Cp4.1LG03g09270 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CACCACGTGTCTGCAGTTTCCCGTTATATCCACAGAACCCGAAAGCAATGGGACGTTGCGTTATCCATTGACAACCCTAAATCTTCGATGTTGTTTCTTGACCGCTCCATTTTCCGTTCATTTTCCTTCGCCTAGAAACTTCTCTCTTCCCCTTTTCCTCCTCCTCCTCCTCCTCCTCCACTTCATCACAACCTCCCCATTTCCATCCCCGATTATCTCGTTCTTAATGATCTTATCACCTACCATATATCCATTTAAATTTCCCCCAATTTCCCACCTCCTAATCCTCCTACTTTCTTCAATCGCTGCGATTTCAATACATTCATCCTTGATTTCAATGGCGGACGCTGTCAGCAACATTTCTTTTGCCCCCTCTTTGCGTTCTTCTAATCATCTTCCTCCACCAATTTCCGCCCTTAAATCCCTCAATTCTTCTTCCTATCCCTTGAATTGGCAACGCCTTTCTGTCAAATTACCCTCCACCTTGCGGCCGTTTTCGATCAGCGACTCCAATAGCCAAATAATAGAGTTTACAGAAGCTAGGGACATCTCCAGGAACTCTGTTTCTCCTACACGATCTTCGACGGTATCCCTAATTTTGTATTTTCATCCTCCTCCTCATATTAGGGTTTCTTTTTCTTTGTTTCTTTAGCTTCTCTGTGTTTATTTTCTTTGATTGTTGTGATATGGGTCATTATGAACAGAACTATTATGCAATTTGTTTAGTAAGCCTTTTGTTGCTATTCAATAGAGTGGGTTTCGGGTTCCAAAAGCTCAGAAATGGTGGGATAAAGGGTTGCAGCCTAACATGAAAGATGTGACTGGTGCACAAGATTTTGTGGATTCTCTTTTAAGTGCAGGGGATAAGCTTGTTATTGTTATTTTCTTCTCCCCTGGTTGTGGTGGCTGCAAAGCTCTTCACCCCAAGGTCTTTCCTCATTCTTTAGTGTCTTGGAGAATCTATGTTCCATGTTTTCCTGCTTCTGAAGTTTGTTTATGCTATACAGATGTGCCAATTTGCTGAAATGTATCCTGATATCCAATTTTTGCAAGTGAACTATGAAGAACATAAATCCATGTGTTATAGCCTTGGTGTTCATGTGCTGCCCTTCTTTCGCTTCTACAGAGGTGCGCAGGGCCGCCTTTGTAGTTTTAGCTGCACTAATGCAACGGTAAGACATCTTCGAATAGTTTGAGAGTGTTATCAGATTATAATATTTGATTGGTGTATGTTCATTGAGCTGTTTTGTGGTTTCCTCGGTGGCCGTGAGTATCAAACTTCTGTTGAGGATTGTTGGGAGGGAGTCTGACATTGGCTAATTTAGGGAATGATCATGGGTTTATAAGTAACAAATACATCTCCATTGGTATGAGGCCTTTTGAGGGAGTCGAAAGCAAAGTCATGAGAGTTTATGCTCAAAGTGGACTATATCATACCATTGTGGAGGTTCGTCGTTCCTAACATGGTATCAGAGTCATGCCCTTAACTTAGTCATGTCAATAGAATCCTCAAATGCCGAACAAAGAAGTTGTGAGTCTCGAAGGTGTAGTCAAGAGTGACTCAAGTGTTGAACAAAGGGTGTTACATTGTTCGAGGACTCCAGAGAAGGAGTCGAGCCTCTATTAAGAGGAGGTTCTTTGAGGGCTCCATAGGCCTCAAGGGAGGTTCTAAGTGTACTTTGTTTGATTGGCTAATTTAGAGAATGATCATGGGTTTAGAAGTAAGGAATACATCTCTAGTATGAGTCCTTTTGGGGGAGCCGTAAGCAAAGCCATGAGAGCTTATGCTCAAAATGGACAATATCGTACCATTGTGGAGAGTCGTGGTTCCTAACAACTTCTGTGTCTCTAGTAATGCACTTGATTGATAAAGAATTGGTGTGATCTCAGATTAAGAAATTCAAGGATGCCCTAGCCAAGCACAACACGGAACGATGCAGCCTTGGCCCAACACAAGGGTTGGAGGAGAAAGATCTTGTGGCACTTGCTGCAAACAGAGAACTCTCATTCAACTACACGCCTAAACCAGCAGAAGAGGTTCCCATGCCCATCCCTGCCACCGTGGGAGGGCTAGGAATATCAGAATTGGATAAATCACGTTCGGACTCGGAGCAACCGCCTCTTCCTCTACCTTCAACTTTCCTAAAGAGTGGCCATGTCTCCAAGGAGAATGCCTATGTGGGATGAAGCTGATACCCGTATCGAAACCGTACTACAAGAGCTTTTTGTAAAGGTTCGGGGTATATTAACGAAACCTGGTGAAGTTGGTTCTTTTTTTTTCTCCTTTTGTTTACATTTTCAGTGGCTTGGATCCCAGCCTGCTGATTCTTTAGAATATCAGCAGCTAGCTGTGTGATTGGTTGTATGTAGTCACTTGTTGTTGTTGTTGTTGTTGTACATGGCTGTATAAAAGCTTCTCTGCAAGATTCTGAGTTTAAAGTTTTCTGAAAGACTGTAATTAGTAAATTGGTAGCAGTCCAATGAAGAATCTTGTTGTAATGAAGTTTAAGATTTCCAGTTGGATCAACTATGCCTTGCATTGTTATCTCTTATTCTCATACAATCATGTGACTGTAAAGATATGCGGGAGCTCTAAGATCACAGGGAAATGCCTGCAAGTTCAATCCATTCTAGGCTCGTTGTGAGGTTTTATGGCAG CACCACGTGTCTGCAGTTTCCCGTTATATCCACAGAACCCGAAAGCAATGGGACGTTGCGTTATCCATTGACAACCCTAAATCTTCGATGTTGTTTCTTGACCGCTCCATTTTCCGTTCATTTTCCTTCGCCTAGAAACTTCTCTCTTCCCCTTTTCCTCCTCCTCCTCCTCCTCCTCCACTTCATCACAACCTCCCCATTTCCATCCCCGATTATCTCGTTCTTAATGATCTTATCACCTACCATATATCCATTTAAATTTCCCCCAATTTCCCACCTCCTAATCCTCCTACTTTCTTCAATCGCTGCGATTTCAATACATTCATCCTTGATTTCAATGGCGGACGCTGTCAGCAACATTTCTTTTGCCCCCTCTTTGCGTTCTTCTAATCATCTTCCTCCACCAATTTCCGCCCTTAAATCCCTCAATTCTTCTTCCTATCCCTTGAATTGGCAACGCCTTTCTGTCAAATTACCCTCCACCTTGCGGCCGTTTTCGATCAGCGACTCCAATAGCCAAATAATAGAGTTTACAGAAGCTAGGGACATCTCCAGGAACTCTGTTTCTCCTACACGATCTTCGACGAGTGGGTTTCGGGTTCCAAAAGCTCAGAAATGGTGGGATAAAGGGTTGCAGCCTAACATGAAAGATGTGACTGGTGCACAAGATTTTGTGGATTCTCTTTTAAGTGCAGGGGATAAGCTTGTTATTGTTATTTTCTTCTCCCCTGGTTGTGGTGGCTGCAAAGCTCTTCACCCCAAGATGTGCCAATTTGCTGAAATGTATCCTGATATCCAATTTTTGCAAGTGAACTATGAAGAACATAAATCCATGTGTTATAGCCTTGGTGTTCATGTGCTGCCCTTCTTTCGCTTCTACAGAGGTGCGCAGGGCCGCCTTTGTAGTTTTAGCTGCACTAATGCAACGATTAAGAAATTCAAGGATGCCCTAGCCAAGCACAACACGGAACGATGCAGCCTTGGCCCAACACAAGGGTTGGAGGAGAAAGATCTTGTGGCACTTGCTGCAAACAGAGAACTCTCATTCAACTACACGCCTAAACCAGCAGAAGAGGTTCCCATGCCCATCCCTGCCACCGTGGGAGGGCTAGGAATATCAGAATTGGATAAATCACGTTCGGACTCGGAGCAACCGCCTCTTCCTCTACCTTCAACTTTCCTAAAGAGTGGCCATGTCTCCAAGGAGAATGCCTATGTGGGATGAAGCTGATACCCGTATCGAAACCGTACTACAAGAGCTTTTTGTAAAGGTTCGGGGTATATTAACGAAACCTGGTGAAGTTGGTTCTTTTTTTTTCTCCTTTTGTTTACATTTTCAGTGGCTTGGATCCCAGCCTGCTGATTCTTTAGAATATCAGCAGCTAGCTGTGTGATTGGTTGTATGTAGTCACTTGTTGTTGTTGTTGTTGTTGTACATGGCTGTATAAAAGCTTCTCTGCAAGATTCTGAGTTTAAAGTTTTCTGAAAGACTGTAATTAGTAAATTGGTAGCAGTCCAATGAAGAATCTTGTTGTAATGAAGTTTAAGATTTCCAGTTGGATCAACTATGCCTTGCATTGTTATCTCTTATTCTCATACAATCATGTGACTGTAAAGATATGCGGGAGCTCTAAGATCACAGGGAAATGCCTGCAAGTTCAATCCATTCTAGGCTCGTTGTGAGGTTTTATGGCAG ATGATCTTATCACCTACCATATATCCATTTAAATTTCCCCCAATTTCCCACCTCCTAATCCTCCTACTTTCTTCAATCGCTGCGATTTCAATACATTCATCCTTGATTTCAATGGCGGACGCTGTCAGCAACATTTCTTTTGCCCCCTCTTTGCGTTCTTCTAATCATCTTCCTCCACCAATTTCCGCCCTTAAATCCCTCAATTCTTCTTCCTATCCCTTGAATTGGCAACGCCTTTCTGTCAAATTACCCTCCACCTTGCGGCCGTTTTCGATCAGCGACTCCAATAGCCAAATAATAGAGTTTACAGAAGCTAGGGACATCTCCAGGAACTCTGTTTCTCCTACACGATCTTCGACGAGTGGGTTTCGGGTTCCAAAAGCTCAGAAATGGTGGGATAAAGGGTTGCAGCCTAACATGAAAGATGTGACTGGTGCACAAGATTTTGTGGATTCTCTTTTAAGTGCAGGGGATAAGCTTGTTATTGTTATTTTCTTCTCCCCTGGTTGTGGTGGCTGCAAAGCTCTTCACCCCAAGATGTGCCAATTTGCTGAAATGTATCCTGATATCCAATTTTTGCAAGTGAACTATGAAGAACATAAATCCATGTGTTATAGCCTTGGTGTTCATGTGCTGCCCTTCTTTCGCTTCTACAGAGGTGCGCAGGGCCGCCTTTGTAGTTTTAGCTGCACTAATGCAACGATTAAGAAATTCAAGGATGCCCTAGCCAAGCACAACACGGAACGATGCAGCCTTGGCCCAACACAAGGGTTGGAGGAGAAAGATCTTGTGGCACTTGCTGCAAACAGAGAACTCTCATTCAACTACACGCCTAAACCAGCAGAAGAGGTTCCCATGCCCATCCCTGCCACCGTGGGAGGGCTAGGAATATCAGAATTGGATAAATCACGTTCGGACTCGGAGCAACCGCCTCTTCCTCTACCTTCAACTTTCCTAAAGAGTGGCCATGTCTCCAAGGAGAATGCCTATGTGGGATGA MILSPTIYPFKFPPISHLLILLLSSIAAISIHSSLISMADAVSNISFAPSLRSSNHLPPPISALKSLNSSSYPLNWQRLSVKLPSTLRPFSISDSNSQIIEFTEARDISRNSVSPTRSSTSGFRVPKAQKWWDKGLQPNMKDVTGAQDFVDSLLSAGDKLVIVIFFSPGCGGCKALHPKMCQFAEMYPDIQFLQVNYEEHKSMCYSLGVHVLPFFRFYRGAQGRLCSFSCTNATIKKFKDALAKHNTERCSLGPTQGLEEKDLVALAANRELSFNYTPKPAEEVPMPIPATVGGLGISELDKSRSDSEQPPLPLPSTFLKSGHVSKENAYVG Homology
BLAST of Cp4.1LG03g09270 vs. ExPASy Swiss-Prot
Match: O64654 (Thioredoxin-like 1-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g08570 PE=2 SV=1) HSP 1 Score: 288.1 bits (736), Expect = 1.3e-76 Identity = 142/218 (65.14%), Postives = 171/218 (78.44%), Query Frame = 0
BLAST of Cp4.1LG03g09270 vs. ExPASy Swiss-Prot
Match: Q10M18 (Thioredoxin-like 1-2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0326500 PE=2 SV=1) HSP 1 Score: 280.8 bits (717), Expect = 2.0e-74 Identity = 138/210 (65.71%), Postives = 160/210 (76.19%), Query Frame = 0
BLAST of Cp4.1LG03g09270 vs. ExPASy Swiss-Prot
Match: Q6Z4N3 (Thioredoxin-like 1-1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0684100 PE=2 SV=1) HSP 1 Score: 253.8 bits (647), Expect = 2.6e-66 Identity = 122/197 (61.93%), Postives = 145/197 (73.60%), Query Frame = 0
BLAST of Cp4.1LG03g09270 vs. ExPASy Swiss-Prot
Match: O22779 (Thioredoxin-like 1-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g33270 PE=2 SV=1) HSP 1 Score: 244.2 bits (622), Expect = 2.1e-63 Identity = 106/154 (68.83%), Postives = 132/154 (85.71%), Query Frame = 0
BLAST of Cp4.1LG03g09270 vs. ExPASy Swiss-Prot
Match: Q9XFI1 (Thioredoxin-like 1-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g61440 PE=2 SV=1) HSP 1 Score: 214.2 bits (544), Expect = 2.3e-54 Identity = 95/167 (56.89%), Postives = 126/167 (75.45%), Query Frame = 0
BLAST of Cp4.1LG03g09270 vs. NCBI nr
Match: XP_023529031.1 (thioredoxin-like 1-1, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 661 bits (1705), Expect = 2.14e-239 Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 0
BLAST of Cp4.1LG03g09270 vs. NCBI nr
Match: KAG6581693.1 (Thioredoxin-like 1-1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 599 bits (1544), Expect = 1.87e-215 Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0
BLAST of Cp4.1LG03g09270 vs. NCBI nr
Match: KAG7018175.1 (Thioredoxin-like 1-1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 596 bits (1536), Expect = 3.10e-214 Identity = 293/295 (99.32%), Postives = 295/295 (100.00%), Query Frame = 0
BLAST of Cp4.1LG03g09270 vs. NCBI nr
Match: XP_022933131.1 (thioredoxin-like 1-1, chloroplastic [Cucurbita moschata]) HSP 1 Score: 594 bits (1531), Expect = 1.79e-213 Identity = 294/295 (99.66%), Postives = 294/295 (99.66%), Query Frame = 0
BLAST of Cp4.1LG03g09270 vs. NCBI nr
Match: XP_022972809.1 (thioredoxin-like 1-1, chloroplastic [Cucurbita maxima]) HSP 1 Score: 585 bits (1508), Expect = 5.74e-210 Identity = 289/295 (97.97%), Postives = 291/295 (98.64%), Query Frame = 0
BLAST of Cp4.1LG03g09270 vs. ExPASy TrEMBL
Match: A0A6J1EYA1 (thioredoxin-like 1-1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111439903 PE=4 SV=1) HSP 1 Score: 594 bits (1531), Expect = 8.68e-214 Identity = 294/295 (99.66%), Postives = 294/295 (99.66%), Query Frame = 0
BLAST of Cp4.1LG03g09270 vs. ExPASy TrEMBL
Match: A0A6J1ICM9 (thioredoxin-like 1-1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111471322 PE=4 SV=1) HSP 1 Score: 585 bits (1508), Expect = 2.78e-210 Identity = 289/295 (97.97%), Postives = 291/295 (98.64%), Query Frame = 0
BLAST of Cp4.1LG03g09270 vs. ExPASy TrEMBL
Match: A0A0A0LD91 (Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G844860 PE=4 SV=1) HSP 1 Score: 445 bits (1144), Expect = 1.21e-154 Identity = 235/313 (75.08%), Postives = 256/313 (81.79%), Query Frame = 0
BLAST of Cp4.1LG03g09270 vs. ExPASy TrEMBL
Match: A0A6J1DP71 (thioredoxin-like 1-1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111022913 PE=4 SV=1) HSP 1 Score: 420 bits (1079), Expect = 9.94e-145 Identity = 220/311 (70.74%), Postives = 251/311 (80.71%), Query Frame = 0
BLAST of Cp4.1LG03g09270 vs. ExPASy TrEMBL
Match: A0A6J1I9C0 (thioredoxin-like 1-1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111470833 PE=4 SV=1) HSP 1 Score: 418 bits (1075), Expect = 2.64e-144 Identity = 220/305 (72.13%), Postives = 246/305 (80.66%), Query Frame = 0
BLAST of Cp4.1LG03g09270 vs. TAIR 10
Match: AT1G08570.2 (atypical CYS HIS rich thioredoxin 4 ) HSP 1 Score: 288.9 bits (738), Expect = 5.2e-78 Identity = 143/226 (63.27%), Postives = 174/226 (76.99%), Query Frame = 0
BLAST of Cp4.1LG03g09270 vs. TAIR 10
Match: AT1G08570.1 (atypical CYS HIS rich thioredoxin 4 ) HSP 1 Score: 288.1 bits (736), Expect = 8.9e-78 Identity = 142/218 (65.14%), Postives = 171/218 (78.44%), Query Frame = 0
BLAST of Cp4.1LG03g09270 vs. TAIR 10
Match: AT1G08570.3 (atypical CYS HIS rich thioredoxin 4 ) HSP 1 Score: 261.9 bits (668), Expect = 6.9e-70 Identity = 126/178 (70.79%), Postives = 147/178 (82.58%), Query Frame = 0
BLAST of Cp4.1LG03g09270 vs. TAIR 10
Match: AT1G08570.4 (atypical CYS HIS rich thioredoxin 4 ) HSP 1 Score: 261.9 bits (668), Expect = 6.9e-70 Identity = 126/178 (70.79%), Postives = 147/178 (82.58%), Query Frame = 0
BLAST of Cp4.1LG03g09270 vs. TAIR 10
Match: AT2G33270.1 (atypical CYS HIS rich thioredoxin 3 ) HSP 1 Score: 244.2 bits (622), Expect = 1.5e-64 Identity = 106/154 (68.83%), Postives = 132/154 (85.71%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|