Cp4.1LG03g10600 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g10600
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Ferredoxin
Location	Cp4.1LG03: 11507386 .. 11507829 (-)
RNA-Seq Expression	Cp4.1LG03g10600
Synteny	Cp4.1LG03g10600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACTCTTCATTTTGTGCCATCCGCTTTCTCTCTACCAAAACAAAAGCAACCCACCAAGCTTTCCTCAGTCTTCAAGCTCAGACCCACAACCCAGATAGGCTGCTCACAGCGGCGCTTGGTGGTCCGGTCGTACAAAGTGGTGATCGAGCACGAGGGGCAGACCACAGAGCTGGAGGTGGATGCCGACGAGAGTATATTGGACAGCGCATTGGACAAAGGGTTAGACATTCCTCACGATTGTAAGCTTGGGGTGTGCATGACTTGCCCTGCTCGCCTTGTCAGTGGCGCCGTGGACCAGAGCGAAGGCATGCTGAGCGATGATGTTGTGGAGAAAGGGTATTCGCTTCTGTGTGTGGCTTATCCCCGCTCAGACTGCCACATCCAAACCATCCCTGAGGAGGAATTGTTGGCACTTCAATTAGCCACAGCTAATGACTGA

mRNA sequence

ATGGCAACTCTTCATTTTGTGCCATCCGCTTTCTCTCTACCAAAACAAAAGCAACCCACCAAGCTTTCCTCAGTCTTCAAGCTCAGACCCACAACCCAGATAGGCTGCTCACAGCGGCGCTTGGTGGTCCGGTCGTACAAAGTGGTGATCGAGCACGAGGGGCAGACCACAGAGCTGGAGGTGGATGCCGACGAGAGTATATTGGACAGCGCATTGGACAAAGGGTTAGACATTCCTCACGATTGTAAGCTTGGGGTGTGCATGACTTGCCCTGCTCGCCTTGTCAGTGGCGCCGTGGACCAGAGCGAAGGCATGCTGAGCGATGATGTTGTGGAGAAAGGGTATTCGCTTCTGTGTGTGGCTTATCCCCGCTCAGACTGCCACATCCAAACCATCCCTGAGGAGGAATTGTTGGCACTTCAATTAGCCACAGCTAATGACTGA

Coding sequence (CDS)

ATGGCAACTCTTCATTTTGTGCCATCCGCTTTCTCTCTACCAAAACAAAAGCAACCCACCAAGCTTTCCTCAGTCTTCAAGCTCAGACCCACAACCCAGATAGGCTGCTCACAGCGGCGCTTGGTGGTCCGGTCGTACAAAGTGGTGATCGAGCACGAGGGGCAGACCACAGAGCTGGAGGTGGATGCCGACGAGAGTATATTGGACAGCGCATTGGACAAAGGGTTAGACATTCCTCACGATTGTAAGCTTGGGGTGTGCATGACTTGCCCTGCTCGCCTTGTCAGTGGCGCCGTGGACCAGAGCGAAGGCATGCTGAGCGATGATGTTGTGGAGAAAGGGTATTCGCTTCTGTGTGTGGCTTATCCCCGCTCAGACTGCCACATCCAAACCATCCCTGAGGAGGAATTGTTGGCACTTCAATTAGCCACAGCTAATGACTGA

Protein sequence

MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIGCSQRRLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND

Homology

[Close]

BLAST of Cp4.1LG03g10600 vs. ExPASy Swiss-Prot
Match: O23344 (Ferredoxin C 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FDC1 PE=1 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.3e-44
Identity = 91/146 (62.33%), Postives = 109/146 (74.66%), Query Frame = 0


Query: 9   SAFSLPKQKQPTKLSSVFKLRPTTQIGCSQR-------RLVVRSYKVVIEHEGQTTELEV 68
           S  SLPK       S  F LR  T    + R       R++ R+YKVV+EH+G+TTELEV
Sbjct: 11  STISLPKPYLSNSFS--FPLRNATLSTTTNRRNFLTTGRIIARAYKVVVEHDGKTTELEV 70

Query: 69  DADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCVA 128
           + DE+IL  ALD GLD+P+DC LGVCMTCPA+LV+G VDQS GMLSDDVVE+GY+LLC +
Sbjct: 71  EPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVDQSGGMLSDDVVERGYTLLCAS 130

Query: 129 YPRSDCHIQTIPEEELLALQLATAND 148
           YP SDCHI+ IPEEELL+LQLATAND
Sbjct: 131 YPTSDCHIKMIPEEELLSLQLATAND 154

[Close]

BLAST of Cp4.1LG03g10600 vs. ExPASy Swiss-Prot
Match: P00252 (Ferredoxin-1 OS=Desmonostoc muscorum OX=1179 PE=1 SV=2)

HSP 1 Score: 102.1 bits (253), Expect = 5.7e-21
Identity = 50/94 (53.19%), Postives = 65/94 (69.15%), Query Frame = 0


Query: 46  YKV-VIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQS-E 105
           YKV +++ EG  T ++V  DE ILD A D+GLD+P+ C+ G C TC  ++VSG VDQS +
Sbjct: 5   YKVTLVDQEGTETTIDVPDDEYILDIAEDQGLDLPYSCRAGACSTCAGKIVSGTVDQSDQ 64

Query: 106 GMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEEL 138
             L DD +EKGY L CVAYP SD  I+T  EE+L
Sbjct: 65  SFLDDDQIEKGYVLTCVAYPTSDLKIETHKEEDL 98

[Close]

BLAST of Cp4.1LG03g10600 vs. ExPASy Swiss-Prot
Match: P08451 (Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=petF2 PE=3 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 7.4e-21
Identity = 48/98 (48.98%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 45  SYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEG 104
           +Y+V + ++GQ+     D+D+S+LDSA   G+D+P  C  GVC TC AR++SG VDQ + 
Sbjct: 3   TYQVEVIYQGQSQTFTADSDQSVLDSAQAAGVDLPASCLTGVCTTCAARILSGEVDQPDA 62

Query: 105 M-LSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQ 142
           M +  +  ++GY+LLCVAYPRSD  I+T  E+EL ALQ
Sbjct: 63  MGVGPEPAKQGYTLLCVAYPRSDLKIETHKEDELYALQ 100

[Close]

BLAST of Cp4.1LG03g10600 vs. ExPASy Swiss-Prot
Match: P00248 (Ferredoxin OS=Mastigocladus laminosus OX=83541 GN=petF PE=1 SV=2)

HSP 1 Score: 100.1 bits (248), Expect = 2.1e-20
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 45  SYKVVI--EHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQS 104
           +YKV +  E EG    +EV  D+ ILD+A + G+D+P+ C+ G C TC  +L+SG VDQS
Sbjct: 3   TYKVTLINEAEGLNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQS 62

Query: 105 -EGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEEL 138
            +  L DD +E GY L CVAYP SDC I+T  EEEL
Sbjct: 63  DQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 98

[Close]

BLAST of Cp4.1LG03g10600 vs. ExPASy Swiss-Prot
Match: P0A3D0 (Ferredoxin-1 OS=Synechococcus elongatus OX=32046 GN=petF1 PE=3 SV=2)

HSP 1 Score: 100.1 bits (248), Expect = 2.1e-20
Identity = 49/95 (51.58%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 45  SYKV-VIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQS- 104
           +YKV ++  +G  T ++V  DE ILD A ++GLD+P  C+ G C TC  +L+ G VDQS 
Sbjct: 3   TYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSD 62

Query: 105 EGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEEL 138
           +  L DD +EKG+ L CVAYPRSDC I T  EEEL
Sbjct: 63  QSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97

[Close]

BLAST of Cp4.1LG03g10600 vs. NCBI nr
Match: XP_023526556.1 (uncharacterized protein LOC111790026 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295 bits (754), Expect = 1.41e-100
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIGCSQRRLVVRSYKVVIEHEGQTTELE 60
           MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIGCSQRRLVVRSYKVVIEHEGQTTELE
Sbjct: 1   MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIGCSQRRLVVRSYKVVIEHEGQTTELE 60

Query: 61  VDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCV 120
           VDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCV
Sbjct: 61  VDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCV 120

Query: 121 AYPRSDCHIQTIPEEELLALQLATAND 147
           AYPRSDCHIQTIPEEELLALQLATAND
Sbjct: 121 AYPRSDCHIQTIPEEELLALQLATAND 147

[Close]

BLAST of Cp4.1LG03g10600 vs. NCBI nr
Match: XP_022956084.1 (uncharacterized protein LOC111457884 [Cucurbita moschata] >KAG7018707.1 petF2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 294 bits (752), Expect = 2.84e-100
Identity = 146/147 (99.32%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIGCSQRRLVVRSYKVVIEHEGQTTELE 60
           MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQ+GCSQRRLVVRSYKVVIEHEGQTTELE
Sbjct: 1   MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQLGCSQRRLVVRSYKVVIEHEGQTTELE 60

Query: 61  VDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCV 120
           VDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCV
Sbjct: 61  VDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCV 120

Query: 121 AYPRSDCHIQTIPEEELLALQLATAND 147
           AYPRSDCHIQTIPEEELLALQLATAND
Sbjct: 121 AYPRSDCHIQTIPEEELLALQLATAND 147

[Close]

BLAST of Cp4.1LG03g10600 vs. NCBI nr
Match: XP_022979429.1 (uncharacterized protein LOC111479154 [Cucurbita maxima])

HSP 1 Score: 290 bits (741), Expect = 1.90e-98
Identity = 145/147 (98.64%), Postives = 146/147 (99.32%), Query Frame = 0


Query: 1   MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIGCSQRRLVVRSYKVVIEHEGQTTELE 60
           MATLHFVPSAFSLPKQKQPTKLSSVFKLR TTQIGCSQRRLVVRSYKVVIEHEGQTTELE
Sbjct: 11  MATLHFVPSAFSLPKQKQPTKLSSVFKLRQTTQIGCSQRRLVVRSYKVVIEHEGQTTELE 70

Query: 61  VDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCV 120
           VDADESIL+SALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCV
Sbjct: 71  VDADESILNSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCV 130

Query: 121 AYPRSDCHIQTIPEEELLALQLATAND 147
           AYPRSDCHIQTIPEEELLALQLATAND
Sbjct: 131 AYPRSDCHIQTIPEEELLALQLATAND 157

[Close]

BLAST of Cp4.1LG03g10600 vs. NCBI nr
Match: KAG6582296.1 (Ferredoxin C 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 291 bits (746), Expect = 2.11e-97
Identity = 146/147 (99.32%), Postives = 146/147 (99.32%), Query Frame = 0


Query: 1   MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIGCSQRRLVVRSYKVVIEHEGQTTELE 60
           MATLHFVPSAFSLPKQKQPTKLSSVFKLR TTQIGCSQRRLVVRSYKVVIEHEGQTTELE
Sbjct: 133 MATLHFVPSAFSLPKQKQPTKLSSVFKLRTTTQIGCSQRRLVVRSYKVVIEHEGQTTELE 192

Query: 61  VDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCV 120
           VDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCV
Sbjct: 193 VDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCV 252

Query: 121 AYPRSDCHIQTIPEEELLALQLATAND 147
           AYPRSDCHIQTIPEEELLALQLATAND
Sbjct: 253 AYPRSDCHIQTIPEEELLALQLATAND 279

[Close]

BLAST of Cp4.1LG03g10600 vs. NCBI nr
Match: XP_004134137.1 (ferredoxin C 1, chloroplastic [Cucumis sativus] >KGN56985.1 hypothetical protein Csa_010907 [Cucumis sativus])

HSP 1 Score: 263 bits (671), Expect = 5.77e-88
Identity = 133/147 (90.48%), Postives = 137/147 (93.20%), Query Frame = 0


Query: 1   MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIGCSQRRLVVRSYKVVIEHEGQTTELE 60
           MATLHFVPSAFSLPKQKQP KLSSV   RPTTQI CS+RRLVVRSYKVVIEHEGQTTELE
Sbjct: 1   MATLHFVPSAFSLPKQKQPIKLSSV---RPTTQISCSRRRLVVRSYKVVIEHEGQTTELE 60

Query: 61  VDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCV 120
           VD DESIL SALD GL+IPHDCKLGVCMTCPARLVSG VDQSEGMLSDDVV +GYSLLCV
Sbjct: 61  VDPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVAQGYSLLCV 120

Query: 121 AYPRSDCHIQTIPEEELLALQLATAND 147
           AYPRSDCHI+TIPEEELLALQLATAND
Sbjct: 121 AYPRSDCHIKTIPEEELLALQLATAND 144

[Close]

BLAST of Cp4.1LG03g10600 vs. ExPASy TrEMBL
Match: A0A6J1GY17 (Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111457884 PE=3 SV=1)

HSP 1 Score: 294 bits (752), Expect = 1.37e-100
Identity = 146/147 (99.32%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIGCSQRRLVVRSYKVVIEHEGQTTELE 60
           MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQ+GCSQRRLVVRSYKVVIEHEGQTTELE
Sbjct: 1   MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQLGCSQRRLVVRSYKVVIEHEGQTTELE 60

Query: 61  VDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCV 120
           VDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCV
Sbjct: 61  VDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCV 120

Query: 121 AYPRSDCHIQTIPEEELLALQLATAND 147
           AYPRSDCHIQTIPEEELLALQLATAND
Sbjct: 121 AYPRSDCHIQTIPEEELLALQLATAND 147

[Close]

BLAST of Cp4.1LG03g10600 vs. ExPASy TrEMBL
Match: A0A6J1IWL8 (Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111479154 PE=3 SV=1)

HSP 1 Score: 290 bits (741), Expect = 9.22e-99
Identity = 145/147 (98.64%), Postives = 146/147 (99.32%), Query Frame = 0


Query: 1   MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIGCSQRRLVVRSYKVVIEHEGQTTELE 60
           MATLHFVPSAFSLPKQKQPTKLSSVFKLR TTQIGCSQRRLVVRSYKVVIEHEGQTTELE
Sbjct: 11  MATLHFVPSAFSLPKQKQPTKLSSVFKLRQTTQIGCSQRRLVVRSYKVVIEHEGQTTELE 70

Query: 61  VDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCV 120
           VDADESIL+SALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCV
Sbjct: 71  VDADESILNSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCV 130

Query: 121 AYPRSDCHIQTIPEEELLALQLATAND 147
           AYPRSDCHIQTIPEEELLALQLATAND
Sbjct: 131 AYPRSDCHIQTIPEEELLALQLATAND 157

[Close]

BLAST of Cp4.1LG03g10600 vs. ExPASy TrEMBL
Match: A0A0A0L4U6 (Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_3G146700 PE=3 SV=1)

HSP 1 Score: 263 bits (671), Expect = 2.80e-88
Identity = 133/147 (90.48%), Postives = 137/147 (93.20%), Query Frame = 0


Query: 1   MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIGCSQRRLVVRSYKVVIEHEGQTTELE 60
           MATLHFVPSAFSLPKQKQP KLSSV   RPTTQI CS+RRLVVRSYKVVIEHEGQTTELE
Sbjct: 1   MATLHFVPSAFSLPKQKQPIKLSSV---RPTTQISCSRRRLVVRSYKVVIEHEGQTTELE 60

Query: 61  VDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCV 120
           VD DESIL SALD GL+IPHDCKLGVCMTCPARLVSG VDQSEGMLSDDVV +GYSLLCV
Sbjct: 61  VDPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVAQGYSLLCV 120

Query: 121 AYPRSDCHIQTIPEEELLALQLATAND 147
           AYPRSDCHI+TIPEEELLALQLATAND
Sbjct: 121 AYPRSDCHIKTIPEEELLALQLATAND 144

[Close]

BLAST of Cp4.1LG03g10600 vs. ExPASy TrEMBL
Match: A0A5D3D1U0 (Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00400 PE=3 SV=1)

HSP 1 Score: 262 bits (669), Expect = 5.64e-88
Identity = 132/147 (89.80%), Postives = 137/147 (93.20%), Query Frame = 0


Query: 1   MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIGCSQRRLVVRSYKVVIEHEGQTTELE 60
           MATLHFVPSAFSLPKQKQP KLSSV   +PTT I CS+RRLVVRSYKVVIEHEGQTTELE
Sbjct: 1   MATLHFVPSAFSLPKQKQPIKLSSV---KPTTHISCSRRRLVVRSYKVVIEHEGQTTELE 60

Query: 61  VDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCV 120
           VD DESIL SALD GL+IPHDCKLGVCMTCPARLVSG VDQSEGMLSDDVVE+GYSLLCV
Sbjct: 61  VDPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLCV 120

Query: 121 AYPRSDCHIQTIPEEELLALQLATAND 147
           AYPRSDCHI+TIPEEELLALQLATAND
Sbjct: 121 AYPRSDCHIKTIPEEELLALQLATAND 144

[Close]

BLAST of Cp4.1LG03g10600 vs. ExPASy TrEMBL
Match: A0A1S3AX36 (Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103483712 PE=3 SV=1)

HSP 1 Score: 262 bits (669), Expect = 1.85e-87
Identity = 132/147 (89.80%), Postives = 137/147 (93.20%), Query Frame = 0


Query: 1   MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIGCSQRRLVVRSYKVVIEHEGQTTELE 60
           MATLHFVPSAFSLPKQKQP KLSSV   +PTT I CS+RRLVVRSYKVVIEHEGQTTELE
Sbjct: 36  MATLHFVPSAFSLPKQKQPIKLSSV---KPTTHISCSRRRLVVRSYKVVIEHEGQTTELE 95

Query: 61  VDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCV 120
           VD DESIL SALD GL+IPHDCKLGVCMTCPARLVSG VDQSEGMLSDDVVE+GYSLLCV
Sbjct: 96  VDPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLCV 155

Query: 121 AYPRSDCHIQTIPEEELLALQLATAND 147
           AYPRSDCHI+TIPEEELLALQLATAND
Sbjct: 156 AYPRSDCHIKTIPEEELLALQLATAND 179

[Close]

BLAST of Cp4.1LG03g10600 vs. TAIR 10
Match: AT4G14890.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 180.6 bits (457), Expect = 8.9e-46
Identity = 91/146 (62.33%), Postives = 109/146 (74.66%), Query Frame = 0


Query: 9   SAFSLPKQKQPTKLSSVFKLRPTTQIGCSQR-------RLVVRSYKVVIEHEGQTTELEV 68
           S  SLPK       S  F LR  T    + R       R++ R+YKVV+EH+G+TTELEV
Sbjct: 11  STISLPKPYLSNSFS--FPLRNATLSTTTNRRNFLTTGRIIARAYKVVVEHDGKTTELEV 70

Query: 69  DADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCVA 128
           + DE+IL  ALD GLD+P+DC LGVCMTCPA+LV+G VDQS GMLSDDVVE+GY+LLC +
Sbjct: 71  EPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVDQSGGMLSDDVVERGYTLLCAS 130

Query: 129 YPRSDCHIQTIPEEELLALQLATAND 148
           YP SDCHI+ IPEEELL+LQLATAND
Sbjct: 131 YPTSDCHIKMIPEEELLSLQLATAND 154

[Close]

BLAST of Cp4.1LG03g10600 vs. TAIR 10
Match: AT2G27510.1 (ferredoxin 3 )

HSP 1 Score: 97.4 bits (241), Expect = 9.9e-21
Identity = 49/94 (52.13%), Postives = 64/94 (68.09%), Query Frame = 0


Query: 46  YKV-VIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEG 105
           YKV ++  +GQ  E EV  D+ ILD+A + G+D+P+ C+ G C TC  ++VSG VDQS+G
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 106 -MLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEEL 138
             L D  +EKGY L CVAYP+SDC I T  E EL
Sbjct: 121 SFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154

[Close]

BLAST of Cp4.1LG03g10600 vs. TAIR 10
Match: AT1G10960.1 (ferredoxin 1 )

HSP 1 Score: 85.1 bits (209), Expect = 5.1e-17
Identity = 53/142 (37.32%), Postives = 82/142 (57.75%), Query Frame = 0


Query: 7   VPSAFSLPKQKQPTKL--------SSVFKLRPTTQIGCSQRRLVVRSYKV-VIEHEGQTT 66
           + S   L +Q+ P  L         S+F L+ +T  G   R   + +YKV  I  EG+  
Sbjct: 10  IVSTSFLRRQQTPISLRSLPFANTQSLFGLKSSTARG--GRVTAMATYKVKFITPEGE-Q 69

Query: 67  ELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQS-EGMLSDDVVEKGYS 126
           E+E + D  +LD+A + GLD+P+ C+ G C +C  ++VSG++DQS +  L D+ + +GY 
Sbjct: 70  EVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYV 129

Query: 127 LLCVAYPRSDCHIQTIPEEELL 139
           L CVAYP SD  I+T  EE ++
Sbjct: 130 LTCVAYPTSDVVIETHKEEAIM 148

[Close]

BLAST of Cp4.1LG03g10600 vs. TAIR 10
Match: AT5G10000.1 (ferredoxin 4 )

HSP 1 Score: 85.1 bits (209), Expect = 5.1e-17
Identity = 49/128 (38.28%), Postives = 72/128 (56.25%), Query Frame = 0


Query: 19  PTKLSSVFKLRPTTQIGCSQRR------LVVRSYKV-VIEHEGQTTELEVDADESILDSA 78
           P++     +L  TT  G S  R          S KV +I  EG+  E+E + D  IL+SA
Sbjct: 21  PSQAQLTTRLNNTTYFGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESA 80

Query: 79  LDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEG-MLSDDVVEKGYSLLCVAYPRSDCHIQ 138
            + GL++P+ C+ G C TC  +LVSG VDQS G  L ++ ++KGY L C+A P  DC + 
Sbjct: 81  ENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVY 140

[Close]

BLAST of Cp4.1LG03g10600 vs. TAIR 10
Match: AT1G60950.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 83.2 bits (204), Expect = 1.9e-16
Identity = 47/117 (40.17%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 24  SVFKLRPTTQIGCSQRRLVVRSYKV-VIEHEGQTTELEVDADESILDSALDKGLDIPHDC 83
           S+F L+  T  G   R   + +YKV  I  EG+  E+E D D  +LD+A + G+D+P+ C
Sbjct: 35  SLFGLKSGTARG--GRVTAMATYKVKFITPEGE-LEVECDDDVYVLDAAEEAGIDLPYSC 94

Query: 84  KLGVCMTCPARLVSGAVDQS-EGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELL 139
           + G C +C  ++VSG+VDQS +  L D+ + +G+ L C AYP SD  I+T  EE+++
Sbjct: 95  RAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDIV 148

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g10600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23344	1.3e-44	62.33	Ferredoxin C 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FDC1 PE=1 SV=1	[more]
P00252	5.7e-21	53.19	Ferredoxin-1 OS=Desmonostoc muscorum OX=1179 PE=1 SV=2	[more]
P08451	7.4e-21	48.98	Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) O...	[more]
P00248	2.1e-20	51.04	Ferredoxin OS=Mastigocladus laminosus OX=83541 GN=petF PE=1 SV=2	[more]
P0A3D0	2.1e-20	51.58	Ferredoxin-1 OS=Synechococcus elongatus OX=32046 GN=petF1 PE=3 SV=2	[more]

BLAST of Cp4.1LG03g10600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023526556.1	1.41e-100	100.00	uncharacterized protein LOC111790026 [Cucurbita pepo subsp. pepo]	[more]
XP_022956084.1	2.84e-100	99.32	uncharacterized protein LOC111457884 [Cucurbita moschata] >KAG7018707.1 petF2, p...	[more]
XP_022979429.1	1.90e-98	98.64	uncharacterized protein LOC111479154 [Cucurbita maxima]	[more]
KAG6582296.1	2.11e-97	99.32	Ferredoxin C 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_004134137.1	5.77e-88	90.48	ferredoxin C 1, chloroplastic [Cucumis sativus] >KGN56985.1 hypothetical protein...	[more]

BLAST of Cp4.1LG03g10600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GY17	1.37e-100	99.32	Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111457884 PE=3 SV=1	[more]
A0A6J1IWL8	9.22e-99	98.64	Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111479154 PE=3 SV=1	[more]
A0A0A0L4U6	2.80e-88	90.48	Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_3G146700 PE=3 SV=1	[more]
A0A5D3D1U0	5.64e-88	89.80	Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00400 PE=...	[more]
A0A1S3AX36	1.85e-87	89.80	Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103483712 PE=3 SV=1	[more]

BLAST of Cp4.1LG03g10600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14890.1	8.9e-46	62.33	2Fe-2S ferredoxin-like superfamily protein	[more]
AT2G27510.1	9.9e-21	52.13	ferredoxin 3	[more]
AT1G10960.1	5.1e-17	37.32	ferredoxin 1	[more]
AT5G10000.1	5.1e-17	38.28	ferredoxin 4	[more]
AT1G60950.1	1.9e-16	40.17	2Fe-2S ferredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 43..145 e-value: 1.1E-27 score: 97.6
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 51..123 e-value: 3.8E-14 score: 52.4
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 46..135 score: 12.374221
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 48..130 e-value: 7.76721E-23 score: 83.9836
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAM	TIGR02008	TIGR02008	coord: 45..137 e-value: 5.5E-28 score: 94.6
None	No IPR available	PANTHER	PTHR43112	FERREDOXIN	coord: 1..142
None	No IPR available	PANTHER	PTHR43112:SF9	FERREDOXIN C 1, CHLOROPLASTIC	coord: 1..142
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 44..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g10600.1	Cp4.1LG03g10600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding