Cp4.1LG03g11530 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g11530
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	leucine-rich repeat extensin-like protein 6
Location	Cp4.1LG03: 10896457 .. 10896984 (-)
RNA-Seq Expression	Cp4.1LG03g11530
Synteny	Cp4.1LG03g11530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACTGCCATTTCTCTGAAACTTTTCATCTCTCTCACGGCGGTTCTCCTCAGTTTTCCGGCTGGATTTTCGTCGCTTCCGACGGCCGACCGCCGCACTCTCGCCGGCGCTAAATACCAAATCGAATGCACAATGTGCTCTGCTTGTGACAATCCCTGCGGCCAGTATCTGTCTCCACCACCTCCTCCGCCGTCTCCTCCTCCATCCATCAACTGCCCACCACCACCTTCTCCCCCCAGCTCCGGTACCTACTATTACTCTCCTCCCCCACCTCCATCTCAACCCACTTACACATACTCCTCCTCGCCGCCGCCGCCTGGCAACTACGGACCGAGTGGGTACTACCAACCGCCTCCGTACAGTAATTACCCGGCCCCCCCACCGCCGAACCCGATTGTGCCGTATTTCCCATTCTATTTTCACACTCCGCCACCGGGCTCCGCCGCTGCCGGCCGTTTGACGAACTCTTGGGCTTGCTCTGTTCTTACTGTTCCTCTGTTTTTGTTCTTGCTTGCTTTGTTTTAA

mRNA sequence

ATGGAAACTGCCATTTCTCTGAAACTTTTCATCTCTCTCACGGCGGTTCTCCTCAGTTTTCCGGCTGGATTTTCGTCGCTTCCGACGGCCGACCGCCGCACTCTCGCCGGCGCTAAATACCAAATCGAATGCACAATGTGCTCTGCTTGTGACAATCCCTGCGGCCAGTATCTGTCTCCACCACCTCCTCCGCCGTCTCCTCCTCCATCCATCAACTGCCCACCACCACCTTCTCCCCCCAGCTCCGGTACCTACTATTACTCTCCTCCCCCACCTCCATCTCAACCCACTTACACATACTCCTCCTCGCCGCCGCCGCCTGGCAACTACGGACCGAGTGGGTACTACCAACCGCCTCCGTACAGTAATTACCCGGCCCCCCCACCGCCGAACCCGATTGTGCCGTATTTCCCATTCTATTTTCACACTCCGCCACCGGGCTCCGCCGCTGCCGGCCGTTTGACGAACTCTTGGGCTTGCTCTGTTCTTACTGTTCCTCTGTTTTTGTTCTTGCTTGCTTTGTTTTAA

Coding sequence (CDS)

ATGGAAACTGCCATTTCTCTGAAACTTTTCATCTCTCTCACGGCGGTTCTCCTCAGTTTTCCGGCTGGATTTTCGTCGCTTCCGACGGCCGACCGCCGCACTCTCGCCGGCGCTAAATACCAAATCGAATGCACAATGTGCTCTGCTTGTGACAATCCCTGCGGCCAGTATCTGTCTCCACCACCTCCTCCGCCGTCTCCTCCTCCATCCATCAACTGCCCACCACCACCTTCTCCCCCCAGCTCCGGTACCTACTATTACTCTCCTCCCCCACCTCCATCTCAACCCACTTACACATACTCCTCCTCGCCGCCGCCGCCTGGCAACTACGGACCGAGTGGGTACTACCAACCGCCTCCGTACAGTAATTACCCGGCCCCCCCACCGCCGAACCCGATTGTGCCGTATTTCCCATTCTATTTTCACACTCCGCCACCGGGCTCCGCCGCTGCCGGCCGTTTGACGAACTCTTGGGCTTGCTCTGTTCTTACTGTTCCTCTGTTTTTGTTCTTGCTTGCTTTGTTTTAA

Protein sequence

METAISLKLFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSSPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF

Homology

[Close]

BLAST of Cp4.1LG03g11530 vs. ExPASy Swiss-Prot
Match: Q9T0K5 (Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=LRX3 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.8e-05
Identity = 48/104 (46.15%), Postives = 52/104 (50.00%), Query Frame = 0


Query: 53  PCGQYLSPP----PPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSSPPPPG 112
           P   + +PP    PPPPSPPP +  PPPP PP    Y   PPPPP  P   YS  PPPP 
Sbjct: 413 PAPIFSTPPTLTSPPPPSPPPPVYSPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPP 472

Query: 113 NYGPSGYYQPPPYSNYP------APPPPNPIVPYFPFYFHTPPP 147
              P   Y PPP S  P      +PPPP P  P  P Y   PPP
Sbjct: 473 PPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPPPPPVYSPPPPP 516

[Close]

BLAST of Cp4.1LG03g11530 vs. ExPASy Swiss-Prot
Match: Q9LUI1 (Leucine-rich repeat extensin-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=LRX6 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.5e-04
Identity = 53/119 (44.54%), Postives = 60/119 (50.42%), Query Frame = 0


Query: 32  RRTLAGAK----YQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYY 91
           +R+LA  K    Y I+C     C  P     SPPPPPP PPP    PPPP PP       
Sbjct: 353 QRSLAECKSFSSYPIDCA-SFGCSPP-----SPPPPPPPPPP----PPPPPPPPP----- 412

Query: 92  SPPPPPSQPTYTYSSSPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPP 147
            PPPPP  P Y Y S PPPP +  P  Y  PPP   Y  PPPP+P     P+ +  PPP
Sbjct: 413 PPPPPPPPPPYVYPSPPPPPPS--PPPYVYPPPPPPYVYPPPPSP-----PYVYPPPPP 449

[Close]

BLAST of Cp4.1LG03g11530 vs. ExPASy Swiss-Prot
Match: O65375 (Leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=LRX1 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 9.8e-04
Identity = 52/115 (45.22%), Postives = 58/115 (50.43%), Query Frame = 0


Query: 57  YLSPPPPPPSPPPSI--NCPPPP---------SPPSSGTYYYSP----PPPPS---QPTY 116
           Y SPPPPPPSPPP    + PPPP         SPP     YY P    PPPPS    P  
Sbjct: 519 YSSPPPPPPSPPPPCPESSPPPPVVYYAPVTQSPPPPSPVYYPPVTQSPPPPSPVYYPPV 578

Query: 117 TYSSSPPPPGNYGPSGYYQPPPYSNY-----PAPPPPNPIVPYFPFYFHTPPPGS 149
           T S  PP P  Y P  Y  PPP   Y     P+PPPP+P+  Y+P    +PPP S
Sbjct: 579 TNSPPPPSPVYYPPVTYSPPPPSPVYYPQVTPSPPPPSPL--YYPPVTPSPPPPS 631

[Close]

BLAST of Cp4.1LG03g11530 vs. NCBI nr
Match: XP_023526139.1 (leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 336 bits (862), Expect = 3.95e-116
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   METAISLKLFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSP 60
           METAISLKLFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSP
Sbjct: 1   METAISLKLFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSP 60

Query: 61  PPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSSPPPPGNYGPSGYYQPPP 120
           PPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSSPPPPGNYGPSGYYQPPP
Sbjct: 61  PPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSSPPPPGNYGPSGYYQPPP 120

Query: 121 YSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF 175
           YSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF
Sbjct: 121 YSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF 175

[Close]

BLAST of Cp4.1LG03g11530 vs. NCBI nr
Match: XP_022955565.1 (leucine-rich repeat extensin-like protein 6 [Cucurbita moschata])

HSP 1 Score: 333 bits (853), Expect = 9.32e-115
Identity = 173/175 (98.86%), Postives = 173/175 (98.86%), Query Frame = 0


Query: 1   METAISLKLFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSP 60
           METAISLK FISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSP
Sbjct: 1   METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSP 60

Query: 61  PPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSSPPPPGNYGPSGYYQPPP 120
           PPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSS PPPPGNYGPSGYYQPPP
Sbjct: 61  PPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSPPPPPGNYGPSGYYQPPP 120

Query: 121 YSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF 175
           YSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF
Sbjct: 121 YSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF 175

[Close]

BLAST of Cp4.1LG03g11530 vs. NCBI nr
Match: KAG6582188.1 (hypothetical protein SDJN03_22190, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 328 bits (841), Expect = 6.29e-113
Identity = 170/175 (97.14%), Postives = 172/175 (98.29%), Query Frame = 0


Query: 1   METAISLKLFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSP 60
           METAISLK F+SLTAVLLSFPAGFSSL TADRRTLAGAKYQIECTMCSACDNPCGQYLSP
Sbjct: 1   METAISLKFFVSLTAVLLSFPAGFSSLQTADRRTLAGAKYQIECTMCSACDNPCGQYLSP 60

Query: 61  PPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSSPPPPGNYGPSGYYQPPP 120
           PPPPPSPPP+INCPPPPSPPSSGTYYYSPPPPPSQPTYTYSS PPPPGNYGPSGYYQPPP
Sbjct: 61  PPPPPSPPPAINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSPPPPPGNYGPSGYYQPPP 120

Query: 121 YSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF 175
           YSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF
Sbjct: 121 YSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF 175

[Close]

BLAST of Cp4.1LG03g11530 vs. NCBI nr
Match: XP_022979944.1 (leucine-rich repeat extensin-like protein 6 [Cucurbita maxima])

HSP 1 Score: 326 bits (836), Expect = 3.64e-112
Identity = 170/175 (97.14%), Postives = 171/175 (97.71%), Query Frame = 0


Query: 1   METAISLKLFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSP 60
           METAISLK FISLTAVLLSF AGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSP
Sbjct: 1   METAISLKFFISLTAVLLSFTAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSP 60

Query: 61  PPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSSPPPPGNYGPSGYYQPPP 120
           PPPPPSPPPSI+CPPPPSPPSSGTYYYSPPPPPSQPTYTYSS PPPPGNYGPSGYYQPPP
Sbjct: 61  PPPPPSPPPSIDCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSPPPPPGNYGPSGYYQPPP 120

Query: 121 YSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF 175
           YSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLF FLLALF
Sbjct: 121 YSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFFFLLALF 175

[Close]

BLAST of Cp4.1LG03g11530 vs. NCBI nr
Match: XP_038906774.1 (leucine-rich repeat extensin-like protein 6 [Benincasa hispida])

HSP 1 Score: 256 bits (655), Expect = 1.22e-84
Identity = 145/176 (82.39%), Postives = 151/176 (85.80%), Query Frame = 0


Query: 1   METAISLKLFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSP 60
           METAISL+ FISLTAVLL FPAGFSSLP ADRR  AGAKYQIECTMCSACDNPCGQYLSP
Sbjct: 1   METAISLRFFISLTAVLLLFPAGFSSLPVADRRISAGAKYQIECTMCSACDNPCGQYLSP 60

Query: 61  PPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSSPPPPGNYGPSGYYQPPP 120
           PPPPP     +NCPPPPSPPSSGTYYY  PPPP+QPTYTYSS PPP G  G  GYYQPPP
Sbjct: 61  PPPPPP----VNCPPPPSPPSSGTYYYYSPPPPTQPTYTYSSPPPPRGING-GGYYQPPP 120

Query: 121 YSNYPAPPPPNPIVPYFPFYFHTPPPGSAAA-GRLTNSWACSVLTVPLFLFLLALF 175
           Y+NYPAPPPPNPIVPYFPFY+HTPPPGS+AA G LTNS A SVLTV LF FLL LF
Sbjct: 121 YNNYPAPPPPNPIVPYFPFYYHTPPPGSSAAVGCLTNSLAYSVLTVALFSFLLTLF 171

[Close]

BLAST of Cp4.1LG03g11530 vs. ExPASy TrEMBL
Match: A0A6J1GVF6 (leucine-rich repeat extensin-like protein 6 OS=Cucurbita moschata OX=3662 GN=LOC111457543 PE=4 SV=1)

HSP 1 Score: 333 bits (853), Expect = 4.51e-115
Identity = 173/175 (98.86%), Postives = 173/175 (98.86%), Query Frame = 0


Query: 1   METAISLKLFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSP 60
           METAISLK FISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSP
Sbjct: 1   METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSP 60

Query: 61  PPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSSPPPPGNYGPSGYYQPPP 120
           PPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSS PPPPGNYGPSGYYQPPP
Sbjct: 61  PPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSPPPPPGNYGPSGYYQPPP 120

Query: 121 YSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF 175
           YSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF
Sbjct: 121 YSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF 175

[Close]

BLAST of Cp4.1LG03g11530 vs. ExPASy TrEMBL
Match: A0A6J1IXZ9 (leucine-rich repeat extensin-like protein 6 OS=Cucurbita maxima OX=3661 GN=LOC111479480 PE=4 SV=1)

HSP 1 Score: 326 bits (836), Expect = 1.76e-112
Identity = 170/175 (97.14%), Postives = 171/175 (97.71%), Query Frame = 0


Query: 1   METAISLKLFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSP 60
           METAISLK FISLTAVLLSF AGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSP
Sbjct: 1   METAISLKFFISLTAVLLSFTAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSP 60

Query: 61  PPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSSPPPPGNYGPSGYYQPPP 120
           PPPPPSPPPSI+CPPPPSPPSSGTYYYSPPPPPSQPTYTYSS PPPPGNYGPSGYYQPPP
Sbjct: 61  PPPPPSPPPSIDCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSPPPPPGNYGPSGYYQPPP 120

Query: 121 YSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF 175
           YSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLF FLLALF
Sbjct: 121 YSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFFFLLALF 175

[Close]

BLAST of Cp4.1LG03g11530 vs. ExPASy TrEMBL
Match: A0A0A0LAN7 (Nutrient reservoir OS=Cucumis sativus OX=3659 GN=Csa_3G165630 PE=4 SV=1)

HSP 1 Score: 253 bits (645), Expect = 2.32e-83
Identity = 139/176 (78.98%), Postives = 149/176 (84.66%), Query Frame = 0


Query: 1   METAISLKLFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSP 60
           MET I L+  ISLTA+LL FP+G SSLP    R+ AGAKYQIECTMCSACDNPC QYLSP
Sbjct: 1   METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLSP 60

Query: 61  PPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSSPPPPGNYGPSGYYQPPP 120
           PPPPPSPPP +NCPPPPSPPSSGTY Y  PPPP+QP+YTYSS PPP G  GP GYYQPPP
Sbjct: 61  PPPPPSPPPPVNCPPPPSPPSSGTYDYYSPPPPAQPSYTYSSPPPPGGIIGPGGYYQPPP 120

Query: 121 YSNYPAPPPPNPIVPYFPFYFHTPPPGSAAA-GRLTNSWACSVLTVPLFLFLLALF 175
           YSNYPAPPPPNPIVPYFPF++HTPPPGS+AA  RLTNS  CSVLTV LF FLLALF
Sbjct: 121 YSNYPAPPPPNPIVPYFPFFYHTPPPGSSAAVPRLTNSLPCSVLTVALFSFLLALF 176

[Close]

BLAST of Cp4.1LG03g11530 vs. ExPASy TrEMBL
Match: A0A5A7U5R9 (Nutrient reservoir OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G007810 PE=4 SV=1)

HSP 1 Score: 250 bits (638), Expect = 2.80e-82
Identity = 139/177 (78.53%), Postives = 149/177 (84.18%), Query Frame = 0


Query: 1   METAISLKLFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSP 60
           ME  ISL++ ISLT +LL      SSLP    R+ AGAKYQIECTMCSACDNPCGQYLSP
Sbjct: 1   MEAPISLQILISLTPLLLLLLPRTSSLPVFHPRSSAGAKYQIECTMCSACDNPCGQYLSP 60

Query: 61  PPPPPSPPPSINCPPPPSPPSSGTY-YYSPPPPPSQPTYTYSSSPPPPGNYGPSGYYQPP 120
           PPPPPSPPP +NCPPPPSPP+SGTY YYSPPPPP+QPTYTYSS PPP G  GP GYYQPP
Sbjct: 61  PPPPPSPPPPVNCPPPPSPPTSGTYDYYSPPPPPAQPTYTYSSPPPPRGIIGPGGYYQPP 120

Query: 121 PYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAA-GRLTNSWACSVLTVPLFLFLLALF 175
           PY+NYPAPPPPNPIVPYFPFY+HTPPPGS+AA GRLTNS  CSVLTV LF FLL LF
Sbjct: 121 PYNNYPAPPPPNPIVPYFPFYYHTPPPGSSAAVGRLTNSLPCSVLTVALFSFLLVLF 177

[Close]

BLAST of Cp4.1LG03g11530 vs. ExPASy TrEMBL
Match: A0A6J1C7N8 (leucine-rich repeat extensin-like protein 3 OS=Momordica charantia OX=3673 GN=LOC111009142 PE=4 SV=1)

HSP 1 Score: 242 bits (618), Expect = 3.00e-79
Identity = 135/178 (75.84%), Postives = 142/178 (79.78%), Query Frame = 0


Query: 1   METAISLKLFISLTAVLLSFPAGFSSLPTADRRTLAGA---KYQIECTMCSACDNPCGQY 60
           ME    L+  + L AVLL FPA   SLP  DRRT AGA   KYQIECTMCSACDNPCGQY
Sbjct: 1   MENGAPLRFLLPLAAVLLIFPATLWSLPATDRRTSAGAVSSKYQIECTMCSACDNPCGQY 60

Query: 61  LSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSSPPPPGNYGPSGYYQ 120
           LSPPPPPPSPPP +NCPPPPSPPSSGTYYY  PPPP+QPTYTYSS PPP G  G  GYYQ
Sbjct: 61  LSPPPPPPSPPPPVNCPPPPSPPSSGTYYYYSPPPPAQPTYTYSSPPPPRGIIG--GYYQ 120

Query: 121 PPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF 175
           PPPYSNYPAPPPPNPIVPYFPFY+HTPPPGS+AA  LT + ACSV T  LF  LLALF
Sbjct: 121 PPPYSNYPAPPPPNPIVPYFPFYYHTPPPGSSAAAHLTATSACSVFTATLFTLLLALF 176

[Close]

BLAST of Cp4.1LG03g11530 vs. TAIR 10
Match: AT5G49280.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-26
Identity = 80/138 (57.97%), Postives = 90/138 (65.22%), Query Frame = 0


Query: 42  IECTMCSACDNPCGQYLSPPPPPPSPPPS---INCPPPPSPPSSG---TYYYSPPPPPSQ 101
           + CTMCS+CDNPC    S PPPP  PPPS     CPPPPSPPSSG   +YYY   PPPSQ
Sbjct: 31  VSCTMCSSCDNPCSPVQSSPPPPSPPPPSTPTTACPPPPSPPSSGGGSSYYY---PPPSQ 90

Query: 102 PTYTYSSSPPPPGNYGPSGYYQPPPYS-NYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRL 161
                 S  PPP   G  GYY PPPYS NYP PPPPNPIVPYFPFY+HTPPPGS  + R 
Sbjct: 91  S--GGGSKYPPPYGGGGQGYYYPPPYSGNYPTPPPPNPIVPYFPFYYHTPPPGS-GSDRF 150

Query: 162 TNSWACSVLTVPLFLFLL 173
            +S++       +FL L+
Sbjct: 151 MSSYSIIFALFAVFLCLV 162

[Close]

BLAST of Cp4.1LG03g11530 vs. TAIR 10
Match: AT3G06750.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-21
Identity = 69/126 (54.76%), Postives = 78/126 (61.90%), Query Frame = 0


Query: 42  IECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYS 101
           + CTMCS+CDNPC    +P P   SPPP    PPP S    G+YYYSPPPP S     Y 
Sbjct: 30  VSCTMCSSCDNPC----NPVPSSYSPPP----PPPSSSGGGGSYYYSPPPPSSSGGVKY- 89

Query: 102 SSPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACS 161
             PPP G  G  GYY PP Y NY  PPPPNPIVPYFPFY+HTPP G + + RL NS   +
Sbjct: 90  --PPPYGGDGYGGYYPPPYYGNYGTPPPPNPIVPYFPFYYHTPPQGYSGSARLQNSLLFA 144

Query: 162 VLTVPL 168
           +  V L
Sbjct: 150 LFAVLL 144

[Close]

BLAST of Cp4.1LG03g11530 vs. TAIR 10
Match: AT4G16140.1 (proline-rich family protein )

HSP 1 Score: 95.5 bits (236), Expect = 4.5e-20
Identity = 68/127 (53.54%), Postives = 76/127 (59.84%), Query Frame = 0


Query: 34  TLAGAKYQIECTMCSACDNPCGQYLSPPPPP--PSPPP----SINCPPPPSPPSSGTYYY 93
           TL       +CTMC++CDNPC    SPPPPP  PSPPP    +  CPPPPS    G YYY
Sbjct: 21  TLTSPSQIADCTMCTSCDNPCQPNPSPPPPPSNPSPPPPSPTTTACPPPPSSSGGGPYYY 80

Query: 94  SPPPPPSQPTYTYSSSPPPPGNYGPSGYYQPPPYS--NYPAPPPPNPIVPYFPFYFHTPP 153
            PP   S      S  PPP  + G  GYY PPP S  NYP  PPPNPIVPYFPFY++ PP
Sbjct: 81  YPPASQSG-----SYRPPPSSSSG--GYYYPPPKSGGNYPYTPPPNPIVPYFPFYYYNPP 140

[Close]

BLAST of Cp4.1LG03g11530 vs. TAIR 10
Match: AT4G13340.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.3e-06
Identity = 48/104 (46.15%), Postives = 52/104 (50.00%), Query Frame = 0


Query: 53  PCGQYLSPP----PPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSSPPPPG 112
           P   + +PP    PPPPSPPP +  PPPP PP    Y   PPPPP  P   YS  PPPP 
Sbjct: 413 PAPIFSTPPTLTSPPPPSPPPPVYSPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPP 472

Query: 113 NYGPSGYYQPPPYSNYP------APPPPNPIVPYFPFYFHTPPP 147
              P   Y PPP S  P      +PPPP P  P  P Y   PPP
Sbjct: 473 PPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPPPPPVYSPPPPP 516

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BLAST of Cp4.1LG03g11530 vs. TAIR 10
Match: AT3G22800.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.1e-05
Identity = 53/119 (44.54%), Postives = 60/119 (50.42%), Query Frame = 0


Query: 32  RRTLAGAK----YQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYY 91
           +R+LA  K    Y I+C     C  P     SPPPPPP PPP    PPPP PP       
Sbjct: 353 QRSLAECKSFSSYPIDCA-SFGCSPP-----SPPPPPPPPPP----PPPPPPPPP----- 412

Query: 92  SPPPPPSQPTYTYSSSPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPP 147
            PPPPP  P Y Y S PPPP +  P  Y  PPP   Y  PPPP+P     P+ +  PPP
Sbjct: 413 PPPPPPPPPPYVYPSPPPPPPS--PPPYVYPPPPPPYVYPPPPSP-----PYVYPPPPP 449

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g11530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T0K5	1.8e-05	46.15	Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
Q9LUI1	1.5e-04	44.54	Leucine-rich repeat extensin-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
O65375	9.8e-04	45.22	Leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]

BLAST of Cp4.1LG03g11530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023526139.1	3.95e-116	100.00	leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo]	[more]
XP_022955565.1	9.32e-115	98.86	leucine-rich repeat extensin-like protein 6 [Cucurbita moschata]	[more]
KAG6582188.1	6.29e-113	97.14	hypothetical protein SDJN03_22190, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022979944.1	3.64e-112	97.14	leucine-rich repeat extensin-like protein 6 [Cucurbita maxima]	[more]
XP_038906774.1	1.22e-84	82.39	leucine-rich repeat extensin-like protein 6 [Benincasa hispida]	[more]

BLAST of Cp4.1LG03g11530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GVF6	4.51e-115	98.86	leucine-rich repeat extensin-like protein 6 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1IXZ9	1.76e-112	97.14	leucine-rich repeat extensin-like protein 6 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A0A0LAN7	2.32e-83	78.98	Nutrient reservoir OS=Cucumis sativus OX=3659 GN=Csa_3G165630 PE=4 SV=1	[more]
A0A5A7U5R9	2.80e-82	78.53	Nutrient reservoir OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G0...	[more]
A0A6J1C7N8	3.00e-79	75.84	leucine-rich repeat extensin-like protein 3 OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of Cp4.1LG03g11530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49280.1	1.1e-26	57.97	hydroxyproline-rich glycoprotein family protein	[more]
AT3G06750.1	1.4e-21	54.76	hydroxyproline-rich glycoprotein family protein	[more]
AT4G16140.1	4.5e-20	53.54	proline-rich family protein	[more]
AT4G13340.1	1.3e-06	46.15	Leucine-rich repeat (LRR) family protein	[more]
AT3G22800.1	1.1e-05	44.54	Leucine-rich repeat (LRR) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 89..105 score: 55.29 coord: 56..77 score: 40.91 coord: 115..132 score: 41.11
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..112
None	No IPR available	PANTHER	PTHR37702	PROLINE-RICH FAMILY PROTEIN	coord: 24..170
None	No IPR available	PANTHER	PTHR37702:SF8	RESERVOIR, PUTATIVE-RELATED	coord: 24..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g11530.1	Cp4.1LG03g11530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane