Cp4.1LG03g10490 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g10490
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein RDM1-like
Location	Cp4.1LG03: 11591204 .. 11593366 (+)
RNA-Seq Expression	Cp4.1LG03g10490
Synteny	Cp4.1LG03g10490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTAAAGCAAGGGGTGTAAGTTTGTGGGCTAAAGCTCTATGAACCGGTGGTTGAACCGGCCTTTTGAACAAATGTGGAACGTCTCCGATCTCCCCTCGCGCAAAAGCCAAACGCCGCGAACTCAAAACTGGTCTCTCAAATTCGAGCTTGATGAATAACTGAGCTATATTTTGTTGATCTGTCGCAAAATCCATATCGGAGAGGAGCTTCATCTCTACGATTGGACGCTCTCTCTCGCTTTTCGAATTACGAAGGTACTCACCATCACTCTCGCTTGTTGTCGATCCATTACCATCTCTGTTCATATGTAATAAATTCACTTGGTTTTGTGCTTCTTGCCGATAATCTCTATTCTTGTTCTTCCATTTCAGATTTCTACTTACCGACTCTCGTAATCTTTAATTTCCACTTGTTTTTACTCTGCTTTGAAATGCTTTCATTTTACAGGTCCGATGGGATTTTCGGTGCATTTGTATGAAAATTTATTGTTTATTTGTTTGTTTGAGAAGTCGATCGTAATTTTTTATCACTTGGTTGGTGGAGTCTTCCAGAATGTTGCTTAGAGGGATGAACATTCATCGTTTGATGCAAGTTCTTAGAAATTGCCCTAGATAGCGATGGTTATTAAGTGCACTGCTTATAATCTGAGCGTGATCCCTGGCGGAAACTGAGTGCATTGCTCCATAAGTTGCATGTGCGAGGTGGTTTTCGAGAATGGAGATGTCTATTAGTAAGATTGTGATGGCCTGATAGGGTGAATTTGTTTCTGCGTTGGACCCAGAACCAGAATTGAATTGGTTGATTTGTTCTATGTCTGTGATTAAATTTTGTAATGAACATGAGATTGAAAGTTTGAAGTACATTTTGTTTTATGCTAACTAAAAGCTGTTGTGCTCTTTTTCCATCTCAATAGTAATCTTTTGTATCTGTTGGATCTATTTATTGTGGTTGGCATCTCATATTACTAACTCTTCGTATACTCACATGAATCTTTAAACGTGCTGCTATTTGGTAATCTGTATTGTATTAATCGGCATCATAGCTAACCCATGATCACTTCTTGTCCAGAATTACATAATTGACAAAATGAAGAGGCCAATGCCGTGGAATGAACAAGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAACAGGAGTACAAAATGATGGATTCGAGTTCAAGCCTTCCATCGACGATTTCAAAATTCCTGCTAAAGAAATGACAGCTGAAGGTAATTTGACGCATTGCATAAGATCAATTCATAGTGTTTAATGATCAATGCTGCTGTATATATAAATTTTCATGTTCATAAGCTTTAAAAAAGAGGGTCTTTGAAATGTCGTTTAACGATGCAGGTACGTTGATTAAAAGGGCCGAAATGTATCAAGAATACATGAAACAGATCCAGATCCCAGCACAACGTGGTTCTGTAATACCATTTACAACATGGATGGGTTTAGGCAAATCTATAAAGCAGCTTTATGGTCAGCCTTTGCATTACTTGACTAACATTCTACTCAAACAGTGGGATCAATTAAGGTTCGGTAGTGTGGATGAATATAAGCCATTGGATACCGTAATTCATCCTAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGCACCTCGTCGCATCATCATGTTGCTAAACTGTGGTTATCAGACCCGATGCACGAAGCTTACGTTGACTCCATTTTCCCCCAACTTTGAAAGCTGCTTTCTGTTACGTTCGGGTCTGTGTCGATACTAAAACATATTTCTAGAAGGCTAACATGTTGATGACAATGTGAATTGTAATAGAAACAGCATAGTTCTTCAGTCACATTGCACTTTAATGTGTAGGTTTTTTTATATAATCCCATTGGGTTTCGTTGTATGCTCTTTGTAATATTATAGAGCTTCTTCAAACTTACATCCACGGCTTACATGCAACCATAATGAACAATCTTTGGGGAGATTCCTAGTTGATTCATTGACTGACTCCTCCTGTATGTGCTGCCCTTGTTTCACAGAATCACCATGGCCGCAAGCTGTTAATATGTTTACAAAAACTGTTTGCTATGGTTTCAACTCTTGCCATAGCATCTCATTGTAAGATTCTGTAGCTCGTTTGCCATTCCCATTGCTGTTGTCAATCG

mRNA sequence

TGTAAAGCAAGGGGTGTAAGTTTGTGGGCTAAAGCTCTATGAACCGGTGGTTGAACCGGCCTTTTGAACAAATGTGGAACGTCTCCGATCTCCCCTCGCGCAAAAGCCAAACGCCGCGAACTCAAAACTGGTCTCTCAAATTCGAGCTTGATGAATAACTGAGCTATATTTTGTTGATCTGTCGCAAAATCCATATCGGAGAGGAGCTTCATCTCTACGATTGGACGCTCTCTCTCGCTTTTCGAATTACGAAGAATTACATAATTGACAAAATGAAGAGGCCAATGCCGTGGAATGAACAAGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAACAGGAGTACAAAATGATGGATTCGAGTTCAAGCCTTCCATCGACGATTTCAAAATTCCTGCTAAAGAAATGACAGCTGAAGGTACGTTGATTAAAAGGGCCGAAATGTATCAAGAATACATGAAACAGATCCAGATCCCAGCACAACGTGGTTCTGTAATACCATTTACAACATGGATGGGTTTAGGCAAATCTATAAAGCAGCTTTATGGTCAGCCTTTGCATTACTTGACTAACATTCTACTCAAACAGTGGGATCAATTAAGGTTCGGTAGTGTGGATGAATATAAGCCATTGGATACCGTAATTCATCCTAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGCACCTCGTCGCATCATCATGTTGCTAAACTGTGGTTATCAGACCCGATGCACGAAGCTTACGTTGACTCCATTTTCCCCCAACTTTGAAAGCTGCTTTCTGTTACGTTCGGGTCTGTGTCGATACTAAAACATATTTCTAGAAGGCTAACATGTTGATGACAATGTGAATTGTAATAGAAACAGCATAGTTCTTCAGTCACATTGCACTTTAATGTGTAGGTTTTTTTATATAATCCCATTGGGTTTCGTTGTATGCTCTTTGTAATATTATAGAGCTTCTTCAAACTTACATCCACGGCTTACATGCAACCATAATGAACAATCTTTGGGGAGATTCCTAGTTGATTCATTGACTGACTCCTCCTGTATGTGCTGCCCTTGTTTCACAGAATCACCATGGCCGCAAGCTGTTAATATGTTTACAAAAACTGTTTGCTATGGTTTCAACTCTTGCCATAGCATCTCATTGTAAGATTCTGTAGCTCGTTTGCCATTCCCATTGCTGTTGTCAATCG

Coding sequence (CDS)

ATGAAGAGGCCAATGCCGTGGAATGAACAAGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAACAGGAGTACAAAATGATGGATTCGAGTTCAAGCCTTCCATCGACGATTTCAAAATTCCTGCTAAAGAAATGACAGCTGAAGGTACGTTGATTAAAAGGGCCGAAATGTATCAAGAATACATGAAACAGATCCAGATCCCAGCACAACGTGGTTCTGTAATACCATTTACAACATGGATGGGTTTAGGCAAATCTATAAAGCAGCTTTATGGTCAGCCTTTGCATTACTTGACTAACATTCTACTCAAACAGTGGGATCAATTAAGGTTCGGTAGTGTGGATGAATATAAGCCATTGGATACCGTAATTCATCCTAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGCACCTCGTCGCATCATCATGTTGCTAAACTGTGGTTATCAGACCCGATGCACGAAGCTTACGTTGACTCCATTTTCCCCCAACTTTGA

Protein sequence

MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL

Homology

[Close]

BLAST of Cp4.1LG03g10490 vs. ExPASy Swiss-Prot
Match: Q9LUJ3 (Protein RDM1 OS=Arabidopsis thaliana OX=3702 GN=RDM1 PE=1 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.8e-48
Identity = 90/158 (56.96%), Postives = 121/158 (76.58%), Query Frame = 0


Query: 16  SGESSSSDSETGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKRAEMYQEYMKQIQIPAQR 75
           SG+S SSD +  + +DGF             +++  EG+L++RAEMYQ+YMKQ+ IP  R
Sbjct: 12  SGDSGSSDVDAEI-SDGF------SPLDTSHRDVADEGSLLRRAEMYQDYMKQVPIPTNR 71

Query: 76  GSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEA 135
           GS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++WDQ RFG+  E + LD++IHP+KAEA
Sbjct: 72  GSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEA 131

Query: 136 TVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ 174
           T+WLVEEIHR T SH H+A LW SDPM+ +++D IFP+
Sbjct: 132 TIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE 162

[Close]

BLAST of Cp4.1LG03g10490 vs. NCBI nr
Match: XP_023527197.1 (protein RDM1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 358 bits (920), Expect = 5.23e-125
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKRAE 60
           MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of Cp4.1LG03g10490 vs. NCBI nr
Match: XP_022979547.1 (protein RDM1-like [Cucurbita maxima] >XP_022979548.1 protein RDM1-like [Cucurbita maxima] >XP_022979549.1 protein RDM1-like [Cucurbita maxima])

HSP 1 Score: 355 bits (912), Expect = 8.68e-124
Identity = 172/174 (98.85%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKRAE 60
           MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPS+DDFKIPAKEMTAEG LIKRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSLDDFKIPAKEMTAEGMLIKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of Cp4.1LG03g10490 vs. NCBI nr
Match: XP_022955802.1 (protein RDM1 [Cucurbita moschata] >XP_022955803.1 protein RDM1 [Cucurbita moschata] >KAG7018727.1 Protein RDM1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 355 bits (911), Expect = 1.23e-123
Identity = 172/174 (98.85%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKRAE 60
           MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPS+DDFKIPAKEMTAEG LIKRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSMDDFKIPAKEMTAEGMLIKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of Cp4.1LG03g10490 vs. NCBI nr
Match: KAG6582316.1 (Protein RDM1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 355 bits (911), Expect = 1.88e-123
Identity = 172/174 (98.85%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKRAE 60
           MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPS+DDFKIPAKEMTAEG LIKRAE
Sbjct: 13  MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSMDDFKIPAKEMTAEGMLIKRAE 72

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE
Sbjct: 73  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 132

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Sbjct: 133 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 186

[Close]

BLAST of Cp4.1LG03g10490 vs. NCBI nr
Match: XP_038877941.1 (protein RDM1 [Benincasa hispida])

HSP 1 Score: 354 bits (909), Expect = 2.49e-123
Identity = 171/174 (98.28%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKRAE 60
           MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPS+DDFKIPAKEMT+EG LIKRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSLDDFKIPAKEMTSEGMLIKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of Cp4.1LG03g10490 vs. ExPASy TrEMBL
Match: A0A6J1INZ9 (protein RDM1-like OS=Cucurbita maxima OX=3661 GN=LOC111479225 PE=4 SV=1)

HSP 1 Score: 355 bits (912), Expect = 4.20e-124
Identity = 172/174 (98.85%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKRAE 60
           MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPS+DDFKIPAKEMTAEG LIKRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSLDDFKIPAKEMTAEGMLIKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of Cp4.1LG03g10490 vs. ExPASy TrEMBL
Match: A0A6J1GV10 (protein RDM1 OS=Cucurbita moschata OX=3662 GN=LOC111457683 PE=4 SV=1)

HSP 1 Score: 355 bits (911), Expect = 5.97e-124
Identity = 172/174 (98.85%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKRAE 60
           MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPS+DDFKIPAKEMTAEG LIKRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSMDDFKIPAKEMTAEGMLIKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of Cp4.1LG03g10490 vs. ExPASy TrEMBL
Match: A0A1S3AWI8 (protein RDM1 OS=Cucumis melo OX=3656 GN=LOC103483688 PE=4 SV=1)

HSP 1 Score: 344 bits (882), Expect = 1.58e-119
Identity = 165/174 (94.83%), Postives = 169/174 (97.13%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKRAE 60
           MKRPMPWNEQVDVISSGESSSSDSE  VQNDG+EFKPS+DDFKIPAKEMT+EG L+KRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of Cp4.1LG03g10490 vs. ExPASy TrEMBL
Match: A0A5D3D0B3 (Protein RDM1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00640 PE=4 SV=1)

HSP 1 Score: 343 bits (880), Expect = 3.19e-119
Identity = 164/174 (94.25%), Postives = 169/174 (97.13%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKRAE 60
           MKRPMPWNEQVDVISSGESSSSDSE  VQNDG+EFKPS+DDFKIPAKEMT+EG L+KRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHY+TNILLKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYMTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of Cp4.1LG03g10490 vs. ExPASy TrEMBL
Match: A0A0A0L8M0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G146430 PE=4 SV=1)

HSP 1 Score: 342 bits (877), Expect = 9.15e-119
Identity = 162/174 (93.10%), Postives = 169/174 (97.13%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKRAE 60
           MKRPMPWNEQVD+ISSGESSSSDSE  +QNDG+EFKPS+DDFKIPAKEMT+EG L+KRAE
Sbjct: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174

[Close]

BLAST of Cp4.1LG03g10490 vs. TAIR 10
Match: AT3G22680.1 (RNA-DIRECTED DNA METHYLATION 1 )

HSP 1 Score: 192.6 bits (488), Expect = 2.7e-49
Identity = 90/158 (56.96%), Postives = 121/158 (76.58%), Query Frame = 0


Query: 16  SGESSSSDSETGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKRAEMYQEYMKQIQIPAQR 75
           SG+S SSD +  + +DGF             +++  EG+L++RAEMYQ+YMKQ+ IP  R
Sbjct: 12  SGDSGSSDVDAEI-SDGF------SPLDTSHRDVADEGSLLRRAEMYQDYMKQVPIPTNR 71

Query: 76  GSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEA 135
           GS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++WDQ RFG+  E + LD++IHP+KAEA
Sbjct: 72  GSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEA 131

Query: 136 TVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ 174
           T+WLVEEIHR T SH H+A LW SDPM+ +++D IFP+
Sbjct: 132 TIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE 162

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g10490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUJ3	3.8e-48	56.96	Protein RDM1 OS=Arabidopsis thaliana OX=3702 GN=RDM1 PE=1 SV=1	[more]

BLAST of Cp4.1LG03g10490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023527197.1	5.23e-125	100.00	protein RDM1 [Cucurbita pepo subsp. pepo]	[more]
XP_022979547.1	8.68e-124	98.85	protein RDM1-like [Cucurbita maxima] >XP_022979548.1 protein RDM1-like [Cucurbit...	[more]
XP_022955802.1	1.23e-123	98.85	protein RDM1 [Cucurbita moschata] >XP_022955803.1 protein RDM1 [Cucurbita moscha...	[more]
KAG6582316.1	1.88e-123	98.85	Protein RDM1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_038877941.1	2.49e-123	98.28	protein RDM1 [Benincasa hispida]	[more]

BLAST of Cp4.1LG03g10490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1INZ9	4.20e-124	98.85	protein RDM1-like OS=Cucurbita maxima OX=3661 GN=LOC111479225 PE=4 SV=1	[more]
A0A6J1GV10	5.97e-124	98.85	protein RDM1 OS=Cucurbita moschata OX=3662 GN=LOC111457683 PE=4 SV=1	[more]
A0A1S3AWI8	1.58e-119	94.83	protein RDM1 OS=Cucumis melo OX=3656 GN=LOC103483688 PE=4 SV=1	[more]
A0A5D3D0B3	3.19e-119	94.25	Protein RDM1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00640 P...	[more]
A0A0A0L8M0	9.15e-119	93.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G146430 PE=4 SV=1	[more]

BLAST of Cp4.1LG03g10490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22680.1	2.7e-49	56.96	RNA-DIRECTED DNA METHYLATION 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036319	RDM1 superfamily	GENE3D	1.20.120.690	RDM1 protein domain	coord: 53..174 e-value: 6.4E-63 score: 212.0
IPR036319	RDM1 superfamily	SUPERFAMILY	109920	Hypothetical protein At3g22680	coord: 53..173
IPR015270	Protein RDM1, plant	PFAM	PF09187	RdDM_RDM1	coord: 55..173 e-value: 2.7E-66 score: 221.0
IPR015270	Protein RDM1, plant	PANTHER	PTHR36366	PROTEIN RDM1	coord: 1..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..31
None	No IPR available	PANTHER	PTHR36366:SF1	PROTEIN RDM1	coord: 1..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g10490.1	Cp4.1LG03g10490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044030	regulation of DNA methylation
cellular_component	GO:0000419	RNA polymerase V complex
cellular_component	GO:0005634	nucleus