Cp4.1LG03g09420 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g09420
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	double-stranded RNA-binding protein 1-like
Location	Cp4.1LG03: 7028833 .. 7043585 (-)
RNA-Seq Expression	Cp4.1LG03g09420
Synteny	Cp4.1LG03g09420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACTACACGATGCATTCCTGGATTTGGGGGAAATTAAGTGTGAAGAAAGAAGTGAAGTCTCTCCTCAAGCTAGCACTCCACTGTCACCATCATCTTCTCAATTTCTTGATTTCCTCTCCATCTCTACCTGAATCCATTTCTTGATCGAACGCCACCTTCCAAAATCATGTTCAAAACAAAGCTTCAAGAGCTCTGTCATCGCAAATCCTACGAATTACCCGTGTATTCCGTTGTCAAGCAAGGTCAAGATCATGACCCGCGCTTTGAGGCCACAGTCACCGTCGCCGGCAACAAATTCTGTTCCCAGACTCCTTGTAAGTCTTCCAAGCAAGCACAGAACGATGCTGCTAAACTTGCTTTTGACTTCTTTTCTCTTCCTTCTTCACCCAAGCTTCAGCCATACCATCCCCAGCCATCTTTTCCGGAATCATCTCCTCCGATGGAACAACTTCGTTACAGTCCTCAATTTTCTCATCCCTCTCTGCATATTTCTTCTTTTCCACAGCCGTCCTTGCCTTCGCAATCGGGTATGACTTTAGACTCTTCTTTCCACTTTCCATTTACTTGTCGATATGCATTTTTCATAGTTTCTACGTATCAGTTAATTAAATGTTTGAGAACCAAATATTTCATCTCTATGGCAAGAATATAAGTGGTAGAGGGAAATTCTAGAACGAGTTGAAAGATTGTGTCTGTTTCTTTTGTTAGGTTCTTTTGGAGGTTCCCTATCGGAATGAGGCTCTCTTTAGGGCAAGATTGTAGTTAGTAAATTTTGCATTACTCCATATGAATGGCTTATGTTGTCTTGCAATCAGCCTCCTAGAAGTGACAATATACATGTTCATTCGCCTCATGAACCTATTTTGGGACAGAATTGCTATTTCAGTGGGGAGTGGCAATTGTTTTTACCTTTATTATCGTGATAATTGCTATTTTGTTTCCTATTGCCGGTCTGTCGATTCTTTGATTTTTTGACTTCTTATCTTAGAGTCAAAATGTAATGGCCCAAGCAGACCGCTGGTAGTAGATATTGTCCTCTTTATGCTTCCCCTCAAGGTTTTTAAAACGCGTATGCTAGGGAAAGGTTTCCACACTGCTAGGAAAAGGTTTCCACACCCTTAGAAAGGGTGTTTCGTTCTCCTCCCCAACCGATGTGGGATCTCACACAAAAGAAATCCCAAAGATGAAGAAGCCGAAGATTATATTTCCCTTGTGAGGAACTTTGGACCTTTATTCTCTTCATGGAGACAAAGACATTAACTTGGAAGCTTGATGGGGATTAGGTTCTTTCTCTTGCGAATTTCGTGTTTGGGGATTTATATACAGCAATCGTTTTATCCTCAGTCAGGATTTTACTGAAGTAATTTGGAGCCATCCCTTTTGTTTTTTGGAACACATAATTTCATTGATAAAATGAAATTACAAAAAGGTGAATCCTATCCATTATGTTACTAAAAACTATTCCAATGGGTTATGAGAGAAGATAAACTATAATTACAAAATGGAGGAGTCAATTTACAAATTTATCCACAAAAGAGCTGGGTAAAGAATTGAAGCCTAGGTAAAAAATGTATGAGAAAGTATGAGAACTTCTCTCCACCCAAATAGACCAAAAGAAAGCCTAGATAAAGTTATCATCGAAACGTACCTTTCCAACAACAGATGTGTCGAGCTCACGAAACACCCTCATTTTTTTCCTGACATGTGGTTGCTTGTTCTAGTATCTAGGTACCAGGAATTTTTAGCTCCAATATTGGTTGTTGGCGGCACTATAGTTTCATTCAACCTCACAAAATCAGGCTCTTTGTCACGTGCAGTTTTAATTTCACACGCCTCTATCATTAGCAATGAAGACTCCTCATCCTTCTGCATCTCCTTCAAGTTGAGTTGTTTGTCTTTTGTGGAACACTATGATGCGAAGTGTTCCATCGGCTGACACCTGTAACATTTAATTTTACTTTTATCGAATTTCTTCTTCTGAGTTTGTGACAATCCTTCATCTCCTCGATGCCAATCACATCTCCCACGGCCTCTCCATCTTCCACGACCCCGTCACCTGCCTCCTCTGGAACTGCCTTGATCCTTCCCTTCTTTCTTTGAGGATTTTGCATTCTGTCGTCCCTTCCATTCTGCACGAGTGAGGAGAACGGTTTCATCTTTTTCTCCAAACCCTTGCATCCTTTCTTTATGTGTCTTGAGTGATCCAATAATCTCATCAACAAATTTCGTTTTGAGATCACTGAACTCCTCAATCGTTGAAGTGATTTGAAGAAACTTTGCAGAGGTGGATCGTAGAAGCTTTTTAACTACTTGGATATCATCCACAGTATTGTCGAAGCCTCTTAATTTGTTGACAATTATGGTGAGTTTTCCAGCATACTCATAAATACTTTTTGAATCCCATCCTCAACGCTTCAAACTCCCACCAGAGAGTCTGCGTTCCAACTTCTTTCACTCTTTCCGCACCTAGATTCATATTTTTCAACATGATCTAGGCTTCCTTGGCCGTTTTCTTGGCACCCAACTGTAGCAACTTATTTTCTCCAATACTTTGATAAATAGCTGCTAAAGCCATCTTATCTTTGCGATTATCTACTGTTTCGGGTGATTTAATTGTCTCCCAAACACCTTGTGCCATCATAAATACCTCTTAATTGCCCAAGCTGCATAGTTGCATTTTGTCAACATCAGGTATTTGAGTGTGACAGGTCCCTCCTTTTTTTGAATCCGTACACTCACTTCATTTGAGGCATCATCTTCTATCGCATTGGTGCTTTGGCTCCTGTCACTCGATTCCTGTCTCATTTTTTGATCTCTCTCTTCTTGACCGCTCAATCTCTAGGTGAGACATGATTGAAAACAAGCTTTGATCTTGTAGCTCTGATACCAAATGAAAGAAAATAACGGAAGAAGGAGCAAAGACACACAAATTAATTTTCCTCTTTTTTTTTGTGGTGTGTTACTATATTGACACTATTTTTGTTATATAATAAAAAAATAACACATTTCTTGATACAAATAAGCTACCACTACTTCCACTAATTCCACCTCCTAAAAATTAGTTCCACTCTTCCACTGCTTCCACTCTTCCTATCGTCCATATCTCCAGCCTTTTTTCATGGACAAATAAACAACAAAATAAAATAAATACTAACAGCTACTTTTAGCCAAAACCTTACGAAGGAAAAGAAATAAATAAAACAAGTGTATAACCAACACCAGATCCACCTAGCGGATAAAGATTTATTTTTATGCTGTTAGCCAATATTCCCTAAACTCCCTTCATCAATTAGGAGCTTGACTTGACCCATTTTAGGAGGTGAGAAGCCTTTCTTCTCTTTCCTGCTTTTCCAAATAAAATTGCAGGACAAACACTCACTGGCAAACAAGGCCATGGGAGGGATGGGGTAAAGGGCCAAATAATAACTAGTGAGATTAGTCAAAGTAGCTTGGATAAGAGGACGACCCTCTTTCGATATGTGAAACTATCCCCATGAGTTAAGCCTATTCTCCACTTTTTCCAGAGTAGAAGCCAAAAGGAGTAAGATTGAGGTTTGCCATTGAGAAGCAATTCCAAATAAGAAGTTGGCCAATTTCCTTCATTGCACCTGAAATTAACGGTAAGAGAAAATACCATTTGTAGGTCAAACATCGAAAGTAGGAATTGTAGGAAAATTTTTGGCCAGACTAGAACTCCAAAGGCGAACATCCCCCTCCCTGGGCTAATACAAAACTCTTCCAACAAAGATTAAAGAGTTAGAACGTCTGTCATTTTCCTATTGATCAACGGACGACGAAACCCAAAGAAGGAGATAGAGAGTTCTCAAACTGAGAAGGGCTTGTAGCTTCCAAATGATTCTCGAAGAGAATAGCTGATATAAGGAGGAAACATGGAGTAAAGGGGTTTATCCCCGCCCATTTATCCTCTCAAAAGTAAGTATCCCCCCACCTCCTTTAACACAATAAAGAAATTGTGAAAGAAATGGTAGCTCAATAGAAATATATTTTCATGGGTTTCTAGAAATGCATTTAACCCCACTAACAAGGAAGCTCAATAGAAATAACCATTTAGCTACTAAGGCTTTGTTCCTGGCTCTTACGTTATCTATGCCTAACCTTCCAAGGTTTAGCAGCCTGCACCACCTCCCATCTCACATGATGAGAACCTTTCTCCTCATCAGCTCCCTCCCATAAGAATCCTTTTCAACTTCTCAAAAACTTAGCTAACCACACTAGGGACACTGAAGAGGGACATAAAAATAGATCGGGATGTCGTTCAAGACTGATTGGGTTGGATTGAAAGTCCCAACATGGGAAGAAAGGATGGGTGCAACATTAAATACAAGCTAAGGGAGAATTCAAGAGCTTCTTTCTCCAAATGTCCAACATAATTCTAATAAAAAAATATTCCTGCACCTTCCTATTTCCTTATATGCTTATATATCCCATAACGACGACATTTCTCAATCCATGTCTTAACCAATTCATGGGCCCCACTCATATATTACTCACTCCTTGCACAATTTTTCTTTCCCCCTAGTGTTGTCCTATGACAAACCTTTGTTACTGGGGCCGATGCCTATCACGTGTGGACTTGGGACCATTGGAGAAATTTGCAGATGATGGAGAAAGAGTTGTCTATGGACACTATATACATGGAGATGTCAACGACACAAGTGGAAGGTGCGTGATGTGAGGTAGAAGAAGAGTCTACTTTCCAGGTCATGTTTGTCCATTCTATGAGCACGAGTTGGATGTTACTTTAGGTATATCCTAACTAAAGCCAATATTATTAAACTACCTAGTGTGAAAAGTTTGAACCCTTAAAATCCACAAAATTATGTCATATTCATAGATCTAAAGACTAACGGTAGGTATATTATTGTGGAGATAGAAGTGCGGTGATCAAGTATACAAATGACTTGGCCATAGAGAGATAATGGACATGGTTTAGATTTTTGAAGATTAATCATGACTAGAAATCGTGAGTGAAAGAGTGCACCACATGCATGAAAGAGATAATGAACCTTGGGTTTGAGTATGTTCGTTGCAAGATGATGGCATGAATTTTTACAAAATGTTTTCATGACATGGGCCCTATTAGTAACTGTTTCTGAAAACCATTTCAGGATTTGTGCTCACCAAATACTTACCTGTCGTTCTTGATATGCCTTGCATTTTTAAAAACATAAAATTAAATATGATTCAATCAATTGCACCCAGCGTACAGTTTTCCCTTCTATTCTAATCTTAATGACATTGTCATGGACTACTAATTACTTGAAAACTTTGGCCTTCTGCTATTAGTTGTTATCCTGGACAACACAATGTGATGAAGATTTAGTTAGGTTGGGATTCAGACATAATATTTATTTTTCCAATATGCTAGAATGCTTAAAATATTGTTGTCACTTTCCTTTTCTTGCAGACACTTTTGGTGCAACAACTAACCTGGACAACACAGTTTCTTACCCACTGAGACCACTAAAGCTTGAGGTGGCAAATGAATGTTCTGAACTTGTGGAATCCACTAAAGGTTTTAAAAGCAGCATTCAATGTTTATAAAGCTTTCCAGCAACTTTTCACATCCTTAAAAAATAATAATTATTGTTTCATCAAATTATTTTCTGAGTGTGCGCGCTAGGATACTTACATTTGTTAATGTGGTTTGATTCTTCCTGTAGATTCTTCTATCACGAGTAATATGGATGTCAAATTTTCAGCACAGTCAGTTGAACCGAAAATTCAAAACACTGACAAGTCTCCCGTGGTTGATTACTTTGACAAAGAATGCAGTAAATTGACTGGTTAGAAAGGATTATCACCATATTCATGTACATTAAAAAAGATATATTGCTTCAATATTATGGTAGCATTGTGGCACATATTGGTTTATTTTGACTATGTTCTGGCATGCATATGGTATGATTTACTCGTATCCTTTACCAAGTCAAGATGGTTGAACACTTTAAATGCTCATATGATCAGCAACTTTATGTCGGGTTGGCACAAATATTAGATTGCAATATGGAAGTAGATGATAGCTTTTTATCTAAAAACATATGGAGGTAAAATATTATGTTTACATTTCTTTCTTTTTCTTTTTTGGAAACACATGCTGGTATTTGTTATTGTATCCTTTGTTGTAATGTATGTTGGATTCTGAAGAATGGAGTAGGATGACTTTTTTTTATGAGATTTTATTTGGATGATAGATTTGTAGGGTTTAATTAGCTTTTAAGAATCCAACATAGGTAGGAAAAATAAAATATGTATTCTATCCTTGGAGTTCTCAAGTAAGTCGAAGAAAAGAAAGAAAAAAAGGAAGAAAGAATAGGTGACCAGTGGGTTTCACATATGCAAGGAGAGGGAAGAACTAGTAAGGTTGGGGGTCATTTAGCCTCTAACAATGTCGAGGTTATTCGGCAGGGTAGGCTAGTCGGGTTTTTGTGGGTTAAGACTGAGCAACTGCTACTAATATAGGGAGAGGACTATTGACAGGAGGCTAGAATGTGAAAGTCCCACCTCTCAAGTGCTTGGAAGGTGAAGTACCTAATATTTATTAACAATGTCTTCTAAATTTGTTTTGAACGATGCATCATCATTTTTTCTATAATGAGTTTTTTAGCTAACTTTTATGCACTTCAATTACATTTGATTGATACTATTACATTTGGTTGCCAATAAATTTGTAGGGTTTTAAATCCTAAGTCGGTAGTCATTCCATTTCATTTCCTTCAAAGCTCTTTACCTTCTTTGTTGATCCCAATGGCTATCAGATCCGTTGTAAACACACAAACTAAAATCAATTACATTATCAAACTAATCAACTTGGTTGGCTTTTGTAGCCTTACAAACTAACGTATTTAGAAATGATAAAATTAGCCAACTCTAAAAATAGGAAAAACAACCACCCACTAATTAATTTAGTGGTTCTAACATTCGTAGAGATGGGGGACATTCTAAAGAAATGGTAGCCATTTCATCCTAGAGAACAGGTCTAGTATGACTATCTTTAACAATTTCTCCCCTAAATTGATTGCAGGGATGCTTTCAGTTTACTCGTGGTACTACACACATACCCATTGACTCACGTAGTTTATGAATGCATCCAGCTTTAGTGGTTTTGTCATAATATCTGCAACTTGTTCTTGTGTGACACAATGCTTCAGCTCAATAACTCCATCTCTAGTCAAATCACGCAAGAAATGAAACCTCACATCAATGTGTTTGCTACGTCCATGCATGATTGAATTCTTGGATAGCTTAATAGTGGAACTGTTATCACATAACATAGTGATACACTTGTCTTGAAAATGACCAAGTTTTTCCAAAACTCTCCTCATCCACACCCCTTGACAAGCACAAGATGCGGCTGCCACAAATTCTGCTTCAGTAGTGGACAACGTAAGAACACATAGCCAGAAGTGCTTTTCCTATCATCTATATCTCCTGCATAATCACTGTCAGTATATGTTATCAACTCTCCATTACCCCTTTTCTGATAAAAGATTCCCAATCTATAGTACCTTTTAAGTATCTCAACACTCTTTTTGCAACATGCAAATGCAACTCTATTGGACTTGCCATAAATCTGCTTATTAGAGACACTCCATATGTGAAAAACCCAAACCCCAGGAACAATAGGGTTTTTCACACTATTACTTTTTTCCATTCTAAACTTCTCCAAAACTTCTTTTTGCATACTTTTTCTGACTAATATAGCCTTTAGGATTTTGTAAAATCTCTACCCCGAGAAAATATTTCATTTTTACCAAATCAATTATTTCAAATTCAAGTTTCATAAAATTCTTGAACTTAACAAACATGCTCTCATCATTACCAGTAAAAATTAGATCGTCAACATGTAGACTAACAATCAAAATTTTACCTCCATCTCCTGTTTGTATGAATAAAGTACGGTCACAGTTGCACCTCTCAAATCCTTCTTTGACAAAATGTGCTTCAATTCGACTGTACCATGCACGTGGGGCTTGTTTAAGGCCATATAATGCATTCTTCAATTTGTATACCTTGTATTCTTGACCTTTTTTCTCATAACCTTGTGGTTGCTCAATAAAGACGGCTTCTTTTAATTCTCCATATAAGAAAGCATTTTTCACGTCAAGCTGATACACGTTCCAACCATTCCGAACTGTTAAAGCAATTATCATTCGAATAGTATCCCACCTAGCTAGAGGTGCAAACACCTCGGTATAGTCTATACCATGTTGTTGTGCATAACCTTTTGCTACCAACCTAGCCTTATACTTGTCAACTTCACCATTTTAGTTGAGTTTGGTTTTGAAAACCCAATTTACTCCAATCTTCTTCATTCCTTTAGGCAAATCTATCAACTCCCAAGTCTCATTTCGTCTGATGGCTCCTATCTCCAAGTCCATTGCAGCTCTCCATTTTGAACTTTGAACAGCTTCTTCAAAGGTAGTCGGATCTGTAGTTGAGGTTAATAGAACTAAATTGTTGTTCTCAGCTTCTTCAGAAAATTCTCCCCTGCTCACATAATCTTCCGTCCATAATGGTGCTCTTCTGTTCCTCATTTCGGGAGTGCTTTCTTCAGATGTTGAGGAATTGGATTCAGATGACTCACTGAAAGATATACTAACTTCCCCTTCTTCTTCTGCTATCGTCTCCTCTTCAGATTCTTCCTCACTTTGGTCATGTTCGCCTCCTTCTATAATACTATCTTCCCATTCGATGGTATCAAGTCTAGCTTCTTCATTAGTTTTCCCCCAATTCCAACATTTGTTTTCTTCAAAAATAACATCTCTGCTTACAACTATCTTCTTGGACACTGGATCATAGAGTCTATATACTTTAGACTCTTCACTCATCCGTAGCAACACACAGTGAAAACTTTTATCATCTAACTTCTTTCTCTTACCGTCTGATACATGAACATGCCCAGTGCATCCAAAAACTCGAAAATAGTCAACATTAGGTTTTACGCCACTCCAAGCCTCCTCAGGAGTCATATCTTTCACTACCACTGCACGACTTCTGGTGAGCACGAGCATTGTCTAGTTTACTGCTTCTGACAAAAAATTCTCTAGAACTTGCTTCTCTGATAATATACTTCTAACCATGTTCATAATTGTTCTGTTCTTACGCTCAGCTACACCATTTTGTTGGGGAGTGTAGGCTGCAGTAAGTCGTCTACTGATACCATTAGTTTTGCAAAAATTGTTGAACTCGTGAGAGGTGAACTCTCCACCCCTGTCTGTGCATAGACAATGAATAAAATCTCCCGTCTCTTTCTCAACAAGATTTTTGAAATTCTTGAATAGTAAAGGCTTCAGACTTTTCAGCAAGAAAATATATCCACACCTTGCAGTTGTAATCATCAATAAAACTTCTAAAATACCTCTTCTTACTGTTGGAAAGAGGTTTGACGGGTCCACAGATATTTGCATGTACCAGTTGCAATCTTTGTGTTGCTCTCCATAAACTTCTCTTTAGAAATGAATCCCTATGTTGCTTTCCCACCATGCAATCAGTGCATATTTTAGACGATGCTTTCAACAGGGGTAACCCTCTCACCATTTGTTTATGTTGCAATGTTCTCAAACCTTTTAAGCCTAGGTGCCCATATCTGCGGTGCCAAAGATGAGTGTTGTCTTTTATAATTGTTTGGAAGCAAGTGGCGGTTTGTGGCATGATTCTTGCAAGTAATATGAACATCTTATTTGCAGACATTGTTGTTTGCATAATAAGCCCCTTCTTGGGATGATAGATTTTGCCTTCATGTTGTATCAAATTAGATACACCTCTCTCTTGCAATTGTCCAAGACTTAAGAGATTGTTTTTCAACTCTGGTATATAGAAAACATCAGTGATTACCTGAGTGACTTCAACGACTTGCAATCTAATGTTACTTTTTTCCTAACACCGCCATCTTGAAATTATTCCAAGCTTCACAGATTGTCGGAATTCCTCGTCAAAATCTGAGAACCATTCCTTGTTTGCACACATATGATTGCTATACCCCGAATCAAGGAACCAAACATCTTCCCTCCTTGATTGATTGAGCTCCACATATGACATCAACAAGATTTCTTCTTCATCCTAAAGCTCTGCATAATTTGCTTCCTTTTCCCATTGAGGACAATCATATCTAAAGTGTTCTAACTGATGACACTTATAACACTCAACTGTAGTTCTGTTGAATGGATGTCTACCTCTTCCTCTTCCTCGAAAAACTTCACGAGCTTGATCAACTCGTCTTCCACCGAATCTATTATCGTATGTCACCTTTAGTGTTTGTTCATCACCTACACGTCCATTCAGTCTTTGCTCATGTACCAGCAAGCTGCTTTGCAATTCATCGATTGTTAAAGTGTCTAAGTTAAGACTCTTCAATCGAACATATAACATAGTCAAATCTTGAGGTCATTGATCTGAAGATTTTTTTCAATAATCACCACTTGTTTCATGTGTTTGCCATAAATTTTCATCTTGTTTGCAATGTTGAGAGTTCGAGCAAAATATGCATCAACACTCTCACCTTCTTTCATCGGTAGGACTTCAAACTCTTTCCTAAGAGCTTGGAGTTGAGCTCTTTTTACTCTTGTGGAACCCTGGTACTTCTGCTTCAGGGAGTCCCAAATTTGTTTTGCAAGTATCTCTATTAAGGATTGTTTCCATAATAGTTTGATCAATGGCTTGGAACAAATAATTTTTGACCTTCAAGTCTTTCGGCTTCTAGTTTGCAATTGTTTTTTTTTTTTTGTTGTGCTTTGGTAATCTCTACTACTCCTGCTGCGGCAGGGATTCCGGTCTCCACCAAGGACCAATATTCCTTTGAACGAAGAAAATTTTCCATAAGCATAGACCAATGATCACAATGGCCATCAAACTTAGGAATTGCCAGTTGAACGAAATTGACAACCGCCAATATTTTGAATCTCTTTCAGCTTATTCTTTAAGGAAAAAACTGCAGTTTCTTCTTCTCACAATCAGGCCTTGCGACGTGGCTCTGATACCAAATGTTGTAAACACACAAACTAAAGTTCTAAAAACATTATCAAACAAATCAACTGATTGACTTTTAAATAGGTTACAAACTAAATTTAGAAACGATAAAATTAGTCAACTCTAACTATAGGAAAAACAACCCCGACTCATTAATTTCTCATTAATTTAGTGGTTCTAACATTTCTAGAGAAGTGTACCTCCTAAAAGAAAGGTATTATTTCATCCTAGAGAATAGATCTAGTATGACCATCTTTAACAAGGCCAACCCATGATCATCATCATACGGTGTTTTTGGGATGCCAATTGTTGATATTCTCAATTGCATTATCTTTAGCACCGGAGCAAATTGTTTTTTTGGAATGCTGGAAGGGAAAAGCATGGAAGGTGAATTGGTTCTGTTGAGGAGAGAGAAATTGGAAGACACGAGGAAGTGGTGTAGGAGGTGATACTGCACAAAAATTGGATGATGGTAAAGAACGTAGAAATGTTGCTTGAACGCAGATTGTGAAATGGAAACAGTCAATAATAACTAATCTTAAAGGGAAATGGCTATAAGCTTTTCTTCTATAGGCATAAAGATCCACACACTTCCCATAGAGGTCAATTCGAAGCGAGAGGAGGAAAGTTGCGAGTCCCTACATTTCTTCCCGTAATGGCTTTCATGGTTTGATTTTTTGAGTCTTTCTGGTAAGCTTAAGCTAAACATACATGTTGAGGTGAAGATGTTATTAATGGGTCTGTGTGAGGAAGAGGGAATTAAAGATATGGGAAAAAGGCTGTGTGTCAACTATGGTAGTGAATCTATACTTTGTTAGGAAGGATGCAAATGCGACAATAGCTAGGCCTCCAAATTTTCAATCCAACTAAAAAAAGAAAGAAAAAGAAGGCTATTGCAAAAGTGATTAATTGACATTTAAGGGACTTACAAATGCATATCTGCAAATAGGAGAGAACATGGTTTATGTGTCTTCTATGTGATGAGAATTCGTGGATGTGAGAAGTAGGACTTGCACATATTGGTTCTAAAGGAGTGTATTGGACTTCAACCATTTTCAATACTAAAAATGAAAAATTTGCCGGTGGATTCCAAATAAGAAACAAGGCCTTATCAACAAGAATTGAAGCACCAAGTAACAAATAAAAGTTCTACAATCATCTCCTATCTGTCTTTCTTCATTTCATAATCTCATGTTTCTATCTTGTCGTAATCTTGTTTGTAGAGGGTGCACAGATGTTTGGTGTTTTGGGAAAAAAGCTTTTTTTTTAAAGATCGAAGCAAGTTGACTCTTATTTAGTTCATATTGGGTGGTATCTTGTTATATTTTGTCTTATCTTTAAGTTTTCGCGTTTTATTTTAGTTAGGTTGGAGAAGGTAACAGAAACTTTTAGTGGATAGGTAAGGGTGTAGGGCATGGGCTGCATCCAATTAAGTAGGGGTTAGGCTATGATAAAGGTAGGTTGGGAGTTGGGAATTTAACCTTGAAAATGAAGCTCCCTTGGTTAGATGACATTCTGTTTAGGAGCATACCTTGCTTATAATCTATCTTTGTTCGAATAGGAGGTGCTCATTCATTGGCATGGTCATTCAAGTAATACTTGGGTTATTCTTTCTACCAGCTACACTTGATACGCTTAGCTCGAGTTGTTGGTATTGATGTGGATATACATCCGATTAATTGGAATGATACAAAACAGATTAGTACGACCTTATAAAAAACAGTGCAACTCATACATGAAGAAGATAGAAAGCTAGTAAGACTGTGTGACCAGTTACCCTTAACTATAGATGATGTTCACAAGGGAGTTAGGTTGGTTAGATGGTTGAGTTGCATTGTATCAGGTAGTTACAGCTCGAAATCGGGACTTATAAGAGGAAGAAGTCCAATTCTTTTTGGTTCTCTTATGTTATTCTTTCCAACGCATCTCACATTGCTCAAAATTTGGAGTTCATACTGCTCCAATTATGAATGATTACATATAACAACTTGGGAACTTTTTGATGCACATAGGTATGCAACATTTGTACAAGAATAAGTTGCAAAATTTCGCTCAGAAGAAAAACCTCACTTTACCTGTATACACATGTGAGCGTGATGGCCCACCCCATGCTAGTCGTTTTCGTTGTAAAGTGGAAATCGATGGAAAAACTTATGAAAGTCCAGAATTTCATGCCACATTAAAAGATGCTGAGAATGCAGTCGCAAAAGTTGCTTTACTGTCATCATGTCAAGATGGAGTTCAAGAGGCTAGTATTCCAATTCAAACCAACTTTCTGGATGTGGTTTTGTGCTTAAATGAAGTACCCTTATCTGTTACTTCTACTAATTTCTGGATGTTTATTTCGTTTATAAATTATAGGACTCTGGCCTTTACAAAAATCTGTTGCAAGAGATGGCCCAAAAAAAAGGTCTAGGTTTACCGGCTTATTCAACATCACAATCTGGTGAAATTCATGTTCCAGTTTTTGTTTCAACGGTGAAAATAGGAGAAGCAAATTTTGAAGGGGAACAATCGAGGACTAAGAAACAAGCTGAGATGAGTGCAGCCAAAGCTGCTTATATTAGCATAAAAGAGGGTAAGTGATTTTGGCAATAGTATACTTTTTTTTGTCTGTTTTGGTTCCAAGCATGGCTTTCAATTGCACGTTTTTTATTTTATGAGGTTTCGGTAGGCAATGTGTATTAGTTTATGCCATGATGGGACATGGGAGTCGATGGACTAAAGCAGAAAATATCTATCCTCGTGTTTAACTATTGATGACTAGTTATTGCTCAGCTTTATAGCATTTACTATCTTTTGTGCAATTGTAATCCAGGGAAGTCGAGTTCTACGTCTCCTAGAGGACGAGCTTCTCCTCAAGGCATCTCATGTAGGTTGCAATCCAGTGTCAGCACTGACCTGGAACTGCAAGTGAGATCCAGTCCTGTAATTTCACATCCGGCATTTGAGAAACAACCCAATGATGGAGGTGGTTTTGCCCTTTAAGACTGTTATTATATTTGGTGTTCTTTTCCTTGGCTATTACATTATATGAACTGATGGCATGCAATCAAAAGTATGCATAAATCCGCACCCAAATATGACATAAAAATGTTATTCAAACATTGAAACATGTTAGATACACCATCCTTTTAGTCCACCAAGTTTCTGATTGTTGTCATTTGATATTATTTGTGCTATATTTGTTAGTCACAGTCTTATATTCCATGTTTAGGATCTCAAAGCATTTCAACAAGAAAGAGAGCTCCATCTTCTTGTGACATTGATCATGAAGTTTCTCGTGATATTGCTATATCATCCCGTAATGTTGCTCAACCTGGTAACACCAATGATTACGTTTTGAATTTAGTCTCAAAGCTAGAAGCCGGAAAGAGTTCATCTTCCAAACGGGTCATTGTTTGCCCCCGTCAGCCGAATATGACATTTCCGAAGGATATTACTGTGTTACCAGTAAGCGATGATCAATGGGTTGCATTCTCACTCTCGACCAAAGCGAATCAATAAGCTTTGTTATGGTTTAACTCACTGTGAAGTATAATACTTCTAAAGCATAGGTAGATATATACATGCGTGTATTAACTCTTTGACTCGGAATTGTTGACGATACTTGGAACAACGTTGTTGATGTCTGATCGCTTTTGTCTTTGGGGGATTATTCGTAGTGATAAAAATGTTGGGGGGAAGGAACTGTCTTGAGTACTCAGACGTTTAATGGGGTTAAAAACGAAAATTGGAAAGCTTTCAATATTTGAACTTTTGAT

mRNA sequence

TACTACACGATGCATTCCTGGATTTGGGGGAAATTAAGTGTGAAGAAAGAAGTGAAGTCTCTCCTCAAGCTAGCACTCCACTGTCACCATCATCTTCTCAATTTCTTGATTTCCTCTCCATCTCTACCTGAATCCATTTCTTGATCGAACGCCACCTTCCAAAATCATGTTCAAAACAAAGCTTCAAGAGCTCTGTCATCGCAAATCCTACGAATTACCCGTGTATTCCGTTGTCAAGCAAGGTCAAGATCATGACCCGCGCTTTGAGGCCACAGTCACCGTCGCCGGCAACAAATTCTGTTCCCAGACTCCTTGTAAGTCTTCCAAGCAAGCACAGAACGATGCTGCTAAACTTGCTTTTGACTTCTTTTCTCTTCCTTCTTCACCCAAGCTTCAGCCATACCATCCCCAGCCATCTTTTCCGGAATCATCTCCTCCGATGGAACAACTTCGTTACAGTCCTCAATTTTCTCATCCCTCTCTGCATATTTCTTCTTTTCCACAGCCGTCCTTGCCTTCGCAATCGGACACTTTTGGTGCAACAACTAACCTGGACAACACAGTTTCTTACCCACTGAGACCACTAAAGCTTGAGGTGGCAAATGAATGTTCTGAACTTGTGGAATCCACTAAAGATTCTTCTATCACGAGTAATATGGATGTCAAATTTTCAGCACAGTCAGTTGAACCGAAAATTCAAAACACTGACAAGTCTCCCGTGGTTGATTACTTTGACAAAGAATGCAGTAAATTGACTGGTATGCAACATTTGTACAAGAATAAGTTGCAAAATTTCGCTCAGAAGAAAAACCTCACTTTACCTGTATACACATGTGAGCGTGATGGCCCACCCCATGCTAGTCGTTTTCGTTGTAAAGTGGAAATCGATGGAAAAACTTATGAAAGTCCAGAATTTCATGCCACATTAAAAGATGCTGAGAATGCAGTCGCAAAAGTTGCTTTACTGTCATCATGTCAAGATGGAGACTCTGGCCTTTACAAAAATCTGTTGCAAGAGATGGCCCAAAAAAAAGGTCTAGGTTTACCGGCTTATTCAACATCACAATCTGGTGAAATTCATGTTCCAGTTTTTGTTTCAACGGTGAAAATAGGAGAAGCAAATTTTGAAGGGGAACAATCGAGGACTAAGAAACAAGCTGAGATGAGTGCAGCCAAAGCTGCTTATATTAGCATAAAAGAGGGGAAGTCGAGTTCTACGTCTCCTAGAGGACGAGCTTCTCCTCAAGGCATCTCATGTAGGTTGCAATCCAGTGTCAGCACTGACCTGGAACTGCAAGTGAGATCCAGTCCTGTAATTTCACATCCGGCATTTGAGAAACAACCCAATGATGGAGGATCTCAAAGCATTTCAACAAGAAAGAGAGCTCCATCTTCTTGTGACATTGATCATGAAGTTTCTCGTGATATTGCTATATCATCCCGTAATGTTGCTCAACCTGGTAACACCAATGATTACGTTTTGAATTTAGTCTCAAAGCTAGAAGCCGGAAAGAGTTCATCTTCCAAACGGGTCATTGTTTGCCCCCGTCAGCCGAATATGACATTTCCGAAGGATATTACTGTGTTACCAGTAAGCGATGATCAATGGGTTGCATTCTCACTCTCGACCAAAGCGAATCAATAAGCTTTGTTATGGTTTAACTCACTGTGAAGTATAATACTTCTAAAGCATAGGTAGATATATACATGCGTGTATTAACTCTTTGACTCGGAATTGTTGACGATACTTGGAACAACGTTGTTGATGTCTGATCGCTTTTGTCTTTGGGGGATTATTCGTAGTGATAAAAATGTTGGGGGGAAGGAACTGTCTTGAGTACTCAGACGTTTAATGGGGTTAAAAACGAAAATTGGAAAGCTTTCAATATTTGAACTTTTGAT

Coding sequence (CDS)

ATGTTCAAAACAAAGCTTCAAGAGCTCTGTCATCGCAAATCCTACGAATTACCCGTGTATTCCGTTGTCAAGCAAGGTCAAGATCATGACCCGCGCTTTGAGGCCACAGTCACCGTCGCCGGCAACAAATTCTGTTCCCAGACTCCTTGTAAGTCTTCCAAGCAAGCACAGAACGATGCTGCTAAACTTGCTTTTGACTTCTTTTCTCTTCCTTCTTCACCCAAGCTTCAGCCATACCATCCCCAGCCATCTTTTCCGGAATCATCTCCTCCGATGGAACAACTTCGTTACAGTCCTCAATTTTCTCATCCCTCTCTGCATATTTCTTCTTTTCCACAGCCGTCCTTGCCTTCGCAATCGGACACTTTTGGTGCAACAACTAACCTGGACAACACAGTTTCTTACCCACTGAGACCACTAAAGCTTGAGGTGGCAAATGAATGTTCTGAACTTGTGGAATCCACTAAAGATTCTTCTATCACGAGTAATATGGATGTCAAATTTTCAGCACAGTCAGTTGAACCGAAAATTCAAAACACTGACAAGTCTCCCGTGGTTGATTACTTTGACAAAGAATGCAGTAAATTGACTGGTATGCAACATTTGTACAAGAATAAGTTGCAAAATTTCGCTCAGAAGAAAAACCTCACTTTACCTGTATACACATGTGAGCGTGATGGCCCACCCCATGCTAGTCGTTTTCGTTGTAAAGTGGAAATCGATGGAAAAACTTATGAAAGTCCAGAATTTCATGCCACATTAAAAGATGCTGAGAATGCAGTCGCAAAAGTTGCTTTACTGTCATCATGTCAAGATGGAGACTCTGGCCTTTACAAAAATCTGTTGCAAGAGATGGCCCAAAAAAAAGGTCTAGGTTTACCGGCTTATTCAACATCACAATCTGGTGAAATTCATGTTCCAGTTTTTGTTTCAACGGTGAAAATAGGAGAAGCAAATTTTGAAGGGGAACAATCGAGGACTAAGAAACAAGCTGAGATGAGTGCAGCCAAAGCTGCTTATATTAGCATAAAAGAGGGGAAGTCGAGTTCTACGTCTCCTAGAGGACGAGCTTCTCCTCAAGGCATCTCATGTAGGTTGCAATCCAGTGTCAGCACTGACCTGGAACTGCAAGTGAGATCCAGTCCTGTAATTTCACATCCGGCATTTGAGAAACAACCCAATGATGGAGGATCTCAAAGCATTTCAACAAGAAAGAGAGCTCCATCTTCTTGTGACATTGATCATGAAGTTTCTCGTGATATTGCTATATCATCCCGTAATGTTGCTCAACCTGGTAACACCAATGATTACGTTTTGAATTTAGTCTCAAAGCTAGAAGCCGGAAAGAGTTCATCTTCCAAACGGGTCATTGTTTGCCCCCGTCAGCCGAATATGACATTTCCGAAGGATATTACTGTGTTACCAGTAAGCGATGATCAATGGGTTGCATTCTCACTCTCGACCAAAGCGAATCAATAA

Protein sequence

MFKTKLQELCHRKSYELPVYSVVKQGQDHDPRFEATVTVAGNKFCSQTPCKSSKQAQNDAAKLAFDFFSLPSSPKLQPYHPQPSFPESSPPMEQLRYSPQFSHPSLHISSFPQPSLPSQSDTFGATTNLDNTVSYPLRPLKLEVANECSELVESTKDSSITSNMDVKFSAQSVEPKIQNTDKSPVVDYFDKECSKLTGMQHLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEIDGKTYESPEFHATLKDAENAVAKVALLSSCQDGDSGLYKNLLQEMAQKKGLGLPAYSTSQSGEIHVPVFVSTVKIGEANFEGEQSRTKKQAEMSAAKAAYISIKEGKSSSTSPRGRASPQGISCRLQSSVSTDLELQVRSSPVISHPAFEKQPNDGGSQSISTRKRAPSSCDIDHEVSRDIAISSRNVAQPGNTNDYVLNLVSKLEAGKSSSSKRVIVCPRQPNMTFPKDITVLPVSDDQWVAFSLSTKANQ

Homology

[Close]

BLAST of Cp4.1LG03g09420 vs. ExPASy Swiss-Prot
Match: Q5N8Z0 (Double-stranded RNA-binding protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB1 PE=2 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 3.1e-39
Identity = 160/557 (28.73%), Postives = 223/557 (40.04%), Query Frame = 0


Query: 1   MFKTKLQELCHRKSYELPVYSVVKQGQDHDPRFEATVTVAGNKF-CSQTPCKSSKQAQND 60
           M+K++LQELC ++ +  P Y+    G  H P F ATV+V G +F   +   +S+K+A N 
Sbjct: 1   MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60

Query: 61  AAKLAFDFFSLPSSPKLQPYHPQPSFPESSPPMEQLRYSPQFSHPSLHISSFPQPSLPSQ 120
           AAK AFD                                        H+SS P P  P  
Sbjct: 61  AAKAAFD----------------------------------------HLSSLPLPPPPPP 120

Query: 121 SDTFGATTNLDNTVSYPLRPLKLEVANECSELVESTKDSSITSNMDVKFSAQSVEPKIQN 180
           S+                                                          
Sbjct: 121 SEN--------------------------------------------------------- 180

Query: 181 TDKSPVVDYFDKECSKLTGMQHLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVE 240
                               Q  YK++LQ +AQKK   LP Y   R+GP HASRF+  V 
Sbjct: 181 --------------------QSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVT 240

Query: 241 IDGKTYESPEFHATLKDAENAVAKVALLSSCQDGDSG--------LYKNLLQEMAQKKGL 300
           +DGK +ESPE+  T+K+AE+A AK+AL+S  Q+  S          YKNLLQE+AQK G 
Sbjct: 241 VDGKAFESPEYFHTVKEAESAAAKLALMSLPQEASSSEQVPVQPLSYKNLLQELAQKHGF 300

Query: 301 GLPAYSTSQSGEIHVPVFVSTVKIGEANFEGEQSRTKKQAEMSAAKAAYISIKEGKS--- 360
            LP YST+  G + VP+F STV   + +F+GE + TKKQAEM+AA+ A+   ++ +    
Sbjct: 301 SLPVYSTTSDGSVQVPMFKSTVVFQDGSFQGEPANTKKQAEMNAARVAFQHFEDRRKNAL 360

Query: 361 SSTSPRGRASPQG---ISCRLQSSVSTDLELQVRSSPVISHPAFEKQPND----GGSQSI 420
           SST  RG    QG   IS   Q  ++  +     +S   SH A      D    G +  +
Sbjct: 361 SSTVLRGPHLGQGTVHISAG-QVKIAEPVFSVPLASTATSHSATGATDRDYHSLGSTNPL 420

Query: 421 STRK--------------------------------RAPSSCDIDHEVSRDIAISSRNVA 480
              K                                 +P    ++   S  +A S+  V+
Sbjct: 421 PIAKSTNCADVHIQPCEFKDEKPAFPEPKTVLEVMDSSPELTPLEDAYSAPVA-STSTVS 438

Query: 481 QPGNTNDYV------------------LNLVSKLEAGKSSSSKRVIVCPRQPNMTFPKDI 489
             G  +D +                   + VS    G S  + RV V PR+P++  P+  
Sbjct: 481 SSGCGSDPLASASTVNSTGCGSVPLASASTVSSTGCGCSLLTNRVQVYPRRPDLVLPEGA 438

[Close]

BLAST of Cp4.1LG03g09420 vs. ExPASy Swiss-Prot
Match: Q8H1D4 (Double-stranded RNA-binding protein 4 OS=Arabidopsis thaliana OX=3702 GN=DBR4 PE=1 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 3.4e-38
Identity = 92/191 (48.17%), Postives = 117/191 (61.26%), Query Frame = 0


Query: 199 MQHLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEIDGKTYESPEFHATLKDAE 258
           M H+YK +LQ +A + NL LPVY  ER+GPPHA RFRC V   G+T++S EF  TLK AE
Sbjct: 1   MDHVYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAE 60

Query: 259 NAVAKVALLSSCQDGDSGL---YKNLLQEMAQKKGLGLPAYSTSQSGEIHVPVFVSTVKI 318
           +A AK+A+ S       G+   YKNLLQE+AQK+   LP Y+T+ SG  H P F STV+ 
Sbjct: 61  HAAAKIAVASLTPQSPEGIDVAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVEF 120

Query: 319 GEANFEGEQSRTKKQAEMSAAKAAYISIKEGKSSSTSPRGRASPQGISCRLQSSVSTDLE 378
               F GE+++TKK AEMSAAK A++SIK G S+ T           S  L S    D+ 
Sbjct: 121 AGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTG----------SPTLPSERQEDVN 180

Query: 379 LQVRSSPVISH 387
             V+SSP   H
Sbjct: 181 SNVKSSPQEIH 181

[Close]

BLAST of Cp4.1LG03g09420 vs. ExPASy Swiss-Prot
Match: Q9AV50 (Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB6 PE=2 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 4.1e-31
Identity = 75/176 (42.61%), Postives = 108/176 (61.36%), Query Frame = 0


Query: 202 LYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEIDGKTYESPEFHATLKDAENAV 261
           +YKN+LQ  AQ+    LP YTC R+GP HA RF+  V  +G+ +ESP F  TL+ AE+A 
Sbjct: 1   MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60

Query: 262 AKVALLSSCQDG-----------DSGLYKNLLQEMAQKKGLGLPAYSTSQSGEIHVPVFV 321
           A+VAL +  + G           ++G+YKNLLQE+AQ+ G  LP+Y+T +SG  H+PVF 
Sbjct: 61  AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120

Query: 322 STVKIGEANFEGEQSRTKKQAEMSAAKAAYIS----IKEGKSSSTSPRGRASPQGI 363
            TV++    F G+ ++ KKQAE +AA AA+ S    +++  SSS  P      + I
Sbjct: 121 CTVELAGITFTGDPAKNKKQAEKNAASAAWSSLRQLVRQEASSSNEPESNDEQEQI 176

[Close]

BLAST of Cp4.1LG03g09420 vs. ExPASy Swiss-Prot
Match: Q9LJF5 (Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=DRB3 PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.5e-30
Identity = 76/179 (42.46%), Postives = 110/179 (61.45%), Query Frame = 0


Query: 202 LYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEIDGKTYESPEFHATLKDAENAV 261
           +YKN+LQ  AQ+   +LP YTC R+GP HA RF+  V  +G+ +ESP + +TL+ AE++ 
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 262 AKVALLSSCQDG-----------DSGLYKNLLQEMAQKKGLGLPAYSTSQSGEIHVPVFV 321
           A+VAL +    G           ++G+YKNLLQE A + GL LP Y++ +SG  H+P F 
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query: 322 STVKIGEANFEGEQSRTKKQAEMSAAKAAYISIKEGKSSSTSP-RGRASPQGISCRLQS 369
            TV++   +F GE ++TKKQAE +AA AA+ S++  K     P RG    Q I  R+ S
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLR--KMPRLDPLRGEEKEQEIVARVLS 177

[Close]

BLAST of Cp4.1LG03g09420 vs. ExPASy Swiss-Prot
Match: Q9SKN2 (Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=DRB2 PE=1 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.0e-29
Identity = 72/163 (44.17%), Postives = 106/163 (65.03%), Query Frame = 0


Query: 202 LYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEIDGKTYESPEFHATLKDAENAV 261
           +YKN+LQ  AQ+    LP YTC R+GP HA RF+  V  +G+ +ESP++ +TL+ AE++ 
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 262 AKVALLSSCQDG-----------DSGLYKNLLQEMAQKKGLGLPAYSTSQSGEIHVPVFV 321
           A+VAL +    G           ++G+YKNLLQE+AQ+ G  LP Y+T +SG  H PVF 
Sbjct: 61  AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120

Query: 322 STVKIGEANFEGEQSRTKKQAEMSAAKAAYISIKE-GKSSSTS 353
            TV++    F G+ ++ KKQAE +AA AA+ S+K+  K +S+S
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSS 163

[Close]

BLAST of Cp4.1LG03g09420 vs. NCBI nr
Match: XP_023527472.1 (double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 964 bits (2491), Expect = 0.0
Identity = 492/495 (99.39%), Postives = 492/495 (99.39%), Query Frame = 0


Query: 1   MFKTKLQELCHRKSYELPVYSVVKQGQDHDPRFEATVTVAGNKFCSQTPCKSSKQAQNDA 60
           MFKTKLQELCHRKSYELPVYSVVKQGQDHDPRFEATVTVAGNKFCSQTPCKSSKQAQNDA
Sbjct: 1   MFKTKLQELCHRKSYELPVYSVVKQGQDHDPRFEATVTVAGNKFCSQTPCKSSKQAQNDA 60

Query: 61  AKLAFDFFSLPSSPKLQPYHPQPSFPESSPPMEQLRYSPQFSHPSLHISSFPQPSLPSQS 120
           AKLAFDFFSLPSSPKLQPYHPQPSFPESSPPMEQLRYSPQFSHPSLHISSFPQPSLPSQS
Sbjct: 61  AKLAFDFFSLPSSPKLQPYHPQPSFPESSPPMEQLRYSPQFSHPSLHISSFPQPSLPSQS 120

Query: 121 DTFGATTNLDNTVSYPLRPLKLEVANECSELVESTKDSSITSNMDVKFSAQSVEPKIQNT 180
           DTFGATTNLDNTVSYPLRPLKLEVANECSELVESTKDSSITSNMDVKFSAQSVEPKIQNT
Sbjct: 121 DTFGATTNLDNTVSYPLRPLKLEVANECSELVESTKDSSITSNMDVKFSAQSVEPKIQNT 180

Query: 181 DKSPVVDYFDKECSKLTGMQHLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEI 240
           DKSPVVDYFDKECSKLTGMQHLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEI
Sbjct: 181 DKSPVVDYFDKECSKLTGMQHLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEI 240

Query: 241 DGKTYESPEFHATLKDAENAVAKVALLSSCQDG---DSGLYKNLLQEMAQKKGLGLPAYS 300
           DGKTYESPEFHATLKDAENAVAKVALLSSCQDG   DSGLYKNLLQEMAQKKGLGLPAYS
Sbjct: 241 DGKTYESPEFHATLKDAENAVAKVALLSSCQDGVQEDSGLYKNLLQEMAQKKGLGLPAYS 300

Query: 301 TSQSGEIHVPVFVSTVKIGEANFEGEQSRTKKQAEMSAAKAAYISIKEGKSSSTSPRGRA 360
           TSQSGEIHVPVFVSTVKIGEANFEGEQSRTKKQAEMSAAKAAYISIKEGKSSSTSPRGRA
Sbjct: 301 TSQSGEIHVPVFVSTVKIGEANFEGEQSRTKKQAEMSAAKAAYISIKEGKSSSTSPRGRA 360

Query: 361 SPQGISCRLQSSVSTDLELQVRSSPVISHPAFEKQPNDGGSQSISTRKRAPSSCDIDHEV 420
           SPQGISCRLQSSVSTDLELQVRSSPVISHPAFEKQPNDGGSQSISTRKRAPSSCDIDHEV
Sbjct: 361 SPQGISCRLQSSVSTDLELQVRSSPVISHPAFEKQPNDGGSQSISTRKRAPSSCDIDHEV 420

Query: 421 SRDIAISSRNVAQPGNTNDYVLNLVSKLEAGKSSSSKRVIVCPRQPNMTFPKDITVLPVS 480
           SRDIAISSRNVAQPGNTNDYVLNLVSKLEAGKSSSSKRVIVCPRQPNMTFPKDITVLPVS
Sbjct: 421 SRDIAISSRNVAQPGNTNDYVLNLVSKLEAGKSSSSKRVIVCPRQPNMTFPKDITVLPVS 480

Query: 481 DDQWVAFSLSTKANQ 492
           DDQWVAFSLSTKANQ
Sbjct: 481 DDQWVAFSLSTKANQ 495

[Close]

BLAST of Cp4.1LG03g09420 vs. NCBI nr
Match: KAG7018155.1 (Double-stranded RNA-binding protein 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 956 bits (2472), Expect = 0.0
Identity = 484/492 (98.37%), Postives = 489/492 (99.39%), Query Frame = 0


Query: 1   MFKTKLQELCHRKSYELPVYSVVKQGQDHDPRFEATVTVAGNKFCSQTPCKSSKQAQNDA 60
           MFKTKLQELCHRKSYELPVYSVVKQGQDHDPRFEATVTVAGNKFCSQTPCKSSKQAQNDA
Sbjct: 1   MFKTKLQELCHRKSYELPVYSVVKQGQDHDPRFEATVTVAGNKFCSQTPCKSSKQAQNDA 60

Query: 61  AKLAFDFFSLPSSPKLQPYHPQPSFPESSPPMEQLRYSPQFSHPSLHISSFPQPSLPSQS 120
           AKLAFDFFSLPSSPKL+P+HPQPSFPESSPP+EQLRYSPQFSHPSLHIS+FPQPSLPSQS
Sbjct: 61  AKLAFDFFSLPSSPKLEPFHPQPSFPESSPPLEQLRYSPQFSHPSLHISAFPQPSLPSQS 120

Query: 121 DTFGATTNLDNTVSYPLRPLKLEVANECSELVESTKDSSITSNMDVKFSAQSVEPKIQNT 180
           DTFGATTNLDNTVSYPLRP KLEVANECSELVESTKDSSITSNMDVKFSAQSVEPKIQNT
Sbjct: 121 DTFGATTNLDNTVSYPLRPEKLEVANECSELVESTKDSSITSNMDVKFSAQSVEPKIQNT 180

Query: 181 DKSPVVDYFDKECSKLTGMQHLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEI 240
           DKSPVVDYFDKECSKLTGMQHLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEI
Sbjct: 181 DKSPVVDYFDKECSKLTGMQHLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEI 240

Query: 241 DGKTYESPEFHATLKDAENAVAKVALLSSCQDGDSGLYKNLLQEMAQKKGLGLPAYSTSQ 300
           DGKTYESPEFHATLKDAENAVAKVALLSSCQDGDSGLYKNLLQEMAQKKGLGLPAYSTSQ
Sbjct: 241 DGKTYESPEFHATLKDAENAVAKVALLSSCQDGDSGLYKNLLQEMAQKKGLGLPAYSTSQ 300

Query: 301 SGEIHVPVFVSTVKIGEANFEGEQSRTKKQAEMSAAKAAYISIKEGKSSSTSPRGRASPQ 360
           SGEIHVPVFVSTVKIGEANFEGEQSRTKKQAEMSAAKAAYISIKEGKSSSTSPRGRASPQ
Sbjct: 301 SGEIHVPVFVSTVKIGEANFEGEQSRTKKQAEMSAAKAAYISIKEGKSSSTSPRGRASPQ 360

Query: 361 GISCRLQSSVSTDLELQVRSSPVISHPAFEKQPNDGGSQSISTRKRAPSSCDIDHEVSRD 420
           GISCRLQSSVSTDLELQVRSSPVISHPAFEKQPNDGGSQSISTRKRAPSSCDIDH + RD
Sbjct: 361 GISCRLQSSVSTDLELQVRSSPVISHPAFEKQPNDGGSQSISTRKRAPSSCDIDHGICRD 420

Query: 421 IAISSRNVAQPGNTNDYVLNLVSKLEAGKSSSSKRVIVCPRQPNMTFPKDITVLPVSDDQ 480
           IAISSRNVAQPGNTNDYVLNLVSKLEAGKSSSSKRVIVCPRQPNMTFPKDITVLPVSDDQ
Sbjct: 421 IAISSRNVAQPGNTNDYVLNLVSKLEAGKSSSSKRVIVCPRQPNMTFPKDITVLPVSDDQ 480

Query: 481 WVAFSLSTKANQ 492
           WVAFSLSTKANQ
Sbjct: 481 WVAFSLSTKANQ 492

[Close]

BLAST of Cp4.1LG03g09420 vs. NCBI nr
Match: KAG6581661.1 (Double-stranded RNA-binding protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 951 bits (2458), Expect = 0.0
Identity = 484/495 (97.78%), Postives = 489/495 (98.79%), Query Frame = 0


Query: 1   MFKTKLQELCHRKSYELPVYSVVKQGQDHDPRFEATVTVAGNKFCSQTPCKSSKQAQNDA 60
           MFKTKLQELCHRKSYELPVYSVVKQGQDHDPRFEATVTVAGNKFCSQTPCKSSKQAQNDA
Sbjct: 1   MFKTKLQELCHRKSYELPVYSVVKQGQDHDPRFEATVTVAGNKFCSQTPCKSSKQAQNDA 60

Query: 61  AKLAFDFFSLPSSPKLQPYHPQPSFPESSPPMEQLRYSPQFSHPSLHISSFPQPSLPSQS 120
           AKLAFDFFSLPSSPKL+P+HPQPSFPESSPP+EQLRYSPQFSHPSLHIS+FPQPSLPSQS
Sbjct: 61  AKLAFDFFSLPSSPKLEPFHPQPSFPESSPPLEQLRYSPQFSHPSLHISAFPQPSLPSQS 120

Query: 121 DTFGATTNLDNTVSYPLRPLKLEVANECSELVESTKDSSITSNMDVKFSAQSVEPKIQNT 180
           DTFGATTNLDNTVSYPLRP KLEVANECSELVESTKDSSITSNMDVKFSAQSVEPKIQNT
Sbjct: 121 DTFGATTNLDNTVSYPLRPEKLEVANECSELVESTKDSSITSNMDVKFSAQSVEPKIQNT 180

Query: 181 DKSPVVDYFDKECSKLTGMQHLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEI 240
           DKSPVVDYFDKECSKLTGMQHLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEI
Sbjct: 181 DKSPVVDYFDKECSKLTGMQHLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEI 240

Query: 241 DGKTYESPEFHATLKDAENAVAKVALLSSCQDG---DSGLYKNLLQEMAQKKGLGLPAYS 300
           DGKTYESPEFHATLKDAENAVAKVALLSSCQDG   DSGLYKNLLQEMAQKKGLGLPAYS
Sbjct: 241 DGKTYESPEFHATLKDAENAVAKVALLSSCQDGVQEDSGLYKNLLQEMAQKKGLGLPAYS 300

Query: 301 TSQSGEIHVPVFVSTVKIGEANFEGEQSRTKKQAEMSAAKAAYISIKEGKSSSTSPRGRA 360
           TSQSGEIHVPVFVSTVKIGEANFEGEQSRTKKQAEMSAAKAAYISIKEGKSSSTSPRGRA
Sbjct: 301 TSQSGEIHVPVFVSTVKIGEANFEGEQSRTKKQAEMSAAKAAYISIKEGKSSSTSPRGRA 360

Query: 361 SPQGISCRLQSSVSTDLELQVRSSPVISHPAFEKQPNDGGSQSISTRKRAPSSCDIDHEV 420
           SPQGISCRLQSSVSTDLELQVRSSPVISHPAFEKQPNDGGSQSISTRKRAPSSCDIDH +
Sbjct: 361 SPQGISCRLQSSVSTDLELQVRSSPVISHPAFEKQPNDGGSQSISTRKRAPSSCDIDHGI 420

Query: 421 SRDIAISSRNVAQPGNTNDYVLNLVSKLEAGKSSSSKRVIVCPRQPNMTFPKDITVLPVS 480
            RDIAISSRNVAQPGNTNDYVLNLVSKLEAGKSSSSKRVIVCPRQPNMTFPKDITVLPVS
Sbjct: 421 CRDIAISSRNVAQPGNTNDYVLNLVSKLEAGKSSSSKRVIVCPRQPNMTFPKDITVLPVS 480

Query: 481 DDQWVAFSLSTKANQ 492
           DDQWVAFSLSTKANQ
Sbjct: 481 DDQWVAFSLSTKANQ 495

[Close]

BLAST of Cp4.1LG03g09420 vs. NCBI nr
Match: XP_022930583.1 (double-stranded RNA-binding protein 1-like [Cucurbita moschata] >XP_022930584.1 double-stranded RNA-binding protein 1-like [Cucurbita moschata])

HSP 1 Score: 947 bits (2449), Expect = 0.0
Identity = 484/495 (97.78%), Postives = 488/495 (98.59%), Query Frame = 0


Query: 1   MFKTKLQELCHRKSYELPVYSVVKQGQDHDPRFEATVTVAGNKFCSQTPCKSSKQAQNDA 60
           MFKTKLQELCHRKSYELPVYSVVKQGQDHDPRFEATVTVAGNKFCSQTPCKSSKQAQNDA
Sbjct: 1   MFKTKLQELCHRKSYELPVYSVVKQGQDHDPRFEATVTVAGNKFCSQTPCKSSKQAQNDA 60

Query: 61  AKLAFDFFSLPSSPKLQPYHPQPSFPESSPPMEQLRYSPQFSHPSLHISSFPQPSLPSQS 120
           AKLAFDFFSLPSSPKL+P+HPQPSFPESSPP+EQLRYSPQFSHPSLHISSFPQPSLPSQS
Sbjct: 61  AKLAFDFFSLPSSPKLEPFHPQPSFPESSPPLEQLRYSPQFSHPSLHISSFPQPSLPSQS 120

Query: 121 DTFGATTNLDNTVSYPLRPLKLEVANECSELVESTKDSSITSNMDVKFSAQSVEPKIQNT 180
           DTFGAT+NLDN VSYPLRP KLEVANECSELVESTKDSSITSNMDVKFSAQSVEPKIQNT
Sbjct: 121 DTFGATSNLDNPVSYPLRPEKLEVANECSELVESTKDSSITSNMDVKFSAQSVEPKIQNT 180

Query: 181 DKSPVVDYFDKECSKLTGMQHLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEI 240
           DKSPVVDYFDKECSKLTGMQHLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFR KVEI
Sbjct: 181 DKSPVVDYFDKECSKLTGMQHLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRSKVEI 240

Query: 241 DGKTYESPEFHATLKDAENAVAKVALLSSCQDG---DSGLYKNLLQEMAQKKGLGLPAYS 300
           DGKTYESPEFHATLKDAENAVAKVALLSSCQDG   DSGLYKNLLQEMAQKKGLGLPAYS
Sbjct: 241 DGKTYESPEFHATLKDAENAVAKVALLSSCQDGVQEDSGLYKNLLQEMAQKKGLGLPAYS 300

Query: 301 TSQSGEIHVPVFVSTVKIGEANFEGEQSRTKKQAEMSAAKAAYISIKEGKSSSTSPRGRA 360
           TSQSGEIHVPVFVSTVKIGEANFEGEQSRTKKQAEMSAAKAAYISIKEGKSSSTSPRGRA
Sbjct: 301 TSQSGEIHVPVFVSTVKIGEANFEGEQSRTKKQAEMSAAKAAYISIKEGKSSSTSPRGRA 360

Query: 361 SPQGISCRLQSSVSTDLELQVRSSPVISHPAFEKQPNDGGSQSISTRKRAPSSCDIDHEV 420
           SPQGISCRLQSSVSTDLELQVRSSPVISHPAFEKQPNDGGSQSISTRKRAPSSCDIDHEV
Sbjct: 361 SPQGISCRLQSSVSTDLELQVRSSPVISHPAFEKQPNDGGSQSISTRKRAPSSCDIDHEV 420

Query: 421 SRDIAISSRNVAQPGNTNDYVLNLVSKLEAGKSSSSKRVIVCPRQPNMTFPKDITVLPVS 480
            RDIAISSRNVAQPGNTNDYVLNLVSKLEAGKSSSSKRVIVCPRQPNMTFPKDITVLPVS
Sbjct: 421 CRDIAISSRNVAQPGNTNDYVLNLVSKLEAGKSSSSKRVIVCPRQPNMTFPKDITVLPVS 480

Query: 481 DDQWVAFSLSTKANQ 492
           DDQWVAFSLSTKANQ
Sbjct: 481 DDQWVAFSLSTKANQ 495

[Close]

BLAST of Cp4.1LG03g09420 vs. NCBI nr
Match: XP_022980601.1 (double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita maxima] >XP_022980602.1 double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 934 bits (2415), Expect = 0.0
Identity = 480/500 (96.00%), Postives = 485/500 (97.00%), Query Frame = 0


Query: 1   MFKTKLQELCHRKSYELPVYSVVKQGQDHDPRFEATVTVAGNKFCSQTPCKSSKQAQNDA 60
           MFKTKLQELCHRKSYELPVYSVVKQGQDHDPRFEATVTVAGNKFCSQTPCKSSKQAQNDA
Sbjct: 1   MFKTKLQELCHRKSYELPVYSVVKQGQDHDPRFEATVTVAGNKFCSQTPCKSSKQAQNDA 60

Query: 61  AKLAFDFFSLPSSPKLQPYHPQPSFPESSPPMEQLRYSPQFSHPSLHISSFPQPSLPSQS 120
           AKLAFDFFSLPSSPKL+PYHPQPSFPESSPP+EQLRYSPQFSHPSLHISSFPQPSLPSQS
Sbjct: 61  AKLAFDFFSLPSSPKLEPYHPQPSFPESSPPLEQLRYSPQFSHPSLHISSFPQPSLPSQS 120

Query: 121 DTFGATTNLDNTVSYPLRPLKLEVANECSELVESTKDSSITSNMDVKFSAQSVEPKIQNT 180
           DTFGATTNLDNTVSYP RP+KLEVANE S LVESTKDSSITSNM VKFSAQSVEPKIQNT
Sbjct: 121 DTFGATTNLDNTVSYPQRPVKLEVANESSGLVESTKDSSITSNMGVKFSAQSVEPKIQNT 180

Query: 181 DKSPVVDYFDKECSKLTGMQHLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEI 240
           DKSPVVDYFDKECSKLTGM+HLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEI
Sbjct: 181 DKSPVVDYFDKECSKLTGMEHLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEI 240

Query: 241 DGKTYESPEFHATLKDAENAVAKVALLSSCQDG---DSGLYKNLLQEMAQKKGLGLPAYS 300
           DGKTYESPEFHATLKDAENAVAKVALLSSCQDG   DSGLYKNLLQEMAQKKGLGLP YS
Sbjct: 241 DGKTYESPEFHATLKDAENAVAKVALLSSCQDGVQEDSGLYKNLLQEMAQKKGLGLPVYS 300

Query: 301 TSQSGEIHVPVFVSTVKIGEANFEGEQSRTKKQAEMSAAKAAYISIKEGKSSST-----S 360
           TSQSGEIHVPVFVSTVKIGEANFEGEQSRTKKQAEMSAAKAAY+SIKEGKSSST     S
Sbjct: 301 TSQSGEIHVPVFVSTVKIGEANFEGEQSRTKKQAEMSAAKAAYMSIKEGKSSSTNPSIAS 360

Query: 361 PRGRASPQGISCRLQSSVSTDLELQVRSSPVISHPAFEKQPNDGGSQSISTRKRAPSSCD 420
           PRGRASPQGI C LQSSVSTDLELQVRSSPVISHPAFEKQPNDGGSQSISTRKRAPSSCD
Sbjct: 361 PRGRASPQGIPCSLQSSVSTDLELQVRSSPVISHPAFEKQPNDGGSQSISTRKRAPSSCD 420

Query: 421 IDHEVSRDIAISSRNVAQPGNTNDYVLNLVSKLEAGKSSSSKRVIVCPRQPNMTFPKDIT 480
           IDHEVSRDIAISSRNVAQPGNTNDYVLNLVSKLEAGKSSSSKRVIVCPRQPNMTFPKDIT
Sbjct: 421 IDHEVSRDIAISSRNVAQPGNTNDYVLNLVSKLEAGKSSSSKRVIVCPRQPNMTFPKDIT 480

Query: 481 VLPVSDDQWVAFSLSTKANQ 492
           VLPVSDDQWVAFSLSTKANQ
Sbjct: 481 VLPVSDDQWVAFSLSTKANQ 500

[Close]

BLAST of Cp4.1LG03g09420 vs. ExPASy TrEMBL
Match: A0A6J1EVN0 (double-stranded RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111436989 PE=4 SV=1)

HSP 1 Score: 947 bits (2449), Expect = 0.0
Identity = 484/495 (97.78%), Postives = 488/495 (98.59%), Query Frame = 0


Query: 1   MFKTKLQELCHRKSYELPVYSVVKQGQDHDPRFEATVTVAGNKFCSQTPCKSSKQAQNDA 60
           MFKTKLQELCHRKSYELPVYSVVKQGQDHDPRFEATVTVAGNKFCSQTPCKSSKQAQNDA
Sbjct: 1   MFKTKLQELCHRKSYELPVYSVVKQGQDHDPRFEATVTVAGNKFCSQTPCKSSKQAQNDA 60

Query: 61  AKLAFDFFSLPSSPKLQPYHPQPSFPESSPPMEQLRYSPQFSHPSLHISSFPQPSLPSQS 120
           AKLAFDFFSLPSSPKL+P+HPQPSFPESSPP+EQLRYSPQFSHPSLHISSFPQPSLPSQS
Sbjct: 61  AKLAFDFFSLPSSPKLEPFHPQPSFPESSPPLEQLRYSPQFSHPSLHISSFPQPSLPSQS 120

Query: 121 DTFGATTNLDNTVSYPLRPLKLEVANECSELVESTKDSSITSNMDVKFSAQSVEPKIQNT 180
           DTFGAT+NLDN VSYPLRP KLEVANECSELVESTKDSSITSNMDVKFSAQSVEPKIQNT
Sbjct: 121 DTFGATSNLDNPVSYPLRPEKLEVANECSELVESTKDSSITSNMDVKFSAQSVEPKIQNT 180

Query: 181 DKSPVVDYFDKECSKLTGMQHLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEI 240
           DKSPVVDYFDKECSKLTGMQHLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFR KVEI
Sbjct: 181 DKSPVVDYFDKECSKLTGMQHLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRSKVEI 240

Query: 241 DGKTYESPEFHATLKDAENAVAKVALLSSCQDG---DSGLYKNLLQEMAQKKGLGLPAYS 300
           DGKTYESPEFHATLKDAENAVAKVALLSSCQDG   DSGLYKNLLQEMAQKKGLGLPAYS
Sbjct: 241 DGKTYESPEFHATLKDAENAVAKVALLSSCQDGVQEDSGLYKNLLQEMAQKKGLGLPAYS 300

Query: 301 TSQSGEIHVPVFVSTVKIGEANFEGEQSRTKKQAEMSAAKAAYISIKEGKSSSTSPRGRA 360
           TSQSGEIHVPVFVSTVKIGEANFEGEQSRTKKQAEMSAAKAAYISIKEGKSSSTSPRGRA
Sbjct: 301 TSQSGEIHVPVFVSTVKIGEANFEGEQSRTKKQAEMSAAKAAYISIKEGKSSSTSPRGRA 360

Query: 361 SPQGISCRLQSSVSTDLELQVRSSPVISHPAFEKQPNDGGSQSISTRKRAPSSCDIDHEV 420
           SPQGISCRLQSSVSTDLELQVRSSPVISHPAFEKQPNDGGSQSISTRKRAPSSCDIDHEV
Sbjct: 361 SPQGISCRLQSSVSTDLELQVRSSPVISHPAFEKQPNDGGSQSISTRKRAPSSCDIDHEV 420

Query: 421 SRDIAISSRNVAQPGNTNDYVLNLVSKLEAGKSSSSKRVIVCPRQPNMTFPKDITVLPVS 480
            RDIAISSRNVAQPGNTNDYVLNLVSKLEAGKSSSSKRVIVCPRQPNMTFPKDITVLPVS
Sbjct: 421 CRDIAISSRNVAQPGNTNDYVLNLVSKLEAGKSSSSKRVIVCPRQPNMTFPKDITVLPVS 480

Query: 481 DDQWVAFSLSTKANQ 492
           DDQWVAFSLSTKANQ
Sbjct: 481 DDQWVAFSLSTKANQ 495

[Close]

BLAST of Cp4.1LG03g09420 vs. ExPASy TrEMBL
Match: A0A6J1IRS0 (double-stranded RNA-binding protein 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111479924 PE=4 SV=1)

HSP 1 Score: 934 bits (2415), Expect = 0.0
Identity = 480/500 (96.00%), Postives = 485/500 (97.00%), Query Frame = 0


Query: 1   MFKTKLQELCHRKSYELPVYSVVKQGQDHDPRFEATVTVAGNKFCSQTPCKSSKQAQNDA 60
           MFKTKLQELCHRKSYELPVYSVVKQGQDHDPRFEATVTVAGNKFCSQTPCKSSKQAQNDA
Sbjct: 1   MFKTKLQELCHRKSYELPVYSVVKQGQDHDPRFEATVTVAGNKFCSQTPCKSSKQAQNDA 60

Query: 61  AKLAFDFFSLPSSPKLQPYHPQPSFPESSPPMEQLRYSPQFSHPSLHISSFPQPSLPSQS 120
           AKLAFDFFSLPSSPKL+PYHPQPSFPESSPP+EQLRYSPQFSHPSLHISSFPQPSLPSQS
Sbjct: 61  AKLAFDFFSLPSSPKLEPYHPQPSFPESSPPLEQLRYSPQFSHPSLHISSFPQPSLPSQS 120

Query: 121 DTFGATTNLDNTVSYPLRPLKLEVANECSELVESTKDSSITSNMDVKFSAQSVEPKIQNT 180
           DTFGATTNLDNTVSYP RP+KLEVANE S LVESTKDSSITSNM VKFSAQSVEPKIQNT
Sbjct: 121 DTFGATTNLDNTVSYPQRPVKLEVANESSGLVESTKDSSITSNMGVKFSAQSVEPKIQNT 180

Query: 181 DKSPVVDYFDKECSKLTGMQHLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEI 240
           DKSPVVDYFDKECSKLTGM+HLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEI
Sbjct: 181 DKSPVVDYFDKECSKLTGMEHLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEI 240

Query: 241 DGKTYESPEFHATLKDAENAVAKVALLSSCQDG---DSGLYKNLLQEMAQKKGLGLPAYS 300
           DGKTYESPEFHATLKDAENAVAKVALLSSCQDG   DSGLYKNLLQEMAQKKGLGLP YS
Sbjct: 241 DGKTYESPEFHATLKDAENAVAKVALLSSCQDGVQEDSGLYKNLLQEMAQKKGLGLPVYS 300

Query: 301 TSQSGEIHVPVFVSTVKIGEANFEGEQSRTKKQAEMSAAKAAYISIKEGKSSST-----S 360
           TSQSGEIHVPVFVSTVKIGEANFEGEQSRTKKQAEMSAAKAAY+SIKEGKSSST     S
Sbjct: 301 TSQSGEIHVPVFVSTVKIGEANFEGEQSRTKKQAEMSAAKAAYMSIKEGKSSSTNPSIAS 360

Query: 361 PRGRASPQGISCRLQSSVSTDLELQVRSSPVISHPAFEKQPNDGGSQSISTRKRAPSSCD 420
           PRGRASPQGI C LQSSVSTDLELQVRSSPVISHPAFEKQPNDGGSQSISTRKRAPSSCD
Sbjct: 361 PRGRASPQGIPCSLQSSVSTDLELQVRSSPVISHPAFEKQPNDGGSQSISTRKRAPSSCD 420

Query: 421 IDHEVSRDIAISSRNVAQPGNTNDYVLNLVSKLEAGKSSSSKRVIVCPRQPNMTFPKDIT 480
           IDHEVSRDIAISSRNVAQPGNTNDYVLNLVSKLEAGKSSSSKRVIVCPRQPNMTFPKDIT
Sbjct: 421 IDHEVSRDIAISSRNVAQPGNTNDYVLNLVSKLEAGKSSSSKRVIVCPRQPNMTFPKDIT 480

Query: 481 VLPVSDDQWVAFSLSTKANQ 492
           VLPVSDDQWVAFSLSTKANQ
Sbjct: 481 VLPVSDDQWVAFSLSTKANQ 500

[Close]

BLAST of Cp4.1LG03g09420 vs. ExPASy TrEMBL
Match: A0A6J1IZS6 (double-stranded RNA-binding protein 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111479924 PE=4 SV=1)

HSP 1 Score: 825 bits (2131), Expect = 5.14e-300
Identity = 431/495 (87.07%), Postives = 436/495 (88.08%), Query Frame = 0


Query: 1   MFKTKLQELCHRKSYELPVYSVVKQGQDHDPRFEATVTVAGNKFCSQTPCKSSKQAQNDA 60
           MFKTKLQELCHRKSYELPVYSVVKQGQDHDPRFEATVTVAGNKFCSQTPCKSSKQAQNDA
Sbjct: 1   MFKTKLQELCHRKSYELPVYSVVKQGQDHDPRFEATVTVAGNKFCSQTPCKSSKQAQNDA 60

Query: 61  AKLAFDFFSLPSSPKLQPYHPQPSFPESSPPMEQLRYSPQFSHPSLHISSFPQPSLPSQS 120
           AKLAFDFFSLPSSPKL+PYHPQPSFPESSPP+EQLRYSPQFSHPSLHISSFPQPSLPSQS
Sbjct: 61  AKLAFDFFSLPSSPKLEPYHPQPSFPESSPPLEQLRYSPQFSHPSLHISSFPQPSLPSQS 120

Query: 121 DTFGATTNLDNTVSYPLRPLKLEVANECSELVESTKDSSITSNMDVKFSAQSVEPKIQNT 180
           DTFGATTNLDNTVSYP RP+KLEVANE S LVESTKDSSITSNM VKFSAQSVEPKIQNT
Sbjct: 121 DTFGATTNLDNTVSYPQRPVKLEVANESSGLVESTKDSSITSNMGVKFSAQSVEPKIQNT 180

Query: 181 DKSPVVDYFDKECSKLTGMQHLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEI 240
           DKSPVVDYFDKECSKLTGM+HLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEI
Sbjct: 181 DKSPVVDYFDKECSKLTGMEHLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEI 240

Query: 241 DGKTYESPEFHATLKDAENAVAKVALLSSCQDG---DSGLYKNLLQEMAQKKGLGLPAYS 300
           DGKTYESPEFHATLKDAENAVAKVALLSSCQDG   DSGLYKNLLQEMAQKKGLGLP YS
Sbjct: 241 DGKTYESPEFHATLKDAENAVAKVALLSSCQDGVQEDSGLYKNLLQEMAQKKGLGLPVYS 300

Query: 301 TSQSGEIHVPVFVSTVKIGEANFEGEQSRTKKQAEMSAAKAAYISIKEGKSSSTSPRGRA 360
           TSQSGEIHVPVFVSTVKIGEANFEGEQSRTKKQAEMSAAKAAY+SIKEG           
Sbjct: 301 TSQSGEIHVPVFVSTVKIGEANFEGEQSRTKKQAEMSAAKAAYMSIKEG----------- 360

Query: 361 SPQGISCRLQSSVSTDLELQVRSSPVISHPAFEKQPNDGGSQSISTRKRAPSSCDIDHEV 420
                                                   SQSISTRKRAPSSCDIDHEV
Sbjct: 361 ----------------------------------------SQSISTRKRAPSSCDIDHEV 420

Query: 421 SRDIAISSRNVAQPGNTNDYVLNLVSKLEAGKSSSSKRVIVCPRQPNMTFPKDITVLPVS 480
           SRDIAISSRNVAQPGNTNDYVLNLVSKLEAGKSSSSKRVIVCPRQPNMTFPKDITVLPVS
Sbjct: 421 SRDIAISSRNVAQPGNTNDYVLNLVSKLEAGKSSSSKRVIVCPRQPNMTFPKDITVLPVS 444

Query: 481 DDQWVAFSLSTKANQ 492
           DDQWVAFSLSTKANQ
Sbjct: 481 DDQWVAFSLSTKANQ 444

[Close]

BLAST of Cp4.1LG03g09420 vs. ExPASy TrEMBL
Match: A0A1S3CMT3 (double-stranded RNA-binding protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502699 PE=4 SV=1)

HSP 1 Score: 635 bits (1637), Expect = 8.87e-225
Identity = 347/499 (69.54%), Postives = 379/499 (75.95%), Query Frame = 0


Query: 1   MFKTKLQELCHRKSYELPVYSVVKQGQDHDPRFEATVTVAGNKFCSQTPCKSSKQAQNDA 60
           MFKTKLQELCHRKSY+LP YSVVKQGQDHDPRFEATVTV G +FCS TP KSSKQAQNDA
Sbjct: 1   MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSSTPSKSSKQAQNDA 60

Query: 61  AKLAFDFFSLPSSPK-LQPYHPQPSFPESSPPMEQLRYSPQFSHPSLHISSFPQPSLPSQ 120
           AKLAFDFFSLPS P+  Q   PQP  PESS P + +     FS PSL +SSFPQPSLPSQ
Sbjct: 61  AKLAFDFFSLPSLPQPSQQLCPQPVLPESSSPPKLIPSILPFSPPSLDLSSFPQPSLPSQ 120

Query: 121 SDTFGATTNLDNTVSYPLRP-LKLEVANECSELVESTKDSSITSNMDVKFSAQSVEPKIQ 180
              FGA  NLDN V+ P RP +KLEVAN+ SEL ES+KDS I SNMDVKF+ QSVEPKI 
Sbjct: 121 LGNFGAIANLDNKVTSPPRPEVKLEVANKSSELKESSKDSPIMSNMDVKFAGQSVEPKIL 180

Query: 181 NTDKSPVVDYFDKECSKLTGMQHLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKV 240
           NTDKSPVV+ FDKEC KLTGMQHLYKNKLQNF+QK++LTLP+YTCERDGPPHASRFRCKV
Sbjct: 181 NTDKSPVVEDFDKECLKLTGMQHLYKNKLQNFSQKRSLTLPMYTCERDGPPHASRFRCKV 240

Query: 241 EIDGKTYESPEFHATLKDAENAVAKVALLSSCQDG-----DSGLYKNLLQEMAQKKGLGL 300
           EIDGKTY SPEFH TLKDAENAVAKVAL+  CQDG     DSGLYKNLLQEMAQK GLGL
Sbjct: 241 EIDGKTYGSPEFHGTLKDAENAVAKVALMCLCQDGAQEDSDSGLYKNLLQEMAQKGGLGL 300

Query: 301 PAYSTSQSGEIHVPVFVSTVKIGEANFEGEQSRTKKQAEMSAAKAAYISIKEGKSSSTSP 360
           PAYSTSQSGE+HVPVFVSTVK+GE NFEG+ SRTKKQAEMSAAK A+ +IKEG       
Sbjct: 301 PAYSTSQSGEVHVPVFVSTVKVGEENFEGKPSRTKKQAEMSAAKVAFFTIKEG------- 360

Query: 361 RGRASPQGISCRLQSSVSTDLELQVRSSPVISHPAFEKQPNDGGSQSISTRKRAPSSCDI 420
                                                       SQSISTRKRAPS CD+
Sbjct: 361 --------------------------------------------SQSISTRKRAPS-CDL 420

Query: 421 DHEVSRDIAISSRNVAQPGNTNDYVLNLVSKLEAGKSSSSKRVIVCPRQPNMTFPKDITV 480
             EV R IA SS NVAQPG +NDYV  +VSKLEAGKSSSSKR+ VCPRQPNMT PK+ +V
Sbjct: 421 AIEVPRAIATSSHNVAQPGESNDYVSRIVSKLEAGKSSSSKRIFVCPRQPNMTIPKESSV 447

Query: 481 LPVSDDQWVAFSLSTKANQ 492
           LP+SDDQWVAFS+ T ++Q
Sbjct: 481 LPISDDQWVAFSVETGSSQ 447

[Close]

BLAST of Cp4.1LG03g09420 vs. ExPASy TrEMBL
Match: A0A6J1D6X0 (double-stranded RNA-binding protein 1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017818 PE=4 SV=1)

HSP 1 Score: 610 bits (1574), Expect = 2.78e-214
Identity = 349/522 (66.86%), Postives = 402/522 (77.01%), Query Frame = 0


Query: 1   MFKTKLQELCHRKSYELPVYSVVKQGQDHDPRFEATVTVAGNKFCSQTPCKSSKQAQNDA 60
           M+K+KLQELCHRKS +LP YSV KQGQDHDPRFEA VTV   +F SQTPCKSSKQAQN+A
Sbjct: 1   MYKSKLQELCHRKSCKLPEYSVFKQGQDHDPRFEAIVTVNDKEFRSQTPCKSSKQAQNEA 60

Query: 61  AKLAFDFFSLPSSP-----------KLQP--------YHPQPSFPESSPPMEQLRYSPQF 120
           AKLAFDFFSLPSSP           +LQP        + PQP FP SSPP EQL    QF
Sbjct: 61  AKLAFDFFSLPSSPSCPQPQPQPQPQLQPQPPLQPKQHRPQPLFPMSSPPPEQLHCISQF 120

Query: 121 SHPSLHISSFPQPSLPSQSDTFGATTNLDNTVSYPLRP-LKLEVANECSELVESTKDSSI 180
             PSL ISSFPQPSLPS   TF A T LD+ +S P RP  KLEVANE SE+ ESTKDSS+
Sbjct: 121 PQPSLSISSFPQPSLPSHLGTFDARTKLDDKLSSPWRPEAKLEVANETSEIEESTKDSSV 180

Query: 181 TS-NMDVKFSAQ-SVEPKIQNTDKSPVVDYFDKECSKLTGMQHLYKNKLQNFAQKKNLTL 240
            + N D+K + + SV+P +Q+T++SPV D  DK  +KLTGMQHL+KN+LQNFAQK+NLTL
Sbjct: 181 MNYNTDIKCTTEESVQPNVQDTNQSPVDDDIDKGFTKLTGMQHLHKNQLQNFAQKRNLTL 240

Query: 241 PVYTCERDGPPHASRFRCKVEIDGKTYESPEFHATLKDAENAVAKVALLSSCQDG---DS 300
           P+YTCERDGPPHASRFRCKVEI G+TYES E  ATLKDAENAVAKVALLS CQDG   + 
Sbjct: 241 PIYTCERDGPPHASRFRCKVEIGGRTYESSELFATLKDAENAVAKVALLS-CQDGAQENP 300

Query: 301 GLYKNLLQEMAQKKGLGLPAYSTSQSGEIHVPVFVSTVKIGEANFEGEQSRTKKQAEMSA 360
           GLYKN LQEMAQK+GLGLPAYST QSGE+H P+FVS VK+GE  FEG+QSRTKKQAEMSA
Sbjct: 301 GLYKNFLQEMAQKRGLGLPAYSTLQSGEVHAPIFVSIVKVGEETFEGQQSRTKKQAEMSA 360

Query: 361 AKAAYISIKEGKSSS-TSPRGRASP-QGISCRLQSSVSTDLELQVRSSPVISHPAFEKQP 420
           AK AYIS+KEGK+    SP G+AS  + +S   QS+VST++EL VRSSP I     EKQP
Sbjct: 361 AKVAYISLKEGKNHLIASPGGQASQVEVVSSSSQSNVSTNMEL-VRSSPSI-----EKQP 420

Query: 421 NDGGSQSISTRKRAPSSCDIDHEVSRDIAISSRNVAQ---PGNTNDYVLNLVSKLEAGKS 480
           NDGG  SISTRKRAPS CD+  EV        +NVAQ   P  +N+YVLNL+SKLEAGKS
Sbjct: 421 NDGGPCSISTRKRAPS-CDLGSEV--------QNVAQHDVPSESNNYVLNLISKLEAGKS 480

Query: 481 SSSKRVIVCPRQPNMTFPKDITVLPVSDDQWVAFSLSTKANQ 492
           SSSKR+ VCPR+PNM FP+D T+L +SDD+WVAFSLS +A+Q
Sbjct: 481 SSSKRIFVCPREPNMKFPQDSTILSMSDDKWVAFSLSNEASQ 506

[Close]

BLAST of Cp4.1LG03g09420 vs. TAIR 10
Match: AT3G62800.1 (double-stranded-RNA-binding protein 4 )

HSP 1 Score: 161.0 bits (406), Expect = 2.4e-39
Identity = 92/191 (48.17%), Postives = 117/191 (61.26%), Query Frame = 0


Query: 199 MQHLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEIDGKTYESPEFHATLKDAE 258
           M H+YK +LQ +A + NL LPVY  ER+GPPHA RFRC V   G+T++S EF  TLK AE
Sbjct: 1   MDHVYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAE 60

Query: 259 NAVAKVALLSSCQDGDSGL---YKNLLQEMAQKKGLGLPAYSTSQSGEIHVPVFVSTVKI 318
           +A AK+A+ S       G+   YKNLLQE+AQK+   LP Y+T+ SG  H P F STV+ 
Sbjct: 61  HAAAKIAVASLTPQSPEGIDVAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVEF 120

Query: 319 GEANFEGEQSRTKKQAEMSAAKAAYISIKEGKSSSTSPRGRASPQGISCRLQSSVSTDLE 378
               F GE+++TKK AEMSAAK A++SIK G S+ T           S  L S    D+ 
Sbjct: 121 AGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTG----------SPTLPSERQEDVN 180

Query: 379 LQVRSSPVISH 387
             V+SSP   H
Sbjct: 181 SNVKSSPQEIH 181

[Close]

BLAST of Cp4.1LG03g09420 vs. TAIR 10
Match: AT3G62800.2 (double-stranded-RNA-binding protein 4 )

HSP 1 Score: 161.0 bits (406), Expect = 2.4e-39
Identity = 92/191 (48.17%), Postives = 117/191 (61.26%), Query Frame = 0


Query: 199 MQHLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEIDGKTYESPEFHATLKDAE 258
           M H+YK +LQ +A + NL LPVY  ER+GPPHA RFRC V   G+T++S EF  TLK AE
Sbjct: 1   MDHVYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAE 60

Query: 259 NAVAKVALLSSCQDGDSGL---YKNLLQEMAQKKGLGLPAYSTSQSGEIHVPVFVSTVKI 318
           +A AK+A+ S       G+   YKNLLQE+AQK+   LP Y+T+ SG  H P F STV+ 
Sbjct: 61  HAAAKIAVASLTPQSPEGIDVAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVEF 120

Query: 319 GEANFEGEQSRTKKQAEMSAAKAAYISIKEGKSSSTSPRGRASPQGISCRLQSSVSTDLE 378
               F GE+++TKK AEMSAAK A++SIK G S+ T           S  L S    D+ 
Sbjct: 121 AGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTG----------SPTLPSERQEDVN 180

Query: 379 LQVRSSPVISH 387
             V+SSP   H
Sbjct: 181 SNVKSSPQEIH 181

[Close]

BLAST of Cp4.1LG03g09420 vs. TAIR 10
Match: AT3G62800.3 (double-stranded-RNA-binding protein 4 )

HSP 1 Score: 161.0 bits (406), Expect = 2.4e-39
Identity = 92/191 (48.17%), Postives = 117/191 (61.26%), Query Frame = 0


Query: 199 MQHLYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEIDGKTYESPEFHATLKDAE 258
           M H+YK +LQ +A + NL LPVY  ER+GPPHA RFRC V   G+T++S EF  TLK AE
Sbjct: 1   MDHVYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAE 60

Query: 259 NAVAKVALLSSCQDGDSGL---YKNLLQEMAQKKGLGLPAYSTSQSGEIHVPVFVSTVKI 318
           +A AK+A+ S       G+   YKNLLQE+AQK+   LP Y+T+ SG  H P F STV+ 
Sbjct: 61  HAAAKIAVASLTPQSPEGIDVAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVEF 120

Query: 319 GEANFEGEQSRTKKQAEMSAAKAAYISIKEGKSSSTSPRGRASPQGISCRLQSSVSTDLE 378
               F GE+++TKK AEMSAAK A++SIK G S+ T           S  L S    D+ 
Sbjct: 121 AGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTG----------SPTLPSERQEDVN 180

Query: 379 LQVRSSPVISH 387
             V+SSP   H
Sbjct: 181 SNVKSSPQEIH 181

[Close]

BLAST of Cp4.1LG03g09420 vs. TAIR 10
Match: AT3G26932.1 (dsRNA-binding protein 3 )

HSP 1 Score: 135.6 bits (340), Expect = 1.1e-31
Identity = 76/179 (42.46%), Postives = 110/179 (61.45%), Query Frame = 0


Query: 202 LYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEIDGKTYESPEFHATLKDAENAV 261
           +YKN+LQ  AQ+   +LP YTC R+GP HA RF+  V  +G+ +ESP + +TL+ AE++ 
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 262 AKVALLSSCQDG-----------DSGLYKNLLQEMAQKKGLGLPAYSTSQSGEIHVPVFV 321
           A+VAL +    G           ++G+YKNLLQE A + GL LP Y++ +SG  H+P F 
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query: 322 STVKIGEANFEGEQSRTKKQAEMSAAKAAYISIKEGKSSSTSP-RGRASPQGISCRLQS 369
            TV++   +F GE ++TKKQAE +AA AA+ S++  K     P RG    Q I  R+ S
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLR--KMPRLDPLRGEEKEQEIVARVLS 177

[Close]

BLAST of Cp4.1LG03g09420 vs. TAIR 10
Match: AT3G26932.2 (dsRNA-binding protein 3 )

HSP 1 Score: 135.6 bits (340), Expect = 1.1e-31
Identity = 76/179 (42.46%), Postives = 110/179 (61.45%), Query Frame = 0


Query: 202 LYKNKLQNFAQKKNLTLPVYTCERDGPPHASRFRCKVEIDGKTYESPEFHATLKDAENAV 261
           +YKN+LQ  AQ+   +LP YTC R+GP HA RF+  V  +G+ +ESP + +TL+ AE++ 
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 262 AKVALLSSCQDG-----------DSGLYKNLLQEMAQKKGLGLPAYSTSQSGEIHVPVFV 321
           A+VAL +    G           ++G+YKNLLQE A + GL LP Y++ +SG  H+P F 
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query: 322 STVKIGEANFEGEQSRTKKQAEMSAAKAAYISIKEGKSSSTSP-RGRASPQGISCRLQS 369
            TV++   +F GE ++TKKQAE +AA AA+ S++  K     P RG    Q I  R+ S
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLR--KMPRLDPLRGEEKEQEIVARVLS 177

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g09420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5N8Z0	3.1e-39	28.73	Double-stranded RNA-binding protein 1 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q8H1D4	3.4e-38	48.17	Double-stranded RNA-binding protein 4 OS=Arabidopsis thaliana OX=3702 GN=DBR4 PE...	[more]
Q9AV50	4.1e-31	42.61	Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q9LJF5	1.5e-30	42.46	Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=DRB3 PE...	[more]
Q9SKN2	1.0e-29	44.17	Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=DRB2 PE...	[more]

BLAST of Cp4.1LG03g09420 vs. NCBI nr


Match Name	Identity	Description
XP_023527472.1	99.39	double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita pepo subsp. pep...	[more]
KAG7018155.1	98.37	Double-stranded RNA-binding protein 4 [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KAG6581661.1	97.78	Double-stranded RNA-binding protein 4, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022930583.1	97.78	double-stranded RNA-binding protein 1-like [Cucurbita moschata] >XP_022930584.1 ...	[more]
XP_022980601.1	96.00	double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita maxima] >XP_022...	[more]

BLAST of Cp4.1LG03g09420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EVN0	0.0	97.78	double-stranded RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1IRS0	0.0	96.00	double-stranded RNA-binding protein 4-like isoform X1 OS=Cucurbita maxima OX=366...	[more]
A0A6J1IZS6	5.14e-300	87.07	double-stranded RNA-binding protein 1-like isoform X2 OS=Cucurbita maxima OX=366...	[more]
A0A1S3CMT3	8.87e-225	69.54	double-stranded RNA-binding protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1D6X0	2.78e-214	66.86	double-stranded RNA-binding protein 1-like isoform X1 OS=Momordica charantia OX=...	[more]

BLAST of Cp4.1LG03g09420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G62800.1	2.4e-39	48.17	double-stranded-RNA-binding protein 4	[more]
AT3G62800.2	2.4e-39	48.17	double-stranded-RNA-binding protein 4	[more]
AT3G62800.3	2.4e-39	48.17	double-stranded-RNA-binding protein 4	[more]
AT3G26932.1	1.1e-31	42.46	dsRNA-binding protein 3	[more]
AT3G26932.2	1.1e-31	42.46	dsRNA-binding protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014720	Double-stranded RNA-binding domain	SMART	SM00358	DRBM_3	coord: 203..270 e-value: 2.5E-13 score: 60.3 coord: 278..344 e-value: 4.5E-16 score: 69.4 coord: 2..69 e-value: 1.7E-13 score: 60.9
IPR014720	Double-stranded RNA-binding domain	PFAM	PF00035	dsrm	coord: 203..266 e-value: 6.2E-13 score: 49.3 coord: 278..340 e-value: 2.6E-12 score: 47.3 coord: 3..65 e-value: 7.9E-14 score: 52.1
IPR014720	Double-stranded RNA-binding domain	PROSITE	PS50137	DS_RBD	coord: 1..70 score: 12.111038
IPR014720	Double-stranded RNA-binding domain	PROSITE	PS50137	DS_RBD	coord: 202..266 score: 10.800117
IPR014720	Double-stranded RNA-binding domain	PROSITE	PS50137	DS_RBD	coord: 277..345 score: 11.552683
None	No IPR available	GENE3D	3.30.160.20		coord: 199..268 e-value: 1.3E-23 score: 85.1
None	No IPR available	GENE3D	3.30.160.20		coord: 1..69 e-value: 1.4E-20 score: 75.3
None	No IPR available	GENE3D	3.30.160.20		coord: 272..344 e-value: 3.5E-22 score: 80.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 384..412
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 392..407
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 344..363
None	No IPR available	PANTHER	PTHR46031:SF16	DOUBLE-STRANDED RNA-BINDING PROTEIN 4	coord: 1..488
None	No IPR available	PANTHER	PTHR46031	FAMILY NOT NAMED	coord: 1..488
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 195..268
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 2..68
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 278..345
IPR044450	AtDRB-like, first double-stranded RNA binding domain, plant	CDD	cd19907	DSRM_AtDRB-like_rpt1	coord: 202..268 e-value: 4.27383E-28 score: 104.48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g09420.1	Cp4.1LG03g09420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003725	double-stranded RNA binding