Cp4.1LG03g08670 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG03g08670
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionPentatricopeptide repeat-containing protein
LocationCp4.1LG03: 2639538 .. 2642929 (-)
RNA-Seq ExpressionCp4.1LG03g08670
SyntenyCp4.1LG03g08670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAATGGGGAAAAATGGAAAGAGAACAAAAATGGAAAGCATGATTGTCTTCTTCTCCGTCTTTCACGAGCCACGGCGTATGCAGCCGCCCCGTTGTTTCTTCAATCTTCTTCTCCGGGGAGCCTTAGGCGGCGGGGATACGCAATAAGTGGATACAAATGTCTTTATTGTATCAGGTACCGATTAGGGAAATTTATGCTAAAGAGACAACCAGAGTTTTTCTTTCTTGCNGGAAATTTATGCTAAAGATACAACCAGAGTTTTTCTTTCTTGCTTTGCTAGATATGTGCGTGTCTTGTGCAATTCGCACAACTCCAGGTTATCGTCGCCGTTTTCTACCTATCAGGTTGTGCCGAAAATCTCATCAACAGATAGAGACTATAGTGCCAATTCGAATGTTGCACGCACGAACTGGCTGATCACAAAGCTTGGTAAAGAAGGAAAAATCGGAGAGGCACGTAGGGTGTTCGAGGAAATGCCCGATCGAGATGTGGTCTCATGGACTGCAGTAATTACAGGGTATATCAAATGTGGAATGATTGAGGAAGCTAAGAAGCTATTTGATAGAGATGACGCTATAAAGAATGTTGTTACTTGGACAGCATTGGTTAGTGGATATGTAAGATTGAGCCGGATTGAGGAGGCTAGAAGCTTGTTTGATGCCATGCCAGTTAAGAATGTTGTTTCGTGGAACACTATGATTGAAGGGTATGCGCGAAAGGGTTGGGTCGATCAGGCTTTTGATTTGTTTAAAAGAATGCCCGAGAGGAATGTGGTTTCTTGGAACACTGTTATTACAGCATTGATGAAAAGGAGGAGAGTAGATGAAGCTCAGGAGCTTTTTAACCAGATGCCGGAGAGAGATGTGATTTCTTGGACGGCCATGGTGGCTGGTTTGGCAAAAAATGGGAGAATTGATGATGCCCGTTTAGTGTTCGATAAAATGCCTGAGCGAAATGTGGTTTCCTGGAATGCAATAATTACTGGGTATGCTCAGAATATGCGGCTGGATGAGGCCTTTGAACTGTTTGAGAAAATTCCAGAGAGGGATGTGCCTTCATGGAACGCCATGATTACAGGGTTCATTCAAAACGGTAAGCTTGAAAGGGCAGTGGATTTGTTCTATAAAATGCCTAACAAAAATGTTGTTTCTTGGACAGCAATGATTTCTGGACATGTACAAGATGGGCAAAGTGAAGAAGCATTGAAGATTTTTTCAGAAATGCAAGCAGCCAACAATGTAAAACCAAATGAAGGTACTTTTGTCAGCGTGTTGGGTGCTTGTAGTAACTTAGCCGGTCTTTGCGAGGGACAACAAATTCACCAGATAATAAGTAAGTCAGTATACCAAGAAGTTACAGATGTAGTATCAGCTTTAATAAGCATGTATTCAAAATGTGGGGAGTTGGATATGGCTCGCAAGATATTCGATGATGGATCGACAAGCCACAGAGATGTAGTTTCTTGGAATGGGATGATTGCAGCCTATGCTCATCATGGCCATGGCTACAAAGCAATTCGTTTATTTGATGAAATGCAGGCATTGGGATTTCGTCCAGATAATGTCACCTATATCGCGTTGCTTTCTGCTTGTAGTCATGCTGGCCTTGTGGATGAGGGGTTGAAATACTTCGAAAATCTCGTAAGAGATGGGTCTATAACGCTAAGAGAAGATCATTTCACATGCTTGGTCGATCTTTTTGGCCGAGCGGGACGACTCCAAGAGGCATTTGATTTCATCAAGGGGCTTGAGGATAAGCCTTCATCGTCTGTTTGGGCAGCTCTTCTTGCTGGATGTAATGTTCATGGCAATATAGATTTGGGCAAGTTAACGGCTGAAAAGCTTTTGGAAACAGAACCAGAGAATGCAGGAACCTTTATGCTGCTATCTAACATATATGCTTCAACTGGAAAATGGAGAGAAGCTGCCAAAGTAAGGTTGAAAATGAAGGATAAGGGATTGAAGAAGCAACCTGGTTGCAGTTGGATAGAAGTTGGTAATGCAGTGCACGTGTTCGTAGTGGGCGACAATTCTCATTGCCAATCTGAAAATATTTATCCTTTACTTCATGATCTGCATATGAAAATGAAGAAGATTGGTCATACATTATATGAAGATTTAACAGTGGATTTGAATCTTGTGATTCCATGAGCCTGTAATTGGTGTCAAATTTGCTTGGCCAACCATATGTTCTTCAACGCTGCTACACCCAGAGGTTGGTTCAATTCCTATGTTCATCTCCATATCTCTTCCCTGCCATATTCACAGGCAAATGGCAAGCAGGGAAGCGAGCGGCTTGTACTGATGAGATTGCCTCCACCGTCAACAACTAAGCTAAATCTTGTGCCCTTTGCTACAGGTCTGTCTTCTTTGAGTCTATGAACTATGTTATTTAAAGAAAGGGATACAGTGGGAAGCAAATGTGAGATCCCACGTGAGTTGGAGAGAAGAACGAATCATTCTTTATAAGGGTGTGGAAATCTCTCCTTAGCATATGCGTTTTAAAAACCTTGAAGGAAAGCCTAGAAAGAAAAGCCGAAAGAGGACAATATTTGCTAGCGGTAGATTTTTCTATCCATTTCAATAACCGTACTTTTGTGCTTTGGCAACTTGAACAGTCCATCCATTTTTAAGTTCTTTGTTTTCGTACTTTTTAACTTATGGACATGGTAAAGTAGCAATCAAAGTAGTTGTTTAAAGAAGATACTTTTGTGCTTTAAAGATTGGTAGTGCTCTCCATGTGATTTTTCCTTTTAATTATCGTTGGTAGGGAATACCACATCGACTAATTAAGGAATTGATAATGAGTTTATAAGTAAGAAATTCATCTCAGTTTATGCTCAAAGTGGACAACATCATACCGACCCATATTTTTCTTATTTTTCAGTTGGATTGATGTTAATTATATCAACACTTTCAACCCAAACTAAATCAGAAGGTGGGGGATAAGTAAGGAATAATATATCGAAATATATGGGCAAAAATTTAACATTTATAGAACAATTACTATAAATTTTATTTTTTCTTTAAAAAAAAAAAAAATCCCCGTAAAATAAGATAACCTGAAAAAGGAAATTGTGGTGAAATCGGCTTTAGCTACACGCTACGGGTAACATTTCTTCAACCATAAAGTTTGCAGCTTTATCTTTTACTCAGCCCAATAGCCTCTGCCTCTGTTCTCTAATGGCTTCCTCTAAATCTAGTCCAATTCCTTCAATGGATATGCTCTGAAACTCCCAGTCCACGCCTCTACCTCGAACAACACACCGGAAAGGCCATGGCAATGACATGGCACATGGCGTTTTGGATCGCTAACATGGTTTGGGTGGCCTTGAGCGACTGTGTTTCTTCTTGTTTGGCCATCGCCGACGAGGTCGCGGGCTCCATCAGA

mRNA sequence

AAAAATGGGGAAAAATGGAAAGAGAACAAAAATGGAAAGCATGATTGTCTTCTTCTCCGTCTTTCACGAGCCACGGCGTATGCAGCCGCCCCGTTGTTTCTTCAATCTTCTTCTCCGGGGAGCCTTAGGCGGCGGGGATACGCAATAAGTGGATACAAATGTCTTTATTGTATCAGATATGTGCGTGTCTTGTGCAATTCGCACAACTCCAGGTTATCGTCGCCGTTTTCTACCTATCAGGTTGTGCCGAAAATCTCATCAACAGATAGAGACTATAGTGCCAATTCGAATGTTGCACGCACGAACTGGCTGATCACAAAGCTTGCATTGATGAAAAGGAGGAGAGTAGATGAAGCTCAGGAGCTTTTTAACCAGATGCCGGAGAGAGATGTGATTTCTTGGACGGCCATGGTGGCTGGTTTGGCAAAAAATGGGAGAATTGATGATGCCCGTTTAGTGTTCGATAAAATGCCTGAGCGAAATGTGGTTTCCTGGAATGCAATAATTACTGGGTATGCTCAGAATATGCGGCTGGATGAGGCCTTTGAACTGTTTGAGAAAATTCCAGAGAGGGATGTGCCTTCATGGAACGCCATGATTACAGGGTTCATTCAAAACGGTAAGCTTGAAAGGGCAGTGGATTTGTTCTATAAAATGCCTAACAAAAATGTTGTTTCTTGGACAGCAATGATTTCTGGACATGTACAAGATGGGCAAAGTGAAGAAGCATTGAAGATTTTTTCAGAAATGCAAGCAGCCAACAATGTAAAACCAAATGAAGGTACTTTTGTCAGCGTGTTGGGTGCTTGTAGTAACTTAGCCGTCCAATTCCTTCAATGGATATGCTCTGAAACTCCCAGTCCACGCCTCTACCTCGAACAACACACCGGAAAGGCCATGGCAATGACATGGCACATGGCGTTTTGGATCGCTAACATGGTTTGGGTGGCCTTGAGCGACTGTGTTTCTTCTTGTTTGGCCATCGCCGACGAGGTCGCGGGCTCCATCAGA

Coding sequence (CDS)

AAAAATGGGGAAAAATGGAAAGAGAACAAAAATGGAAAGCATGATTGTCTTCTTCTCCGTCTTTCACGAGCCACGGCGTATGCAGCCGCCCCGTTGTTTCTTCAATCTTCTTCTCCGGGGAGCCTTAGGCGGCGGGGATACGCAATAAGTGGATACAAATGTCTTTATTGTATCAGATATGTGCGTGTCTTGTGCAATTCGCACAACTCCAGGTTATCGTCGCCGTTTTCTACCTATCAGGTTGTGCCGAAAATCTCATCAACAGATAGAGACTATAGTGCCAATTCGAATGTTGCACGCACGAACTGGCTGATCACAAAGCTTGCATTGATGAAAAGGAGGAGAGTAGATGAAGCTCAGGAGCTTTTTAACCAGATGCCGGAGAGAGATGTGATTTCTTGGACGGCCATGGTGGCTGGTTTGGCAAAAAATGGGAGAATTGATGATGCCCGTTTAGTGTTCGATAAAATGCCTGAGCGAAATGTGGTTTCCTGGAATGCAATAATTACTGGGTATGCTCAGAATATGCGGCTGGATGAGGCCTTTGAACTGTTTGAGAAAATTCCAGAGAGGGATGTGCCTTCATGGAACGCCATGATTACAGGGTTCATTCAAAACGGTAAGCTTGAAAGGGCAGTGGATTTGTTCTATAAAATGCCTAACAAAAATGTTGTTTCTTGGACAGCAATGATTTCTGGACATGTACAAGATGGGCAAAGTGAAGAAGCATTGAAGATTTTTTCAGAAATGCAAGCAGCCAACAATGTAAAACCAAATGAAGGTACTTTTGTCAGCGTGTTGGGTGCTTGTAGTAACTTAGCCGTCCAATTCCTTCAATGGATATGCTCTGAAACTCCCAGTCCACGCCTCTACCTCGAACAACACACCGGAAAGGCCATGGCAATGACATGGCACATGGCGTTTTGGATCGCTAACATGGTTTGGGTGGCCTTGAGCGACTGTGTTTCTTCTTGTTTGGCCATCGCCGACGAGGTCGCGGGCTCCATCAGA

Protein sequence

KNGEKWKENKNGKHDCLLLRLSRATAYAAAPLFLQSSSPGSLRRRGYAISGYKCLYCIRYVRVLCNSHNSRLSSPFSTYQVVPKISSTDRDYSANSNVARTNWLITKLALMKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIITGYAQNMRLDEAFELFEKIPERDVPSWNAMITGFIQNGKLERAVDLFYKMPNKNVVSWTAMISGHVQDGQSEEALKIFSEMQAANNVKPNEGTFVSVLGACSNLAVQFLQWICSETPSPRLYLEQHTGKAMAMTWHMAFWIANMVWVALSDCVSSCLAIADEVAGSIR
Homology
BLAST of Cp4.1LG03g08670 vs. ExPASy Swiss-Prot
Match: O64766 (Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E15 PE=2 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.4e-59
Identity = 104/173 (60.12%), Postives = 139/173 (80.35%), Query Frame = 0

Query: 102 NWLITKLALMKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERN 161
           +W     AL++R R+DEA  LF +MP RDV+SWTAMV GLAKNG++D+AR +FD MPERN
Sbjct: 173 SWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERN 232

Query: 162 VVSWNAIITGYAQNMRLDEAFELFEKIPERDVPSWNAMITGFIQNGKLERAVDLFYKMPN 221
           ++SWNA+ITGYAQN R+DEA +LF+ +PERD  SWN MITGFI+N ++ +A  LF +MP 
Sbjct: 233 IISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMPE 292

Query: 222 KNVVSWTAMISGHVQDGQSEEALKIFSEMQAANNVKPNEGTFVSVLGACSNLA 275
           KNV+SWT MI+G+V++ ++EEAL +FS+M    +VKPN GT+VS+L ACS+LA
Sbjct: 293 KNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLA 345

BLAST of Cp4.1LG03g08670 vs. ExPASy Swiss-Prot
Match: Q9SY02 (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 8.6e-41
Identity = 81/177 (45.76%), Postives = 122/177 (68.93%), Query Frame = 0

Query: 97  NVARTNWLITKLALMKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDK 156
           +V   N +IT  A  +  ++DEA++LF++ P +DV +WTAMV+G  +N  +++AR +FDK
Sbjct: 249 DVVSWNTIITGYA--QSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDK 308

Query: 157 MPERNVVSWNAIITGYAQNMRLDEAFELFEKIPERDVPSWNAMITGFIQNGKLERAVDLF 216
           MPERN VSWNA++ GY Q  R++ A ELF+ +P R+V +WN MITG+ Q GK+  A +LF
Sbjct: 309 MPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLF 368

Query: 217 YKMPNKNVVSWTAMISGHVQDGQSEEALKIFSEMQAANNVKPNEGTFVSVLGACSNL 274
            KMP ++ VSW AMI+G+ Q G S EAL++F +M+     + N  +F S L  C+++
Sbjct: 369 DKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGG-RLNRSSFSSALSTCADV 422

BLAST of Cp4.1LG03g08670 vs. ExPASy Swiss-Prot
Match: P0C7R0 (Pentatricopeptide repeat-containing protein At1g32415, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E56 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 8.1e-39
Identity = 78/177 (44.07%), Postives = 115/177 (64.97%), Query Frame = 0

Query: 102 NWLITKLALMKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERN 161
           +W +   AL    R ++A ELF++MPER+V+SW  +V GL +NG ++ A+ VFD MP R+
Sbjct: 140 SWTVMLTALCDDGRSEDAVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRD 199

Query: 162 VVSWNAIITGYAQNMRLDEAFELFEKIPERDVPSWNAMITGFIQNGKLERAVDLFYKMPN 221
           VVSWNA+I GY +N  ++EA  LF  + E++V +W +M+ G+ + G +  A  LF +MP 
Sbjct: 200 VVSWNAMIKGYIENDGMEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPE 259

Query: 222 KNVVSWTAMISGHVQDGQSEEALKIFSEMQA-ANNVKPNEGTFVSVLGACSNLAVQF 278
           +N+VSWTAMISG   +    EAL +F EM+   + V PN  T +S+  AC  L V+F
Sbjct: 260 RNIVSWTAMISGFAWNELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVEF 316

BLAST of Cp4.1LG03g08670 vs. ExPASy Swiss-Prot
Match: Q56XI1 (Pentatricopeptide repeat-containing protein At1g09410, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H18 PE=1 SV=2)

HSP 1 Score: 151.0 bits (380), Expect = 2.4e-35
Identity = 68/167 (40.72%), Postives = 110/167 (65.87%), Query Frame = 0

Query: 90  RDYSANSNVARTNWLITKLALMKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDD 149
           R YS        N  IT L+  +  ++ EA++LF+    + + SW +MVAG   N    D
Sbjct: 9   RTYSTTIPPPTANVRITHLS--RIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRD 68

Query: 150 ARLVFDKMPERNVVSWNAIITGYAQNMRLDEAFELFEKIPERDVPSWNAMITGFIQNGKL 209
           AR +FD+MP+RN++SWN +++GY +N  +DEA ++F+ +PER+V SW A++ G++ NGK+
Sbjct: 69  ARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKV 128

Query: 210 ERAVDLFYKMPNKNVVSWTAMISGHVQDGQSEEALKIFSEMQAANNV 257
           + A  LF+KMP KN VSWT M+ G +QDG+ ++A K++  +   +N+
Sbjct: 129 DVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNI 173

BLAST of Cp4.1LG03g08670 vs. ExPASy Swiss-Prot
Match: Q9FHR3 (Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E37 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.2e-35
Identity = 97/294 (32.99%), Postives = 163/294 (55.44%), Query Frame = 0

Query: 22  SRATAYAAAPLFLQSSSPGSLRRRGYAISGY--KCLYCIRYVRVLCNSHNSRLSSPFS-T 81
           S + +Y+++ +F +  SPG+     + I GY  K L+    V +L     + L+ P   T
Sbjct: 56  SSSLSYSSS-VFERVPSPGTY-LWNHLIKGYSNKFLF-FETVSILMRMMRTGLARPDEYT 115

Query: 82  YQVVPKISSTDRDYSANSNVARTNWLITKLALMKR--------------RRVDEAQELFN 141
           + +V K+ S +      S+V   + L+ ++   K               + +  A+++F 
Sbjct: 116 FPLVMKVCSNNGQVRVGSSV---HGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFG 175

Query: 142 QMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIITGYAQNMRLDEAFEL 201
           +MPER+ +SWTA+V    K+G +++A+ +FD MPERN+ SWNA++ G  ++  L  A +L
Sbjct: 176 EMPERNAVSWTALVVAYVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKL 235

Query: 202 FEKIPERDVPSWNAMITGFIQNGKLERAVDLFYKMPNKNVVSWTAMISGHVQDGQSEEAL 261
           F+++P+RD+ S+ +MI G+ + G +  A DLF +    +V +W+A+I G+ Q+GQ  EA 
Sbjct: 236 FDEMPKRDIISYTSMIDGYAKGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAF 295

Query: 262 KIFSEMQAANNVKPNEGTFVSVLGACSNLAVQFLQWICSETPSPRLYLEQHTGK 299
           K+FSEM  A NVKP+E   V ++ ACS +    L   C +  S   YL Q   K
Sbjct: 296 KVFSEM-CAKNVKPDEFIMVGLMSACSQMGCFEL---CEKVDS---YLHQRMNK 336

BLAST of Cp4.1LG03g08670 vs. NCBI nr
Match: KAG7017650.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 387 bits (995), Expect = 6.98e-127
Identity = 222/355 (62.54%), Postives = 223/355 (62.82%), Query Frame = 0

Query: 44  RRGYAISGYKCLYCI-RYVRVLCNSHNSRLSSPFSTYQVVPKISSTDRDYSANSNVARTN 103
           R  YA    + LYC  RYVRVLCNSHNSRLSSPFSTYQVVPKISSTDRDYSANSNVARTN
Sbjct: 10  REIYAKETTRVLYCFARYVRVLCNSHNSRLSSPFSTYQVVPKISSTDRDYSANSNVARTN 69

Query: 104 WLITKL------------------------------------------------------ 163
           WLITKL                                                      
Sbjct: 70  WLITKLGKEGKIGEARRVFEEMPDRDVVSWTAVITGYIKCGMIEEAKKLFDRDDAIKNVV 129

Query: 164 ------------------------------------------------------------ 223
                                                                       
Sbjct: 130 TWTALVSGYVRLSRIEEARSLFDAMPVKNVVSWNTMIEGYARKGWVDQAFDLFKRMPERN 189

Query: 224 ---------ALMKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPE 274
                    ALMKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPE
Sbjct: 190 VVSWNTVITALMKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPE 249

BLAST of Cp4.1LG03g08670 vs. NCBI nr
Match: KAG6580894.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 385 bits (989), Expect = 5.73e-126
Identity = 219/344 (63.66%), Postives = 219/344 (63.66%), Query Frame = 0

Query: 55  LYCI-RYVRVLCNSHNSRLSSPFSTYQVVPKISSTDRDYSANSNVARTNWLITKL----- 114
           LYC  RYVRVLCNSHNSRLSSPFSTYQVVPKISSTDRDYSANSNVARTNWLITKL     
Sbjct: 22  LYCFARYVRVLCNSHNSRLSSPFSTYQVVPKISSTDRDYSANSNVARTNWLITKLGKEGK 81

Query: 115 ------------------------------------------------------------ 174
                                                                       
Sbjct: 82  IGEARRVFEEMPDRDVVSWTAVITGYIKCGMIEEAKKLFDRDDAIKNVVTWTALVSGYVR 141

Query: 175 ----------------------------------------------------------AL 234
                                                                     AL
Sbjct: 142 LSRIEEARSLFDAMPVKNVVSWNTMIEGYARKGWVDQAFDLFKRMPERNVVSWNTVITAL 201

Query: 235 MKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIIT 274
           MKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIIT
Sbjct: 202 MKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIIT 261

BLAST of Cp4.1LG03g08670 vs. NCBI nr
Match: XP_023527853.1 (pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 382 bits (981), Expect = 9.13e-125
Identity = 216/339 (63.72%), Postives = 216/339 (63.72%), Query Frame = 0

Query: 59  RYVRVLCNSHNSRLSSPFSTYQVVPKISSTDRDYSANSNVARTNWLITKL---------- 118
           RYVRVLCNSHNSRLSSPFSTYQVVPKISSTDRDYSANSNVARTNWLITKL          
Sbjct: 27  RYVRVLCNSHNSRLSSPFSTYQVVPKISSTDRDYSANSNVARTNWLITKLGKEGKIGEAR 86

Query: 119 ------------------------------------------------------------ 178
                                                                       
Sbjct: 87  RVFEEMPDRDVVSWTAVITGYIKCGMIEEAKKLFDRDDAIKNVVTWTALVSGYVRLSRIE 146

Query: 179 -----------------------------------------------------ALMKRRR 238
                                                                ALMKRRR
Sbjct: 147 EARSLFDAMPVKNVVSWNTMIEGYARKGWVDQAFDLFKRMPERNVVSWNTVITALMKRRR 206

Query: 239 VDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIITGYAQN 274
           VDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIITGYAQN
Sbjct: 207 VDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIITGYAQN 266

BLAST of Cp4.1LG03g08670 vs. NCBI nr
Match: XP_022935077.1 (pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Cucurbita moschata])

HSP 1 Score: 379 bits (974), Expect = 1.03e-123
Identity = 214/339 (63.13%), Postives = 215/339 (63.42%), Query Frame = 0

Query: 59  RYVRVLCNSHNSRLSSPFSTYQVVPKISSTDRDYSANSNVARTNWLITKL---------- 118
           RYVR+LCNSHNSRLSSPFSTYQVVPKISSTDRDYSANSNVARTNWLITKL          
Sbjct: 27  RYVRILCNSHNSRLSSPFSTYQVVPKISSTDRDYSANSNVARTNWLITKLGKEGKIGEAR 86

Query: 119 ------------------------------------------------------------ 178
                                                                       
Sbjct: 87  RVFEEMPDRDVVSWTAVITGYIKCGMIEEAKKLFDRDDAIKNVVTWTALVSGYVRLSRIE 146

Query: 179 -----------------------------------------------------ALMKRRR 238
                                                                ALMKRRR
Sbjct: 147 EARSLFDAMPVKNVVSWNTMIEGYARKGWVDQAFDLFKRMPERNVVSWNTVITALMKRRR 206

Query: 239 VDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIITGYAQN 274
           VDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIITGYAQN
Sbjct: 207 VDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIITGYAQN 266

BLAST of Cp4.1LG03g08670 vs. NCBI nr
Match: XP_022983729.1 (pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Cucurbita maxima])

HSP 1 Score: 370 bits (949), Expect = 5.84e-120
Identity = 211/339 (62.24%), Postives = 213/339 (62.83%), Query Frame = 0

Query: 59  RYVRVLCNSHNSRLSSPFSTYQVVPKISSTDRDYSANSNVARTNWLITKL---------- 118
           RYVRVL NSHNSRLSS FSTYQVVPKISS DRDYSANSNVARTNWLITKL          
Sbjct: 27  RYVRVLSNSHNSRLSSLFSTYQVVPKISSKDRDYSANSNVARTNWLITKLGKEGKIGEAR 86

Query: 119 ------------------------------------------------------------ 178
                                                                       
Sbjct: 87  RVFEEMPDRDVVSWTAVITGYIKCGMIEEAKKLFDRDDAIKNVVTWTALVSGYVRLSRIE 146

Query: 179 -----------------------------------------------------ALMKRRR 238
                                                                ALM++RR
Sbjct: 147 EARSLFDAMPVKNVVSWNTMIEGYARKGWVDQAFDLFKRMPERNVVSWNTVITALMRKRR 206

Query: 239 VDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIITGYAQN 274
           VDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIITGYAQN
Sbjct: 207 VDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIITGYAQN 266

BLAST of Cp4.1LG03g08670 vs. ExPASy TrEMBL
Match: A0A6J1F4K7 (pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111442054 PE=4 SV=1)

HSP 1 Score: 379 bits (974), Expect = 4.98e-124
Identity = 214/339 (63.13%), Postives = 215/339 (63.42%), Query Frame = 0

Query: 59  RYVRVLCNSHNSRLSSPFSTYQVVPKISSTDRDYSANSNVARTNWLITKL---------- 118
           RYVR+LCNSHNSRLSSPFSTYQVVPKISSTDRDYSANSNVARTNWLITKL          
Sbjct: 27  RYVRILCNSHNSRLSSPFSTYQVVPKISSTDRDYSANSNVARTNWLITKLGKEGKIGEAR 86

Query: 119 ------------------------------------------------------------ 178
                                                                       
Sbjct: 87  RVFEEMPDRDVVSWTAVITGYIKCGMIEEAKKLFDRDDAIKNVVTWTALVSGYVRLSRIE 146

Query: 179 -----------------------------------------------------ALMKRRR 238
                                                                ALMKRRR
Sbjct: 147 EARSLFDAMPVKNVVSWNTMIEGYARKGWVDQAFDLFKRMPERNVVSWNTVITALMKRRR 206

Query: 239 VDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIITGYAQN 274
           VDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIITGYAQN
Sbjct: 207 VDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIITGYAQN 266

BLAST of Cp4.1LG03g08670 vs. ExPASy TrEMBL
Match: A0A6J1J8B4 (pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111482256 PE=4 SV=1)

HSP 1 Score: 370 bits (949), Expect = 2.83e-120
Identity = 211/339 (62.24%), Postives = 213/339 (62.83%), Query Frame = 0

Query: 59  RYVRVLCNSHNSRLSSPFSTYQVVPKISSTDRDYSANSNVARTNWLITKL---------- 118
           RYVRVL NSHNSRLSS FSTYQVVPKISS DRDYSANSNVARTNWLITKL          
Sbjct: 27  RYVRVLSNSHNSRLSSLFSTYQVVPKISSKDRDYSANSNVARTNWLITKLGKEGKIGEAR 86

Query: 119 ------------------------------------------------------------ 178
                                                                       
Sbjct: 87  RVFEEMPDRDVVSWTAVITGYIKCGMIEEAKKLFDRDDAIKNVVTWTALVSGYVRLSRIE 146

Query: 179 -----------------------------------------------------ALMKRRR 238
                                                                ALM++RR
Sbjct: 147 EARSLFDAMPVKNVVSWNTMIEGYARKGWVDQAFDLFKRMPERNVVSWNTVITALMRKRR 206

Query: 239 VDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIITGYAQN 274
           VDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIITGYAQN
Sbjct: 207 VDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIITGYAQN 266

BLAST of Cp4.1LG03g08670 vs. ExPASy TrEMBL
Match: A0A6J1DWF0 (pentatricopeptide repeat-containing protein At2g35030, mitochondrial isoform X1 OS=Momordica charantia OX=3673 GN=LOC111025012 PE=4 SV=1)

HSP 1 Score: 322 bits (825), Expect = 1.01e-101
Identity = 186/340 (54.71%), Postives = 199/340 (58.53%), Query Frame = 0

Query: 58  IRYVRVLCNSHNSRLSSPFSTYQVVPKISSTDRDYSANSNVARTNWLITKL--------- 117
           +RYV V+ +  NSR  S F TYQV  KISSTDRDYSANS VARTNWLITKL         
Sbjct: 25  VRYVAVMSSLRNSRFWSQFCTYQVERKISSTDRDYSANSTVARTNWLITKLGKEGRIGEA 84

Query: 118 ------------------------------------------------------------ 177
                                                                       
Sbjct: 85  RRVFEEMPDRDVVSWTAVITGYIKCGMIEEARKLFDRIDAKKNVVTWTALVSGYVRLSRI 144

Query: 178 ------------------------------------------------------ALMKRR 237
                                                                 ALM+ R
Sbjct: 145 KEARNLFDAMPVKNVISWNTMIEGYVRQGWVDQAFDLFERMPERNVVSWNTMITALMQCR 204

Query: 238 RVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIITGYAQ 274
           RVDEA ELF+QMPERDVISWTAMVAGL+KNGRID+ARLVFD+MP+RNVVSWNAIITGYAQ
Sbjct: 205 RVDEAWELFDQMPERDVISWTAMVAGLSKNGRIDEARLVFDRMPDRNVVSWNAIITGYAQ 264

BLAST of Cp4.1LG03g08670 vs. ExPASy TrEMBL
Match: A0A5A7UH59 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006890 PE=4 SV=1)

HSP 1 Score: 322 bits (824), Expect = 1.45e-101
Identity = 186/340 (54.71%), Postives = 201/340 (59.12%), Query Frame = 0

Query: 59  RYVRVLCNSHNSRLSSPFSTYQVVPKISSTDRDYSANSNVARTNWLITKL---------- 118
           RY  +LCN HNS LSS FST QVVPKISS  RD+SANSNVAR+NWLITKL          
Sbjct: 27  RYAFLLCNLHNSILSSQFSTCQVVPKISSPVRDFSANSNVARSNWLITKLGKEGKIREAR 86

Query: 119 ------------------------------------------------------------ 178
                                                                       
Sbjct: 87  KVFEEMLDRDVVSWTAVITGYIKCGMIEEAKTLFDRNDAIKNVVTWTALVSGYVKLNRIE 146

Query: 179 -----------------------------------------------------ALMKRRR 238
                                                                ALM+RRR
Sbjct: 147 EARRLFDAMPVKNVVSWNTMIEGYARKGWIDQALDLFEKMPERNVVSWNTVITALMQRRR 206

Query: 239 VDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIITGYAQN 275
           VDEAQ LFN+MPERDVISWT MVAGL+KNGRIDDARL+FDKMP RNVVSWNAII GYAQN
Sbjct: 207 VDEAQALFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNAIIIGYAQN 266

BLAST of Cp4.1LG03g08670 vs. ExPASy TrEMBL
Match: A0A1S3B8F2 (pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103486904 PE=4 SV=1)

HSP 1 Score: 322 bits (824), Expect = 1.45e-101
Identity = 186/340 (54.71%), Postives = 201/340 (59.12%), Query Frame = 0

Query: 59  RYVRVLCNSHNSRLSSPFSTYQVVPKISSTDRDYSANSNVARTNWLITKL---------- 118
           RY  +LCN HNS LSS FST QVVPKISS  RD+SANSNVAR+NWLITKL          
Sbjct: 27  RYAFLLCNLHNSILSSQFSTCQVVPKISSPVRDFSANSNVARSNWLITKLGKEGKIREAR 86

Query: 119 ------------------------------------------------------------ 178
                                                                       
Sbjct: 87  KVFEEMLDRDVVSWTAVITGYIKCGMIEEAKTLFDRNDAIKNVVTWTALVSGYVKLNRIE 146

Query: 179 -----------------------------------------------------ALMKRRR 238
                                                                ALM+RRR
Sbjct: 147 EARRLFDAMPVKNVVSWNTMIEGYARKGWIDQALDLFEKMPERNVVSWNTVITALMQRRR 206

Query: 239 VDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIITGYAQN 275
           VDEAQ LFN+MPERDVISWT MVAGL+KNGRIDDARL+FDKMP RNVVSWNAII GYAQN
Sbjct: 207 VDEAQALFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNAIIIGYAQN 266

BLAST of Cp4.1LG03g08670 vs. TAIR 10
Match: AT2G35030.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 231.5 bits (589), Expect = 1.0e-60
Identity = 104/173 (60.12%), Postives = 139/173 (80.35%), Query Frame = 0

Query: 102 NWLITKLALMKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERN 161
           +W     AL++R R+DEA  LF +MP RDV+SWTAMV GLAKNG++D+AR +FD MPERN
Sbjct: 173 SWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERN 232

Query: 162 VVSWNAIITGYAQNMRLDEAFELFEKIPERDVPSWNAMITGFIQNGKLERAVDLFYKMPN 221
           ++SWNA+ITGYAQN R+DEA +LF+ +PERD  SWN MITGFI+N ++ +A  LF +MP 
Sbjct: 233 IISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMPE 292

Query: 222 KNVVSWTAMISGHVQDGQSEEALKIFSEMQAANNVKPNEGTFVSVLGACSNLA 275
           KNV+SWT MI+G+V++ ++EEAL +FS+M    +VKPN GT+VS+L ACS+LA
Sbjct: 293 KNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLA 345

BLAST of Cp4.1LG03g08670 vs. TAIR 10
Match: AT4G02750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 169.1 bits (427), Expect = 6.1e-42
Identity = 81/177 (45.76%), Postives = 122/177 (68.93%), Query Frame = 0

Query: 97  NVARTNWLITKLALMKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDK 156
           +V   N +IT  A  +  ++DEA++LF++ P +DV +WTAMV+G  +N  +++AR +FDK
Sbjct: 249 DVVSWNTIITGYA--QSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDK 308

Query: 157 MPERNVVSWNAIITGYAQNMRLDEAFELFEKIPERDVPSWNAMITGFIQNGKLERAVDLF 216
           MPERN VSWNA++ GY Q  R++ A ELF+ +P R+V +WN MITG+ Q GK+  A +LF
Sbjct: 309 MPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLF 368

Query: 217 YKMPNKNVVSWTAMISGHVQDGQSEEALKIFSEMQAANNVKPNEGTFVSVLGACSNL 274
            KMP ++ VSW AMI+G+ Q G S EAL++F +M+     + N  +F S L  C+++
Sbjct: 369 DKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGG-RLNRSSFSSALSTCADV 422

BLAST of Cp4.1LG03g08670 vs. TAIR 10
Match: AT1G32415.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 162.5 bits (410), Expect = 5.7e-40
Identity = 78/177 (44.07%), Postives = 115/177 (64.97%), Query Frame = 0

Query: 102 NWLITKLALMKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERN 161
           +W +   AL    R ++A ELF++MPER+V+SW  +V GL +NG ++ A+ VFD MP R+
Sbjct: 140 SWTVMLTALCDDGRSEDAVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRD 199

Query: 162 VVSWNAIITGYAQNMRLDEAFELFEKIPERDVPSWNAMITGFIQNGKLERAVDLFYKMPN 221
           VVSWNA+I GY +N  ++EA  LF  + E++V +W +M+ G+ + G +  A  LF +MP 
Sbjct: 200 VVSWNAMIKGYIENDGMEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPE 259

Query: 222 KNVVSWTAMISGHVQDGQSEEALKIFSEMQA-ANNVKPNEGTFVSVLGACSNLAVQF 278
           +N+VSWTAMISG   +    EAL +F EM+   + V PN  T +S+  AC  L V+F
Sbjct: 260 RNIVSWTAMISGFAWNELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVEF 316

BLAST of Cp4.1LG03g08670 vs. TAIR 10
Match: AT1G09410.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 151.0 bits (380), Expect = 1.7e-36
Identity = 68/167 (40.72%), Postives = 110/167 (65.87%), Query Frame = 0

Query: 90  RDYSANSNVARTNWLITKLALMKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDD 149
           R YS        N  IT L+  +  ++ EA++LF+    + + SW +MVAG   N    D
Sbjct: 9   RTYSTTIPPPTANVRITHLS--RIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRD 68

Query: 150 ARLVFDKMPERNVVSWNAIITGYAQNMRLDEAFELFEKIPERDVPSWNAMITGFIQNGKL 209
           AR +FD+MP+RN++SWN +++GY +N  +DEA ++F+ +PER+V SW A++ G++ NGK+
Sbjct: 69  ARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKV 128

Query: 210 ERAVDLFYKMPNKNVVSWTAMISGHVQDGQSEEALKIFSEMQAANNV 257
           + A  LF+KMP KN VSWT M+ G +QDG+ ++A K++  +   +N+
Sbjct: 129 DVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNI 173

BLAST of Cp4.1LG03g08670 vs. TAIR 10
Match: AT5G37570.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 150.2 bits (378), Expect = 2.9e-36
Identity = 97/294 (32.99%), Postives = 163/294 (55.44%), Query Frame = 0

Query: 22  SRATAYAAAPLFLQSSSPGSLRRRGYAISGY--KCLYCIRYVRVLCNSHNSRLSSPFS-T 81
           S + +Y+++ +F +  SPG+     + I GY  K L+    V +L     + L+ P   T
Sbjct: 56  SSSLSYSSS-VFERVPSPGTY-LWNHLIKGYSNKFLF-FETVSILMRMMRTGLARPDEYT 115

Query: 82  YQVVPKISSTDRDYSANSNVARTNWLITKLALMKR--------------RRVDEAQELFN 141
           + +V K+ S +      S+V   + L+ ++   K               + +  A+++F 
Sbjct: 116 FPLVMKVCSNNGQVRVGSSV---HGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFG 175

Query: 142 QMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIITGYAQNMRLDEAFEL 201
           +MPER+ +SWTA+V    K+G +++A+ +FD MPERN+ SWNA++ G  ++  L  A +L
Sbjct: 176 EMPERNAVSWTALVVAYVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKL 235

Query: 202 FEKIPERDVPSWNAMITGFIQNGKLERAVDLFYKMPNKNVVSWTAMISGHVQDGQSEEAL 261
           F+++P+RD+ S+ +MI G+ + G +  A DLF +    +V +W+A+I G+ Q+GQ  EA 
Sbjct: 236 FDEMPKRDIISYTSMIDGYAKGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAF 295

Query: 262 KIFSEMQAANNVKPNEGTFVSVLGACSNLAVQFLQWICSETPSPRLYLEQHTGK 299
           K+FSEM  A NVKP+E   V ++ ACS +    L   C +  S   YL Q   K
Sbjct: 296 KVFSEM-CAKNVKPDEFIMVGLMSACSQMGCFEL---CEKVDS---YLHQRMNK 336

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
O647661.4e-5960.12Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidop... [more]
Q9SY028.6e-4145.76Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX... [more]
P0C7R08.1e-3944.07Pentatricopeptide repeat-containing protein At1g32415, mitochondrial OS=Arabidop... [more]
Q56XI12.4e-3540.72Pentatricopeptide repeat-containing protein At1g09410, mitochondrial OS=Arabidop... [more]
Q9FHR34.2e-3532.99Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis th... [more]
Match NameE-valueIdentityDescription
KAG7017650.16.98e-12762.54Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
KAG6580894.15.73e-12663.66Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
XP_023527853.19.13e-12563.72pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Cucurbita ... [more]
XP_022935077.11.03e-12363.13pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Cucurbita ... [more]
XP_022983729.15.84e-12062.24pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Cucurbita ... [more]
Match NameE-valueIdentityDescription
A0A6J1F4K74.98e-12463.13pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Cucurbit... [more]
A0A6J1J8B42.83e-12062.24pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Cucurbit... [more]
A0A6J1DWF01.01e-10154.71pentatricopeptide repeat-containing protein At2g35030, mitochondrial isoform X1 ... [more]
A0A5A7UH591.45e-10154.71Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3B8F21.45e-10154.71pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Cucumis ... [more]
Match NameE-valueIdentityDescription
AT2G35030.11.0e-6060.12Pentatricopeptide repeat (PPR) superfamily protein [more]
AT4G02750.16.1e-4245.76Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G32415.15.7e-4044.07pentatricopeptide (PPR) repeat-containing protein [more]
AT1G09410.11.7e-3640.72pentatricopeptide (PPR) repeat-containing protein [more]
AT5G37570.12.9e-3632.99Pentatricopeptide repeat (PPR-like) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 222..271
e-value: 6.7E-14
score: 51.8
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 132..162
e-value: 5.4E-7
score: 29.4
coord: 163..192
e-value: 1.6E-7
score: 31.1
coord: 109..130
e-value: 0.058
score: 13.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 132..163
e-value: 2.1E-7
score: 28.7
coord: 225..260
e-value: 6.3E-8
score: 30.3
coord: 195..224
e-value: 7.3E-6
score: 23.8
coord: 163..193
e-value: 7.4E-6
score: 23.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 192..226
score: 11.268274
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 130..164
score: 11.794416
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 92..190
e-value: 3.5E-26
score: 93.6
coord: 191..280
e-value: 1.8E-24
score: 88.1
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 102..254
NoneNo IPR availablePANTHERPTHR47925:SF35BNAA05G08880D PROTEINcoord: 96..274
NoneNo IPR availablePANTHERPTHR47925OS01G0913400 PROTEIN-RELATEDcoord: 96..274

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g08670.1Cp4.1LG03g08670.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding