNVWPSLIAQCLV 127
            SP LS++    P     +  TR + T +L   +   +LI KL   + N+ P + A    
Sbjct: 66  SSPVLSSKP---PSQFPFSDSTRSITTLVLLAGVVIKSLIQKLSVAIVNLSPQIQA---- 125

Query: 128 NPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFP 187
                  +F+ A  LFFA+L DRP G LNTPLTVVAAGL+KWLDIYSGVL+VRVLLSWFP
Sbjct: 126 -------SFRTASPLFFASLRDRPAGYLNTPLTVVAAGLSKWLDIYSGVLMVRVLLSWFP 185

Query: 188 NIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 231
           NIPWDRQPLSAIRDLCDPYLNLFRNIIPP+FDTLDVSPLLAFAVLGTLG
Sbjct: 186 NIPWDRQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLG 210

[Close]

BLAST of Cp4.1LG03g15050 vs. TAIR 10
Match: AT3G07430.1 (YGGT family protein )

HSP 1 Score: 194.9 bits (494), Expect = 7.5e-50
Identity = 121/234 (51.71%), Postives = 152/234 (64.96%), Query Frame = 0


Query: 5   LIASQALPLRRPVLPPKLHPSIAIYSHSFNRPLPSPL-----PLRFCTANSPNHGLRVLA 64
           + A  AL LR PV  P    S   +  + N+P P+ L     P    +  +P   +R+ A
Sbjct: 1   MAAITALTLRSPVYLPSSATSPRFHGFT-NQPPPARLFFPLNPFPSLSIQNPK-SIRISA 60

Query: 65  SSSPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQC 124
           S+SP   +P L  + +     S LTG TR LAT+ ++++  + ++ + +       +A  
Sbjct: 61  SASPIT-TPILQTE-KSTARSSTLTGSTRSLATLAALAIAVTRVLAQKLS------LAIQ 120

Query: 125 LVNPCTGLG---AFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVL 184
             +P    G   +   AG +FFA+L DRP G LNTPLTVVA G+ KWLDIYSGVL+VRVL
Sbjct: 121 TSSPVIADGLRFSLSTAGPVFFASLRDRPPGYLNTPLTVVAVGIKKWLDIYSGVLMVRVL 180

Query: 185 LSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 231
           LSWFPNIPW+RQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG
Sbjct: 181 LSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 224

[Close]

BLAST of Cp4.1LG03g15050 vs. TAIR 10
Match: AT5G21920.1 (YGGT family protein )

HSP 1 Score: 73.6 bits (179), Expect = 2.5e-13
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 155 VVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDT 214
           VVA GL  +L+IY+ +L+VR++L+WFP+ P     ++ +  LCDPYLN+FR  IPP+   
Sbjct: 133 VVANGLINFLNIYNTILVVRLVLTWFPSAP--PAIVNPLSTLCDPYLNIFRGFIPPL-GG 192

Query: 215 LDVSPLLAFAVL 227
           LD+SP+LAF VL
Sbjct: 193 LDLSPILAFLVL 201

[Close]

BLAST of Cp4.1LG03g15050 vs. TAIR 10
Match: AT5G21920.2 (YGGT family protein )

HSP 1 Score: 73.6 bits (179), Expect = 2.5e-13
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 155 VVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDT 214
           VVA GL  +L+IY+ +L+VR++L+WFP+ P     ++ +  LCDPYLN+FR  IPP+   
Sbjct: 120 VVANGLINFLNIYNTILVVRLVLTWFPSAP--PAIVNPLSTLCDPYLNIFRGFIPPL-GG 179

Query: 215 LDVSPLLAFAVL 227
           LD+SP+LAF VL
Sbjct: 180 LDLSPILAFLVL 188

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g15050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SUE0	8.0e-49	54.59	YlmG homolog protein 1-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG1...	[more]
Q9SRS3	1.1e-48	51.71	YlmG homolog protein 1-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG1...	[more]
Q9C595	3.5e-12	51.39	YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG2 P...	[more]
O78424	1.8e-11	39.74	Uncharacterized protein ycf19 OS=Guillardia theta OX=55529 GN=ycf19 PE=3 SV=1	[more]
P51353	3.7e-09	36.36	Uncharacterized protein ycf19 OS=Porphyra purpurea OX=2787 GN=ycf19 PE=3 SV=1	[more]

BLAST of Cp4.1LG03g15050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023527027.1	2.68e-161	100.00	ylmG homolog protein 1-2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022956231.1	1.81e-159	99.13	ylmG homolog protein 1-2, chloroplastic [Cucurbita moschata] >XP_022956232.1 ylm...	[more]
KAG7018212.1	8.59e-158	98.70	YlmG-like protein 1-2, chloroplastic, partial [Cucurbita argyrosperma subsp. arg...	[more]
XP_022980718.1	2.46e-157	98.26	ylmG homolog protein 1-2, chloroplastic-like [Cucurbita maxima] >XP_022980719.1 ...	[more]
KAG6581763.1	1.22e-147	98.61	YlmG-like protein 1-2, chloroplastic, partial [Cucurbita argyrosperma subsp. sor...	[more]

BLAST of Cp4.1LG03g15050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GVR7	8.75e-160	99.13	ylmG homolog protein 1-2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1J015	1.19e-157	98.26	ylmG homolog protein 1-2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A5D3C9Z4	9.20e-117	77.49	YlmG-like protein 1-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold60...	[more]
A0A1S3CC91	7.53e-116	77.06	ylmG homolog protein 1-2, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A5A7VBM7	7.53e-116	77.06	YlmG-like protein 1-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold90...	[more]

BLAST of Cp4.1LG03g15050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27990.1	5.7e-50	54.59	YGGT family protein	[more]
AT3G07430.1	7.5e-50	51.71	YGGT family protein	[more]
AT5G21920.1	2.5e-13	51.39	YGGT family protein	[more]
AT5G21920.2	2.5e-13	51.39	YGGT family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003425	CCB3/YggT	PFAM	PF02325	YGGT	coord: 164..229 e-value: 3.3E-16 score: 59.4
IPR003425	CCB3/YggT	PANTHER	PTHR33219	YLMG HOMOLOG PROTEIN 2, CHLOROPLASTIC	coord: 52..230
None	No IPR available	PANTHER	PTHR33219:SF10	YLMG HOMOLOG PROTEIN 1-2, CHLOROPLASTIC	coord: 52..230

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g15050.1	Cp4.1LG03g15050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010020	chloroplast fission
biological_process	GO:0090143	nucleoid organization
cellular_component	GO:0016020	membrane