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Cp4.1LG03g09300 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTTGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAACTCAGGTGTAAGAATAGGAATGAGATTCGAACCCTGCGTTATAATTTCTTGACCACCGAACTGATTGCAATAAGACCGTAAAAATAACAAAAATTCCGTCGCTACTTGGCGTTGGCGTAGCCTCGATAGGCATCTGGGAAGGAGCTTCATTCATCTGAGGTAGAGCGACTTCACGAACAGCGAGAGACGGAGAAATGGCCTGGAGAGGACAGCTATCCAAGAATTTGAAGGAGCTTCGGATCTTGCTCTGCCAAACCTCTCCTTCAAGCGCCCCCGCTAGGTATTCCGTTTCTCTTCTCTTTTACGCTTTACGATCCCTTCTAAAACCACATATCCTTCTCCTCCCCTAGCTTCTTTTCGGAGATTGTTGATTAATGGAGCTTTGGTTCTCACAGGGCATTTGTGGAAAAGACTTACAAAGAACTCAAGACTTTGAATCCCAAATTTCCAATATTGATCCGGGAATGCAGTGGAGTCGAGCCGCAATTGTGGGCAAGATATGGTACTTTAATCTCCTCTTCCTCCCAAATGATTTCATGTCCTTTTATTTTCTTCCCTTTAGGTTTCGAGTTTCTTTCGAGCTTTGCGGTTTTATTTTCTCCACATTCTTTTCATGAAGTCAATGATATGGCCGACTTGATTGATAAGCGCGATTAGCTATGTCAAATACTCTGCTGGGTAGTCTTTCCTTTGCATCGATTATTACTTTCGTTGTCTATTTGTGATGGAAGGTACTCTTTCCATGGTAGATAGTCAGGTCGTAGTATTTTGAATGCTCCATTACCAGGGATATAGTAATACCCATCTAATCGAATTCGTTCTGGGTTGATTTTGTCAAGCTTTGCAATTTTCTTTTACATTGTTCTGTGAACTGTGAAATTTGACTGGTCCTATGGTTTCTCAAGTAAAATAAAAACCAACTTGTCCTGATATAGAATCTGCTCCTACGCTGACATCTTCGTTTTACCTTCTAAATGAAGGAGAAATTAGTAGCCACTGGAGTTTTACTGTGTCCCATTTTCACTTAACTAGCATTCACCCTCGAAAGAAAATATATTGTTAGGATAAGCTGTTTTTACTTTTGGTTATGGTTGGTGGCTGATCTTTCAGGAGAGACGCTCATGAGTAGTAATGGTATAAACTTTTAGCTTCTTACAAATGCAAGGAGGGATTCATTTATTTGTTAACTTTTTTTTTCATTTTTTCTTTTGTCTTTGGCTTTCAAAAATTTTAATTGCATATGTTACAGATAACATTGTGGTAACATAAGACGTTTTCATATTAAGTGATGAGATTTAGTTCTTCACATCAATGTTTTCTAAACTATTCTTATCAAGATATATGATAAGGAATCATGAAACTATTCAGATTCAAGTTCTTTGACCAACATTTGTGTAGACTGCAGTGTATTTACACTAAAAAAATTTGTCAAATGATGAATAGCAGTATTATTATCCTTTTGGTGGTCATGGAACCTTAAGCATAAATTTGTCTTAAATATCATTGTAATTCCTTATTCAAGTTCATTTTGTACATTTCACTATTTTATTGATGGGATAATAAGTTATATAAGTTGTTATGTGGCCTCGGACTGCTTATGGAAAAATGTTCATTGGACATTATCCGGAACATTAATAGAATGTTGAAACTTGATATTTACATTCCAATTTTTTCTTTCCATGAAATCATTGGTCTGCAACTTTACTTTTGTATGAATCACGTTGCGTCATGATTTCTTCTTCTTCTTCTTTCTTTTTTTTTTTCTTCCATGAGAAACAAGTAACCTTCATTCCATTGATATGCAGAGAGAGAAGTAAGGCTATAGTCCCGAAAAGTGGGGAGAATTTACACCAAGTGAGAGCAATGTAAGCAAGGTGTTAGGAAAAAAAAAAAAAAAAAAAAAAAANAAGAGACGAAATATGTAGCTTTTTCCTTGAAGATGCGTCAATTTTGCTTGAGGCATGTTAACCAAAGGAGGATTTTGTTGAAACAGTCCCATATGACCTCTTGTTCCTTGCTGAAGAGATGCCCATGATGAGCATCTCTAAAAGAGTCATTGAAACCAAGCGAAAGAAATGAAAGATTATTCAAAGGTTTACAGAAATAAAAACATTAAAAAAAAAAAAAAACAGCTCCACAAGGAGTCCCAACACTAATTAAAAAATTTCTCCAATCGAAAAGAATAAAGCCTGATCGATAATTACAAAAAAGCAGAGACTAAAATCCACGAGTAGGTATTAAAATGAAAATTCTCCCAAATCTCATTTGCCGATCACTTCACACTCCTAAAAGACCTACTATTCTTCTCAAGCAAAAGCCCCTAAAACACTGTAAAAATTCACACCTGCCATAAAACTCGGCCTTTATCCTGAAAGGGAGATTCAAAGGGTCTCTTCAATCAAAGAAAAACAACCTCTGTTACAAACCCAACAAATCCCGATGATGCTCCCAAACTACCAAAGTGCACTTACAGTCAACCAAATAATGATCCAAACTTTCTTATGCTTGATGACAACAAGAGCACCATTGCAAGCCCAACACAAAAGAGGAGTGCTTCTGAACACAACCTAAGTTGTTAACTTTCTAATGAAGAACCTCCCACACAAAGAATTTGACCTTTTTGGGATTCTTTAACGTTTCAAAGAGAGGAGAAAGCCAAAGCTCTTGGAGGGGGAGAAGGGCCACATAGCAAGTGGAAAAAAAAAATGAACCAGGAGAGAAATCCCATGAAGGATTGGAGGATAAAAATCCAATACCCCTGTTCCTTCAACTCACCAAAGAGTCGCCTATTAGCAAATAGGGCCACTCCATTAAATAGCTTCCCTATTCGCCAAAGTGTGGTTGAACCCAAAGATCCAAAAGAAGAAAACAAAGGGGAATCTAGAGAGGGAGGACAAAGGCCACATAATGCAACCTTTTGTATAAATGATGGTACAAGCGAGGAAACACAAGCAAAGAGGTTTATTGTAAATAATTTTGAATAATTTTGAACCATCAACTAAAGTTGATTTCGTAGGAGTAAGATGAATTGTGTTACTGACAGTGAGAGTTATTGTACAATAACTAGTTATTTTTGTTGATAGTTGTTGTTAGTCAATTTGCTTGTTGATTAGTTGGTTGTTTATGTGCTCTAGTGTATTAAGTGGCGACTGCTGTATAACAATATAAAAGATGTGGCCCCATCACGATCTTAATTGAACAAGCTCTATTCTATAGGTCTCTATAGGCTGTGCAACTGTGCCCTCGAGTTCTTAGGAAAAGGTATTAAGTCTTTGTAATACTACCTTTATTATATAGAAAAAAAATTTCTCAAGTCTTTTTTGACATTAGCCTGGGCCAACAATTTCCACCCATAGAGTTCGAGAAAACTTGTTAATGAAAATTTTAGGAATGACTTTTTTTTTTGATAATGTACCTGGTAGCAAAATGTACAGTTAACTTCAGGAGGCTACTCAAAAAGAGATTGAAACATTCATCAATCTTGATCCACAAAACTTTAGAGATTCTCTCAGTGAATTGAATTTTCCCCGCAAGATCATAATCTTCACTGTCAAATTATCGTGAATCATTGGATTGTTCTGACGTGGTGGACTTGAAACAACTAATGTCTTATGTAATTTGCTAGAAATAAATAACATGGACTCAAGAATGAGAGTTTTCGAAGGTTATGAAATTTATATATCATACTTCGTAAAAGAAAAAGAAGTTGTGTCATTCTATGTGATTAAGATTCTTATTGGAAACTTGTTGCAAGTTAGCTTATTTCTTTTTCTTTCTTTTTTTGCTTCCAATGCTAATAGAGTGCTTTGTTCTCTCTTTTTTTTTTTTTTTTTTTTTTTTTCCCCATCTCCTCACTAAGAACTACAACTATCAAAGTATGAAGCCTTATCCATTCTTTTTATCAAGATATCAAGGATGTTGTTAATGTTTGCCTTGAAAGTTCGACTCACTTGAAATGTCATAGACAACCTTGACATTGTGTTGAAGTTCATTTGCCACAGTTTGGGCAGTTATATGGAAGTAGTTAAATTTTATAGATTTTGACATCTCAAAGTGTTAAAGCGGTGAATCTAGGTACTAAAGGGAAACTGAACTTTTTAATTTCATTATTTCAAGTTTAGTTCTCGAATTTTAAAAAGTATCTAAACGGTCGTGAACTTTCAATTTTCAGTCTAAAATTTTGTATCTAATATGCCATTGACTTATTAAAAAAATTTACAATGTTACTAATATATTACATATAAATTTGACTTTTACATCTACTACAATTCTAAACTTTCAATTTAGTGTCTAGTAAGTTTGTGAATTTTTAAATCGAATAGGTGAAAGATCTATTTGACACAAAATTGAAATTTTAGGGATTTGTTGGATACAAAATTAAAAGTTTAAGGGCTTATTAGAAATTCTTTAAAGTTAAGGGACTAAATAAGCATGAACTTAAAAAATGAGAACTTGGATACTTATTAAGTTGTACTTAAGGTTGTCAAACATTTATTAAAAGTTTTTTATGATTATTTTGATGAGGAACATGATTGGGGAATATGGATAGATAATAAAGAAAAACTCTTTGAACCTGGATATCCTTGGATATGCTATTTTGATGAGGAACATGATTGGGGAATATGGATAGATAATAAAGAAAAACTCTTCGAACCTGGATATCCTTGGATATGCTAAAACTAATTGAACCATGGGGCGGGAAAGGTGAAAGTAAAACTGAAAACCATGGGGCAGCAAAGGTAAAAGTAAAACCAAAAATCATGGTTGGCGGAATAGATAGGCGATGAAAAAATCATGGTGGGGGAATTGTAGATATTGGGATTTTACCTACATTTTATCAGGAGTGTTAATGATTATCAGTAGCTCCCAAATAATAGTTTTGAGTTTCTTTTGATATCTATTTTCATCTTTCCATGCGTGTTCTTATAAGTTTTGGGTCAAGGATTCCAGAATCCTTTCTGACACTTTCAAAGAGACTTGCTGTCAAATGAACAGAGTCATAAAGCGACAACCACTTGTCTTCCACAAGCCTAAGCATGGATTTAACAAGGTTATCCAGAAGAGAAATTTATTTTTTGGACTTCCAAATCATTAAGGCTTGTTCGAAGTTTAGGTTCCAAGAAGATTTGTTGGAATTACAAACTTATTCGAAGGCATTCAAAACAACATAATTCAATAAAAAATGGCAGACAGCTATATCTGAGGGTCTTCTCTAGATCTGGTGTTTGTTCAATACGTTTCATACTAGTCTCTTTAAGAAAATACCTCTTTCATTTCGAAAGTGGCTTTCTAAGGGGCCTTTATTGGTTTTGATGGCTGCTTGAGTGGACCTCCAAACACGTTTGGAAACTCCATATTGTTTTAGCTAATTATCAATCCATTCATAAAGCTGGTGATAATGGGGATTGGAATTATCTTGATGCTGTTCTGAGAATGAAAGATTTTGGTTCAAGGTGAAGGTCATGGATTTACACTTCCACAAACAATTGTAGATATTATCATTTGTAAATCGGAAGTGGAGGACATGCTTTCTTTGCTCCTTCAACTATTTGGTTTGTTCCATATCATAGGACAATTGGTGAATGCTAATGTCATAAGATTAGATATTGTTTGTTTGAAAGATAGATCATGCACCGAAATTTAAAGGATATTTATGTTCGTGTTTGGTTAATGCAACTGATTATTTTTCCTTTTTTTCTTTTTGATTTGACAGACATGGGCATTGAAAGGGTTGCTCGTCTAGAGGGTTTGAGCGAGGCACAGATCTCGAAGGCACTTGAAGACCTAGTCAAAGTTGGGGCATCCTGAAGGAGTAATCTGCTGTGCTATTGTACTGCAACAGACGTCAATAAATGCACGAGTGGAACGTTTGTTGAGATGCTTTTGTGTTTACATTCTGTTCGCTCAGCTCTTTTGAGATTATTGCTCAAATATTCATCTTCAGAAATCATGTTTCTGGTACGTATGTCTATTTGTCTATATGGAGAGTTATTGCCATAATGGTGATAATGAGTTCCACATTTTCCTCAAACAATTGGTCACAATAATTTCATAGAATTGGATACGTTCTATTTTTAGATGGAATGGATCTAAAATGCTTATTTCTATCTGAAATTTTCATCTTCATTCAAGTATCTTTTTTTATTAGATGTTCAGTTTTCATTGTT GTTGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAACTCAGGTGTAAGAATAGGAATGAGATTCGAACCCTGCGTTATAATTTCTTGACCACCGAACTGATTGCAATAAGACCGTAAAAATAACAAAAATTCCGTCGCTACTTGGCGTTGGCGTAGCCTCGATAGGCATCTGGGAAGGAGCTTCATTCATCTGAGGTAGAGCGACTTCACGAACAGCGAGAGACGGAGAAATGGCCTGGAGAGGACAGCTATCCAAGAATTTGAAGGAGCTTCGGATCTTGCTCTGCCAAACCTCTCCTTCAAGCGCCCCCGCTAGGGCATTTGTGGAAAAGACTTACAAAGAACTCAAGACTTTGAATCCCAAATTTCCAATATTGATCCGGGAATGCAGTGGAGTCGAGCCGCAATTGTGGGCAAGATATGACATGGGCATTGAAAGGGTTGCTCGTCTAGAGGGTTTGAGCGAGGCACAGATCTCGAAGGCACTTGAAGACCTAGTCAAAGTTGGGGCATCCTGAAGGAGTAATCTGCTGTGCTATTGTACTGCAACAGACGTCAATAAATGCACGAGTGGAACGTTTGTTGAGATGCTTTTGTGTTTACATTCTGTTCGCTCAGCTCTTTTGAGATTATTGCTCAAATATTCATCTTCAGAAATCATGTTTCTGGTACGTATGTCTATTTGTCTATATGGAGAGTTATTGCCATAATGGTGATAATGAGTTCCACATTTTCCTCAAACAATTGGTCACAATAATTTCATAGAATTGGATACGTTCTATTTTTAGATGGAATGGATCTAAAATGCTTATTTCTATCTGAAATTTTCATCTTCATTCAAGTATCTTTTTTTATTAGATGTTCAGTTTTCATTGTT ATGGCCTGGAGAGGACAGCTATCCAAGAATTTGAAGGAGCTTCGGATCTTGCTCTGCCAAACCTCTCCTTCAAGCGCCCCCGCTAGGGCATTTGTGGAAAAGACTTACAAAGAACTCAAGACTTTGAATCCCAAATTTCCAATATTGATCCGGGAATGCAGTGGAGTCGAGCCGCAATTGTGGGCAAGATATGACATGGGCATTGAAAGGGTTGCTCGTCTAGAGGGTTTGAGCGAGGCACAGATCTCGAAGGCACTTGAAGACCTAGTCAAAGTTGGGGCATCCTGA MAWRGQLSKNLKELRILLCQTSPSSAPARAFVEKTYKELKTLNPKFPILIRECSGVEPQLWARYDMGIERVARLEGLSEAQISKALEDLVKVGAS Homology
BLAST of Cp4.1LG03g09300 vs. ExPASy Swiss-Prot
Match: Q9FIJ2 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=At5g47890 PE=1 SV=1) HSP 1 Score: 152.9 bits (385), Expect = 1.8e-36 Identity = 70/95 (73.68%), Postives = 84/95 (88.42%), Query Frame = 0
BLAST of Cp4.1LG03g09300 vs. ExPASy Swiss-Prot
Match: P0CB79 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Pongo abelii OX=9601 GN=NDUFA2 PE=3 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 1.7e-18 Identity = 46/85 (54.12%), Postives = 58/85 (68.24%), Query Frame = 0
BLAST of Cp4.1LG03g09300 vs. ExPASy Swiss-Prot
Match: P0CB80 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Pongo pygmaeus OX=9600 GN=NDUFA2 PE=3 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 1.7e-18 Identity = 46/85 (54.12%), Postives = 58/85 (68.24%), Query Frame = 0
BLAST of Cp4.1LG03g09300 vs. ExPASy Swiss-Prot
Match: Q02370 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Bos taurus OX=9913 GN=NDUFA2 PE=1 SV=2) HSP 1 Score: 91.7 bits (226), Expect = 4.9e-18 Identity = 46/87 (52.87%), Postives = 59/87 (67.82%), Query Frame = 0
BLAST of Cp4.1LG03g09300 vs. ExPASy Swiss-Prot
Match: Q4R5E2 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Macaca fascicularis OX=9541 GN=NDUFA2 PE=3 SV=3) HSP 1 Score: 90.1 bits (222), Expect = 1.4e-17 Identity = 43/80 (53.75%), Postives = 55/80 (68.75%), Query Frame = 0
BLAST of Cp4.1LG03g09300 vs. NCBI nr
Match: XP_023526206.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 191 bits (484), Expect = 4.58e-61 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
BLAST of Cp4.1LG03g09300 vs. NCBI nr
Match: XP_022935669.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like [Cucurbita moschata] >KAG6581644.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018138.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 189 bits (479), Expect = 2.66e-60 Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0
BLAST of Cp4.1LG03g09300 vs. NCBI nr
Match: XP_022983615.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like [Cucurbita maxima]) HSP 1 Score: 186 bits (473), Expect = 2.19e-59 Identity = 93/95 (97.89%), Postives = 93/95 (97.89%), Query Frame = 0
BLAST of Cp4.1LG03g09300 vs. NCBI nr
Match: XP_008465169.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo] >KAA0037682.1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 2 [Cucumis melo var. makuwa]) HSP 1 Score: 186 bits (471), Expect = 4.41e-59 Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 0
BLAST of Cp4.1LG03g09300 vs. NCBI nr
Match: XP_038906356.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Benincasa hispida]) HSP 1 Score: 184 bits (467), Expect = 1.80e-58 Identity = 90/95 (94.74%), Postives = 93/95 (97.89%), Query Frame = 0
BLAST of Cp4.1LG03g09300 vs. ExPASy TrEMBL
Match: A0A6J1F628 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like OS=Cucurbita moschata OX=3662 GN=LOC111442457 PE=3 SV=1) HSP 1 Score: 189 bits (479), Expect = 1.29e-60 Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0
BLAST of Cp4.1LG03g09300 vs. ExPASy TrEMBL
Match: A0A6J1J6D3 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like OS=Cucurbita maxima OX=3661 GN=LOC111482169 PE=3 SV=1) HSP 1 Score: 186 bits (473), Expect = 1.06e-59 Identity = 93/95 (97.89%), Postives = 93/95 (97.89%), Query Frame = 0
BLAST of Cp4.1LG03g09300 vs. ExPASy TrEMBL
Match: A0A5A7T2I6 (NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1593G00030 PE=3 SV=1) HSP 1 Score: 186 bits (471), Expect = 2.14e-59 Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 0
BLAST of Cp4.1LG03g09300 vs. ExPASy TrEMBL
Match: A0A1S3CN67 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Cucumis melo OX=3656 GN=LOC103502835 PE=3 SV=1) HSP 1 Score: 186 bits (471), Expect = 2.14e-59 Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 0
BLAST of Cp4.1LG03g09300 vs. ExPASy TrEMBL
Match: A0A0A0LDA2 (L51_S25_CI-B8 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G845450 PE=3 SV=1) HSP 1 Score: 184 bits (467), Expect = 8.71e-59 Identity = 90/95 (94.74%), Postives = 94/95 (98.95%), Query Frame = 0
BLAST of Cp4.1LG03g09300 vs. TAIR 10
Match: AT5G47890.1 (NADH-ubiquinone oxidoreductase B8 subunit, putative ) HSP 1 Score: 152.9 bits (385), Expect = 1.3e-37 Identity = 70/95 (73.68%), Postives = 84/95 (88.42%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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