Cp4.1LG03g08630 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g08630
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	rRNA-processing protein FCF1 homolog
Location	Cp4.1LG03: 2607591 .. 2611140 (-)
RNA-Seq Expression	Cp4.1LG03g08630
Synteny	Cp4.1LG03g08630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGTCTCTCTCCAGCGGGCTTGTACTGATTTTCAACTATATCGTTGTTACTGGTATTCTCCAAATCTCCTCTTAGTTGTTTTTATAGTTTTTTTAAATGACAATACCCTAATATTAAAAAGAAGAAAAAAGCTTGCGGCGAATTAAATTGGGACTTGCTGTTGATTTGTTGCACGTCTGTGAATAGACTTCGATCATCTTTGTATCTCTTTGGTTTCTGCTGGAAACGGAGTTGTTCTGATACCTTGAATTTCTAGCATCTCCCTTTTATGTTTATCAGATAATTAGTGGGAGTAATCTATCCTATTATCCAATTCTCTTGTAATCCTATTTGTATATTCATAGATTATAGTTGGGGAGAAGACAATGAGTTTTTAATTGAATTGAACTTCTCTTACTCAGATTAACCAATTCAAAATCCAATGGGGAGGGCCAAGAAAGGACCCAAATTTGCAGTCGTGAAGAAGATGATCTCTTCTAAAGCGATTAAAAAGTATGCCTTCTATATTTTCTTTTGAATTGATAACTTTATCCTATTTTGTTTCAATCTTTTATTTTTCTCTTGTTTTTTTGTTTTTAGCTACAAGGAAGAGGTCTTGAATCCAAAAAAGAAAGATCTAACGAAAGAAAATCTCCCGAGAAACGTGTAAGGAACCTTTTGAGCTGACTGTTATGTGCTCTGTATTAATAATTTTTTCTACTCGTTGTCTATGACTAATTCATGCTTGCATTGTTGTTAATTCAGTCCAAATGTTCCTTCAGCACTTTTCTTCAAATACAACACTGCATTGGGGCCCCCTTATCGGGTTTTGGTGGATACAAATTTCATCAATTTCTCCATTCAAAACAAAGTGAGTGCTTCAAATTTTTATAACTATCTGATTTCGACTCATTTTATCGTGTATATAACTAAAGTGAGTGCTTCAAATTTTTATAACTGTCTGATTTCGATATGTAAAGCTCATTTTATTATGGATTATTTGAATTGAATTGAATTGAAGTGGTTTTCTTCTTCTTTTCGTTCTGGTGCAGTTGGACTTGGAGAAGGGAATGATGGATTGTCTGTATGCAAAATGTAAGTTGCACTTGCAGAATTTTTTTTTATTATAATTTGAAATATGAGAAGTGATAATTAGCTGACATGTGTGCTTACTTGTGATCGTGTTATAGGCACCCCTTGTATAACAGATTGCGTGATGGCTGAACTTGAGCGATTAGGTCAGAAGTATCGCGTTGCTCTTAGGTAAATTCATGTTTAATTTGTGATATTTCAGAACATGAATTTTCTATGTTCTTAAGTATCGCGTTGCTGTTAGGTAAATTCATGTTTAATTTGTGATATTTCAGAACATGAATTTTTATGTTCTCATTTTTGGGTACTATACACATGTATGTACACATTCAGATGCTTTTTGAGATTCGCTAGAGTTAGTCGATATTGTGTGCGCATCTGGTCTTTAACTTTTTAGAATTTTGAATGGCAGCACTAATCAAATTGTTGATTGAAGATCATGAAAAAAAAAAAAAAATCTATGAAAAATTTAGTGTTATGATTGGCTACCTGTAAGAAGCAACTTTCATTTTTTATTACTCTCCTTGACAGTTTCTCAAGAAATTTCTGGCTCAATATTAATCCAAGCAGTCTTATCTTTATTTGTCTTTTAGAAAAGGTCTTAGCTTTACCCTTGATTTGAGCAAGAATCTGAAATAAACAGCTCCTCCATTAACAACATTTTTGGACATACAGCCAAAATCTTTGGACGAACACGGTGAAAGCTTAATTTTGCACATTATGAATGGAAAGAAATAAAATAAGGTTTTCATATACTTTCATGGCGATAGGATTCTTTGCAAACAATACTATATTCTTGGTTTTTCTTTGGTGTTCTCTTTCTTGTTACTTTTGTAAATATATTTTTCTTAAAGATCAATGCTTGTTTCCTTCTTTTGCATCTCTCTTGTTGGTACTGATTAGTATTTTTGGGCTCGAGCAGAATAGCTAAGGACCCACGATTCGAGAGACTACCATGTACTCATAAAGGAACCTATGCTGATGATTGCCTTGTCGAAAGGGTGACTCAGGTGAGACTGAAAGCTTTTTGCCCATGATCATGTTCATAAACGATGAGTTTTCCGACTTCATGTTTGTTCATCGTTATACATGTCGCAAACCAGTTTAAATTGTATCTCTCTTCTTTAAGCTTATCTTCATAAAGAAACTATCATATAGTTAGCTACAGACTTATAGTATGGTTATTATATTTGTAAGCTAGTCAACATTTTTTTTAAAAAAGATACCAAGGAAGAATCGGGTACCGAAGCTCTCACGATGGATAAAATTATAAGAAAAAAGGGGTGAATTATTGTTTTGAAATTGAAATGTTCATAGTGAGCTAAATGCTTCTCTTTCACTGTTTTGGTATCTTTTTAACAGAAGTTTTGTTTGTGTGCAGCATAAGTGTTATATCGTTGCCACTTGTGACAGAGATTTAAAGCGTAGGATTCGTAAGGTATAATGAAAAGAGATATAATCCGACCATAATAGTTGGCAATATAGTTAGATAAAGTAACGTGTTTATTTTATTGCAGATTCCTGGTGTACCAATCATGTACATAACCCGACATCAGTATTCAATTGAGCGGTTGCCTGAAGCAACAATGGGAGGAGGTAGGCTAAACATGTCTAACCCATATAATAAATGTTAATGGACTTAGTTTCTTATTTGTCTAACCCATATAGAATGATGGAAGGATTATTCAAGTTCTTGTTCGGTCATTCAACCCAACGATTGAATTCGTTTATGGTCCTTTGATTTATCTTATTTCTAATTGGTGGTGATAATGAATGGGTCTTTCTTTTTGTGATGTTCCACATTGGTTCGGGAGGAGAACAAAACACCCTTTATAAGGGTGTGGAAACCTTCCCCTAGTAGATGCCTAGTGGGGAAGCCCACAAGGGAAAGCCCAAAAACCTTGAGGGGAAGCCCAGATGGGAAAGCCCAAAGAGGACAGTATCTGGATGACGTTCCGCTGTGTAACTTTGAAATATGTGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAACCCAAAGAGGACAATATCTGCTAGCGGTGGATCTGGGCCGTTACACTTTCTGTATCTCTGTTTGAGTTGCGGTGACGAAGTCTTTTTATATTTTTTGTACACTAATATTTGACATTTTTATTATGGTTGATGCAGCTCCAAGGATGTGATTGTGGCAGTTTGCAAGGATGACAAAAGGAAAAGAATTTTTGAAGAGGTTTCCCCATGTAACTTACTTTTGGCCTTAGGTTAATGCTGTATTTATACGGTGTTTAAGATTATATTTTTGACTGGCATGAGCTTAGTCTGATAGAATTAATCACATATTTGTTTGAATGAATATCAGCCATATCATATATGGTGGATTTGCTTCTCCACCACAAGTTAAAAATATCTCAAGCTCACCACAAGGTGTGAATCCACCTAAAGGTCAAACTTAATGTCTTGGACCATGTCTAAGCACTTAGTTTGAGGCAAATAGTATTG

mRNA sequence

CAGTCTCTCTCCAGCGGGCTTGTACTGATTTTCAACTATATCGTTGTTACTGATTAACCAATTCAAAATCCAATGGGGAGGGCCAAGAAAGGACCCAAATTTGCAGTCGTGAAGAAGATGATCTCTTCTAAAGCGATTAAAAACTACAAGGAAGAGGTCTTGAATCCAAAAAAGAAAGATCTAACGAAAGAAAATCTCCCGAGAAACGTTCCAAATGTTCCTTCAGCACTTTTCTTCAAATACAACACTGCATTGGGGCCCCCTTATCGGGTTTTGGTGGATACAAATTTCATCAATTTCTCCATTCAAAACAAATTGGACTTGGAGAAGGGAATGATGGATTGTCTGTATGCAAAATGCACCCCTTGTATAACAGATTGCGTGATGGCTGAACTTGAGCGATTAGGTCAGAAGTATCGCGTTGCTCTTAGAATAGCTAAGGACCCACGATTCGAGAGACTACCATGTACTCATAAAGGAACCTATGCTGATGATTGCCTTGTCGAAAGGGTGACTCAGCATAAGTGTTATATCGTTGCCACTTGTGACAGAGATTTAAAGCGTAGGATTCGTAAGATTCCTGGTGTACCAATCATGTACATAACCCGACATCAGTATTCAATTGAGCGGTTGCCTGAAGCAACAATGGGAGGAGCTCCAAGGATGTGATTGTGGCAGTTTGCAAGGATGACAAAAGGAAAAGAATTTTTGAAGAGGTTTCCCCATGTAACTTACTTTTGGCCTTAGGTTAATGCTGTATTTATACGGTGTTTAAGATTATATTTTTGACTGGCATGAGCTTAGTCTGATAGAATTAATCACATATTTGTTTGAATGAATATCAGCCATATCATATATGGTGGATTTGCTTCTCCACCACAAGTTAAAAATATCTCAAGCTCACCACAAGGTGTGAATCCACCTAAAGGTCAAACTTAATGTCTTGGACCATGTCTAAGCACTTAGTTTGAGGCAAATAGTATTG

Coding sequence (CDS)

ATGGGGAGGGCCAAGAAAGGACCCAAATTTGCAGTCGTGAAGAAGATGATCTCTTCTAAAGCGATTAAAAACTACAAGGAAGAGGTCTTGAATCCAAAAAAGAAAGATCTAACGAAAGAAAATCTCCCGAGAAACGTTCCAAATGTTCCTTCAGCACTTTTCTTCAAATACAACACTGCATTGGGGCCCCCTTATCGGGTTTTGGTGGATACAAATTTCATCAATTTCTCCATTCAAAACAAATTGGACTTGGAGAAGGGAATGATGGATTGTCTGTATGCAAAATGCACCCCTTGTATAACAGATTGCGTGATGGCTGAACTTGAGCGATTAGGTCAGAAGTATCGCGTTGCTCTTAGAATAGCTAAGGACCCACGATTCGAGAGACTACCATGTACTCATAAAGGAACCTATGCTGATGATTGCCTTGTCGAAAGGGTGACTCAGCATAAGTGTTATATCGTTGCCACTTGTGACAGAGATTTAAAGCGTAGGATTCGTAAGATTCCTGGTGTACCAATCATGTACATAACCCGACATCAGTATTCAATTGAGCGGTTGCCTGAAGCAACAATGGGAGGAGCTCCAAGGATGTGA

Protein sequence

MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATMGGAPRM

Homology

[Close]

BLAST of Cp4.1LG03g08630 vs. ExPASy Swiss-Prot
Match: Q32PD0 (rRNA-processing protein FCF1 homolog OS=Bos taurus OX=9913 GN=FCF1 PE=2 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 3.7e-76
Identity = 140/199 (70.35%), Postives = 164/199 (82.41%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENL--PRNVPNVPSALFFKYN 60
           MG+ KK  K+A +K+M+S +  +  +++ L PKKK+    +    R VP  PS LFF+YN
Sbjct: 1   MGKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60

Query: 61  TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVA 120
           T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+E+LGQKYRVA
Sbjct: 61  TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVA 120

Query: 121 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYIT 180
           LRIAKDPRFERLPCTHKGTYADDCLV+RVTQHKCYIVAT DRDLKRRIRKIPGVPIMYI+
Sbjct: 121 LRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYIS 180

Query: 181 RHQYSIERLPEATMGGAPR 198
            H+Y+IER+P+    GAPR
Sbjct: 181 NHRYNIERMPDDY--GAPR 197

[Close]

BLAST of Cp4.1LG03g08630 vs. ExPASy Swiss-Prot
Match: Q9Y324 (rRNA-processing protein FCF1 homolog OS=Homo sapiens OX=9606 GN=FCF1 PE=1 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 3.7e-76
Identity = 140/199 (70.35%), Postives = 164/199 (82.41%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENL--PRNVPNVPSALFFKYN 60
           MG+ KK  K+A +K+M+S +  +  +++ L PKKK+    +    R VP  PS LFF+YN
Sbjct: 1   MGKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60

Query: 61  TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVA 120
           T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+E+LGQKYRVA
Sbjct: 61  TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVA 120

Query: 121 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYIT 180
           LRIAKDPRFERLPCTHKGTYADDCLV+RVTQHKCYIVAT DRDLKRRIRKIPGVPIMYI+
Sbjct: 121 LRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYIS 180

Query: 181 RHQYSIERLPEATMGGAPR 198
            H+Y+IER+P+    GAPR
Sbjct: 181 NHRYNIERMPDDY--GAPR 197

[Close]

BLAST of Cp4.1LG03g08630 vs. ExPASy Swiss-Prot
Match: Q5RFQ0 (rRNA-processing protein FCF1 homolog OS=Pongo abelii OX=9601 GN=FCF1 PE=2 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 3.7e-76
Identity = 140/199 (70.35%), Postives = 164/199 (82.41%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENL--PRNVPNVPSALFFKYN 60
           MG+ KK  K+A +K+M+S +  +  +++ L PKKK+    +    R VP  PS LFF+YN
Sbjct: 1   MGKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60

Query: 61  TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVA 120
           T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+E+LGQKYRVA
Sbjct: 61  TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVA 120

Query: 121 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYIT 180
           LRIAKDPRFERLPCTHKGTYADDCLV+RVTQHKCYIVAT DRDLKRRIRKIPGVPIMYI+
Sbjct: 121 LRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYIS 180

Query: 181 RHQYSIERLPEATMGGAPR 198
            H+Y+IER+P+    GAPR
Sbjct: 181 NHRYNIERMPDDY--GAPR 197

[Close]

BLAST of Cp4.1LG03g08630 vs. ExPASy Swiss-Prot
Match: Q9CTH6 (rRNA-processing protein FCF1 homolog OS=Mus musculus OX=10090 GN=Fcf1 PE=2 SV=2)

HSP 1 Score: 282.3 bits (721), Expect = 4.1e-75
Identity = 137/199 (68.84%), Postives = 164/199 (82.41%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENL--PRNVPNVPSALFFKYN 60
           MG+ KK  K+A +K+M+S +  +  +++ L PKKK+    +    R VP  PS LFF+YN
Sbjct: 1   MGKQKKTRKYATMKRMLSLRDERLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60

Query: 61  TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVA 120
           T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+E+LGQK+RVA
Sbjct: 61  TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKFRVA 120

Query: 121 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYIT 180
           LRIAKDPRF+RLPCTHKGTYADDCLV+RVTQHKCYIVAT DRDLKRRIRKIPGVPIMY++
Sbjct: 121 LRIAKDPRFDRLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYLS 180

Query: 181 RHQYSIERLPEATMGGAPR 198
            H+Y+IER+P+    GAPR
Sbjct: 181 NHRYNIERMPDDY--GAPR 197

[Close]

BLAST of Cp4.1LG03g08630 vs. ExPASy Swiss-Prot
Match: Q05498 (rRNA-processing protein FCF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=FCF1 PE=1 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.9e-64
Identity = 118/189 (62.43%), Postives = 148/189 (78.31%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60
           MG+AKK  KF +VK+ +++K  +  K+   N K K+     L RN+P V SALFF+YN A
Sbjct: 1   MGKAKKTRKFGLVKRTLNTKKDQRLKKNQENIKTKE--DPELTRNIPQVSSALFFQYNQA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           + PPY+VL+DTNFINFSIQ K+D+ +GMMDCL AKC P ITDCVMAELE+LG KYR+AL+
Sbjct: 61  IKPPYQVLIDTNFINFSIQKKVDIVRGMMDCLLAKCNPLITDCVMAELEKLGPKYRIALK 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           +A+DPR +RL C+HKGTYADDCLV RV QHKCYIVAT D  LK+RIRKIPG+P+M +  H
Sbjct: 121 LARDPRIKRLSCSHKGTYADDCLVHRVLQHKCYIVATNDAGLKQRIRKIPGIPLMSVGGH 180

Query: 181 QYSIERLPE 190
            Y IE+LP+
Sbjct: 181 AYVIEKLPD 187

[Close]

BLAST of Cp4.1LG03g08630 vs. NCBI nr
Match: XP_023526473.1 (rRNA-processing protein FCF1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 405 bits (1041), Expect = 1.15e-142
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA
Sbjct: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180

Query: 181 QYSIERLPEATMGGAPRM 198
           QYSIERLPEATMGGAPRM
Sbjct: 181 QYSIERLPEATMGGAPRM 198

[Close]

BLAST of Cp4.1LG03g08630 vs. NCBI nr
Match: XP_022935178.1 (rRNA-processing protein FCF1 homolog [Cucurbita moschata] >XP_022983875.1 rRNA-processing protein FCF1 homolog [Cucurbita maxima] >XP_022983876.1 rRNA-processing protein FCF1 homolog [Cucurbita maxima] >KAG6580887.1 rRNA-processing protein FCF1-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017645.1 rRNA-processing protein FCF1-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 404 bits (1037), Expect = 4.70e-142
Identity = 196/198 (98.99%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPK+KDLTKENLPRN+PNVPSALFFKYNTA
Sbjct: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKRKDLTKENLPRNIPNVPSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180

Query: 181 QYSIERLPEATMGGAPRM 198
           QYSIERLPEATMGGAPRM
Sbjct: 181 QYSIERLPEATMGGAPRM 198

[Close]

BLAST of Cp4.1LG03g08630 vs. NCBI nr
Match: XP_004136642.1 (rRNA-processing protein FCF1 homolog [Cucumis sativus] >KGN59454.1 hypothetical protein Csa_002627 [Cucumis sativus])

HSP 1 Score: 399 bits (1026), Expect = 2.24e-140
Identity = 192/198 (96.97%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGRAKKGPKFAV+KKM++SKAIKNYKEEVLNPK+KDLTKENLPRNVPNVPSALFFKYNTA
Sbjct: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENLPRNVPNVPSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRK+PGVPIMYITRH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKVPGVPIMYITRH 180

Query: 181 QYSIERLPEATMGGAPRM 198
           QYSIERLPEAT+GGAPRM
Sbjct: 181 QYSIERLPEATIGGAPRM 198

[Close]

BLAST of Cp4.1LG03g08630 vs. NCBI nr
Match: XP_038903189.1 (rRNA-processing protein FCF1 homolog [Benincasa hispida])

HSP 1 Score: 399 bits (1024), Expect = 4.52e-140
Identity = 192/198 (96.97%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGRAKKGPKFAV+KKM++SKAIKNYKE+VLNPK+KDLTKENLPRNVPNVPSALFFKYNTA
Sbjct: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKEQVLNPKRKDLTKENLPRNVPNVPSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180

Query: 181 QYSIERLPEATMGGAPRM 198
           QYSIERLPEAT+GGAPRM
Sbjct: 181 QYSIERLPEATIGGAPRM 198

[Close]

BLAST of Cp4.1LG03g08630 vs. NCBI nr
Match: XP_022158778.1 (rRNA-processing protein FCF1 homolog [Momordica charantia] >XP_022158779.1 rRNA-processing protein FCF1 homolog [Momordica charantia])

HSP 1 Score: 398 bits (1023), Expect = 6.42e-140
Identity = 191/198 (96.46%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60
           MG+AKKGPKFAV+KKM++SKAIKNYK+EVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA
Sbjct: 1   MGKAKKGPKFAVMKKMVTSKAIKNYKQEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRK+PGVPIMYITRH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKVPGVPIMYITRH 180

Query: 181 QYSIERLPEATMGGAPRM 198
           QYSIERLPEAT+GGAPRM
Sbjct: 181 QYSIERLPEATIGGAPRM 198

[Close]

BLAST of Cp4.1LG03g08630 vs. ExPASy TrEMBL
Match: A0A6J1J3K9 (rRNA-processing protein FCF1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111482358 PE=3 SV=1)

HSP 1 Score: 404 bits (1037), Expect = 2.28e-142
Identity = 196/198 (98.99%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPK+KDLTKENLPRN+PNVPSALFFKYNTA
Sbjct: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKRKDLTKENLPRNIPNVPSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180

Query: 181 QYSIERLPEATMGGAPRM 198
           QYSIERLPEATMGGAPRM
Sbjct: 181 QYSIERLPEATMGGAPRM 198

[Close]

BLAST of Cp4.1LG03g08630 vs. ExPASy TrEMBL
Match: A0A6J1F9T9 (rRNA-processing protein FCF1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111442132 PE=3 SV=1)

HSP 1 Score: 404 bits (1037), Expect = 2.28e-142
Identity = 196/198 (98.99%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPK+KDLTKENLPRN+PNVPSALFFKYNTA
Sbjct: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKRKDLTKENLPRNIPNVPSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180

Query: 181 QYSIERLPEATMGGAPRM 198
           QYSIERLPEATMGGAPRM
Sbjct: 181 QYSIERLPEATMGGAPRM 198

[Close]

BLAST of Cp4.1LG03g08630 vs. ExPASy TrEMBL
Match: A0A0A0LEW8 (PINc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G821570 PE=3 SV=1)

HSP 1 Score: 399 bits (1026), Expect = 1.08e-140
Identity = 192/198 (96.97%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGRAKKGPKFAV+KKM++SKAIKNYKEEVLNPK+KDLTKENLPRNVPNVPSALFFKYNTA
Sbjct: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENLPRNVPNVPSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRK+PGVPIMYITRH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKVPGVPIMYITRH 180

Query: 181 QYSIERLPEATMGGAPRM 198
           QYSIERLPEAT+GGAPRM
Sbjct: 181 QYSIERLPEATIGGAPRM 198

[Close]

BLAST of Cp4.1LG03g08630 vs. ExPASy TrEMBL
Match: A0A6J1DX25 (rRNA-processing protein FCF1 homolog OS=Momordica charantia OX=3673 GN=LOC111025245 PE=3 SV=1)

HSP 1 Score: 398 bits (1023), Expect = 3.11e-140
Identity = 191/198 (96.46%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60
           MG+AKKGPKFAV+KKM++SKAIKNYK+EVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA
Sbjct: 1   MGKAKKGPKFAVMKKMVTSKAIKNYKQEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRK+PGVPIMYITRH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKVPGVPIMYITRH 180

Query: 181 QYSIERLPEATMGGAPRM 198
           QYSIERLPEAT+GGAPRM
Sbjct: 181 QYSIERLPEATIGGAPRM 198

[Close]

BLAST of Cp4.1LG03g08630 vs. ExPASy TrEMBL
Match: A0A1S3B8E3 (rRNA-processing protein FCF1 homolog OS=Cucumis melo OX=3656 GN=LOC103486894 PE=3 SV=1)

HSP 1 Score: 395 bits (1016), Expect = 3.63e-139
Identity = 190/198 (95.96%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGRAKKGPKFAV+KK+++SKAIKNYK+EVLNPK+KDLTKENLPRNVPNVPSALFFK+NTA
Sbjct: 1   MGRAKKGPKFAVMKKLVTSKAIKNYKQEVLNPKRKDLTKENLPRNVPNVPSALFFKHNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180

Query: 181 QYSIERLPEATMGGAPRM 198
           QYSIERLPEAT+GGAPRM
Sbjct: 181 QYSIERLPEATIGGAPRM 198

[Close]

BLAST of Cp4.1LG03g08630 vs. TAIR 10
Match: AT2G46230.1 (PIN domain-like family protein )

HSP 1 Score: 347.4 bits (890), Expect = 7.4e-96
Identity = 166/197 (84.26%), Postives = 181/197 (91.88%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60
           MG+AKK  KFAVVKKMIS KA+K+YKEEVLNP KKDLT+  LPRNVP+VP+ LFF YN+ 
Sbjct: 1   MGKAKKPQKFAVVKKMISHKALKHYKEEVLNPNKKDLTE--LPRNVPSVPAGLFFSYNST 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           L PPYRVLVDTNFINFSIQNK+DLEKGM DCLYA CTPCITDCVMAELE+LGQKYRVALR
Sbjct: 61  LVPPYRVLVDTNFINFSIQNKIDLEKGMRDCLYANCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDP FERLPC HKGTYADDCLV+RVTQHKC+IVATCDRDLKRRIRKIPGVPIMY+T  
Sbjct: 121 IAKDPHFERLPCIHKGTYADDCLVDRVTQHKCFIVATCDRDLKRRIRKIPGVPIMYVTNR 180

Query: 181 QYSIERLPEATMGGAPR 198
           +YSIE+LPEAT+GGAPR
Sbjct: 181 KYSIEKLPEATLGGAPR 195

[Close]

BLAST of Cp4.1LG03g08630 vs. TAIR 10
Match: AT2G46230.2 (PIN domain-like family protein )

HSP 1 Score: 297.0 bits (759), Expect = 1.1e-80
Identity = 143/169 (84.62%), Postives = 155/169 (91.72%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60
           MG+AKK  KFAVVKKMIS KA+K+YKEEVLNP KKDLT+  LPRNVP+VP+ LFF YN+ 
Sbjct: 1   MGKAKKPQKFAVVKKMISHKALKHYKEEVLNPNKKDLTE--LPRNVPSVPAGLFFSYNST 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           L PPYRVLVDTNFINFSIQNK+DLEKGM DCLYA CTPCITDCVMAELE+LGQKYRVALR
Sbjct: 61  LVPPYRVLVDTNFINFSIQNKIDLEKGMRDCLYANCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKI 170
           IAKDP FERLPC HKGTYADDCLV+RVTQHKC+IVATCDRDLKRRIRK+
Sbjct: 121 IAKDPHFERLPCIHKGTYADDCLVDRVTQHKCFIVATCDRDLKRRIRKV 167

[Close]

BLAST of Cp4.1LG03g08630 vs. TAIR 10
Match: AT1G26530.1 (PIN domain-like family protein )

HSP 1 Score: 265.8 bits (678), Expect = 2.8e-71
Identity = 137/197 (69.54%), Postives = 156/197 (79.19%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGR KK  KFAV+K MIS KA+K+YKEEVLNP KKDLT+  LPRNVP+VPS LFF +N++
Sbjct: 1   MGRTKKPQKFAVMKMMISHKALKHYKEEVLNPNKKDLTE--LPRNVPSVPSGLFFSHNSS 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           L PPYRVLVDTNFINFSIQNK+DLEKGM                M  + ++   Y     
Sbjct: 61  LVPPYRVLVDTNFINFSIQNKIDLEKGM----------------MVFVRKMHSLYYGL-- 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPC  KGTYADDCLV+RVTQHKC+IVATCDRDLKRRIRKIPGVPIMY+T+ 
Sbjct: 121 IAKDPRFERLPCVLKGTYADDCLVDRVTQHKCFIVATCDRDLKRRIRKIPGVPIMYVTQR 177

Query: 181 QYSIERLPEATMGGAPR 198
           +YSIE+LPEAT+GGAPR
Sbjct: 181 KYSIEKLPEATIGGAPR 177

[Close]

BLAST of Cp4.1LG03g08630 vs. TAIR 10
Match: AT2G34570.1 (PIN domain-like family protein )

HSP 1 Score: 55.1 bits (131), Expect = 7.6e-08
Identity = 39/149 (26.17%), Postives = 73/149 (48.99%), Query Frame = 0


Query: 44  RNVPNVPSALFFKYNTALGPPYRVLVDTNFINFSIQNKL-DLEKGMMDCLYAKCTPCITD 103
           R   N  +  FF        PY+VL D  F++  + N++   +  + + L        T 
Sbjct: 5   RQKKNRRTVRFFTVCYGFRQPYKVLCDGTFVHHLVTNEITPADTAVSELLGGPVKLFTTR 64

Query: 104 CVMAELERLGQKYRVALRIAKDPRFERLPCTH-KGTYADDCLVERV----TQHKCYIVAT 163
           CV+AELE+LG+ +  +L  A+        C H +   AD+CL E +    T+H  + + T
Sbjct: 65  CVIAELEKLGKDFAESLEAAQ--TLNTATCEHEEAKTADECLSEVIGVQNTEH--FFLGT 124

Query: 164 CDRDLKRRIRKIPGVPIMYITRHQYSIER 187
            D + +R++++   VP+++  R+   I++
Sbjct: 125 QDAEFRRKLQQESIVPLVFGLRNILLIDQ 149

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g08630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q32PD0	3.7e-76	70.35	rRNA-processing protein FCF1 homolog OS=Bos taurus OX=9913 GN=FCF1 PE=2 SV=1	[more]
Q9Y324	3.7e-76	70.35	rRNA-processing protein FCF1 homolog OS=Homo sapiens OX=9606 GN=FCF1 PE=1 SV=1	[more]
Q5RFQ0	3.7e-76	70.35	rRNA-processing protein FCF1 homolog OS=Pongo abelii OX=9601 GN=FCF1 PE=2 SV=1	[more]
Q9CTH6	4.1e-75	68.84	rRNA-processing protein FCF1 homolog OS=Mus musculus OX=10090 GN=Fcf1 PE=2 SV=2	[more]
Q05498	1.9e-64	62.43	rRNA-processing protein FCF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S...	[more]

BLAST of Cp4.1LG03g08630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023526473.1	1.15e-142	100.00	rRNA-processing protein FCF1 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022935178.1	4.70e-142	98.99	rRNA-processing protein FCF1 homolog [Cucurbita moschata] >XP_022983875.1 rRNA-p...	[more]
XP_004136642.1	2.24e-140	96.97	rRNA-processing protein FCF1 homolog [Cucumis sativus] >KGN59454.1 hypothetical ...	[more]
XP_038903189.1	4.52e-140	96.97	rRNA-processing protein FCF1 homolog [Benincasa hispida]	[more]
XP_022158778.1	6.42e-140	96.46	rRNA-processing protein FCF1 homolog [Momordica charantia] >XP_022158779.1 rRNA-...	[more]

BLAST of Cp4.1LG03g08630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J3K9	2.28e-142	98.99	rRNA-processing protein FCF1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111482358...	[more]
A0A6J1F9T9	2.28e-142	98.99	rRNA-processing protein FCF1 homolog OS=Cucurbita moschata OX=3662 GN=LOC1114421...	[more]
A0A0A0LEW8	1.08e-140	96.97	PINc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G821570 PE=3 S...	[more]
A0A6J1DX25	3.11e-140	96.46	rRNA-processing protein FCF1 homolog OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A1S3B8E3	3.63e-139	95.96	rRNA-processing protein FCF1 homolog OS=Cucumis melo OX=3656 GN=LOC103486894 PE=...	[more]

BLAST of Cp4.1LG03g08630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46230.1	7.4e-96	84.26	PIN domain-like family protein	[more]
AT2G46230.2	1.1e-80	84.62	PIN domain-like family protein	[more]
AT1G26530.1	2.8e-71	69.54	PIN domain-like family protein	[more]
AT2G34570.1	7.6e-08	26.17	PIN domain-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002716	PIN domain	SMART	SM00670	PIN_9	coord: 65..164 e-value: 8.6E-15 score: 65.1
None	No IPR available	GENE3D	3.40.50.1010		coord: 51..193 e-value: 9.3E-51 score: 173.6
None	No IPR available	PANTHER	PTHR12416	UNCHARACTERIZED	coord: 1..197
None	No IPR available	PANTHER	PTHR12416:SF2	RRNA-PROCESSING PROTEIN FCF1 HOMOLOG	coord: 1..197
IPR006984	rRNA-processing protein Fcf1/Utp23	PFAM	PF04900	Fcf1	coord: 90..186 e-value: 6.0E-40 score: 135.6
IPR037503	rRNA-processing protein Fcf1, PIN domain	CDD	cd09864	PIN_Fcf1-like	coord: 55..185 e-value: 8.02709E-105 score: 295.213
IPR029060	PIN-like domain superfamily	SUPERFAMILY	88723	PIN domain-like	coord: 63..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g08630.1	Cp4.1LG03g08630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0032040	small-subunit processome