Cp4.1LG03g12580 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g12580
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein WHAT'S THIS FACTOR 1
Location	Cp4.1LG03: 10127541 .. 10132528 (-)
RNA-Seq Expression	Cp4.1LG03g12580
Synteny	Cp4.1LG03g12580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTGACCCCTAGGGACTGGTATGTAACACCCCTTAGTTCAAACCTCCTTCGTGGTACGACATTGTGGTTGCACTCCAATGTCGGTTGCAAGTACCAAAGAAAAGAAAATTTCAAGACTTGTTATACTTTAACACCTCGTGCCTCTGTTAAGATTGTCCGTAGTCGTCCATTAGATCGGCATGCTGTAAAACATAACAAAACTCGATTTGTACAAAAGCTGATAATCCTGCTGCTGTCTAAACCAAAGCATTATATACCAATCCACATTCTTTCCAAGTGTCGTGGCTATCTTTCCCTTCCCAAACCCCGCTCTCTTCTTTCAATGATTCATCGTTATCCTTCCATTTTTGAACTTTTTTCAATCCCTTATCCACCCACACCACTCAATGCAACTAAGCTATACCCCCAACTTTGTGTTCGTCTAACCCCAGCAGCAGCATCTCTTGCTAAGCAGGACTCCAATCTCAAATTGGTGATCTCTAACACCCTGGCTGAGAAGCTCCAGAAGTTACTTATGCTTTCTTCACACCACAGGATTCTCTTATCCAAGCTGGTTCACCTTGCTCCCGACCTGAGCATGCCCCCAAATTTTAGGTCCCGTCTCTGTAATGATTATCCAGAAAAATTCAGGACTGTTGATACTTCATATGGCCGTGCACTGGAGCTTGTCTTCTGGGACCCAGAGTTGGCAAAGCCTTTACCTTGCCTTCAAGTTTCTTCACGTGAGCTAATAGTGGATAGACCTTTAAAATTCAACTTGTTGAAACTAAGAAAGGGACTGAACTTGAAAAGAGCCCACCAGGAATTTCTAATTAAGTTCAGGGATTTGCCAGATGTTTGCCCTTACAAAACTCCTGCGAGTGAGTTGGCTAAGGAGTCTCTCGAGTCAGAGAAACGAGCTTGTGCTGTAGTGCGAGAGGTATTGGGGATGATGATTGAGAAGAGGACTTTAATAGATCACTTGACACATTTTAGAAAAGATTTTGGGCTACCCAATAAACTTAGAGGAATGATTGTGAGGCATCCAGAGTTATTTTATGTGAGTCTGAAGGGTCAGAGAGACTCTGTATTCCTTGTAGAGGGGTTCAACGATAAGGGTCATCTAATAGAGAAGGATGAGACTTTGGCTATCAAAAATCAATGGATGAAGCTTTTGATGGAAGGGAAAAGGATGAGACGGGAGAAGAGGAAGGCTCAAATATATGACAGTAGATATGGAAATGATCATGAAAATTATAGTCATGACCATGAGATGGAAACTGACTATGATGATGATTACGAAGATGGTTTTGAGAGTTTATTTCAGTATGAGGATTTAGATTTTGAGGATGAGGAGAGTGATCTGCCAAGCAATAGGTCAAATGGAGACTTTTGGACTACAAATAATGCAGCAGATATTATAAATGACGCAAATGGAGGACATATAGAACCGTGGTGATGGTTAATATAACTTGTTTGATATATTTGGAAGATTCATCAAAATATTTCTACAGTTAACGTAAACAAAGTGCCTCTTCAGTTTGTTTATTAAATTCAGAAAAAGCACTTTGTGAACATAAAGGTCAGGCTTGGAAGCTCAAAGGATGTTTAAATGTAGCCTGGTGATCTTTAGGAAGGGCTGAAGCCACTGCCTCTTGGCTCATGTATTTCTGCTTGAGCAAGGTCCCCATGAATGTATCCTCTGCTGATATAACACTATACCTTCTCCAGCTGTATATTGAACCTGCTTGTCATGTTCTTTTATCTCCTCAAAATGTAGAATGATTGGAATCCCTTATGGAGTGTGAACAAAACTTCTCCCTAATCAAGAGGGATGTATGAAAGATAAGTCCTAACTCCTGTTTATGTGTACCATTTGATACACGAAGACAACATATTCCAGTTAATGAATAATGTAAATATTCAGATATAGTTCGGTACCTCGTCTCTACTCCTTGGTCGCAGGCAGTGAATGTATTCAGATTAATTTTCTCCTCTTTGGGACGGTGTTAATAAGACGGTATTTTCATTTTTCGTTTACTAATTACTCATTTACTGTTTCTTATTTTTAGTTTCTAAGAAGCATGTGTTTAGGAACTATTGTTGCTTCTCGTTTCTCATTTTTAAGAAACAAGAAACAATTATGTATCACTTTTTCTCTTTCATATAAAACAGAAAACATGGAATACGAAACAGGATCCTCACCAAATAAGTCCTAAATTCTTCTGTTAAACATGTGAATAATGTATGTATCACGTCTTGTGTATTTGCGGAGCATTATGGATGGATCCTTCTAGCTTTGGTTGTATCCCTAGTATATGCTCCTAAATTGATGAATTGGCTTCTGATGACTGCACAGTAACAGATATTCTGTGTGGACAGATACGGGTCAAACATTTTTATCCATACTATGATGTGTTACACGTTTTGCCATATATCCTTCATTTCAGTTCTCTGCAGGTATATTAATCGTATGCCTATTTTACTGCTGTTTTCTGAGGTTTGTCTAGCTTTTTATACACAGAATCATTATTTATGATTTTTAGTATATTTTCTAATTTTGATTCAGAAATAGATAGGTGCTGCCAGACATCTTCACTGACGAGACTTTGTTTCTTCTTGATGTTTGTTGGACTCTAGTTGTTTGATGAACACACATACCAATTATTACAAATCAAAAGGTTTGTTAAAAGACACACCCACGCCATCTTTCAGCAGAAAGCATACTTGAAATGTGCGTCATGCTTTGTGCAATTGATATGCATGCATTTGTGCTAATCATTTGTGTTGAATGTTTACTTTAGGTGAGTTCGTGATAACTCTTAAGAGGGTTAAACAGTGTTTTAGTCATTCAAAATTACTCATCAAAATTTTAATGTTGATTAATTACTTAGTCAAAAGTGATTATGGAGCATGTACAAATACTTTAAAGTCGATGAAAGGAAGCACTTAATGAGTGTTCTTTTAAAAAATACTTACTCTTAAAAGTTACCTCAAGGTGTGTTCATTGTAAAAACATTACTTACATTAGAAATTTGCAATCATGTGCTTTGTGCTCCGTGTAATTGATATGCATGCATTTTTGTTCATTATTTCTGCTGAATGTTTATCTTGCAAAGGGTTTAGGAAGAGTTGATGTTCTTAGAAACTCACAGAGGCTAAATTTTATAAGCTTGTGTGGAGGGCACATATTCTGTCACTAGCAATCTGATTTGGTCCCTACTAGTGTTCTGAAAAGGCCAACAAAGCATGTGTCTAGTCACCACGATGCGACTTCCTGCAATGTAGATGAAATCAAAGGAATCGATGAACATCGAAAACAAAGCATAATGATGATGGTATCAGTTTGAGTTTTCAAATGCTCTTATCAATTATTGCTTTAAACCTTTTCTCCTAGCATGTATTAGACTTGCAATTCTCAGAAAACATCTCCTGCAACCTTTTTTAATGCATGTATGTTTAGAGCCTTAGTTGGAGGAAGCAAAGGAAGTTTCCTAAATCAAAATGAACTTTTTGTTGGAAATGATAACCTTTTGGTGAATCTTCCAATAAAAAGTGGTACATAGCATAATCATATGCATCAAATTTATAGTAAATAAATGCATAAAAAGCTTCTCTAACTTATCAGTCATGCAATTCAAAGTATTCATTGTTTATTATCTGTAGGATTTGTAAGTTGTAATGAGCCATCTCTGACAGATAAAGATGAAAAAGAAAGGCTTGCAATTTTTTTGAAGTATTGGGATACTGTTTCAGGCTTTTCAGGGGTCCATGCTTTGCCTTCTTAATAGCCAACAGAACCATCAAAGAAGCAGCTAAGTTAAACCAACCAACCAACCATTTGCTTTCATTTTGTTGGCTTTTAAGGCATTGCAAACTTTAATGGTCCAGAGAAAAGGCCCCAACAGATAGATTCTCGCAAGAATATTTTTCCTTATAATTGCTTCATTTGTTTAGCAATATTAGGATGGATTCATCCATTTAGAACTTAGAATCCTTTTCACATTGTGTTTTCTTCGTTCTTTCTAAGACTTTAGACTAACTTCAATATAAATATTTTGAAACTCAACTTAGACTTGAAATAAAGAAGTTTATGCTACATTTTGCTTGATGCATCTAACTTTTCTTCGATACACTTTCTAATATGATAAACTTTTGTGTCAATATACCATCATTTAGACAGGTACCCACTCAAAGAAGTCATATACCATTTAGACAAGCATCCACTCAAAGAAGTCATATACCATTTAGACGAGAGGTATCTACTTGAAGAGGTCATATACCATTTAGACAGGTATCCACTCGAACATGTCATATACCATTTAGACAGGAGGTATCTACTTGAAGAGGTCATATACTATTTAGACAAGTATGCACTTGAACAGGTCATATACCATTTAGACAGGTATCCACTCGAACGGGTCATATACCATTTAGACGATGGGTATTCACTCGAAGAGGTGAGATATTTAAATTTCTTGTTTTACGTGTCGTTGAAGTAGTAGAAGTAGAAGTAGTAGTAGGTAGTATATTGATTAATAGTAGAGAAAGAGGGACAAAAAGTGTTCGAGAGTTGCATGATAAGTGGGAGAATATGATGAGTAGAGAGAGAGAGTGAATATATTGGGAAGAGAAGTAGGTAGAAATGGCACTCTATACAAAGAGCATGCCTTCCCATTGCAAAAGCTTTAGTTTTCCCCTTCCTTCCTTGTGCATGCTTTTTATTACTCTAATCATGTCTGTTCCCTTAACCTAATTACTTCCCTTCCCCCAAACAACTCATATCTTCCTAACTCCCTAACTATCTTCGTGAAATTTAATTAATATTTATATATATATATAGTCAAATAATTTGTAGAATATTGAAAGATAATAGCAGCATCCACGTCACCCAGTTGGCACCACCGACATGGTTACTATTAGAGAGTCTCATACTCTATGGCAAAATGGTAGTGACGTCAAAATTCTTTTTTTCTTTTTCTTTTTTTTATATTTTTTTAGAGATAA

mRNA sequence

TTCTTGACCCCTAGGGACTGGTATGTAACACCCCTTAGTTCAAACCTCCTTCGTGGTACGACATTGTGGTTGCACTCCAATGTCGGTTGCAAGTACCAAAGAAAAGAAAATTTCAAGACTTGTTATACTTTAACACCTCGTGCCTCTGTTAAGATTGTCCGTAGTCGTCCATTAGATCGGCATGCTGTAAAACATAACAAAACTCGATTTGTACAAAAGCTGATAATCCTGCTGCTGTCTAAACCAAAGCATTATATACCAATCCACATTCTTTCCAAGTGTCGTGGCTATCTTTCCCTTCCCAAACCCCGCTCTCTTCTTTCAATGATTCATCGTTATCCTTCCATTTTTGAACTTTTTTCAATCCCTTATCCACCCACACCACTCAATGCAACTAAGCTATACCCCCAACTTTGTGTTCGTCTAACCCCAGCAGCAGCATCTCTTGCTAAGCAGGACTCCAATCTCAAATTGGTGATCTCTAACACCCTGGCTGAGAAGCTCCAGAAGTTACTTATGCTTTCTTCACACCACAGGATTCTCTTATCCAAGCTGGTTCACCTTGCTCCCGACCTGAGCATGCCCCCAAATTTTAGGTCCCGTCTCTGTAATGATTATCCAGAAAAATTCAGGACTGTTGATACTTCATATGGCCGTGCACTGGAGCTTGTCTTCTGGGACCCAGAGTTGGCAAAGCCTTTACCTTGCCTTCAAGTTTCTTCACGTGAGCTAATAGTGGATAGACCTTTAAAATTCAACTTGTTGAAACTAAGAAAGGGACTGAACTTGAAAAGAGCCCACCAGGAATTTCTAATTAAGTTCAGGGATTTGCCAGATGTTTGCCCTTACAAAACTCCTGCGAGTGAGTTGGCTAAGGAGTCTCTCGAGTCAGAGAAACGAGCTTGTGCTGTAGTGCGAGAGGTATTGGGGATGATGATTGAGAAGAGGACTTTAATAGATCACTTGACACATTTTAGAAAAGATTTTGGGCTACCCAATAAACTTAGAGGAATGATTGTGAGGCATCCAGAGTTATTTTATGTGAGTCTGAAGGGTCAGAGAGACTCTGTATTCCTTGTAGAGGGGTTCAACGATAAGGGAAGGGCTGAAGCCACTGCCTCTTGGCTCATGTATTTCTGCTTGAGCAAGGTCCCCATGAATGTATCCTCTGCTGATATAACACTATACCTTCTCCAGCTATATAGTTCGGTACCTCGTCTCTACTCCTTGGTCGCAGGCAGTGAATGTATTCAGATTAATTTTCTCCTCTTTGGGACGGTGTTAATAAGACGGTATATTAATCGTATGCCTATTTTACTGCTGTTTTCTGAGGTGCTGCCAGACATCTTCACTGACGAGACTTTGTTTCTTCTTGATCAATCTGATTTGGTCCCTACTAGTGTTCTGAAAAGGCCAACAAAGCATGTGTCTAGTCACCACGATGCGACTTCCTGCAATGTAGATGAAATCAAAGGAATCGATGAACATCGAAAACAAAGCATAATGATGATGACTTGCAATTCTCAGAAAACATCTCCTGCAACCTTTTTTAATGCATGTATGTTTAGAGCCTTAGTTGGAGGAAGCAAAGGAAGTTTCCTAAATCAAAATGAACTTTTTGTTGGAAATGATAACCTTTTGGTGAATCTTCCAATAAAAAGTGGATTTGTAAGTTGTAATGAGCCATCTCTGACAGATAAAGATGAAAAAGAAAGGCTTGCAATTTTTTTGAAGCTTTTCAGGGGTCCATGCTTTGCCTTCTTAATAGCCAACAGAACCATCAAAGAAGCAGCTAAGTACCCACTCAAAGAAGTCATATACCATTTAGACAAGCATCCACTCAAAGAAGTCATATACCATTTAGACGAGAGGTATCTACTTGAAGAGGTCATATACCATTTAGACAGGTATCCACTCGAACATGTCATATACCATTTAGACAGGAGGTATCTACTTGAAGAGGTCATATACTATTTAGACAAGTATGCACTTGAACAGGTCATATACCATTTAGACAGAATATTGAAAGATAATAGCAGCATCCACGTCACCCAGTTGGCACCACCGACATGGTTACTATTAGAGAGTCTCATACTCTATGGCAAAATGAGATAA

Coding sequence (CDS)

TTCTTGACCCCTAGGGACTGGTATGTAACACCCCTTAGTTCAAACCTCCTTCGTGGTACGACATTGTGGTTGCACTCCAATGTCGGTTGCAAGTACCAAAGAAAAGAAAATTTCAAGACTTGTTATACTTTAACACCTCGTGCCTCTGTTAAGATTGTCCGTAGTCGTCCATTAGATCGGCATGCTGTAAAACATAACAAAACTCGATTTGTACAAAAGCTGATAATCCTGCTGCTGTCTAAACCAAAGCATTATATACCAATCCACATTCTTTCCAAGTGTCGTGGCTATCTTTCCCTTCCCAAACCCCGCTCTCTTCTTTCAATGATTCATCGTTATCCTTCCATTTTTGAACTTTTTTCAATCCCTTATCCACCCACACCACTCAATGCAACTAAGCTATACCCCCAACTTTGTGTTCGTCTAACCCCAGCAGCAGCATCTCTTGCTAAGCAGGACTCCAATCTCAAATTGGTGATCTCTAACACCCTGGCTGAGAAGCTCCAGAAGTTACTTATGCTTTCTTCACACCACAGGATTCTCTTATCCAAGCTGGTTCACCTTGCTCCCGACCTGAGCATGCCCCCAAATTTTAGGTCCCGTCTCTGTAATGATTATCCAGAAAAATTCAGGACTGTTGATACTTCATATGGCCGTGCACTGGAGCTTGTCTTCTGGGACCCAGAGTTGGCAAAGCCTTTACCTTGCCTTCAAGTTTCTTCACGTGAGCTAATAGTGGATAGACCTTTAAAATTCAACTTGTTGAAACTAAGAAAGGGACTGAACTTGAAAAGAGCCCACCAGGAATTTCTAATTAAGTTCAGGGATTTGCCAGATGTTTGCCCTTACAAAACTCCTGCGAGTGAGTTGGCTAAGGAGTCTCTCGAGTCAGAGAAACGAGCTTGTGCTGTAGTGCGAGAGGTATTGGGGATGATGATTGAGAAGAGGACTTTAATAGATCACTTGACACATTTTAGAAAAGATTTTGGGCTACCCAATAAACTTAGAGGAATGATTGTGAGGCATCCAGAGTTATTTTATGTGAGTCTGAAGGGTCAGAGAGACTCTGTATTCCTTGTAGAGGGGTTCAACGATAAGGGAAGGGCTGAAGCCACTGCCTCTTGGCTCATGTATTTCTGCTTGAGCAAGGTCCCCATGAATGTATCCTCTGCTGATATAACACTATACCTTCTCCAGCTATATAGTTCGGTACCTCGTCTCTACTCCTTGGTCGCAGGCAGTGAATGTATTCAGATTAATTTTCTCCTCTTTGGGACGGTGTTAATAAGACGGTATATTAATCGTATGCCTATTTTACTGCTGTTTTCTGAGGTGCTGCCAGACATCTTCACTGACGAGACTTTGTTTCTTCTTGATCAATCTGATTTGGTCCCTACTAGTGTTCTGAAAAGGCCAACAAAGCATGTGTCTAGTCACCACGATGCGACTTCCTGCAATGTAGATGAAATCAAAGGAATCGATGAACATCGAAAACAAAGCATAATGATGATGACTTGCAATTCTCAGAAAACATCTCCTGCAACCTTTTTTAATGCATGTATGTTTAGAGCCTTAGTTGGAGGAAGCAAAGGAAGTTTCCTAAATCAAAATGAACTTTTTGTTGGAAATGATAACCTTTTGGTGAATCTTCCAATAAAAAGTGGATTTGTAAGTTGTAATGAGCCATCTCTGACAGATAAAGATGAAAAAGAAAGGCTTGCAATTTTTTTGAAGCTTTTCAGGGGTCCATGCTTTGCCTTCTTAATAGCCAACAGAACCATCAAAGAAGCAGCTAAGTACCCACTCAAAGAAGTCATATACCATTTAGACAAGCATCCACTCAAAGAAGTCATATACCATTTAGACGAGAGGTATCTACTTGAAGAGGTCATATACCATTTAGACAGGTATCCACTCGAACATGTCATATACCATTTAGACAGGAGGTATCTACTTGAAGAGGTCATATACTATTTAGACAAGTATGCACTTGAACAGGTCATATACCATTTAGACAGAATATTGAAAGATAATAGCAGCATCCACGTCACCCAGTTGGCACCACCGACATGGTTACTATTAGAGAGTCTCATACTCTATGGCAAAATGAGATAA

Protein sequence

FLTPRDWYVTPLSSNLLRGTTLWLHSNVGCKYQRKENFKTCYTLTPRASVKIVRSRPLDRHAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGYLSLPKPRSLLSMIHRYPSIFELFSIPYPPTPLNATKLYPQLCVRLTPAAASLAKQDSNLKLVISNTLAEKLQKLLMLSSHHRILLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVFWDPELAKPLPCLQVSSRELIVDRPLKFNLLKLRKGLNLKRAHQEFLIKFRDLPDVCPYKTPASELAKESLESEKRACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLVEGFNDKGRAEATASWLMYFCLSKVPMNVSSADITLYLLQLYSSVPRLYSLVAGSECIQINFLLFGTVLIRRYINRMPILLLFSEVLPDIFTDETLFLLDQSDLVPTSVLKRPTKHVSSHHDATSCNVDEIKGIDEHRKQSIMMMTCNSQKTSPATFFNACMFRALVGGSKGSFLNQNELFVGNDNLLVNLPIKSGFVSCNEPSLTDKDEKERLAIFLKLFRGPCFAFLIANRTIKEAAKYPLKEVIYHLDKHPLKEVIYHLDERYLLEEVIYHLDRYPLEHVIYHLDRRYLLEEVIYYLDKYALEQVIYHLDRILKDNSSIHVTQLAPPTWLLLESLILYGKMR

Homology

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BLAST of Cp4.1LG03g12580 vs. ExPASy Swiss-Prot
Match: B6TTV8 (Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.2e-60
Identity = 135/332 (40.66%), Postives = 186/332 (56.02%), Query Frame = 0


Query: 47  RASVKIVRSRPLDRHAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGYLSLPKPRSL 106
           +A+VK  +  P D    +  K + V KL  +L+++P   + +  L + R  L L + R L
Sbjct: 52  QAAVKRRKEAPFDTVIQRDKKLKLVLKLRNILVAQPDRVMSLRELGRFRRDLGLTRKRRL 111

Query: 107 LSMIHRYPSIFELFSIPYPPTPLNATKLYPQLCVRLTPAAASLAKQDSNLKLVISNTLAE 166
           ++++ R+P +F++              +Y  L  RLTPAA  L   +  L+         
Sbjct: 112 IALLRRFPGVFDVVE----------EGVY-SLRFRLTPAAERLYLDELRLRNESEGLAVA 171

Query: 167 KLQKLLMLSSHHRILLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVFW 226
           KL+KLLM+S   RIL+ K+ HL  DL +PP FR  +C  YP+ FR V    G ALEL  W
Sbjct: 172 KLRKLLMMSQEKRILIEKVAHLKHDLGLPPEFRDTVCLRYPQYFRVVRMDRGPALELTHW 231

Query: 227 DPELAKPLPCL--------QVSSRELIVDRPLKFNLLKLRKGLNLKRAHQEFLIKFRDLP 286
           DPELA     L        +   R LI+DRPLKFN ++L KGL L R     + +F+++P
Sbjct: 232 DPELAVSAAELAEEESRAREAEERNLIIDRPLKFNRVRLPKGLKLTRGEARRIARFKEMP 291

Query: 287 DVCPYKTPASELAKESLESEKRACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGM 346
            + PY    S L   S E EK AC VV E+L + +EKRTL+DHLTHFR++F     LRGM
Sbjct: 292 YISPY-ADFSHLRSGSDEKEKHACGVVHEILSLTVEKRTLVDHLTHFREEFRFSQSLRGM 351

Query: 347 IVRHPELFYVSLKGQRDSVFLVEGFNDKGRAE 371
           I+RHP++FYVS KG RDSVFL E + D    E
Sbjct: 352 IIRHPDMFYVSFKGDRDSVFLREAYKDSQLVE 371

[Close]

BLAST of Cp4.1LG03g12580 vs. ExPASy Swiss-Prot
Match: Q65XL5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0571100 PE=2 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.2e-60
Identity = 135/332 (40.66%), Postives = 187/332 (56.33%), Query Frame = 0


Query: 47  RASVKIVRSRPLDRHAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGYLSLPKPRSL 106
           +A+VK  +  P D    +  K + V KL  +L+S P   + +  L + R  L L + R L
Sbjct: 58  QAAVKRRKEIPFDNVIQRDKKLKLVLKLRNILVSNPDRVMSLRDLGRFRRDLGLTRKRRL 117

Query: 107 LSMIHRYPSIFELFSIPYPPTPLNATKLYPQLCVRLTPAAASLAKQDSNLKLVISNTLAE 166
           ++++ R+P +FE+              +Y  L  RLTPAA  L   + +LK         
Sbjct: 118 IALLKRFPGVFEVVE----------EGVY-SLRFRLTPAAERLYLDELHLKNESEGLAVT 177

Query: 167 KLQKLLMLSSHHRILLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVFW 226
           KL+KLLM+S   RIL+ K+ HL  DL +PP FR  +C  YP+ FR V    G  LEL  W
Sbjct: 178 KLRKLLMMSQDKRILIEKIAHLKNDLGLPPEFRDTICLRYPQYFRVVQMDRGPGLELTHW 237

Query: 227 DPELA--------KPLPCLQVSSRELIVDRPLKFNLLKLRKGLNLKRAHQEFLIKFRDLP 286
           DPELA        +     +   R LI+DRPLKFN +KL +GL L R     + +F+++P
Sbjct: 238 DPELAVSAAEVAEEENRAREEQERNLIIDRPLKFNRVKLPQGLKLSRGEARRVAQFKEMP 297

Query: 287 DVCPYKTPASELAKESLESEKRACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGM 346
            + PY +  S L   S E EK AC VV E+L + +EKRTL+DHLTHFR++F     LRGM
Sbjct: 298 YISPY-SDFSHLRSGSAEKEKHACGVVHEILSLTLEKRTLVDHLTHFREEFRFSQSLRGM 357

Query: 347 IVRHPELFYVSLKGQRDSVFLVEGFNDKGRAE 371
           ++RHP++FYVSLKG RDSVFL E + +    E
Sbjct: 358 LIRHPDMFYVSLKGDRDSVFLREAYKNSQLVE 377

[Close]

BLAST of Cp4.1LG03g12580 vs. ExPASy Swiss-Prot
Match: A0MFS5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01037 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 5.6e-58
Identity = 133/336 (39.58%), Postives = 190/336 (56.55%), Query Frame = 0


Query: 39  KTCYTLTP-RASVKIVRSRPLDRHAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGY 98
           KT   + P RA+VK  +    D    +  K + V  +  +L+S+P   + +  L K R  
Sbjct: 64  KTRVVVEPVRAAVKRRKELTFDSVVQRDKKLKLVLNIRKILVSQPDRMMSLRGLGKYRRD 123

Query: 99  LSLPKPRSLLSMIHRYPSIFELFSIPYPPTPLNATKLYPQLCVRLTPAAASLAKQDSNLK 158
           L L K R  ++++ +YP +FE+             +    L  ++T  A  L   +  ++
Sbjct: 124 LGLKKRRRFIALLRKYPGVFEI-----------VEEGAYSLRFKMTSEAERLYLDEMRIR 183

Query: 159 LVISNTLAEKLQKLLMLSSHHRILLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSY 218
             + + L  KL+KL+M+S   RILL K+ HL  DL +P  FR  +C  YP+ FR V T  
Sbjct: 184 NELEDVLVVKLRKLVMMSIDKRILLEKISHLKTDLGLPLEFRDTICQRYPQYFRVVPTPR 243

Query: 219 GRALELVFWDPELAKPLPCL--------QVSSRELIVDRPLKFNLLKLRKGLNLKRAHQE 278
           G ALEL  WDPELA     L        +   R LI+DRP KFN +KL +GLNL ++   
Sbjct: 244 GPALELTHWDPELAVSAAELSEDDNRTRESEERNLIIDRPPKFNRVKLPRGLNLSKSETR 303

Query: 279 FLIKFRDLPDVCPYKTPASELAKESLESEKRACAVVREVLGMMIEKRTLIDHLTHFRKDF 338
            + +FRD+  + PYK   S L   +LE EK AC V+ E+L +  EKRTL+DHLTHFR++F
Sbjct: 304 KISQFRDMQYISPYK-DFSHLRSGTLEKEKHACGVIHELLSLTTEKRTLVDHLTHFREEF 363

Query: 339 GLPNKLRGMIVRHPELFYVSLKGQRDSVFLVEGFND 366
               +LRGM++RHP+LFYVSLKG+RDSVFL E + +
Sbjct: 364 RFSQQLRGMLIRHPDLFYVSLKGERDSVFLREAYRN 387

[Close]

BLAST of Cp4.1LG03g12580 vs. ExPASy Swiss-Prot
Match: Q689D6 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.1e-17
Identity = 86/328 (26.22%), Postives = 152/328 (46.34%), Query Frame = 0


Query: 53  VRSRPLDRHAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGYLSLP-KPRSLLSMIH 112
           VR    D +     K R V K   L+LS+P H I I +L      L L  K     + + 
Sbjct: 47  VRDHGYDNYMEVEKKIRKVVKFHSLILSQPNHTIAISLLDTLARRLGLGFKQHEPGAFLL 106

Query: 113 RYPSIFELFSIPYPPTPLNATKLYPQLCVRLTPAAASLAKQDSNLKLVISNTLAEKLQKL 172
           ++P +FE++  P          +   L  RLT  A    + +    L        +L+KL
Sbjct: 107 KFPHVFEIYEHP----------VQRILYCRLTRKALDQIRHEHEAVLDQIPDAVTRLRKL 166

Query: 173 LMLSSHHRILLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVD--TSYGRALELVFWDPE 232
           +M+S+  RI L  +     +  +P +F   +   +P+ FR +D   +  + +E+V  DP 
Sbjct: 167 VMMSNTGRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRDKYIEIVEKDPN 226

Query: 233 LAKPLPCLQVSSREL------IVDRPLKFN-LLKLRKGLNLKRAHQEFLIKFRDLPDVCP 292
           L+    C     RE+      I    ++F+ ++    G  + +  +  + K++ LP   P
Sbjct: 227 LS---ICAIERVREIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQRLPYWSP 286

Query: 293 YKTPASELAKESLES----EKRACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGM 352
           Y+   S     S+E+    EKR+ A + E+L + +EK+  ++ + HFR    LP KL+  
Sbjct: 287 YE-DISGYDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEF 346

Query: 353 IVRHPELFYVSLK---GQRDSVFLVEGF 364
           +++H  +FY+S +   G+  +VFL EG+
Sbjct: 347 LLQHQGIFYISTRGNYGKLHTVFLREGY 360

[Close]

BLAST of Cp4.1LG03g12580 vs. ExPASy Swiss-Prot
Match: Q9ZUZ6 (Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=WTF9 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.8e-17
Identity = 82/318 (25.79%), Postives = 144/318 (45.28%), Query Frame = 0


Query: 61  HAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGYLSLPKPRSLLSMIHRYPSIFELF 120
           H ++ ++ + V  L   ++ +P   IPI  +SK      +     +   + ++PSIFE F
Sbjct: 42  HILRSSQLKSVVSLKNCIVQEPNRCIPISAISKKTRQFDV--STKIAHFLRKFPSIFEEF 101

Query: 121 SIPYPPTPLNATKLYPQLCVRLTPAAASLAKQDSNLKLVISNTLAEKLQKLLMLSSHHRI 180
             P    P            RLTP A  L +Q+  +    ++ L ++L+KL+++S  + +
Sbjct: 102 VGPEYNLP----------WFRLTPEATELDRQERVVYQTSADDLRDRLKKLILMSKDNVL 161

Query: 181 LLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTS---YGRALELVFWDPELAKPLPCL 240
            LS +  +   L +P ++      +    FR VD      G A++    D  L+      
Sbjct: 162 PLSIVQGMKWYLGLPDDYLQFPDMNLDSSFRFVDMEDGVKGLAVDYNGGDKVLSVLQKNA 221

Query: 241 QVSSRELIVDRPLKFNLLKLRKGLNLKRAHQEFLIKFRDLPDVCPYK-----TPASELAK 300
               R  +    ++F L    KG  L+   +++L++F+ LP V PY       P+S++A 
Sbjct: 222 MKKRRGEVSLEEIEFPLFP-SKGCRLRVKIEDWLMEFQKLPYVSPYDDYSCLDPSSDIA- 281

Query: 301 ESLESEKRACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKG 360
                EKR    + E+L + +E       L   +K FGLP K+     RHP++FY+S+K 
Sbjct: 282 -----EKRVVGFLHELLCLFVEHSAERKKLLCLKKHFGLPQKVHKAFERHPQIFYLSMKN 340

Query: 361 QRDSVFLVEGFNDKGRAE 371
           +  +  L E + DK   E
Sbjct: 342 KTCTAILREPYRDKASVE 340

[Close]

BLAST of Cp4.1LG03g12580 vs. NCBI nr
Match: KAG6582056.1 (Protein WHAT'S THIS FACTOR 1-like, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 768 bits (1983), Expect = 3.80e-267
Identity = 415/528 (78.60%), Postives = 428/528 (81.06%), Query Frame = 0


Query: 1   FLTPRDWYVTPLSSNLLRGTTLWLHSNVGCKYQRKENFKTCYTLTPRASVKIVRSRPLDR 60
           FLTPRDW+VT LSSNLL GT LWLHSNVGCKYQRKENFKTCYTLTPRASVKIVRSRPLDR
Sbjct: 7   FLTPRDWHVTSLSSNLLCGTPLWLHSNVGCKYQRKENFKTCYTLTPRASVKIVRSRPLDR 66

Query: 61  HAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGYLSLPKPRSLLSMIHRYPSIFELF 120
           HAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGYLSLPKPRSLLSMIHRYPSIFELF
Sbjct: 67  HAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGYLSLPKPRSLLSMIHRYPSIFELF 126

Query: 121 SIPYPPTPLNATKLYPQLCVRLTPAAASLAKQDSNLKLVISNTLAEKLQKLLMLSSHHRI 180
           SIPYPPTPLNATKLYPQLCVRLTP AASLAKQDSNLKLVISNTLAEKLQKLLMLSSHHRI
Sbjct: 127 SIPYPPTPLNATKLYPQLCVRLTPVAASLAKQDSNLKLVISNTLAEKLQKLLMLSSHHRI 186

Query: 181 LLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVFWDPELAKPLPCLQVS 240
           LLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVFWDPELAKPLPCLQVS
Sbjct: 187 LLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVFWDPELAKPLPCLQVS 246

Query: 241 SRELIVDRPLKFNLLKLRKGLNLKRAHQEFLIKFRDLPDVCPYKTPASELAKESLESEKR 300
           SRELIVDRPLKFNLLKLRKGLNLKRAHQEFLIKFRDLPDVCPYKTPASELAKESLESEKR
Sbjct: 247 SRELIVDRPLKFNLLKLRKGLNLKRAHQEFLIKFRDLPDVCPYKTPASELAKESLESEKR 306

Query: 301 ACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV 360
           ACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV
Sbjct: 307 ACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV 366

Query: 361 EGFNDKG----RAEATA---SWLMYFCLSKVPMNVSSADITLYLLQLYSSVPRLYSLVAG 420
           EGFNDKG    + E  A    W+      K  M        +Y  + Y +    +S    
Sbjct: 367 EGFNDKGHLIEKDETLAIKNQWMKLLMEGK-RMRREKRKAQIYDSR-YGNDHENHSHDHE 426

Query: 421 SECIQINFLLFGTVLIRRY-------------INRMPILLLFSEVLPDIFTDETLFLLDQ 480
            E    +    G   + +Y              NR       +    DI   E       
Sbjct: 427 METDYDDDYEDGFESLFQYEDLDFEDEESDLPSNRSNGDFWTTNNAADIINGEN------ 486

Query: 481 SDLVPTSVLKRPTKHVSSHHDATSCNVDEIKGIDEHRKQSIMMMTCNS 508
              +   VLKRPTKHVSSHHDATSCNVDE KGIDEHRKQSIMMM C +
Sbjct: 487 GGHIEPCVLKRPTKHVSSHHDATSCNVDENKGIDEHRKQSIMMMECKA 526

[Close]

BLAST of Cp4.1LG03g12580 vs. NCBI nr
Match: XP_023527715.1 (protein WHAT'S THIS FACTOR 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 739 bits (1909), Expect = 9.17e-262
Identity = 367/367 (100.00%), Postives = 367/367 (100.00%), Query Frame = 0


Query: 1   FLTPRDWYVTPLSSNLLRGTTLWLHSNVGCKYQRKENFKTCYTLTPRASVKIVRSRPLDR 60
           FLTPRDWYVTPLSSNLLRGTTLWLHSNVGCKYQRKENFKTCYTLTPRASVKIVRSRPLDR
Sbjct: 7   FLTPRDWYVTPLSSNLLRGTTLWLHSNVGCKYQRKENFKTCYTLTPRASVKIVRSRPLDR 66

Query: 61  HAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGYLSLPKPRSLLSMIHRYPSIFELF 120
           HAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGYLSLPKPRSLLSMIHRYPSIFELF
Sbjct: 67  HAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGYLSLPKPRSLLSMIHRYPSIFELF 126

Query: 121 SIPYPPTPLNATKLYPQLCVRLTPAAASLAKQDSNLKLVISNTLAEKLQKLLMLSSHHRI 180
           SIPYPPTPLNATKLYPQLCVRLTPAAASLAKQDSNLKLVISNTLAEKLQKLLMLSSHHRI
Sbjct: 127 SIPYPPTPLNATKLYPQLCVRLTPAAASLAKQDSNLKLVISNTLAEKLQKLLMLSSHHRI 186

Query: 181 LLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVFWDPELAKPLPCLQVS 240
           LLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVFWDPELAKPLPCLQVS
Sbjct: 187 LLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVFWDPELAKPLPCLQVS 246

Query: 241 SRELIVDRPLKFNLLKLRKGLNLKRAHQEFLIKFRDLPDVCPYKTPASELAKESLESEKR 300
           SRELIVDRPLKFNLLKLRKGLNLKRAHQEFLIKFRDLPDVCPYKTPASELAKESLESEKR
Sbjct: 247 SRELIVDRPLKFNLLKLRKGLNLKRAHQEFLIKFRDLPDVCPYKTPASELAKESLESEKR 306

Query: 301 ACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV 360
           ACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV
Sbjct: 307 ACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV 366

Query: 361 EGFNDKG 367
           EGFNDKG
Sbjct: 367 EGFNDKG 373

[Close]

BLAST of Cp4.1LG03g12580 vs. NCBI nr
Match: XP_022955645.1 (protein WHAT'S THIS FACTOR 1 [Cucurbita moschata] >XP_022955646.1 protein WHAT'S THIS FACTOR 1 [Cucurbita moschata] >KAG7018490.1 Protein ROOT PRIMORDIUM DEFECTIVE 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 728 bits (1878), Expect = 4.67e-257
Identity = 362/367 (98.64%), Postives = 363/367 (98.91%), Query Frame = 0


Query: 1   FLTPRDWYVTPLSSNLLRGTTLWLHSNVGCKYQRKENFKTCYTLTPRASVKIVRSRPLDR 60
           FLTPRDW+VT LSSNLL GT LWLHSNVGCKYQRKENFKTCYTLTPRASVKIVRSRPLDR
Sbjct: 7   FLTPRDWHVTSLSSNLLCGTPLWLHSNVGCKYQRKENFKTCYTLTPRASVKIVRSRPLDR 66

Query: 61  HAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGYLSLPKPRSLLSMIHRYPSIFELF 120
           HAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGYLSLPKPRSLLSMIHRYPSIFELF
Sbjct: 67  HAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGYLSLPKPRSLLSMIHRYPSIFELF 126

Query: 121 SIPYPPTPLNATKLYPQLCVRLTPAAASLAKQDSNLKLVISNTLAEKLQKLLMLSSHHRI 180
           SIPYPPTPLNATKLYPQLCVRLTP AASLAKQDSNLKLVISNTLAEKLQKLLMLSSHHRI
Sbjct: 127 SIPYPPTPLNATKLYPQLCVRLTPVAASLAKQDSNLKLVISNTLAEKLQKLLMLSSHHRI 186

Query: 181 LLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVFWDPELAKPLPCLQVS 240
           LLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVFWDPELAKPLPCLQVS
Sbjct: 187 LLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVFWDPELAKPLPCLQVS 246

Query: 241 SRELIVDRPLKFNLLKLRKGLNLKRAHQEFLIKFRDLPDVCPYKTPASELAKESLESEKR 300
           SRELIVDRPLKFNLLKLRKGLNLKRAHQEFLIKFRDLPDVCPYKTPASELAKESLESEKR
Sbjct: 247 SRELIVDRPLKFNLLKLRKGLNLKRAHQEFLIKFRDLPDVCPYKTPASELAKESLESEKR 306

Query: 301 ACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV 360
           ACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV
Sbjct: 307 ACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV 366

Query: 361 EGFNDKG 367
           EGFNDKG
Sbjct: 367 EGFNDKG 373

[Close]

BLAST of Cp4.1LG03g12580 vs. NCBI nr
Match: XP_022979770.1 (protein WHAT'S THIS FACTOR 1 [Cucurbita maxima] >XP_022979771.1 protein WHAT'S THIS FACTOR 1 [Cucurbita maxima])

HSP 1 Score: 718 bits (1854), Expect = 2.05e-253
Identity = 359/367 (97.82%), Postives = 361/367 (98.37%), Query Frame = 0


Query: 1   FLTPRDWYVTPLSSNLLRGTTLWLHSNVGCKYQRKENFKTCYTLTPRASVKIVRSRPLDR 60
           FLTPRDW+VT  SSNLLRGT LWLHSNVGCKYQRKENF+T YTLTPRASVKIVRS PLDR
Sbjct: 7   FLTPRDWHVTSRSSNLLRGTPLWLHSNVGCKYQRKENFETSYTLTPRASVKIVRSCPLDR 66

Query: 61  HAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGYLSLPKPRSLLSMIHRYPSIFELF 120
           HAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGYLSLPKPRSLLSMIHRYPSIFELF
Sbjct: 67  HAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGYLSLPKPRSLLSMIHRYPSIFELF 126

Query: 121 SIPYPPTPLNATKLYPQLCVRLTPAAASLAKQDSNLKLVISNTLAEKLQKLLMLSSHHRI 180
           SIPYPPTPLNATKLYPQLCVRLTPAAASLAKQDSNLKLVISNTLAEKLQKLLMLSSHHRI
Sbjct: 127 SIPYPPTPLNATKLYPQLCVRLTPAAASLAKQDSNLKLVISNTLAEKLQKLLMLSSHHRI 186

Query: 181 LLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVFWDPELAKPLPCLQVS 240
           LLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVFWDPELAK LPCLQVS
Sbjct: 187 LLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVFWDPELAKTLPCLQVS 246

Query: 241 SRELIVDRPLKFNLLKLRKGLNLKRAHQEFLIKFRDLPDVCPYKTPASELAKESLESEKR 300
           SRELIVDRPLKFNLLKLRKGLNLKRAHQEFLIKFRDLPDVCPYKTPASELAKESLESEKR
Sbjct: 247 SRELIVDRPLKFNLLKLRKGLNLKRAHQEFLIKFRDLPDVCPYKTPASELAKESLESEKR 306

Query: 301 ACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV 360
           ACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV
Sbjct: 307 ACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV 366

Query: 361 EGFNDKG 367
           EGFNDKG
Sbjct: 367 EGFNDKG 373

[Close]

BLAST of Cp4.1LG03g12580 vs. NCBI nr
Match: XP_038904265.1 (protein WHAT'S THIS FACTOR 1, chloroplastic [Benincasa hispida] >XP_038904305.1 protein WHAT'S THIS FACTOR 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 692 bits (1787), Expect = 2.91e-243
Identity = 345/367 (94.01%), Postives = 356/367 (97.00%), Query Frame = 0


Query: 1   FLTPRDWYVTPLSSNLLRGTTLWLHSNVGCKYQRKENFKTCYTLTPRASVKIVRSRPLDR 60
           FLTP DW+VT LSSNLL G  LWLHSNV CKYQRKENF+T YTLTP +S+KIVRSR LDR
Sbjct: 7   FLTPTDWHVTLLSSNLLCGNPLWLHSNVSCKYQRKENFETRYTLTPCSSLKIVRSRSLDR 66

Query: 61  HAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGYLSLPKPRSLLSMIHRYPSIFELF 120
           HAVKHNKTRFVQKLIILLLSKPKHYIP+HILSKCRGYLSLP+PRSLLSMIHRYPSIFELF
Sbjct: 67  HAVKHNKTRFVQKLIILLLSKPKHYIPLHILSKCRGYLSLPRPRSLLSMIHRYPSIFELF 126

Query: 121 SIPYPPTPLNATKLYPQLCVRLTPAAASLAKQDSNLKLVISNTLAEKLQKLLMLSSHHRI 180
           SIPYPPTPLNATK+YPQLCVRLTPAAASLAKQDS+LKLVISNTLAEKLQKLLMLSSHHRI
Sbjct: 127 SIPYPPTPLNATKVYPQLCVRLTPAAASLAKQDSDLKLVISNTLAEKLQKLLMLSSHHRI 186

Query: 181 LLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVFWDPELAKPLPCLQVS 240
           LLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELV WDPELAKPLPCLQV 
Sbjct: 187 LLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVSWDPELAKPLPCLQVP 246

Query: 241 SRELIVDRPLKFNLLKLRKGLNLKRAHQEFLIKFRDLPDVCPYKTPASELAKESLESEKR 300
           SRELIVDRPLKFNLL+LRKGLNLKRAHQEFLIKFRDLPDVCPYKTPASELAKESLESEKR
Sbjct: 247 SRELIVDRPLKFNLLRLRKGLNLKRAHQEFLIKFRDLPDVCPYKTPASELAKESLESEKR 306

Query: 301 ACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV 360
           ACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV
Sbjct: 307 ACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV 366

Query: 361 EGFNDKG 367
           EGF++KG
Sbjct: 367 EGFDEKG 373

[Close]

BLAST of Cp4.1LG03g12580 vs. ExPASy TrEMBL
Match: A0A6J1GVP1 (protein WHAT'S THIS FACTOR 1 OS=Cucurbita moschata OX=3662 GN=LOC111457587 PE=4 SV=1)

HSP 1 Score: 728 bits (1878), Expect = 2.26e-257
Identity = 362/367 (98.64%), Postives = 363/367 (98.91%), Query Frame = 0


Query: 1   FLTPRDWYVTPLSSNLLRGTTLWLHSNVGCKYQRKENFKTCYTLTPRASVKIVRSRPLDR 60
           FLTPRDW+VT LSSNLL GT LWLHSNVGCKYQRKENFKTCYTLTPRASVKIVRSRPLDR
Sbjct: 7   FLTPRDWHVTSLSSNLLCGTPLWLHSNVGCKYQRKENFKTCYTLTPRASVKIVRSRPLDR 66

Query: 61  HAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGYLSLPKPRSLLSMIHRYPSIFELF 120
           HAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGYLSLPKPRSLLSMIHRYPSIFELF
Sbjct: 67  HAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGYLSLPKPRSLLSMIHRYPSIFELF 126

Query: 121 SIPYPPTPLNATKLYPQLCVRLTPAAASLAKQDSNLKLVISNTLAEKLQKLLMLSSHHRI 180
           SIPYPPTPLNATKLYPQLCVRLTP AASLAKQDSNLKLVISNTLAEKLQKLLMLSSHHRI
Sbjct: 127 SIPYPPTPLNATKLYPQLCVRLTPVAASLAKQDSNLKLVISNTLAEKLQKLLMLSSHHRI 186

Query: 181 LLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVFWDPELAKPLPCLQVS 240
           LLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVFWDPELAKPLPCLQVS
Sbjct: 187 LLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVFWDPELAKPLPCLQVS 246

Query: 241 SRELIVDRPLKFNLLKLRKGLNLKRAHQEFLIKFRDLPDVCPYKTPASELAKESLESEKR 300
           SRELIVDRPLKFNLLKLRKGLNLKRAHQEFLIKFRDLPDVCPYKTPASELAKESLESEKR
Sbjct: 247 SRELIVDRPLKFNLLKLRKGLNLKRAHQEFLIKFRDLPDVCPYKTPASELAKESLESEKR 306

Query: 301 ACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV 360
           ACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV
Sbjct: 307 ACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV 366

Query: 361 EGFNDKG 367
           EGFNDKG
Sbjct: 367 EGFNDKG 373

[Close]

BLAST of Cp4.1LG03g12580 vs. ExPASy TrEMBL
Match: A0A6J1IUA5 (protein WHAT'S THIS FACTOR 1 OS=Cucurbita maxima OX=3661 GN=LOC111479376 PE=4 SV=1)

HSP 1 Score: 718 bits (1854), Expect = 9.93e-254
Identity = 359/367 (97.82%), Postives = 361/367 (98.37%), Query Frame = 0


Query: 1   FLTPRDWYVTPLSSNLLRGTTLWLHSNVGCKYQRKENFKTCYTLTPRASVKIVRSRPLDR 60
           FLTPRDW+VT  SSNLLRGT LWLHSNVGCKYQRKENF+T YTLTPRASVKIVRS PLDR
Sbjct: 7   FLTPRDWHVTSRSSNLLRGTPLWLHSNVGCKYQRKENFETSYTLTPRASVKIVRSCPLDR 66

Query: 61  HAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGYLSLPKPRSLLSMIHRYPSIFELF 120
           HAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGYLSLPKPRSLLSMIHRYPSIFELF
Sbjct: 67  HAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGYLSLPKPRSLLSMIHRYPSIFELF 126

Query: 121 SIPYPPTPLNATKLYPQLCVRLTPAAASLAKQDSNLKLVISNTLAEKLQKLLMLSSHHRI 180
           SIPYPPTPLNATKLYPQLCVRLTPAAASLAKQDSNLKLVISNTLAEKLQKLLMLSSHHRI
Sbjct: 127 SIPYPPTPLNATKLYPQLCVRLTPAAASLAKQDSNLKLVISNTLAEKLQKLLMLSSHHRI 186

Query: 181 LLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVFWDPELAKPLPCLQVS 240
           LLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVFWDPELAK LPCLQVS
Sbjct: 187 LLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVFWDPELAKTLPCLQVS 246

Query: 241 SRELIVDRPLKFNLLKLRKGLNLKRAHQEFLIKFRDLPDVCPYKTPASELAKESLESEKR 300
           SRELIVDRPLKFNLLKLRKGLNLKRAHQEFLIKFRDLPDVCPYKTPASELAKESLESEKR
Sbjct: 247 SRELIVDRPLKFNLLKLRKGLNLKRAHQEFLIKFRDLPDVCPYKTPASELAKESLESEKR 306

Query: 301 ACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV 360
           ACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV
Sbjct: 307 ACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV 366

Query: 361 EGFNDKG 367
           EGFNDKG
Sbjct: 367 EGFNDKG 373

[Close]

BLAST of Cp4.1LG03g12580 vs. ExPASy TrEMBL
Match: A0A0A0KU86 (PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G015830 PE=4 SV=1)

HSP 1 Score: 678 bits (1750), Expect = 5.77e-238
Identity = 336/367 (91.55%), Postives = 351/367 (95.64%), Query Frame = 0


Query: 1   FLTPRDWYVTPLSSNLLRGTTLWLHSNVGCKYQRKENFKTCYTLTPRASVKIVRSRPLDR 60
           FLTP DW+VT LSSNLL G+ LWLHS V  K QRKENF+T YTLTP +S+KIVRSR LDR
Sbjct: 7   FLTPTDWHVTSLSSNLLSGSPLWLHSKVDFKCQRKENFRTHYTLTPCSSIKIVRSRSLDR 66

Query: 61  HAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGYLSLPKPRSLLSMIHRYPSIFELF 120
           HAVKHNKTRFVQKLIILLLSKPKHYIP+HILSKCRGYLSLP+PRSLLSMIHRYPSIFELF
Sbjct: 67  HAVKHNKTRFVQKLIILLLSKPKHYIPLHILSKCRGYLSLPRPRSLLSMIHRYPSIFELF 126

Query: 121 SIPYPPTPLNATKLYPQLCVRLTPAAASLAKQDSNLKLVISNTLAEKLQKLLMLSSHHRI 180
           SIPYPPTPLNATKLYPQLCVRLTPAAAS+AKQDS+LK+VISN LAEKLQKLLMLSSHHRI
Sbjct: 127 SIPYPPTPLNATKLYPQLCVRLTPAAASIAKQDSDLKMVISNKLAEKLQKLLMLSSHHRI 186

Query: 181 LLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVFWDPELAKPLPCLQVS 240
           LLSKLVHLAPDLS+PPNFRSRLCNDYPEKFRTVDTSYGRALELV WDPELAKPLPC+QV 
Sbjct: 187 LLSKLVHLAPDLSLPPNFRSRLCNDYPEKFRTVDTSYGRALELVSWDPELAKPLPCIQVP 246

Query: 241 SRELIVDRPLKFNLLKLRKGLNLKRAHQEFLIKFRDLPDVCPYKTPASELAKESLESEKR 300
           SRELIVDRPLKFNLL+LRKGLNLKR HQEFLIKFRDLPDVCPYK PASELAKESLESEKR
Sbjct: 247 SRELIVDRPLKFNLLRLRKGLNLKRTHQEFLIKFRDLPDVCPYKNPASELAKESLESEKR 306

Query: 301 ACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV 360
           ACAVVREVLGMM+EKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV
Sbjct: 307 ACAVVREVLGMMVEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV 366

Query: 361 EGFNDKG 367
           EGF+DKG
Sbjct: 367 EGFDDKG 373

[Close]

BLAST of Cp4.1LG03g12580 vs. ExPASy TrEMBL
Match: A0A1S3BYB2 (protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656 GN=LOC103494529 PE=4 SV=1)

HSP 1 Score: 673 bits (1736), Expect = 7.39e-236
Identity = 338/367 (92.10%), Postives = 350/367 (95.37%), Query Frame = 0


Query: 1   FLTPRDWYVTPLSSNLLRGTTLWLHSNVGCKYQRKENFKTCYTLTPRASVKIVRSRPLDR 60
           FLTP DW+ + LSSNLL G+ LWLHS V  K QRKENF T YTLTP +S+KIVRSR LDR
Sbjct: 7   FLTPADWHAS-LSSNLLSGSPLWLHSKVDLKCQRKENFITHYTLTPCSSIKIVRSRSLDR 66

Query: 61  HAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGYLSLPKPRSLLSMIHRYPSIFELF 120
           HAVKHNKTRFVQKLIILLLSKPKHYIP+HILSKCRGYLSLP+PRSLLSMIHRYPSIFELF
Sbjct: 67  HAVKHNKTRFVQKLIILLLSKPKHYIPLHILSKCRGYLSLPRPRSLLSMIHRYPSIFELF 126

Query: 121 SIPYPPTPLNATKLYPQLCVRLTPAAASLAKQDSNLKLVISNTLAEKLQKLLMLSSHHRI 180
           SIPYPPTPLNATKLYPQLCVRLT AAAS+AKQDS+LKLVISNTLAEKLQKLLMLSSHHRI
Sbjct: 127 SIPYPPTPLNATKLYPQLCVRLTAAAASIAKQDSDLKLVISNTLAEKLQKLLMLSSHHRI 186

Query: 181 LLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVFWDPELAKPLPCLQVS 240
           LLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELV WDPELAKPLPC+QV 
Sbjct: 187 LLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVSWDPELAKPLPCIQVP 246

Query: 241 SRELIVDRPLKFNLLKLRKGLNLKRAHQEFLIKFRDLPDVCPYKTPASELAKESLESEKR 300
           SRELIVDRPLKFNLL+LRKGLNLKR HQEFLIKFRDLPDVCPYKTPASELAKESLESEKR
Sbjct: 247 SRELIVDRPLKFNLLRLRKGLNLKRTHQEFLIKFRDLPDVCPYKTPASELAKESLESEKR 306

Query: 301 ACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV 360
           ACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV
Sbjct: 307 ACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV 366

Query: 361 EGFNDKG 367
           EGF+DKG
Sbjct: 367 EGFDDKG 372

[Close]

BLAST of Cp4.1LG03g12580 vs. ExPASy TrEMBL
Match: A0A5D3D0F7 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001190 PE=4 SV=1)

HSP 1 Score: 673 bits (1736), Expect = 7.39e-236
Identity = 338/367 (92.10%), Postives = 350/367 (95.37%), Query Frame = 0


Query: 1   FLTPRDWYVTPLSSNLLRGTTLWLHSNVGCKYQRKENFKTCYTLTPRASVKIVRSRPLDR 60
           FLTP DW+ + LSSNLL G+ LWLHS V  K QRKENF T YTLTP +S+KIVRSR LDR
Sbjct: 7   FLTPADWHAS-LSSNLLSGSPLWLHSKVDLKCQRKENFITHYTLTPCSSIKIVRSRSLDR 66

Query: 61  HAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGYLSLPKPRSLLSMIHRYPSIFELF 120
           HAVKHNKTRFVQKLIILLLSKPKHYIP+HILSKCRGYLSLP+PRSLLSMIHRYPSIFELF
Sbjct: 67  HAVKHNKTRFVQKLIILLLSKPKHYIPLHILSKCRGYLSLPRPRSLLSMIHRYPSIFELF 126

Query: 121 SIPYPPTPLNATKLYPQLCVRLTPAAASLAKQDSNLKLVISNTLAEKLQKLLMLSSHHRI 180
           SIPYPPTPLNATKLYPQLCVRLT AAAS+AKQDS+LKLVISNTLAEKLQKLLMLSSHHRI
Sbjct: 127 SIPYPPTPLNATKLYPQLCVRLTAAAASIAKQDSDLKLVISNTLAEKLQKLLMLSSHHRI 186

Query: 181 LLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVFWDPELAKPLPCLQVS 240
           LLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELV WDPELAKPLPC+QV 
Sbjct: 187 LLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVSWDPELAKPLPCIQVP 246

Query: 241 SRELIVDRPLKFNLLKLRKGLNLKRAHQEFLIKFRDLPDVCPYKTPASELAKESLESEKR 300
           SRELIVDRPLKFNLL+LRKGLNLKR HQEFLIKFRDLPDVCPYKTPASELAKESLESEKR
Sbjct: 247 SRELIVDRPLKFNLLRLRKGLNLKRTHQEFLIKFRDLPDVCPYKTPASELAKESLESEKR 306

Query: 301 ACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV 360
           ACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV
Sbjct: 307 ACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSLKGQRDSVFLV 366

Query: 361 EGFNDKG 367
           EGF+DKG
Sbjct: 367 EGFDDKG 372

[Close]

BLAST of Cp4.1LG03g12580 vs. TAIR 10
Match: AT5G62990.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 451.8 bits (1161), Expect = 9.9e-127
Identity = 231/317 (72.87%), Postives = 258/317 (81.39%), Query Frame = 0


Query: 51  KIVRSRPLDRHAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGYLSLPKPRSLLSMI 110
           KIVRS  LDRH VK N+ RFVQKL  LLLSKPKHYIPI IL KCR YL +  P ++LSMI
Sbjct: 58  KIVRSPSLDRHVVKQNRVRFVQKLNTLLLSKPKHYIPIEILYKCRSYLCIENPLAILSMI 117

Query: 111 HRYPSIFELFSIPYPPTPLNATKLYPQLCVRLTPAAASLAKQDSNLKLVISNTLAEKLQK 170
            RYP+IFELF+ P P  P+NATK   QLCVRLT AA+SLA Q+ NLK  IS+ LA KLQK
Sbjct: 118 RRYPTIFELFTTPTPHLPMNATKPLSQLCVRLTSAASSLAMQELNLKSEISDKLATKLQK 177

Query: 171 LLMLSSHHRILLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVFWDPEL 230
           LLMLSSH R+LLSKLVH+APD   PPNFRSRLCNDYP+KF+TVDTSYGRALELV  DPEL
Sbjct: 178 LLMLSSHRRLLLSKLVHIAPDFGFPPNFRSRLCNDYPDKFKTVDTSYGRALELVSSDPEL 237

Query: 231 AKPLPCLQVSSRELIVDRPLKFNLLKLRKGLNLKRAHQEFLIKFRDLPDVCPYKTPASEL 290
           A  +P  +V  R LIVDRPLKF  L LR+GLNLKR HQ FLIKFR+ PDVCPYK  +  L
Sbjct: 238 ANQMPSPEV-DRGLIVDRPLKFKRLNLRRGLNLKRRHQGFLIKFRESPDVCPYKMSSDYL 297

Query: 291 AKESLESEKRACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYVSL 350
           A ES+E+EKRACAVVREVLG+ +EKRTLIDHLTHFRK+F LPNKLR +IVRHPELFYVS+
Sbjct: 298 ASESIEAEKRACAVVREVLGLTVEKRTLIDHLTHFRKEFSLPNKLRDLIVRHPELFYVSI 357

Query: 351 KGQRDSVFLVEGFNDKG 368
           KG RDSVFLVE +ND G
Sbjct: 358 KGMRDSVFLVEAYNDNG 373

[Close]

BLAST of Cp4.1LG03g12580 vs. TAIR 10
Match: AT4G01037.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 227.3 bits (578), Expect = 4.0e-59
Identity = 133/336 (39.58%), Postives = 190/336 (56.55%), Query Frame = 0


Query: 39  KTCYTLTP-RASVKIVRSRPLDRHAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGY 98
           KT   + P RA+VK  +    D    +  K + V  +  +L+S+P   + +  L K R  
Sbjct: 64  KTRVVVEPVRAAVKRRKELTFDSVVQRDKKLKLVLNIRKILVSQPDRMMSLRGLGKYRRD 123

Query: 99  LSLPKPRSLLSMIHRYPSIFELFSIPYPPTPLNATKLYPQLCVRLTPAAASLAKQDSNLK 158
           L L K R  ++++ +YP +FE+             +    L  ++T  A  L   +  ++
Sbjct: 124 LGLKKRRRFIALLRKYPGVFEI-----------VEEGAYSLRFKMTSEAERLYLDEMRIR 183

Query: 159 LVISNTLAEKLQKLLMLSSHHRILLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSY 218
             + + L  KL+KL+M+S   RILL K+ HL  DL +P  FR  +C  YP+ FR V T  
Sbjct: 184 NELEDVLVVKLRKLVMMSIDKRILLEKISHLKTDLGLPLEFRDTICQRYPQYFRVVPTPR 243

Query: 219 GRALELVFWDPELAKPLPCL--------QVSSRELIVDRPLKFNLLKLRKGLNLKRAHQE 278
           G ALEL  WDPELA     L        +   R LI+DRP KFN +KL +GLNL ++   
Sbjct: 244 GPALELTHWDPELAVSAAELSEDDNRTRESEERNLIIDRPPKFNRVKLPRGLNLSKSETR 303

Query: 279 FLIKFRDLPDVCPYKTPASELAKESLESEKRACAVVREVLGMMIEKRTLIDHLTHFRKDF 338
            + +FRD+  + PYK   S L   +LE EK AC V+ E+L +  EKRTL+DHLTHFR++F
Sbjct: 304 KISQFRDMQYISPYK-DFSHLRSGTLEKEKHACGVIHELLSLTTEKRTLVDHLTHFREEF 363

Query: 339 GLPNKLRGMIVRHPELFYVSLKGQRDSVFLVEGFND 366
               +LRGM++RHP+LFYVSLKG+RDSVFL E + +
Sbjct: 364 RFSQQLRGMLIRHPDLFYVSLKGERDSVFLREAYRN 387

[Close]

BLAST of Cp4.1LG03g12580 vs. TAIR 10
Match: AT5G48040.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 123.6 bits (309), Expect = 6.2e-28
Identity = 98/316 (31.01%), Postives = 152/316 (48.10%), Query Frame = 0


Query: 50  VKIVRSRPLDRHAVKHNKTRFVQKLIILLLSKPKHYIPIHILSKCRGYLSLPKPRSLLSM 109
           +K V+ R LD   V+    R V  L+ ++ + P   +PI  L   RG L LP+   L + 
Sbjct: 37  LKWVKDRELDAVVVREKHLRAVCNLVSVISASPDLRLPIFKLLPHRGQLGLPQELKLSAF 96

Query: 110 IHRYPSIFELFSIPYPPTPLNATKLYPQLCVRLTPAAASLAKQDSNLKLVISNTLAEKLQ 169
           I RYP+IF    + +       T +    C  LT     L  ++ ++  V    +  +L 
Sbjct: 97  IRRYPNIF----VEHCYWDSAGTSV---PCFGLTRETIDLYYEEVDVSRVNERDVLVRLC 156

Query: 170 KLLMLSSHHRILLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYG-RALELVFWDP 229
           KLLML+    + L  + HL  DL +P ++R  L   +P+ F  V  S     L+L+ WD 
Sbjct: 157 KLLMLTCERTLSLHSIDHLRWDLGLPYDYRDSLITKHPDLFSLVKLSSDLDGLKLIHWDE 216

Query: 230 ELAKPLPCLQVSSRELIVDRPLKFNLLKLRKGLNLKRAHQEFLIKFRDLPDVCPYKTPAS 289
            LA      Q+  RE + +       +K  +G  LKR   E+L +++ LP   PY   AS
Sbjct: 217 HLA----VSQMQLREDVGNDERMAFPVKFTRGFGLKRKSIEWLQEWQRLPYTSPY-VDAS 276

Query: 290 ELAKESLESEKRACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELFYV 349
            L   +  SEKR   V  E+L + I K+T   ++++ RK F LP K   +  RHP +FY+
Sbjct: 277 HLDPRTDLSEKRNVGVFHELLHLTIGKKTERKNVSNLRKPFALPQKFTKVFERHPGIFYI 336

Query: 350 SLKGQRDSVFLVEGFN 365
           S+K    +V L E ++
Sbjct: 337 SMKCDTQTVILREAYD 340

[Close]

BLAST of Cp4.1LG03g12580 vs. TAIR 10
Match: AT5G21970.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 118.2 bits (295), Expect = 2.6e-26
Identity = 91/320 (28.44%), Postives = 149/320 (46.56%), Query Frame = 0


Query: 54  RSRPLDRHAVKHNKTRFVQKLIIL---LLSKPKHYIPIHILSKCRGYLSLPKPRSLLSMI 113
           R + +    +   K +   K+I L   L  +    + +    + R  ++LPKP  +   I
Sbjct: 54  REKRVQELEIATEKWKIASKVIFLMEVLKGERDMIMTVRSFEQYRRQINLPKPHKISDFI 113

Query: 114 HRYPSIFELFSIPYPPTPLNATKLYPQLCVRLTPAAASLAKQDSNLKLVISNTLAEKLQK 173
            + P +FEL+                 L   LT     L  +   L     +  AE + +
Sbjct: 114 RKSPKLFELYK-----------DQRGVLWCGLTEGGEDLLDEHDKLLEENGDKAAEHVTR 173

Query: 174 LLMLSSHHRILLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRA-LELVFWDPE 233
            LM+S   ++ L K+VH   D  +P +FR     ++P+ F+ V    G   LELV W+P 
Sbjct: 174 CLMMSVDKKLPLDKIVHFRRDFGLPLDFRINWVYNFPQHFKVVKLGDGEEYLELVSWNPA 233

Query: 234 LAKPLPCLQVSSRELIVDRPLKFNLLKLRKGLNLKRAHQEF------LIKFRDLPDVCPY 293
            A  +  L+  +  +  D   K  +L L   +    ++++       +  F+    + PY
Sbjct: 234 WA--ITELEKKTLGITEDCEHKPGMLSLAFPMKFPPSYKKMYRYRGKIEHFQKRSYLSPY 293

Query: 294 KTPASELAKESLESEKRACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHP 353
              A  L   S E +KRA AV+ E+L   +EKR + DHLTHFR++F +P KL  + ++H 
Sbjct: 294 -ADARGLEAGSKEFDKRAIAVMHELLSFTLEKRLVTDHLTHFRREFVMPQKLMRIFLKHC 353

Query: 354 ELFYVSLKGQRDSVFLVEGF 364
            +FYVS +G+R SVFL EG+
Sbjct: 354 GIFYVSERGKRFSVFLTEGY 359

[Close]

BLAST of Cp4.1LG03g12580 vs. TAIR 10
Match: AT5G45790.2 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 114.0 bits (284), Expect = 4.9e-25
Identity = 87/318 (27.36%), Postives = 159/318 (50.00%), Query Frame = 0


Query: 54  RSRPLDRHAVKHNKTRFVQKLIILLLSKPK-HYIPIHILSKCRGYLSLPKPRSLLSMIHR 113
           R   LD+   +  K   + ++  L+ SK +  ++ + ++S+ +  + L    ++ + I +
Sbjct: 70  RDHQLDKIIPQIRKLNIILEISKLMSSKKRGPFVSLQLMSRWKNLVGLNV--NVGAFIGK 129

Query: 114 YPSIFELFSIPYPPTPLNATKLYPQLCVRLTPAAASLAKQDSNLKLVISNTLAEKLQKLL 173
           YP  FE+F+ P+             LC ++T     L  ++ N+         ++++KLL
Sbjct: 130 YPHAFEIFTHPFS----------KNLCCKITEKFKVLIDEEENVVRECEVDAVKRVKKLL 189

Query: 174 MLSSHHRILLSKLVHLAPDLSMPPNFRSRLCNDYPEKFRTVDTSYGRALELVFWDPE--- 233
           +LS H  + +  L  +  +L +P +FR  +   Y  +FR VD      LELV  D E   
Sbjct: 190 LLSKHGVLRVHALRLIRKELGLPEDFRDSILAKYSSEFRLVDL---ETLELVDRDDESLC 249

Query: 234 LAKPLPCLQVSSRELIVDRPLKFNL---LKLRKGLNLKRAHQEFLIKFRDLPDVCPYKTP 293
           +AK     +V  RE  + +  + N    + L  G  +++  +E L  ++ +P V PY   
Sbjct: 250 VAKVEEWREVEYREKWLSK-FETNYAFPIHLPTGFKIEKGFREELKNWQRVPYVKPY--D 309

Query: 294 ASELAKESLESEKRACAVVREVLGMMIEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELF 353
             E+++     EKR  AV+ E+L + +EK   ++ L HFRKD G+   +R +I++HP +F
Sbjct: 310 RKEISRGLERFEKRVVAVIHELLSLTVEKMVEVERLAHFRKDLGIEVNVREVILKHPGIF 369

Query: 354 YVSLKGQRDSVFLVEGFN 365
           YVS KG   ++FL E ++
Sbjct: 370 YVSTKGSSQTLFLREAYS 369

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g12580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B6TTV8	1.2e-60	40.66	Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=...	[more]
Q65XL5	1.2e-60	40.66	Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japon...	[more]
A0MFS5	5.6e-58	39.58	Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
Q689D6	2.1e-17	26.22	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1...	[more]
Q9ZUZ6	4.8e-17	25.79	Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=W...	[more]

BLAST of Cp4.1LG03g12580 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6582056.1	3.80e-267	78.60	Protein WHAT'S THIS FACTOR 1-like, chloroplastic, partial [Cucurbita argyrosperm...	[more]
XP_023527715.1	9.17e-262	100.00	protein WHAT'S THIS FACTOR 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022955645.1	4.67e-257	98.64	protein WHAT'S THIS FACTOR 1 [Cucurbita moschata] >XP_022955646.1 protein WHAT'S...	[more]
XP_022979770.1	2.05e-253	97.82	protein WHAT'S THIS FACTOR 1 [Cucurbita maxima] >XP_022979771.1 protein WHAT'S T...	[more]
XP_038904265.1	2.91e-243	94.01	protein WHAT'S THIS FACTOR 1, chloroplastic [Benincasa hispida] >XP_038904305.1 ...	[more]

BLAST of Cp4.1LG03g12580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GVP1	2.26e-257	98.64	protein WHAT'S THIS FACTOR 1 OS=Cucurbita moschata OX=3662 GN=LOC111457587 PE=4 ...	[more]
A0A6J1IUA5	9.93e-254	97.82	protein WHAT'S THIS FACTOR 1 OS=Cucurbita maxima OX=3661 GN=LOC111479376 PE=4 SV...	[more]
A0A0A0KU86	5.77e-238	91.55	PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G015830 PE=4 S...	[more]
A0A1S3BYB2	7.39e-236	92.10	protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656 GN=LOC103494529 PE=4...	[more]
A0A5D3D0F7	7.39e-236	92.10	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]

BLAST of Cp4.1LG03g12580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62990.1	9.9e-127	72.87	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT4G01037.1	4.0e-59	39.58	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT5G48040.1	6.2e-28	31.01	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT5G21970.1	2.6e-26	28.44	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT5G45790.2	4.9e-25	27.36	Ubiquitin carboxyl-terminal hydrolase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021099	Plant organelle RNA recognition domain	PFAM	PF11955	PORR	coord: 53..366 e-value: 3.4E-87 score: 292.4
IPR045040	PORR family	PANTHER	PTHR31476	PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC	coord: 33..368
None	No IPR available	PANTHER	PTHR31476:SF2	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN	coord: 33..368

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g12580.1	Cp4.1LG03g12580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003723	RNA binding