Cp4.1LG03g08450 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG03g08450
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionCalcium-transporting ATPase 9, plasma membrane-type-like protein
LocationCp4.1LG03: 2706623 .. 2707499 (-)
RNA-Seq ExpressionCp4.1LG03g08450
SyntenyCp4.1LG03g08450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGACTTTAGTAAAAGGCAATAAACCAGAGTGGTTTTTTCTGACCTTTTTGTTTGGTTTGTTTATATAAATGTTCTCCCACATCGGTTTTCTTGCCAAACTGCTACCTATCCATCCCTTTATATACAGAGATCTTTTCTGTTTGTTTCCCGAGAAAACATGGGTCAGAAAATTTTCCTCTCCCTCCGGCGGCTGCTGCTTCTCTTTCTCGGCTTCTCCCTTCTCCTTTCCTCTGTTGCTGTTCCCACCACAAGTAAGTAAACCCTTTCTCTCTCATAATTCACTCCAATTTTCATCTTTCTCTCTCCTTTTTTTTTTTTAATGAATTTGTGGTTTTTTTTAGGGATTTTCAAATCGACTTTCGATCAGCCATCTGCGCAAGATTTTGTTTTTCAGGTTTTTTTTTTTCTCGAGAAAGTTATTTACTTTTCTGGGAAATTTTCTCGGCAACCAAACAGGTATGATTGAGAAATTGAATTGTGTTTTGATCTATAATTTTTGTAGGATGTGAGAGATTTGGAGTTCAACGGTGGAGATTTATTTGGAAGATTGGTTTTGGAGAACAATGATTATCCCGGCACCGGAGCAAACAACCACCACGATCCAAACACTCCGGCGAAGCCATAACTTTATTTATTTATTTTCTTAACCAAAAATTAGAAGTAAAAGGGTTAGTATTTGAAGAAATGCTCACTTTTTTTTAATAGATATAAACTTGGGTAAATTATAAAAAAGAAAGGGCAATTCTGTCTTTTCACTCCGATGCTTTTAGTCTACTAATAACAGTATTTGATTGGACTTTTTTCCTTTTGTAATATATTATAAGTTTATTGGTTTAATTATTGTCTATCCTATTTATTTATTATTATTATTAATT

mRNA sequence

GTTGACTTTAGTAAAAGGCAATAAACCAGAGTGGTTTTTTCTGACCTTTTTGTTTGGTTTGTTTATATAAATGTTCTCCCACATCGGTTTTCTTGCCAAACTGCTACCTATCCATCCCTTTATATACAGAGATCTTTTCTGTTTGTTTCCCGAGAAAACATGGGTCAGAAAATTTTCCTCTCCCTCCGGCGGCTGCTGCTTCTCTTTCTCGGCTTCTCCCTTCTCCTTTCCTCTGTTGCTGTTCCCACCACAAGGATTTTCAAATCGACTTTCGATCAGCCATCTGCGCAAGATTTTGTTTTTCAGGATGTGAGAGATTTGGAGTTCAACGGTGGAGATTTATTTGGAAGATTGGTTTTGGAGAACAATGATTATCCCGGCACCGGAGCAAACAACCACCACGATCCAAACACTCCGGCGAAGCCATAACTTTATTTATTTATTTTCTTAACCAAAAATTAGAAGTAAAAGGGTTAGTATTTGAAGAAATGCTCACTTTTTTTTAATAGATATAAACTTGGGTAAATTATAAAAAAGAAAGGGCAATTCTGTCTTTTCACTCCGATGCTTTTAGTCTACTAATAACAGTATTTGATTGGACTTTTTTCCTTTTGTAATATATTATAAGTTTATTGGTTTAATTATTGTCTATCCTATTTATTTATTATTATTATTAATT

Coding sequence (CDS)

ATGGGTCAGAAAATTTTCCTCTCCCTCCGGCGGCTGCTGCTTCTCTTTCTCGGCTTCTCCCTTCTCCTTTCCTCTGTTGCTGTTCCCACCACAAGGATTTTCAAATCGACTTTCGATCAGCCATCTGCGCAAGATTTTGTTTTTCAGGATGTGAGAGATTTGGAGTTCAACGGTGGAGATTTATTTGGAAGATTGGTTTTGGAGAACAATGATTATCCCGGCACCGGAGCAAACAACCACCACGATCCAAACACTCCGGCGAAGCCATAA

Protein sequence

MGQKIFLSLRRLLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSAQDFVFQDVRDLEFNGGDLFGRLVLENNDYPGTGANNHHDPNTPAKP
Homology
BLAST of Cp4.1LG03g08450 vs. NCBI nr
Match: KAG7017658.1 (hypothetical protein SDJN02_19524 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 174 bits (441), Expect = 1.08e-54
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0

Query: 1  MGQKIFLSLRRLLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSAQDFVFQDVRDLEFNGGD 60
          MGQKI LSLRRLLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSAQDFVFQDVRDLEFNGGD
Sbjct: 1  MGQKISLSLRRLLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSAQDFVFQDVRDLEFNGGD 60

Query: 61 LFGRLVLENNDYPGTGANNHHDPNTPAKP 89
          LFGRLVLENNDYPGTGANNHHDPNTPAKP
Sbjct: 61 LFGRLVLENNDYPGTGANNHHDPNTPAKP 89

BLAST of Cp4.1LG03g08450 vs. NCBI nr
Match: KAG6580910.1 (hypothetical protein SDJN03_20912, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 171 bits (433), Expect = 1.80e-53
Identity = 86/89 (96.63%), Postives = 87/89 (97.75%), Query Frame = 0

Query: 1  MGQKIFLSLRRLLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSAQDFVFQDVRDLEFNGGD 60
          MGQKI LSL+RLLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSAQDFVFQDVRDLEFNGGD
Sbjct: 1  MGQKISLSLQRLLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSAQDFVFQDVRDLEFNGGD 60

Query: 61 LFGRLVLENNDYPGTGANNHHDPNTPAKP 89
          LFGR VLENNDYPGTGANNHHDPNTPAKP
Sbjct: 61 LFGRFVLENNDYPGTGANNHHDPNTPAKP 89

BLAST of Cp4.1LG03g08450 vs. NCBI nr
Match: KGN59481.1 (hypothetical protein Csa_001422 [Cucumis sativus])

HSP 1 Score: 113 bits (283), Expect = 1.52e-30
Identity = 65/97 (67.01%), Postives = 69/97 (71.13%), Query Frame = 0

Query: 1  MGQKIFLSLRRLLLLFLGFSLLLSS---VAVPTTRIFKSTFDQPSAQDFVFQDVRDLEFN 60
          MGQKIF       LLFL FS LLSS   +AVPTTRI KSTFD PS Q  V QDVRD+E  
Sbjct: 1  MGQKIF----TFFLLFLAFSFLLSSNSSLAVPTTRILKSTFDHPSYQALVHQDVRDMEII 60

Query: 61 GGDLF-----GRLVLENNDYPGTGANNHHDPNTPAKP 89
           GD F     GRL+LENNDYPGTGANNHHDP +PAKP
Sbjct: 61 DGDSFERLFEGRLILENNDYPGTGANNHHDPKSPAKP 93

BLAST of Cp4.1LG03g08450 vs. NCBI nr
Match: KAA0053852.1 (hypothetical protein E6C27_scaffold135G002430 [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (262), Expect = 2.47e-27
Identity = 63/98 (64.29%), Postives = 69/98 (70.41%), Query Frame = 0

Query: 1  MGQKIFLSLRRLLLLFLGFSLLLSS---VAVPTTRIFKSTFDQ-PSAQDFVFQDVRDLEF 60
          MGQKIF       LLFL FS LLSS    AVPTTRI KSTF++ PS Q  V +DVRDLE 
Sbjct: 1  MGQKIF----TFFLLFLAFSFLLSSSSSFAVPTTRILKSTFERHPSYQALVHEDVRDLEI 60

Query: 61 NGGDLF-----GRLVLENNDYPGTGANNHHDPNTPAKP 89
            GD F     GRL+LENNDYPGTGANNHHDP +PA+P
Sbjct: 61 IDGDSFERLFEGRLILENNDYPGTGANNHHDPKSPARP 94

BLAST of Cp4.1LG03g08450 vs. NCBI nr
Match: KAG6596972.1 (hypothetical protein SDJN03_10152, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028446.1 hypothetical protein SDJN02_09627 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105 bits (261), Expect = 3.93e-27
Identity = 59/96 (61.46%), Postives = 66/96 (68.75%), Query Frame = 0

Query: 1  MGQKIFLSLRRLLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSAQDFVFQDVRDLEFNGGD 60
          MG K  L L   LLLFL F+ L+SS AVPTTR+ +S FD PSAQ  VFQD RDLE +G D
Sbjct: 1  MGHKPLLPLT-FLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGED 60

Query: 61 LF---------GRLVLENNDYPGTGANNHHDPNTPA 87
                     GR+VLENNDYPGTGANNHHDP +PA
Sbjct: 61 SLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPA 95

BLAST of Cp4.1LG03g08450 vs. ExPASy TrEMBL
Match: A0A0A0LHJ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822320 PE=4 SV=1)

HSP 1 Score: 113 bits (283), Expect = 7.35e-31
Identity = 65/97 (67.01%), Postives = 69/97 (71.13%), Query Frame = 0

Query: 1  MGQKIFLSLRRLLLLFLGFSLLLSS---VAVPTTRIFKSTFDQPSAQDFVFQDVRDLEFN 60
          MGQKIF       LLFL FS LLSS   +AVPTTRI KSTFD PS Q  V QDVRD+E  
Sbjct: 1  MGQKIF----TFFLLFLAFSFLLSSNSSLAVPTTRILKSTFDHPSYQALVHQDVRDMEII 60

Query: 61 GGDLF-----GRLVLENNDYPGTGANNHHDPNTPAKP 89
           GD F     GRL+LENNDYPGTGANNHHDP +PAKP
Sbjct: 61 DGDSFERLFEGRLILENNDYPGTGANNHHDPKSPAKP 93

BLAST of Cp4.1LG03g08450 vs. ExPASy TrEMBL
Match: A0A5A7UDI6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G002430 PE=4 SV=1)

HSP 1 Score: 105 bits (262), Expect = 1.19e-27
Identity = 63/98 (64.29%), Postives = 69/98 (70.41%), Query Frame = 0

Query: 1  MGQKIFLSLRRLLLLFLGFSLLLSS---VAVPTTRIFKSTFDQ-PSAQDFVFQDVRDLEF 60
          MGQKIF       LLFL FS LLSS    AVPTTRI KSTF++ PS Q  V +DVRDLE 
Sbjct: 1  MGQKIF----TFFLLFLAFSFLLSSSSSFAVPTTRILKSTFERHPSYQALVHEDVRDLEI 60

Query: 61 NGGDLF-----GRLVLENNDYPGTGANNHHDPNTPAKP 89
            GD F     GRL+LENNDYPGTGANNHHDP +PA+P
Sbjct: 61 IDGDSFERLFEGRLILENNDYPGTGANNHHDPKSPARP 94

BLAST of Cp4.1LG03g08450 vs. ExPASy TrEMBL
Match: A0A6A6KJS2 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_004666 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 9.63e-23
Identity = 56/97 (57.73%), Postives = 67/97 (69.07%), Query Frame = 0

Query: 1  MGQKIFLSLRRLLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSA-QDFVFQDVRDL----- 60
          M  K FLS+R LLLLFLGFS +LSS+AVP+TR  KST + PS+ QDF+ QD  DL     
Sbjct: 1  MVHKGFLSVR-LLLLFLGFSFVLSSLAVPSTRSLKSTEENPSSVQDFLTQDAMDLNLVEE 60

Query: 61 ---EFNGGDLFGRLVLENNDYPGTGANNHHDPNTPAK 88
             +   G + GR+ LEN DYPGTGANNHHDP TP +
Sbjct: 61 QVLDLGEGYINGRMDLENTDYPGTGANNHHDPKTPGR 96

BLAST of Cp4.1LG03g08450 vs. ExPASy TrEMBL
Match: B9SI56 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1320880 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.40e-20
Identity = 51/84 (60.71%), Postives = 59/84 (70.24%), Query Frame = 0

Query: 12 LLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSA--QDF-VFQDVRDLEFNGGDL----FGR 71
          LLL FLGFS LLSS+AVPTTR  KST D PS+  QDF + Q+  DL   G +L     GR
Sbjct: 10 LLLFFLGFSFLLSSLAVPTTRSLKSTEDNPSSSVQDFLIHQEGMDLSSQGEELDFIIAGR 69

Query: 72 LVLENNDYPGTGANNHHDPNTPAK 88
          + LE+ DYPGTGANNHHDP TP +
Sbjct: 70 MDLESTDYPGTGANNHHDPKTPGR 93

BLAST of Cp4.1LG03g08450 vs. ExPASy TrEMBL
Match: A0A5J4ZL62 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_015769 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.97e-20
Identity = 50/93 (53.76%), Postives = 63/93 (67.74%), Query Frame = 0

Query: 1  MGQKIFLSLRRLLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSAQDFVFQDVRDLEFNGGD 60
          M  K FL   RLL+LFL  S +LS+ AVPT+R  KS  + P+AQDF+ Q V D++ +G  
Sbjct: 1  MEHKAFL---RLLVLFLFLSFVLSTAAVPTSRSLKSIEEDPTAQDFLAQGVMDMKTDGEL 60

Query: 61 LF-----GRLVLENNDYPGTGANNHHDPNTPAK 88
          L      GR+ LE+NDYPGTGANNHHDP TP +
Sbjct: 61 LERQFIEGRMDLESNDYPGTGANNHHDPKTPGR 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG7017658.11.08e-5498.88hypothetical protein SDJN02_19524 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6580910.11.80e-5396.63hypothetical protein SDJN03_20912, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN59481.11.52e-3067.01hypothetical protein Csa_001422 [Cucumis sativus][more]
KAA0053852.12.47e-2764.29hypothetical protein E6C27_scaffold135G002430 [Cucumis melo var. makuwa][more]
KAG6596972.13.93e-2761.46hypothetical protein SDJN03_10152, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A0A0LHJ07.35e-3167.01Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822320 PE=4 SV=1[more]
A0A5A7UDI61.19e-2764.29Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A6A6KJS29.63e-2357.73Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_004666 PE=4 SV=1[more]
B9SI562.40e-2060.71Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1320880 PE=4 SV=1[more]
A0A5J4ZL628.97e-2053.76Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_015769 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33474:SF28PROTEIN, PUTATIVE-RELATEDcoord: 5..88
NoneNo IPR availablePANTHERPTHR33474TRANSMEMBRANE PROTEINcoord: 5..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g08450.1Cp4.1LG03g08450.1mRNA