Cp4.1LG03g09510 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g09510
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Expansin
Location	Cp4.1LG03: 7193797 .. 7193976 (+)
RNA-Seq Expression	Cp4.1LG03g09510
Synteny	Cp4.1LG03g09510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAATTCCTTCAACTTTGTGTTCCTTTGGTTGAGTTTGGCAGCCTTTTTGGCAGACCCCATAGCATGTAGGCTCCTTGATCCCATTGGTATTCAAAACATCAACGGTGCATGGCGCAATGGTCGTGCCACCTTCTACGGTGACATGACGGGCGGCGAAACTATGCGTAGGGATTAA

mRNA sequence

ATGGCTAATTCCTTCAACTTTGTGTTCCTTTGGTTGAGTTTGGCAGCCTTTTTGGCAGACCCCATAGCATGTAGGCTCCTTGATCCCATTGGTATTCAAAACATCAACGGTGCATGGCGCAATGGTCGTGCCACCTTCTACGGTGACATGACGGGCGGCGAAACTATGCGTAGGGATTAA

Coding sequence (CDS)

ATGGCTAATTCCTTCAACTTTGTGTTCCTTTGGTTGAGTTTGGCAGCCTTTTTGGCAGACCCCATAGCATGTAGGCTCCTTGATCCCATTGGTATTCAAAACATCAACGGTGCATGGCGCAATGGTCGTGCCACCTTCTACGGTGACATGACGGGCGGCGAAACTATGCGTAGGGATTAA

Protein sequence

MANSFNFVFLWLSLAAFLADPIACRLLDPIGIQNINGAWRNGRATFYGDMTGGETMRRD

Homology

[Close]

BLAST of Cp4.1LG03g09510 vs. NCBI nr
Match: KAG6581677.1 (Expansin-A25, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119 bits (297), Expect = 3.20e-31
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MANSFNFVFLWLSLAAFLADPIACRLLDPIGIQNINGAWRNGRATFYGDMTGGETMR 57
          MANSFNFVFLWLS AAFLADPIACRLLDPIGIQNINGAWRNGRATFYGDMTGGETM+
Sbjct: 1  MANSFNFVFLWLSFAAFLADPIACRLLDPIGIQNINGAWRNGRATFYGDMTGGETMQ 57

[Close]

BLAST of Cp4.1LG03g09510 vs. NCBI nr
Match: XP_022930571.1 (expansin-A25-like [Cucurbita moschata])

HSP 1 Score: 119 bits (297), Expect = 3.20e-31
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MANSFNFVFLWLSLAAFLADPIACRLLDPIGIQNINGAWRNGRATFYGDMTGGETMR 57
          MANSFNFVFLWLS AAFLADPIACRLLDPIGIQNINGAWRNGRATFYGDMTGGETM+
Sbjct: 1  MANSFNFVFLWLSFAAFLADPIACRLLDPIGIQNINGAWRNGRATFYGDMTGGETMQ 57

[Close]

BLAST of Cp4.1LG03g09510 vs. NCBI nr
Match: XP_023528147.1 (expansin-A25-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110 bits (274), Expect = 8.74e-28
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 1  MANSFNFVFLWLSLAAFLADPIACRLLDPIGIQNINGAWRNGRATFYGDMTGGETMR 57
          MA+SFNFVFLWLS AAFLADPIACRLLDPIGIQNINGAWRN  ATFYGDM GGETM+
Sbjct: 1  MASSFNFVFLWLSFAAFLADPIACRLLDPIGIQNINGAWRNAHATFYGDMGGGETMQ 57

[Close]

BLAST of Cp4.1LG03g09510 vs. NCBI nr
Match: XP_022980692.1 (expansin-A25-like [Cucurbita maxima])

HSP 1 Score: 108 bits (269), Expect = 4.86e-27
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MANSFNFVFLWLSLAAFLADPIACRLLDPIGIQNINGAWRNGRATFYGDMTGGETMR 57
          MANSFNFVFLWLS A FLADPIACRLLDPIGIQ I+GAWRN RATFYGDM GGETM+
Sbjct: 1  MANSFNFVFLWLSFAGFLADPIACRLLDPIGIQKIDGAWRNARATFYGDMGGGETMQ 57

[Close]

BLAST of Cp4.1LG03g09510 vs. NCBI nr
Match: KAG6581675.1 (Expansin-A25, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107 bits (267), Expect = 9.66e-27
Identity = 50/57 (87.72%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 1  MANSFNFVFLWLSLAAFLADPIACRLLDPIGIQNINGAWRNGRATFYGDMTGGETMR 57
          MA SFNFVFLWLS AAFLADPIACRLLDPIGIQ INGAWRN  ATFYGDM GGETM+
Sbjct: 1  MATSFNFVFLWLSFAAFLADPIACRLLDPIGIQKINGAWRNAHATFYGDMGGGETMQ 57

[Close]

BLAST of Cp4.1LG03g09510 vs. ExPASy TrEMBL
Match: A0A6J1ERA3 (Expansin OS=Cucurbita moschata OX=3662 GN=LOC111436979 PE=3 SV=1)

HSP 1 Score: 119 bits (297), Expect = 1.55e-31
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MANSFNFVFLWLSLAAFLADPIACRLLDPIGIQNINGAWRNGRATFYGDMTGGETMR 57
          MANSFNFVFLWLS AAFLADPIACRLLDPIGIQNINGAWRNGRATFYGDMTGGETM+
Sbjct: 1  MANSFNFVFLWLSFAAFLADPIACRLLDPIGIQNINGAWRNGRATFYGDMTGGETMQ 57

[Close]

BLAST of Cp4.1LG03g09510 vs. ExPASy TrEMBL
Match: A0A6J1IS01 (Expansin OS=Cucurbita maxima OX=3661 GN=LOC111479987 PE=3 SV=1)

HSP 1 Score: 108 bits (269), Expect = 2.35e-27
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MANSFNFVFLWLSLAAFLADPIACRLLDPIGIQNINGAWRNGRATFYGDMTGGETMR 57
          MANSFNFVFLWLS A FLADPIACRLLDPIGIQ I+GAWRN RATFYGDM GGETM+
Sbjct: 1  MANSFNFVFLWLSFAGFLADPIACRLLDPIGIQKIDGAWRNARATFYGDMGGGETMQ 57

[Close]

BLAST of Cp4.1LG03g09510 vs. ExPASy TrEMBL
Match: A0A6J1EQX8 (Expansin OS=Cucurbita moschata OX=3662 GN=LOC111436984 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.30e-17
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 11  WLSLAAFLADPIACRLLDPIGIQNINGAWRNGRATFYGDMTGGETMR 57
           ++ L AFLADPIACRLLDPIGIQ  NGAWRN  ATFYGDM GGETM+
Sbjct: 54  FIKLVAFLADPIACRLLDPIGIQKSNGAWRNAHATFYGDMGGGETMQ 100

[Close]

BLAST of Cp4.1LG03g09510 vs. ExPASy TrEMBL
Match: V4UXJ5 (Expansin OS=Citrus clementina OX=85681 GN=CICLE_v10013813mg PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.60e-07
Identity = 30/57 (52.63%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 1  MANSFNFVFLWLSLAAFLADPIACRLLDPIGIQNINGAWRNGRATFYGDMTGGETMR 57
          MA + NF F W S  A LA  +A RL  P     +NGAW +  ATFYGDM+GGETM+
Sbjct: 1  MATTGNF-FAWFSFMAALAMAVASRL--PYDEVKMNGAWEDAHATFYGDMSGGETMQ 54

[Close]

BLAST of Cp4.1LG03g09510 vs. ExPASy TrEMBL
Match: A0A2H5PKC4 (Expansin OS=Citrus unshiu OX=55188 GN=CUMW_144800 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.03e-06
Identity = 29/57 (50.88%), Postives = 35/57 (61.40%), Query Frame = 0


Query: 1  MANSFNFVFLWLSLAAFLADPIACRLLDPIGIQNINGAWRNGRATFYGDMTGGETMR 57
          MA + NF F W    A LA  +A RL  P     +NGAW +  ATFYGDM+GGETM+
Sbjct: 1  MATTGNF-FAWFGFMAALAMAVASRL--PYDEVKMNGAWEDAHATFYGDMSGGETMQ 54

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g09510 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g09510 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581677.1	3.20e-31	96.49	Expansin-A25, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022930571.1	3.20e-31	96.49	expansin-A25-like [Cucurbita moschata]	[more]
XP_023528147.1	8.74e-28	89.47	expansin-A25-like [Cucurbita pepo subsp. pepo]	[more]
XP_022980692.1	4.86e-27	87.72	expansin-A25-like [Cucurbita maxima]	[more]
KAG6581675.1	9.66e-27	87.72	Expansin-A25, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Cp4.1LG03g09510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ERA3	1.55e-31	96.49	Expansin OS=Cucurbita moschata OX=3662 GN=LOC111436979 PE=3 SV=1	[more]
A0A6J1IS01	2.35e-27	87.72	Expansin OS=Cucurbita maxima OX=3661 GN=LOC111479987 PE=3 SV=1	[more]
A0A6J1EQX8	3.30e-17	78.72	Expansin OS=Cucurbita moschata OX=3662 GN=LOC111436984 PE=3 SV=1	[more]
V4UXJ5	5.60e-07	52.63	Expansin OS=Citrus clementina OX=85681 GN=CICLE_v10013813mg PE=3 SV=1	[more]
A0A2H5PKC4	2.03e-06	50.88	Expansin OS=Citrus unshiu OX=55188 GN=CUMW_144800 PE=3 SV=1	[more]

BLAST of Cp4.1LG03g09510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g09510.1	Cp4.1LG03g09510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009664	plant-type cell wall organization
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016020	membrane