Cp4.1LG03g13190 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g13190
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RING finger protein, putative
Location	Cp4.1LG03: 9699263 .. 9699946 (-)
RNA-Seq Expression	Cp4.1LG03g13190
Synteny	Cp4.1LG03g13190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCCCTCTATTCCACCGGATATGACAATGGTCGCTGCCCTAAACCACCTCTCCAAACACCCTCCTTGCGGCGGCCCAGGCGGCGGCGACCACCTCATGAATGGTGGCCCTCCAATTTCTGATCAATATTCTTCCTCTTCTTGCATACGATCTAATCCTCCCATGGCGGATGATGATGAGTCCTCACCTAATTCTCTTCATCATCAATCCCCTTCCAATACTGATCATGATGCTTGGCTTCAATTAAGCATCGGCCGTGTCGGCGTCGTCGGTGGAGACCAATATGTGATACCTCGAACCACCTCCCCTTTGGTCGAGCTAGATCTATTACCCGGTGGCCATCACCCTCGAGATATTCCAACCGATCCTACGTGGGTTTTGGATATCTCGAGCCCTGAGGCTGTAATTACATCCAAAACCGAGACGGAGACGGAGACGGAGACAGGAATAGGGATGCCGATGCCTTTGTGTTCTTCTTTCAATTTGACTGATATCAACGTAGCTCAAACGTACCCGTCGACATCGACCATGTTATCTTCTTCTTCTTTTCACTCGAGCATACCATCTATCAGGGTCGACACCACGGCGGCCGGGCCAAGCTCCGATATCAGAATCATAAACCCTCCCCGGCGACCCGGTTCGGGTATTTGGTTTACATTAAAAGCCTTGGAAAATCAGTAA

mRNA sequence

ATGCCTCCCTCTATTCCACCGGATATGACAATGGTCGCTGCCCTAAACCACCTCTCCAAACACCCTCCTTGCGGCGGCCCAGGCGGCGGCGACCACCTCATGAATGGTGGCCCTCCAATTTCTGATCAATATTCTTCCTCTTCTTGCATACGATCTAATCCTCCCATGGCGGATGATGATGAGTCCTCACCTAATTCTCTTCATCATCAATCCCCTTCCAATACTGATCATGATGCTTGGCTTCAATTAAGCATCGGCCGTGTCGGCGTCGTCGGTGGAGACCAATATGTGATACCTCGAACCACCTCCCCTTTGGTCGAGCTAGATCTATTACCCGGTGGCCATCACCCTCGAGATATTCCAACCGATCCTACGTGGGTTTTGGATATCTCGAGCCCTGAGGCTGTAATTACATCCAAAACCGAGACGGAGACGGAGACGGAGACAGGAATAGGGATGCCGATGCCTTTGTGTTCTTCTTTCAATTTGACTGATATCAACGTAGCTCAAACGTACCCGTCGACATCGACCATGTTATCTTCTTCTTCTTTTCACTCGAGCATACCATCTATCAGGGTCGACACCACGGCGGCCGGGCCAAGCTCCGATATCAGAATCATAAACCCTCCCCGGCGACCCGGTTCGGGTATTTGGTTTACATTAAAAGCCTTGGAAAATCAGTAA

Coding sequence (CDS)

ATGCCTCCCTCTATTCCACCGGATATGACAATGGTCGCTGCCCTAAACCACCTCTCCAAACACCCTCCTTGCGGCGGCCCAGGCGGCGGCGACCACCTCATGAATGGTGGCCCTCCAATTTCTGATCAATATTCTTCCTCTTCTTGCATACGATCTAATCCTCCCATGGCGGATGATGATGAGTCCTCACCTAATTCTCTTCATCATCAATCCCCTTCCAATACTGATCATGATGCTTGGCTTCAATTAAGCATCGGCCGTGTCGGCGTCGTCGGTGGAGACCAATATGTGATACCTCGAACCACCTCCCCTTTGGTCGAGCTAGATCTATTACCCGGTGGCCATCACCCTCGAGATATTCCAACCGATCCTACGTGGGTTTTGGATATCTCGAGCCCTGAGGCTGTAATTACATCCAAAACCGAGACGGAGACGGAGACGGAGACAGGAATAGGGATGCCGATGCCTTTGTGTTCTTCTTTCAATTTGACTGATATCAACGTAGCTCAAACGTACCCGTCGACATCGACCATGTTATCTTCTTCTTCTTTTCACTCGAGCATACCATCTATCAGGGTCGACACCACGGCGGCCGGGCCAAGCTCCGATATCAGAATCATAAACCCTCCCCGGCGACCCGGTTCGGGTATTTGGTTTACATTAAAAGCCTTGGAAAATCAGTAA

Protein sequence

MPPSIPPDMTMVAALNHLSKHPPCGGPGGGDHLMNGGPPISDQYSSSSCIRSNPPMADDDESSPNSLHHQSPSNTDHDAWLQLSIGRVGVVGGDQYVIPRTTSPLVELDLLPGGHHPRDIPTDPTWVLDISSPEAVITSKTETETETETGIGMPMPLCSSFNLTDINVAQTYPSTSTMLSSSSFHSSIPSIRVDTTAAGPSSDIRIINPPRRPGSGIWFTLKALENQ

Homology

[Close]

BLAST of Cp4.1LG03g13190 vs. NCBI nr
Match: XP_023527520.1 (uncharacterized protein LOC111790726 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 458 bits (1178), Expect = 4.27e-161
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0


Query: 1   MPPSIPPDMTMVAALNHLSKHPPCGGPGGGDHLMNGGPPISDQYSSSSCIRSNPPMADDD 60
           MPPSIPPDMTMVAALNHLSKHPPCGGPGGGDHLMNGGPPISDQYSSSSCIRSNPPMADDD
Sbjct: 1   MPPSIPPDMTMVAALNHLSKHPPCGGPGGGDHLMNGGPPISDQYSSSSCIRSNPPMADDD 60

Query: 61  ESSPNSLHHQSPSNTDHDAWLQLSIGRVGVVGGDQYVIPRTTSPLVELDLLPGGHHPRDI 120
           ESSPNSLHHQSPSNTDHDAWLQLSIGRVGVVGGDQYVIPRTTSPLVELDLLPGGHHPRDI
Sbjct: 61  ESSPNSLHHQSPSNTDHDAWLQLSIGRVGVVGGDQYVIPRTTSPLVELDLLPGGHHPRDI 120

Query: 121 PTDPTWVLDISSPEAVITSKTETETETETGIGMPMPLCSSFNLTDINVAQTYPSTSTMLS 180
           PTDPTWVLDISSPEAVITSKTETETETETGIGMPMPLCSSFNLTDINVAQTYPSTSTMLS
Sbjct: 121 PTDPTWVLDISSPEAVITSKTETETETETGIGMPMPLCSSFNLTDINVAQTYPSTSTMLS 180

Query: 181 SSSFHSSIPSIRVDTTAAGPSSDIRIINPPRRPGSGIWFTLKALENQ 227
           SSSFHSSIPSIRVDTTAAGPSSDIRIINPPRRPGSGIWFTLKALENQ
Sbjct: 181 SSSFHSSIPSIRVDTTAAGPSSDIRIINPPRRPGSGIWFTLKALENQ 227

[Close]

BLAST of Cp4.1LG03g13190 vs. NCBI nr
Match: KAG7018408.1 (hypothetical protein SDJN02_20276, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 418 bits (1075), Expect = 1.07e-146
Identity = 213/227 (93.83%), Postives = 215/227 (94.71%), Query Frame = 0


Query: 1   MPPSIPPDMTMVAALNHLSKHPPCGGPGGGDHLMNGGPPISDQYSSSSCIRSNPPMADDD 60
           MPPSIPPDMTMVAALNHLSKHPPCGGPGGGDHLMN GPPI DQYSSSSCI SNPPMADDD
Sbjct: 1   MPPSIPPDMTMVAALNHLSKHPPCGGPGGGDHLMNAGPPICDQYSSSSCIGSNPPMADDD 60

Query: 61  ESSPNSLHHQSPSNTDHDAWLQLSIGRVGVVGGDQYVIPRTTSPLVELDLLPGGHHPRDI 120
           +SSPNSLHHQSPSNTDHDAWLQLSIGRVGV GGDQY IPRTTSPLVELDLLPGGHHPRDI
Sbjct: 61  DSSPNSLHHQSPSNTDHDAWLQLSIGRVGV-GGDQYEIPRTTSPLVELDLLPGGHHPRDI 120

Query: 121 PTDPTWVLDISSPEAVITSKTETETETETGIGMPMPLCSSFNLTDINVAQTYPSTSTMLS 180
           PTDPTWVLDISSPEAVITSKTETETET    G+ MPLCSSFNLTDINVAQTYPSTSTMLS
Sbjct: 121 PTDPTWVLDISSPEAVITSKTETETET----GIRMPLCSSFNLTDINVAQTYPSTSTMLS 180

Query: 181 SSSFHSSIPSIRVDTTAAGPSSDIRIINPPRRPGSGIWFTLKALENQ 227
           SSSFHSSIPSIRVD TAAG SSDIRIINPPRRPGSGIWFTLKALENQ
Sbjct: 181 SSSFHSSIPSIRVDATAAGTSSDIRIINPPRRPGSGIWFTLKALENQ 222

[Close]

BLAST of Cp4.1LG03g13190 vs. NCBI nr
Match: KAG6581987.1 (hypothetical protein SDJN03_21989, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 411 bits (1056), Expect = 6.33e-144
Identity = 212/228 (92.98%), Postives = 214/228 (93.86%), Query Frame = 0


Query: 1   MPPSIPPDMTMVAALNHLSKHPPCGGPGGGDHLMNGGPPISDQYSSSSCIRSNPPMADDD 60
           MPPSIPPDMTMVAALNHLSKHPPCGGPGGGDHLMN GPPI DQYSSSSCI SNPPMADDD
Sbjct: 1   MPPSIPPDMTMVAALNHLSKHPPCGGPGGGDHLMNAGPPICDQYSSSSCIGSNPPMADDD 60

Query: 61  ESSPNSLHHQSPSNTDHDAWLQLSIGRVGVVGGDQYVIPRTTSPLVELDLLPGGHHPRDI 120
           +SSPNSLHHQSPSNTDHDAWLQLSIGRVGV GGDQY IPRTTSPLVELDLLPGGHHPRDI
Sbjct: 61  DSSPNSLHHQSPSNTDHDAWLQLSIGRVGV-GGDQYEIPRTTSPLVELDLLPGGHHPRDI 120

Query: 121 PTDPTWVLDISSPEAVITSKTETETETETGIGMPMPLCSSFNLTDINVAQTYPSTSTMLS 180
           PTDPTWVLDISSPEAVITSKTETETET    G+ MPLCSSFNLTDINVAQTYPSTSTMLS
Sbjct: 121 PTDPTWVLDISSPEAVITSKTETETET----GIRMPLCSSFNLTDINVAQTYPSTSTMLS 180

Query: 181 SSS-FHSSIPSIRVDTTAAGPSSDIRIINPPRRPGSGIWFTLKALENQ 227
           SSS FHSSIPSIRVD TAAG SS IRIINPPRRPGSGIWFTLKALENQ
Sbjct: 181 SSSSFHSSIPSIRVDATAAGTSSGIRIINPPRRPGSGIWFTLKALENQ 223

[Close]

BLAST of Cp4.1LG03g13190 vs. NCBI nr
Match: XP_022955779.1 (uncharacterized protein LOC111457668 isoform X1 [Cucurbita moschata])

HSP 1 Score: 409 bits (1052), Expect = 5.49e-142
Identity = 209/227 (92.07%), Postives = 212/227 (93.39%), Query Frame = 0


Query: 1   MPPSIPPDMTMVAALNHLSKHPPCGGPGGGDHLMNGGPPISDQYSSSSCIRSNPPMADDD 60
           MPPSIPPDMTMVAALNHLSKHPPCGGPGGGDHLMNGGPPI DQYSSSSCI SNPPMADDD
Sbjct: 1   MPPSIPPDMTMVAALNHLSKHPPCGGPGGGDHLMNGGPPICDQYSSSSCIGSNPPMADDD 60

Query: 61  ESSPNSLHHQSPSNTDHDAWLQLSIGRVGVVGGDQYVIPRTTSPLVELDLLPGGHHPRDI 120
           +SSPNSLHHQSPSNTDHDAWLQLSIGRVGV GGDQY IPRTTSPLVELDLLPG HHPRDI
Sbjct: 61  DSSPNSLHHQSPSNTDHDAWLQLSIGRVGV-GGDQYEIPRTTSPLVELDLLPGSHHPRDI 120

Query: 121 PTDPTWVLDISSPEAVITSKTETETETETGIGMPMPLCSSFNLTDINVAQTYPSTSTMLS 180
           PTDPTWV +ISSPEAVITSKTETE ET    G+ MPLCSSFNLTDINVAQTYPSTSTMLS
Sbjct: 121 PTDPTWVSNISSPEAVITSKTETEIET----GIRMPLCSSFNLTDINVAQTYPSTSTMLS 180

Query: 181 SSSFHSSIPSIRVDTTAAGPSSDIRIINPPRRPGSGIWFTLKALENQ 227
           SSSFHSSIPSIRVD  AAG SSDIRIINPPRRPGSGIWFTLKALENQ
Sbjct: 181 SSSFHSSIPSIRVDAMAAGTSSDIRIINPPRRPGSGIWFTLKALENQ 222

[Close]

BLAST of Cp4.1LG03g13190 vs. NCBI nr
Match: XP_022955780.1 (uncharacterized protein LOC111457668 isoform X2 [Cucurbita moschata])

HSP 1 Score: 364 bits (934), Expect = 2.65e-124
Identity = 194/227 (85.46%), Postives = 196/227 (86.34%), Query Frame = 0


Query: 1   MPPSIPPDMTMVAALNHLSKHPPCGGPGGGDHLMNGGPPISDQYSSSSCIRSNPPMADDD 60
           MPPSIPPDMTMVAALNHLSKHPPCGGPGGGDHLMNGGPPI DQYSSSSCI SNPPMADDD
Sbjct: 1   MPPSIPPDMTMVAALNHLSKHPPCGGPGGGDHLMNGGPPICDQYSSSSCIGSNPPMADDD 60

Query: 61  ESSPNSLHHQSPSNTDHDAWLQLSIGRVGVVGGDQYVIPRTTSPLVELDLLPGGHHPRDI 120
           +SSPNSLHHQSPSNTDHDAWLQLSIGRVGV GGDQY IPRTTSPLVELDLLPG       
Sbjct: 61  DSSPNSLHHQSPSNTDHDAWLQLSIGRVGV-GGDQYEIPRTTSPLVELDLLPG------- 120

Query: 121 PTDPTWVLDISSPEAVITSKTETETETETGIGMPMPLCSSFNLTDINVAQTYPSTSTMLS 180
                      SPEAVITSKTETE ET    G+ MPLCSSFNLTDINVAQTYPSTSTMLS
Sbjct: 121 -----------SPEAVITSKTETEIET----GIRMPLCSSFNLTDINVAQTYPSTSTMLS 180

Query: 181 SSSFHSSIPSIRVDTTAAGPSSDIRIINPPRRPGSGIWFTLKALENQ 227
           SSSFHSSIPSIRVD  AAG SSDIRIINPPRRPGSGIWFTLKALENQ
Sbjct: 181 SSSFHSSIPSIRVDAMAAGTSSDIRIINPPRRPGSGIWFTLKALENQ 204

[Close]

BLAST of Cp4.1LG03g13190 vs. ExPASy TrEMBL
Match: A0A6J1GX93 (uncharacterized protein LOC111457668 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457668 PE=4 SV=1)

HSP 1 Score: 409 bits (1052), Expect = 2.66e-142
Identity = 209/227 (92.07%), Postives = 212/227 (93.39%), Query Frame = 0


Query: 1   MPPSIPPDMTMVAALNHLSKHPPCGGPGGGDHLMNGGPPISDQYSSSSCIRSNPPMADDD 60
           MPPSIPPDMTMVAALNHLSKHPPCGGPGGGDHLMNGGPPI DQYSSSSCI SNPPMADDD
Sbjct: 1   MPPSIPPDMTMVAALNHLSKHPPCGGPGGGDHLMNGGPPICDQYSSSSCIGSNPPMADDD 60

Query: 61  ESSPNSLHHQSPSNTDHDAWLQLSIGRVGVVGGDQYVIPRTTSPLVELDLLPGGHHPRDI 120
           +SSPNSLHHQSPSNTDHDAWLQLSIGRVGV GGDQY IPRTTSPLVELDLLPG HHPRDI
Sbjct: 61  DSSPNSLHHQSPSNTDHDAWLQLSIGRVGV-GGDQYEIPRTTSPLVELDLLPGSHHPRDI 120

Query: 121 PTDPTWVLDISSPEAVITSKTETETETETGIGMPMPLCSSFNLTDINVAQTYPSTSTMLS 180
           PTDPTWV +ISSPEAVITSKTETE ET    G+ MPLCSSFNLTDINVAQTYPSTSTMLS
Sbjct: 121 PTDPTWVSNISSPEAVITSKTETEIET----GIRMPLCSSFNLTDINVAQTYPSTSTMLS 180

Query: 181 SSSFHSSIPSIRVDTTAAGPSSDIRIINPPRRPGSGIWFTLKALENQ 227
           SSSFHSSIPSIRVD  AAG SSDIRIINPPRRPGSGIWFTLKALENQ
Sbjct: 181 SSSFHSSIPSIRVDAMAAGTSSDIRIINPPRRPGSGIWFTLKALENQ 222

[Close]

BLAST of Cp4.1LG03g13190 vs. ExPASy TrEMBL
Match: A0A6J1GW07 (uncharacterized protein LOC111457668 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457668 PE=4 SV=1)

HSP 1 Score: 364 bits (934), Expect = 1.29e-124
Identity = 194/227 (85.46%), Postives = 196/227 (86.34%), Query Frame = 0


Query: 1   MPPSIPPDMTMVAALNHLSKHPPCGGPGGGDHLMNGGPPISDQYSSSSCIRSNPPMADDD 60
           MPPSIPPDMTMVAALNHLSKHPPCGGPGGGDHLMNGGPPI DQYSSSSCI SNPPMADDD
Sbjct: 1   MPPSIPPDMTMVAALNHLSKHPPCGGPGGGDHLMNGGPPICDQYSSSSCIGSNPPMADDD 60

Query: 61  ESSPNSLHHQSPSNTDHDAWLQLSIGRVGVVGGDQYVIPRTTSPLVELDLLPGGHHPRDI 120
           +SSPNSLHHQSPSNTDHDAWLQLSIGRVGV GGDQY IPRTTSPLVELDLLPG       
Sbjct: 61  DSSPNSLHHQSPSNTDHDAWLQLSIGRVGV-GGDQYEIPRTTSPLVELDLLPG------- 120

Query: 121 PTDPTWVLDISSPEAVITSKTETETETETGIGMPMPLCSSFNLTDINVAQTYPSTSTMLS 180
                      SPEAVITSKTETE ET    G+ MPLCSSFNLTDINVAQTYPSTSTMLS
Sbjct: 121 -----------SPEAVITSKTETEIET----GIRMPLCSSFNLTDINVAQTYPSTSTMLS 180

Query: 181 SSSFHSSIPSIRVDTTAAGPSSDIRIINPPRRPGSGIWFTLKALENQ 227
           SSSFHSSIPSIRVD  AAG SSDIRIINPPRRPGSGIWFTLKALENQ
Sbjct: 181 SSSFHSSIPSIRVDAMAAGTSSDIRIINPPRRPGSGIWFTLKALENQ 204

[Close]

BLAST of Cp4.1LG03g13190 vs. ExPASy TrEMBL
Match: A0A6J1INX5 (uncharacterized protein LOC111479202 OS=Cucurbita maxima OX=3661 GN=LOC111479202 PE=4 SV=1)

HSP 1 Score: 342 bits (878), Expect = 4.37e-116
Identity = 190/228 (83.33%), Postives = 191/228 (83.77%), Query Frame = 0


Query: 1   MPPSIPPDMTMVAALNHLSKHPPCGGPGGGDHLMNGGPPISDQYSSSSCIRSNPPMADDD 60
           MPPSIPPDMTMVAALNHLSKH  CGG GGG HLMNGGPPI DQYSSSSCI S+PPMADDD
Sbjct: 1   MPPSIPPDMTMVAALNHLSKHHLCGGGGGGHHLMNGGPPICDQYSSSSCIGSDPPMADDD 60

Query: 61  ESSPNSLHHQSPSNTD-HDAWLQLSIGRVGVVGGDQYVIPRTTSPLVELDLLPGGHHPRD 120
           ESSPNSLHHQSPSNTD HDAWLQLSIGRVGV GGDQY IPRTTSPLVELDLLPGG     
Sbjct: 61  ESSPNSLHHQSPSNTDDHDAWLQLSIGRVGV-GGDQYEIPRTTSPLVELDLLPGG----- 120

Query: 121 IPTDPTWVLDISSPEAVITSKTETETETETGIGMPMPLCSSFNLTDINVAQTYPSTSTML 180
                        PEAVITSKTET TET  GIGMP   CSSFNLTDINVAQTYPSTSTML
Sbjct: 121 -------------PEAVITSKTETRTET--GIGMPS--CSSFNLTDINVAQTYPSTSTML 180

Query: 181 SSSSFHSSIPSIRVDTTAAGPSSDIRIINPPRRPGSGIWFTLKALENQ 227
           SSSSFHSSIPSI VD TAAG SSDIRIINPPRRP SGIWFTLKALENQ
Sbjct: 181 SSSSFHSSIPSIAVDATAAGTSSDIRIINPPRRPSSGIWFTLKALENQ 205

[Close]

BLAST of Cp4.1LG03g13190 vs. ExPASy TrEMBL
Match: A0A5A7TLY8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G002530 PE=4 SV=1)

HSP 1 Score: 167 bits (423), Expect = 9.85e-48
Identity = 133/270 (49.26%), Postives = 154/270 (57.04%), Query Frame = 0


Query: 9   MTMVAALNHLSKHPPCGGPGGGDHLMNGGPPISDQY---------SSSSCIRSNPPMADD 68
           MTMVAALNH SKH      GG DHLMNGG P+ +QY         S+   I  +PPMA+D
Sbjct: 1   MTMVAALNHFSKHQH----GGADHLMNGGAPLCNQYYYYYNYLGSSNPYLISLDPPMAED 60

Query: 69  DESSPNSLHH-QSPSNTDHDAWLQLSIGRVGVVGG------DQY--VIPRTTSPLVELDL 128
           D S+ NSL+H Q+PSNTD D WLQLSIG  G  G       DQ   + P  +S LVELDL
Sbjct: 61  D-STTNSLNHDQAPSNTD-DGWLQLSIGGSGGSGNVTGLKHDQRESMTPGRSSGLVELDL 120

Query: 129 LPGGHHPRDIPTDPT-WVLDISSPEAVITSKTETETETETGIGMPM----PLCSSFNLTD 188
           LPGG   RDI  + + WV D SSPE   TSKTET  E   GIG+P+       S+F   +
Sbjct: 121 LPGGG--RDISMNYSRWVSDFSSPETTTTSKTETGAEI--GIGLPLFFGTSSSSNFVQQE 180

Query: 189 INVA-------------QTYPSTSTMLSSSSFHSS-------------IPSIRVDTTAA- 227
           IN A              + PSTS + SS S   S             + S+ VDT  A 
Sbjct: 181 INWAFRPVAGIGTGVPSSSSPSTSAVSSSYSLPISGRRSSYLGRPLIQLQSVGVDTATAT 240

[Close]

BLAST of Cp4.1LG03g13190 vs. ExPASy TrEMBL
Match: A0A5D3E134 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G002540 PE=4 SV=1)

HSP 1 Score: 166 bits (419), Expect = 4.39e-47
Identity = 131/274 (47.81%), Postives = 153/274 (55.84%), Query Frame = 0


Query: 9   MTMVAALNHLSKHPPCGGPGGGDHLMNGGPPISDQY-------------SSSSCIRSNPP 68
           MTMVAALNH SKH      GG DHLMNGG P+ +QY             S+   I  +PP
Sbjct: 1   MTMVAALNHFSKHQH----GGADHLMNGGAPLCNQYYYYYYYYYNYLGSSNPYLISLDPP 60

Query: 69  MADDDESSPNSLHH-QSPSNTDHDAWLQLSIGRVGVVGG--------DQYVIPRTTSPLV 128
           MA+DD S+ NSL+H Q+PSNTD D WLQLSIG  G  G          + + P  +S LV
Sbjct: 61  MAEDD-STTNSLNHDQAPSNTD-DGWLQLSIGGSGGSGNVTGLKHDERESMTPGRSSGLV 120

Query: 129 ELDLLPGGHHPRDIPTDPT-WVLDISSPEAVITSKTETETETETGIGMPM----PLCSSF 188
           ELDLLPGG   RDI  + + WV D SSPE   TSKTET  E   GIG+P+       S+F
Sbjct: 121 ELDLLPGGG--RDISMNYSRWVSDFSSPETTTTSKTETGAEI--GIGLPLFFGTSSSSNF 180

Query: 189 NLTDINVA-------------QTYPSTSTMLSSSSFHSS-------------IPSIRVDT 227
              +IN A              + PSTS + SS S   S             + S+ VDT
Sbjct: 181 VQQEINWAFRPVAGIGTGVPSSSSPSTSAVSSSYSLPISGRRSSYLGRPLIQLQSVGVDT 240

[Close]

BLAST of Cp4.1LG03g13190 vs. TAIR 10
Match: AT5G13250.1 (RING finger protein )

HSP 1 Score: 46.2 bits (108), Expect = 4.0e-05
Identity = 56/205 (27.32%), Postives = 87/205 (42.44%), Query Frame = 0


Query: 45  SSSSCIRSNPPMADDDESSPNSLHHQSPSNTDHD----AWLQLSIGRVGVVGGD-QYVIP 104
           S++S + S     D++ ++ N  ++ +    DH+     WL+LS+G    V  D  +   
Sbjct: 82  STTSRLSSKEDDHDNNSNNNNINNNNNNEAEDHEMRQQGWLRLSLGHEEDVKPDLDHRQQ 141

Query: 105 RTTSP------LVELDLLPGGHHPRDIPTDPTWVLDISSPEA--VITSKTETETETETGI 164
             T P       +EL+L  GG +  +    P   L     +A  ++ +     T  +  I
Sbjct: 142 HQTDPTARRDSFLELNLSSGGSNREEEVGLPLSSLFHHQHQAGGMMINPLMFHTRPQDMI 201

Query: 165 GMPMPLCSSFNLTDINVAQTYPSTSTML---------SSSSFHSSIPSIRVDTTAAGPSS 224
           G              N+ Q   S+S  L           SSF   +         AGPSS
Sbjct: 202 GPWAAAAFRTPFVPQNLTQPSSSSSGSLMMPLMGQYFGRSSFQPQLIGNDNPDGVAGPSS 261

Query: 225 DIRIINPPRRPGSGIWFTLKALENQ 228
            +R+I+PPRRP SGIWF L+A +NQ
Sbjct: 262 SLRVIDPPRRPHSGIWFLLQASQNQ 286

[Close]

BLAST of Cp4.1LG03g13190 vs. TAIR 10
Match: AT1G28080.1 (RING finger protein )

HSP 1 Score: 43.5 bits (101), Expect = 2.6e-04
Identity = 57/213 (26.76%), Postives = 89/213 (41.78%), Query Frame = 0


Query: 38  PPISDQYSSSSCIRSNPPMADDDESSPNSLHHQSPSNTDHD-AWLQLSIGRVGVVGGDQY 97
           P  +D Y+ SS      P+ DD  +  N +      + + D +WL+L IG      G  Y
Sbjct: 47  PGSTDYYNISS-----SPVKDDGTAPKNDVVCSINVDDNKDKSWLRLGIGPEENTDG-SY 106

Query: 98  VIPR---------------------TTSPLVELDLLPGGHHPRDIPTDPTWVLDISSPEA 157
            + R                     +T+    +D LP    P  +P     +L +  P  
Sbjct: 107 KLQRCCSKNGSGRENSLELSLFSSSSTAVSSSIDHLP--TQPLQLPYHHDQLLTMRGPSL 166

Query: 158 VITSK-TETETETETGIGMPMPLCSSFNLTDINVAQTYPSTSTMLSSSSFHSSIPSIRVD 217
           V   +  + +T    G   P    SS       +A   PS+ +    ++ +S   S  VD
Sbjct: 167 VYNHQLMKPQTLLNRGFSFP----SSKPWIPQYMAPFRPSSLSDRDVTNNNSLSRSCCVD 226

Query: 218 TTAAGPSSDIRIINPPRRPGSGIWFTLKALENQ 228
              AGPSS+ R+++PPRRP SG+WF L+A + Q
Sbjct: 227 EGGAGPSSEFRVLDPPRRPHSGLWFLLQASQFQ 247

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g13190 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g13190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023527520.1	4.27e-161	100.00	uncharacterized protein LOC111790726 [Cucurbita pepo subsp. pepo]	[more]
KAG7018408.1	1.07e-146	93.83	hypothetical protein SDJN02_20276, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6581987.1	6.33e-144	92.98	hypothetical protein SDJN03_21989, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022955779.1	5.49e-142	92.07	uncharacterized protein LOC111457668 isoform X1 [Cucurbita moschata]	[more]
XP_022955780.1	2.65e-124	85.46	uncharacterized protein LOC111457668 isoform X2 [Cucurbita moschata]	[more]

BLAST of Cp4.1LG03g13190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GX93	2.66e-142	92.07	uncharacterized protein LOC111457668 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1GW07	1.29e-124	85.46	uncharacterized protein LOC111457668 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1INX5	4.37e-116	83.33	uncharacterized protein LOC111479202 OS=Cucurbita maxima OX=3661 GN=LOC111479202...	[more]
A0A5A7TLY8	9.85e-48	49.26	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3E134	4.39e-47	47.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Cp4.1LG03g13190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13250.1	4.0e-05	27.32	RING finger protein	[more]
AT1G28080.1	2.6e-04	26.76	RING finger protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..75
None	No IPR available	PANTHER	PTHR47290:SF4	RING FINGER PROTEIN	coord: 49..227
IPR044171	Protein LAX PANICLE 2-like	PANTHER	PTHR47290	RING FINGER PROTEIN	coord: 49..227

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g13190.1	Cp4.1LG03g13190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007275	multicellular organism development