Cp4.1LG03g07260 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG03g07260
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionPentatricopeptide repeat-containing protein
LocationCp4.1LG03: 3535472 .. 3538461 (-)
RNA-Seq ExpressionCp4.1LG03g07260
SyntenyCp4.1LG03g07260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCAGCACCGCCACCTCTCACGATCTTCTTTCTCCTTCGACGATCGTTAGTGACCACAAGCACAGCGCGCGACGGTGCGTTACCATTTCGTTCTACCGCGCGAGTAGCAACCACATACGGAGGCGGCGTGTGCGGTGGTTTCGGCAGGTTCGAGCGTCTGTAATTATTGCTCCTCGTCGGCAGTTCGAATTCCGGTGACACCTTAAGCAACGACCCAAGCGTGTAGACGGTGTCTGCTACACTCATCTCCGGCTAGCCTTAAGCGACGACGGCGACAGCAAGCTACGTGAACGACGCGTCCCTCGCCGTTTCGCGCTGCTACCCCCTCTCGTTGCGGCGGCGCGATTTCAACGACGGCGAGTCCAGACTCGCGATAAGCTAAGAACAACATTTGATGATTCTCCACAAACCGAAGACTTCACATTTGCTAAGTGGCGTCTTTCTGTAACTCTGCAGCTTGCAAATCATATACATGAAAAGCAGGGATCAGTTAGTGAAGCTGTTTGAAAAATGTAAGTGTAGCAAAATTCTAGCTGAATTGCAATGTTATACGCTCAAAATTGGCCTTGCTCATGATACTTTCTTCGCCACCAAACTTAGTGCACTGCATGGAAAATACACCTCTCTCGTGCAAGCACATAAGGTGTTCGAAGAAACGCCTAGCAAAACAGTACACCTCTGGAATGCTATTCTTAGAAGCTACTGCAAAGAGAAACAATGGGGACAGACTTTATATCTCTTTAATGACATGGTATCTCATGGAATTTCAAATGGGAAACCTGATAATTTCACCATTCCTATAGTTTTAAAGGCATGCGCAGGGTTGCAGGCACTTAAATTTGGAAAGACAGTTCATGGGTTCATCAAGAAAAATGAGAAAACTGACCTTGACATGTTTGTTGGGGCTGCATTGATTGAACTGTACTCGAAATGTGGAAAAATGCACGAGGCACTTCAAGTTTTCTTGGAATTTCCTCAACCAGATGTAGTTTTATGGACTTCAATGATCACAGGATATGAGCAGAATGGAAATCCTAAGAAGTCAGTTGATTTTTTCTCTCAAATGGTGATGATCGAGCATGTAAATCCTGACCCCGTCACGCTTGTCAGCTTAGCATCGGCTTGTACTCAACTGTCGAATTCAAAGCTTGGAAGTAGCATACATGGCTTTATAACTAGACGAAAACTGGATTATGACTTATCCTTGGCGAACTCGTTGTTGAATCTATATGCGAAGACGGGGTTTGTAAAAGCTGCAGCCAATTTGTTCGAGAAAATGCCGATAAAAGATGTAATTTCATGGAGCTCCTTAATTGCTTGTTATGCTCACAATGGCGCAGCAGCTGAAGCACTAAACCTGTTCAACAAGATGATTGATCAGAAAATCAAATTCAATTCAGTCACAGTGATTGGTGCATTACAAGCATGTGCAGTTGAATGTAACTTAGAAGAGGGAAAGAAGATCCACGAACTTGTTACCAGGAAAGGTTTGGAGTTGGATATTTCAGTTTCCACAGCTCTAATTGATATGTACATGAAGTGTTTTTCACCTGAAGAAGCCCTTGTGGTGTTTGAAAAAATGCCCAAAAAAGATGTGGTTTCTTGGGCTACCTTACTGAGTGGATATTCCCTGAATGGAATGTCCTCCAAATCAATGGGAACCTTCAATACGATGCTGTTGAACAACATAAAACCTGATGCTGTTGCCACAGTGAAAATTCTTGCTTCTTGTTCAGATTTGGGCATTCTCCAACAAGCACTTTGCCTCCATAACTATGTTGTTAAAAGTGGCTTCACCGATAACATTTTCGTAGGAGCTTCGCTTATAGAGCTGTATTCAAAATGTGGCAGCACAGTCAATGCCATGAAAGTATTTGAAGAAATGAAAGTAAAAGACATTGTTACCTGGTCTGCGATCATTGCAGGTTATGGAATCCAGGGACAAGGAAGAGAAGCTTTGAAACTGTTCGACAAAATGAGAGAGACATCAGAAGTTATGGCTAATGAAGTAACATTTCTCTCATTGTTATCTGCTTGTAGCCATGCTGGTTTGATTGAAGAAGGGATCAAGATATTCAACATGATGTTGAATGAATACAGAATAGAACCCAACATGGAGCATTACGGCATCATTGTCGATCTTCTTGGTCGAACAGGAGAACTCGACAGGGCGCTGAACTTCGTTCAGAAAATGCCAATTCCGGCAGGGCCCCATGTCTGGGGTGCCCTGTTAGGTGCCGCTTGTATTCATCACAAATCTGACTTGGGAGAGATTGCAGCAAACAATCTCTTCAAATTAGATCCTAATCATGCTGGGTACTACATACTGCTATCTAACATTTATGCTGTGGAGAATAATTGGGAGAATGTGGGAAAACTTAGGAGTATGATAAAGGAAAAGGGTTTGAAGAAGATACTTGGGCAAAGTGTGATTGAAGCAAGAAGTGAGGTTCATAGTTTTGTAGCTGATGACAGATTACACCCAGAATCTGACCAGATTTATAGGTTGCTAAGAAATTTGAATGTTAATATGAGAGATGAAGGTTATAGCTCTAATTCAAAAACCTATTTGCAGGGCATTGAGGAAATTGTATAGTAAACATTCTATTGTAGGGCATGTAAGTTGAAGAAACTATTCAAATTGAGAGCTAAACACATCGTTAGCCAGTGATTTGATTATCGATCATCTTCCAAACGATAATCCATCAGTTCGCACTAGATTTGTGCTTATTAGCTTAGGGAATGTTAAAACCACAACAAACAATCAGCCAGAGCAGAAAATAGAAATCTATTTATTTGCTATCACAATTCAGTCTCCTGAAGGTATCATCATTTACTAACCTTTGTCATGAGTTTTGATGGCCGAGGAATGGACTTAGGTTGCATATCAGCATCCGAGTCCAACGTGGGACGGGAAGATCGCGGGACTTCCTCATAGGCAGCAACGGTTCCGGCAAGGTCACTCCGCTACATCTCCGGCCGAGGGAAGC

mRNA sequence

GCCAGCACCGCCACCTCTCACGATCTTCTTTCTCCTTCGACGATCGTTAGTGACCACAAGCACAGCGCGCGACGGTGCGTTACCATTTCGTTCTACCGCGCGAGTAGCAACCACATACGGAGGCGGCGTGTGCGGTGGTTTCGGCAGCAACGACCCAAGCGTGTAGACGGTGTCTGCTACACTCATCTCCGGCTAGCCTTAAGCGACGACGGCGACAGCAAGCTACGTGAACGACGCGTCCCTCGCCGTTTCGCGCTGCTACCCCCTCTCGTTGCGGCGGCGCGATTTCAACGACGGCGAGTCCAGACTCGCGATAAGCTAAGAACAACATTTGATGATTCTCCACAAACCGAAGACTTCACATTTGCTAAGTGGCGTCTTTCTTTAGTGAAGCTGTTTGAAAAATGTAAGTGTAGCAAAATTCTAGCTGAATTGCAATGTTATACGCTCAAAATTGGCCTTGCTCATGATACTTTCTTCGCCACCAAACTTAGTGCACTGCATGGAAAATACACCTCTCTCGTGCAAGCACATAAGGTGTTCGAAGAAACGCCTAGCAAAACAGTACACCTCTGGAATGCTATTCTTAGAAGCTACTGCAAAGAGAAACAATGGGGACAGACTTTATATCTCTTTAATGACATGGTATCTCATGGAATTTCAAATGGGAAACCTGATAATTTCACCATTCCTATAACGGGGTTTGTAAAAGCTGCAGCCAATTTGTTCGAGAAAATGCCGATAAAAGATGTAATTTCATGGAGCTCCTTAATTGCTTGTTATGCTCACAATGGCGCAGCAGCTGAAGCACTAAACCTGTTCAACAAGATGATTGATCAGAAAATCAAATTCAATTCAGTCACAGTGATTGGTGCATTACAAGCATGTGCAGTTGAATGTAACTTAGAAGAGGGAAAGAAGATCCACGAACTTGTTACCAGGAAAGGTTTGGAGTTGGATATTTCAGTTTCCACAGCTCTAATTGATATGTACATGAAGTGTTTTTCACCTGAAGAAGCCCTTGTGGTGTTTGAAAAAATGCCCAAAAAAGATGTGGTTTCTTGGGCTACCTTACTGAGTGGATATTCCCTGAATGGAATGTCCTCCAAATCAATGGGAACCTTCAATACGATGCTGTTGAACAACATAAAACCTGATGCTGTTGCCACACATCCGAGTCCAACGTGGGACGGGAAGATCGCGGGACTTCCTCATAGGCAGCAACGGTTCCGGCAAGGTCACTCCGCTACATCTCCGGCCGAGGGAAGC

Coding sequence (CDS)

GCCAGCACCGCCACCTCTCACGATCTTCTTTCTCCTTCGACGATCGTTAGTGACCACAAGCACAGCGCGCGACGGTGCGTTACCATTTCGTTCTACCGCGCGAGTAGCAACCACATACGGAGGCGGCGTGTGCGGTGGTTTCGGCAGCAACGACCCAAGCGTGTAGACGGTGTCTGCTACACTCATCTCCGGCTAGCCTTAAGCGACGACGGCGACAGCAAGCTACGTGAACGACGCGTCCCTCGCCGTTTCGCGCTGCTACCCCCTCTCGTTGCGGCGGCGCGATTTCAACGACGGCGAGTCCAGACTCGCGATAAGCTAAGAACAACATTTGATGATTCTCCACAAACCGAAGACTTCACATTTGCTAAGTGGCGTCTTTCTTTAGTGAAGCTGTTTGAAAAATGTAAGTGTAGCAAAATTCTAGCTGAATTGCAATGTTATACGCTCAAAATTGGCCTTGCTCATGATACTTTCTTCGCCACCAAACTTAGTGCACTGCATGGAAAATACACCTCTCTCGTGCAAGCACATAAGGTGTTCGAAGAAACGCCTAGCAAAACAGTACACCTCTGGAATGCTATTCTTAGAAGCTACTGCAAAGAGAAACAATGGGGACAGACTTTATATCTCTTTAATGACATGGTATCTCATGGAATTTCAAATGGGAAACCTGATAATTTCACCATTCCTATAACGGGGTTTGTAAAAGCTGCAGCCAATTTGTTCGAGAAAATGCCGATAAAAGATGTAATTTCATGGAGCTCCTTAATTGCTTGTTATGCTCACAATGGCGCAGCAGCTGAAGCACTAAACCTGTTCAACAAGATGATTGATCAGAAAATCAAATTCAATTCAGTCACAGTGATTGGTGCATTACAAGCATGTGCAGTTGAATGTAACTTAGAAGAGGGAAAGAAGATCCACGAACTTGTTACCAGGAAAGGTTTGGAGTTGGATATTTCAGTTTCCACAGCTCTAATTGATATGTACATGAAGTGTTTTTCACCTGAAGAAGCCCTTGTGGTGTTTGAAAAAATGCCCAAAAAAGATGTGGTTTCTTGGGCTACCTTACTGAGTGGATATTCCCTGAATGGAATGTCCTCCAAATCAATGGGAACCTTCAATACGATGCTGTTGAACAACATAAAACCTGATGCTGTTGCCACACATCCGAGTCCAACGTGGGACGGGAAGATCGCGGGACTTCCTCATAGGCAGCAACGGTTCCGGCAAGGTCACTCCGCTACATCTCCGGCCGAGGGAAGC

Protein sequence

ASTATSHDLLSPSTIVSDHKHSARRCVTISFYRASSNHIRRRRVRWFRQQRPKRVDGVCYTHLRLALSDDGDSKLRERRVPRRFALLPPLVAAARFQRRRVQTRDKLRTTFDDSPQTEDFTFAKWRLSLVKLFEKCKCSKILAELQCYTLKIGLAHDTFFATKLSALHGKYTSLVQAHKVFEETPSKTVHLWNAILRSYCKEKQWGQTLYLFNDMVSHGISNGKPDNFTIPITGFVKAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMIDQKIKFNSVTVIGALQACAVECNLEEGKKIHELVTRKGLELDISVSTALIDMYMKCFSPEEALVVFEKMPKKDVVSWATLLSGYSLNGMSSKSMGTFNTMLLNNIKPDAVATHPSPTWDGKIAGLPHRQQRFRQGHSATSPAEGS
Homology
[Close]
BLAST of Cp4.1LG03g07260 vs. ExPASy Swiss-Prot
Match: Q9SS97 (Putative pentatricopeptide repeat-containing protein At3g01580 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E87 PE=3 SV=2)

HSP 1 Score: 193.4 bits (490), Expect = 5.4e-48
Identity = 111/280 (39.64%), Postives = 158/280 (56.43%), Query Frame = 0 

Query: 152 IGLAHDTFFATKLSALHGKYTSLVQAHKVFEETPSKTVHLWNAILRSYCKEKQWGQTLYL 211
           + L  D +  + L  ++ K   +++A ++F+E     +  W++++  + K     Q +  
Sbjct: 90  VTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEF 149

Query: 212 FNDMVSHGISNGKPDNFTI-----------------PITGFV------------------ 271
           F  MV    S+  PD  T+                  + GFV                  
Sbjct: 150 FRRMVM--ASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNC 209

Query: 272 -------KAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMIDQKIKFNSVTV 331
                  K A NLF+ +  KDVISWS++IACY  NGAAAEAL +FN M+D   + N  TV
Sbjct: 210 YAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATV 269

Query: 332 IGALQACAVECNLEEGKKIHELVTRKGLELDISVSTALIDMYMKCFSPEEALVVFEKMPK 389
           +  LQACA   +LE+G+K HEL  RKGLE ++ VSTAL+DMYMKCFSPEEA  VF ++P+
Sbjct: 270 LCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPR 329

[Close]
BLAST of Cp4.1LG03g07260 vs. ExPASy Swiss-Prot
Match: O49399 (Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E101 PE=3 SV=2)

HSP 1 Score: 149.8 bits (377), Expect = 6.8e-35
Identity = 77/243 (31.69%), Postives = 135/243 (55.56%), Query Frame = 0 

Query: 150 LKIGLAHDTFFATKLSALHGKYTSLVQAHKVFEETPSKTVHLWNAILRSYCKEKQWGQTL 209
           +K GL  D F    L  ++G+      A KV +  P +    WN++L +Y ++    +  
Sbjct: 167 IKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEAR 226

Query: 210 YLFNDMVSHGISNGKPDNFTI---PITGFVKAAANLFEKMPIKDVISWSSLIACYAHNGA 269
            LF++M    + +    NF I      G VK A  +F+ MP++DV+SW++++  YAH G 
Sbjct: 227 ALFDEMEERNVESW---NFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGC 286

Query: 270 AAEALNLFNKMIDQKI-KFNSVTVIGALQACAVECNLEEGKKIHELVTRKGLELDISVST 329
             E L +FNKM+D    K +  T++  L ACA   +L +G+ +H  + + G+E++  ++T
Sbjct: 287 YNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLAT 346

Query: 330 ALIDMYMKCFSPEEALVVFEKMPKKDVVSWATLLSGYSLNGMSSKSMGTFNTMLLNNIKP 389
           AL+DMY KC   ++AL VF    K+DV +W +++S  S++G+   ++  F+ M+    KP
Sbjct: 347 ALVDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKP 406

[Close]
BLAST of Cp4.1LG03g07260 vs. ExPASy Swiss-Prot
Match: Q9STF3 (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR2 PE=2 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.7e-33
Identity = 93/289 (32.18%), Postives = 139/289 (48.10%), Query Frame = 0 

Query: 148 YTLKIGLAHDTFFATKLSALHGKYTSLVQAHKVFEETPSKTVHLWNAILRSYCKEKQWGQ 207
           + L  G   D F ATKL  ++    S+  A KVF++T  +T+++WNA+ R+        +
Sbjct: 102 HILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEE 161

Query: 208 TLYLFNDMVSHGISNGKPDNFTIPIT---------------------------------- 267
            L L+  M   G+ +   D FT                                      
Sbjct: 162 VLGLYWKMNRIGVES---DRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVY 221

Query: 268 ------------GFVKAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMI--D 327
                       G V  A+ +F  MP+++V+SWS++IACYA NG A EAL  F +M+   
Sbjct: 222 IMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRET 281

Query: 328 QKIKFNSVTVIGALQACAVECNLEEGKKIHELVTRKGLELDISVSTALIDMYMKCFSPEE 387
           +    NSVT++  LQACA    LE+GK IH  + R+GL+  + V +AL+ MY +C   E 
Sbjct: 282 KDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEV 341

Query: 388 ALVVFEKMPKKDVVSWATLLSGYSLNGMSSKSMGTFNTMLLNNIKPDAV 389
              VF++M  +DVVSW +L+S Y ++G   K++  F  ML N   P  V
Sbjct: 342 GQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPV 387

[Close]
BLAST of Cp4.1LG03g07260 vs. ExPASy Swiss-Prot
Match: Q9MAT2 (Pentatricopeptide repeat-containing protein At1g04840 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H64 PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 5.4e-32
Identity = 76/248 (30.65%), Postives = 129/248 (52.02%), Query Frame = 0 

Query: 145 LQCYTLKIGLAHDTFFATKLSALHGKYTSLVQAHKVFEETPSK----TVHLWNAILRSYC 204
           L   TLK  +  D+F    L  ++ K   L  A +VFEE+P +    ++ +WN ++  YC
Sbjct: 148 LHAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYC 207

Query: 205 KEKQWGQTLYLFNDMVSHGISNGKPDNFTIPITGFVKAAANLFEKMPIKDVISWSSLIAC 264
           + K       LF  M      +          +G +  A  LFE MP K+V+SW++LI  
Sbjct: 208 RAKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLING 267

Query: 265 YAHNGAAAEALNLFNKMIDQKIKFNSVTVIGALQACAVECNLEEGKKIHELVTRKGLELD 324
           ++  G    A++ + +M+++ +K N  T+   L AC+    L  G +IH  +   G++LD
Sbjct: 268 FSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLD 327

Query: 325 ISVSTALIDMYMKCFSPEEALVVFEKMPKKDVVSWATLLSGYSLNGMSSKSMGTFNTMLL 384
            ++ TAL+DMY KC   + A  VF  M  KD++SW  ++ G++++G   +++  F  M+ 
Sbjct: 328 RAIGTALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMY 387

Query: 385 NNIKPDAV 389
           +  KPD V
Sbjct: 388 SGEKPDEV 395

[Close]
BLAST of Cp4.1LG03g07260 vs. ExPASy Swiss-Prot
Match: Q56X05 (Pentatricopeptide repeat-containing protein At1g06143 OS=Arabidopsis thaliana OX=3702 GN=EMB1444 PE=2 SV=2)

HSP 1 Score: 137.9 bits (346), Expect = 2.7e-31
Identity = 86/282 (30.50%), Postives = 144/282 (51.06%), Query Frame = 0 

Query: 113 DSPQTEDFTFAKWRLSLVKLFEKCKCSKILAELQCYTLKIGLAHDTFFATKLSALHGKYT 172
           DS     +T++    SLVK       S+    LQ +  K G        T L   +    
Sbjct: 120 DSVSPSSYTYS----SLVK--ASSFASRFGESLQAHIWKFGFGFHVKIQTTLIDFYSATG 179

Query: 173 SLVQAHKVFEETPSKTVHLWNAILRSYCKEKQWGQTLYLFNDM------VSHGISNGKPD 232
            + +A KVF+E P +    W  ++ +Y +         L N M       S+ + NG   
Sbjct: 180 RIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYMG 239

Query: 233 NFTIPITGFVKAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMIDQKIKFNS 292
                  G ++ A +LF +MP+KD+ISW+++I  Y+ N    EA+ +F KM+++ I  + 
Sbjct: 240 ------LGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDE 299

Query: 293 VTVIGALQACAVECNLEEGKKIHELVTRKGLELDISVSTALIDMYMKCFSPEEALVVFEK 352
           VT+   + ACA    LE GK++H    + G  LD+ + +AL+DMY KC S E AL+VF  
Sbjct: 300 VTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFN 359

Query: 353 MPKKDVVSWATLLSGYSLNGMSSKSMGTFNTMLLNNIKPDAV 389
           +PKK++  W +++ G + +G + +++  F  M + ++KP+AV
Sbjct: 360 LPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAV 389

[Close]
BLAST of Cp4.1LG03g07260 vs. NCBI nr
Match: XP_023526081.1 (putative pentatricopeptide repeat-containing protein At3g01580 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 470 bits (1210), Expect = 4.25e-157
Identity = 264/412 (64.08%), Postives = 264/412 (64.08%), Query Frame = 0 

Query: 124 KWRLSLVKLFEKCKCSKILAELQCYTLKIGLAHDTFFATKLSALHGKYTSLVQAHKVFEE 183
           K R  LVKLFEKCKCSKILAELQCYTLKIGLAHDTFFATKLSALHGKYTSLVQAHKVFEE
Sbjct: 2   KSRDQLVKLFEKCKCSKILAELQCYTLKIGLAHDTFFATKLSALHGKYTSLVQAHKVFEE 61

Query: 184 TPSKTVHLWNAILRSYCKEKQWGQTLYLFNDMVSHGISNGKPDNFTIPI----------- 243
           TPSKTVHLWNAILRSYCKEKQWGQTLYLFNDMVSHGISNGKPDNFTIPI           
Sbjct: 62  TPSKTVHLWNAILRSYCKEKQWGQTLYLFNDMVSHGISNGKPDNFTIPIVLKACAGLQAL 121

Query: 244 ------------------------------------------------------------ 303
                                                                       
Sbjct: 122 KFGKTVHGFIKKNEKTDLDMFVGAALIELYSKCGKMHEALQVFLEFPQPDVVLWTSMITG 181

Query: 304 ------------------------------------------------------------ 363
                                                                       
Sbjct: 182 YEQNGNPKKSVDFFSQMVMIEHVNPDPVTLVSLASACTQLSNSKLGSSIHGFITRRKLDY 241

Query: 364 --------------TGFVKAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMI 390
                         TGFVKAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMI
Sbjct: 242 DLSLANSLLNLYAKTGFVKAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMI 301

[Close]
BLAST of Cp4.1LG03g07260 vs. NCBI nr
Match: KAG7017786.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 461 bits (1187), Expect = 1.24e-153
Identity = 260/411 (63.26%), Postives = 261/411 (63.50%), Query Frame = 0 

Query: 124 KWRLSLVKLFEKCKCSKILAELQCYTLKIGLAHDTFFATKLSALHGKYTSLVQAHKVFEE 183
           K R  LVKLFEKCKCSK LAELQCYTLKIGLAHDTFFATKLSALHGKYTSLVQAHKVFEE
Sbjct: 2   KSRDQLVKLFEKCKCSKNLAELQCYTLKIGLAHDTFFATKLSALHGKYTSLVQAHKVFEE 61

Query: 184 TPSKTVHLWNAILRSYCKEKQWGQTLYLFNDMVSHGISNGKPDNFTIPI----------- 243
           TPSKTVHLWNAILRSYCKEKQWGQTLYLFNDMVSHGISNGKPDNFTIPI           
Sbjct: 62  TPSKTVHLWNAILRSYCKEKQWGQTLYLFNDMVSHGISNGKPDNFTIPIVLKACAGLQAL 121

Query: 244 ------------------------------------------------------------ 303
                                                                       
Sbjct: 122 KFGKTVHGFIKKNEKTDLDMFVGAALIELYSKCGKMHEALQVFLEFPQPDVVLWTSMITG 181

Query: 304 ------------------------------------------------------------ 363
                                                                       
Sbjct: 182 YEQNGNPKKSVDFFSQMVMIEHVNPDPVTLVSLASACTQLSNSKLGSSIHGFITRRNLDY 241

Query: 364 --------------TGFVKAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMI 389
                         TG VKAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMI
Sbjct: 242 DLSLANSLLNLYAKTGSVKAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMI 301

[Close]
BLAST of Cp4.1LG03g07260 vs. NCBI nr
Match: XP_022982551.1 (putative pentatricopeptide repeat-containing protein At3g01580 isoform X1 [Cucurbita maxima])

HSP 1 Score: 460 bits (1184), Expect = 3.50e-153
Identity = 259/411 (63.02%), Postives = 260/411 (63.26%), Query Frame = 0 

Query: 124 KWRLSLVKLFEKCKCSKILAELQCYTLKIGLAHDTFFATKLSALHGKYTSLVQAHKVFEE 183
           K R  LVKLFEKCKCSKILAELQCYTLKIGLAHDTFFATKLSALHGKYTSLVQAHKVFEE
Sbjct: 2   KSRDQLVKLFEKCKCSKILAELQCYTLKIGLAHDTFFATKLSALHGKYTSLVQAHKVFEE 61

Query: 184 TPSKTVHLWNAILRSYCKEKQWGQTLYLFNDMVSHGISNGKPDNFTIPI----------- 243
           TPSKTVHLWNA+LRSYCKEKQWGQTLYLFNDMVSHGISNGKPDNFTIPI           
Sbjct: 62  TPSKTVHLWNALLRSYCKEKQWGQTLYLFNDMVSHGISNGKPDNFTIPIVLKACAGLQAL 121

Query: 244 ------------------------------------------------------------ 303
                                                                       
Sbjct: 122 KFGKTVHGFIKKNEKTDLDMFVGAALIELYSKCGKMHEALQVFLEFPQPDVVLWTSMITG 181

Query: 304 ------------------------------------------------------------ 363
                                                                       
Sbjct: 182 YEQNGNPKKSVDFFSQMVMIEHVNPDPVTLVSLASACTQLSNSKLGSSIHGFITRRNLDY 241

Query: 364 --------------TGFVKAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMI 389
                         TG VKAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMI
Sbjct: 242 DLSLANSLLNLYTKTGSVKAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMI 301

[Close]
BLAST of Cp4.1LG03g07260 vs. NCBI nr
Match: KAG6581055.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 460 bits (1183), Expect = 4.95e-153
Identity = 259/411 (63.02%), Postives = 261/411 (63.50%), Query Frame = 0 

Query: 124 KWRLSLVKLFEKCKCSKILAELQCYTLKIGLAHDTFFATKLSALHGKYTSLVQAHKVFEE 183
           K R  LVKLFEKCKCSK LAELQCYTLKIGLAHDTFFATKLSALHGKYTSLV+AHKVFEE
Sbjct: 2   KSRDQLVKLFEKCKCSKNLAELQCYTLKIGLAHDTFFATKLSALHGKYTSLVKAHKVFEE 61

Query: 184 TPSKTVHLWNAILRSYCKEKQWGQTLYLFNDMVSHGISNGKPDNFTIPI----------- 243
           TPSKTVHLWNAILRSYCKEKQWGQTLYLFNDMVSHGISNGKPDNFTIPI           
Sbjct: 62  TPSKTVHLWNAILRSYCKEKQWGQTLYLFNDMVSHGISNGKPDNFTIPIVLKACAGLQAL 121

Query: 244 ------------------------------------------------------------ 303
                                                                       
Sbjct: 122 KFGKTVHGFIKKNEKTDLDMFVGAALIELYSKCGKMHEALQVFLEFPQPDVVLWTSMITG 181

Query: 304 ------------------------------------------------------------ 363
                                                                       
Sbjct: 182 YEQNGNPKKSVDFFSQMVMIEHVNPDPVTLVSLASACTQLSNSKLGSSIHGFITRRNLDY 241

Query: 364 --------------TGFVKAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMI 389
                         TG VKAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMI
Sbjct: 242 DLSLANSLLNLYAKTGSVKAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMI 301

[Close]
BLAST of Cp4.1LG03g07260 vs. NCBI nr
Match: XP_022935091.1 (putative pentatricopeptide repeat-containing protein At3g01580 isoform X1 [Cucurbita moschata])

HSP 1 Score: 459 bits (1181), Expect = 9.90e-153
Identity = 259/411 (63.02%), Postives = 260/411 (63.26%), Query Frame = 0 

Query: 124 KWRLSLVKLFEKCKCSKILAELQCYTLKIGLAHDTFFATKLSALHGKYTSLVQAHKVFEE 183
           K R  LVKLFEKCKCSK LAELQCYTLKIGLAHDTFFATKLSALHGKYTSLVQAHKVFEE
Sbjct: 2   KSRDQLVKLFEKCKCSKNLAELQCYTLKIGLAHDTFFATKLSALHGKYTSLVQAHKVFEE 61

Query: 184 TPSKTVHLWNAILRSYCKEKQWGQTLYLFNDMVSHGISNGKPDNFTIPI----------- 243
           TPSKTVHLWNAILRSYCKEKQWGQTLYLFNDMVSHGISNGKPDNFTIPI           
Sbjct: 62  TPSKTVHLWNAILRSYCKEKQWGQTLYLFNDMVSHGISNGKPDNFTIPIVLKACAGLQAL 121

Query: 244 ------------------------------------------------------------ 303
                                                                       
Sbjct: 122 KFGKTVHGFIKKNEKTDLDMFVGAALIELYSKCGKMHEALQVFLEFPQPDVVLWTSMITG 181

Query: 304 ------------------------------------------------------------ 363
                                                                       
Sbjct: 182 YEQNGNPKKSVDFFSQMVMIEHVNPDPVTLVSLASACTQLSNSKLGSSIHGFITRRNLDY 241

Query: 364 --------------TGFVKAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMI 389
                         TG VKAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMI
Sbjct: 242 GLSLANSLLNLYVKTGSVKAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMI 301

[Close]
BLAST of Cp4.1LG03g07260 vs. ExPASy TrEMBL
Match: A0A6J1IZM6 (putative pentatricopeptide repeat-containing protein At3g01580 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481394 PE=4 SV=1)

HSP 1 Score: 460 bits (1184), Expect = 1.69e-153
Identity = 259/411 (63.02%), Postives = 260/411 (63.26%), Query Frame = 0 

Query: 124 KWRLSLVKLFEKCKCSKILAELQCYTLKIGLAHDTFFATKLSALHGKYTSLVQAHKVFEE 183
           K R  LVKLFEKCKCSKILAELQCYTLKIGLAHDTFFATKLSALHGKYTSLVQAHKVFEE
Sbjct: 2   KSRDQLVKLFEKCKCSKILAELQCYTLKIGLAHDTFFATKLSALHGKYTSLVQAHKVFEE 61

Query: 184 TPSKTVHLWNAILRSYCKEKQWGQTLYLFNDMVSHGISNGKPDNFTIPI----------- 243
           TPSKTVHLWNA+LRSYCKEKQWGQTLYLFNDMVSHGISNGKPDNFTIPI           
Sbjct: 62  TPSKTVHLWNALLRSYCKEKQWGQTLYLFNDMVSHGISNGKPDNFTIPIVLKACAGLQAL 121

Query: 244 ------------------------------------------------------------ 303
                                                                       
Sbjct: 122 KFGKTVHGFIKKNEKTDLDMFVGAALIELYSKCGKMHEALQVFLEFPQPDVVLWTSMITG 181

Query: 304 ------------------------------------------------------------ 363
                                                                       
Sbjct: 182 YEQNGNPKKSVDFFSQMVMIEHVNPDPVTLVSLASACTQLSNSKLGSSIHGFITRRNLDY 241

Query: 364 --------------TGFVKAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMI 389
                         TG VKAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMI
Sbjct: 242 DLSLANSLLNLYTKTGSVKAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMI 301

[Close]
BLAST of Cp4.1LG03g07260 vs. ExPASy TrEMBL
Match: A0A6J1F3K2 (putative pentatricopeptide repeat-containing protein At3g01580 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442064 PE=4 SV=1)

HSP 1 Score: 459 bits (1181), Expect = 4.79e-153
Identity = 259/411 (63.02%), Postives = 260/411 (63.26%), Query Frame = 0 

Query: 124 KWRLSLVKLFEKCKCSKILAELQCYTLKIGLAHDTFFATKLSALHGKYTSLVQAHKVFEE 183
           K R  LVKLFEKCKCSK LAELQCYTLKIGLAHDTFFATKLSALHGKYTSLVQAHKVFEE
Sbjct: 2   KSRDQLVKLFEKCKCSKNLAELQCYTLKIGLAHDTFFATKLSALHGKYTSLVQAHKVFEE 61

Query: 184 TPSKTVHLWNAILRSYCKEKQWGQTLYLFNDMVSHGISNGKPDNFTIPI----------- 243
           TPSKTVHLWNAILRSYCKEKQWGQTLYLFNDMVSHGISNGKPDNFTIPI           
Sbjct: 62  TPSKTVHLWNAILRSYCKEKQWGQTLYLFNDMVSHGISNGKPDNFTIPIVLKACAGLQAL 121

Query: 244 ------------------------------------------------------------ 303
                                                                       
Sbjct: 122 KFGKTVHGFIKKNEKTDLDMFVGAALIELYSKCGKMHEALQVFLEFPQPDVVLWTSMITG 181

Query: 304 ------------------------------------------------------------ 363
                                                                       
Sbjct: 182 YEQNGNPKKSVDFFSQMVMIEHVNPDPVTLVSLASACTQLSNSKLGSSIHGFITRRNLDY 241

Query: 364 --------------TGFVKAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMI 389
                         TG VKAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMI
Sbjct: 242 GLSLANSLLNLYVKTGSVKAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMI 301

[Close]
BLAST of Cp4.1LG03g07260 vs. ExPASy TrEMBL
Match: A0A5A7UUL5 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00170 PE=4 SV=1)

HSP 1 Score: 389 bits (1000), Expect = 7.60e-126
Identity = 221/409 (54.03%), Postives = 238/409 (58.19%), Query Frame = 0 

Query: 126 RLSLVKLFEKCKCSKILAELQCYTLKIGLAHDTFFATKLSALHGKYTSLVQAHKVFEETP 185
           R  LV+LFEKC  SKILA+LQC TLK+GL HD+FFATKLSALH KYTSLVQAHKVF+ETP
Sbjct: 6   RDQLVRLFEKCNSSKILAQLQCLTLKLGLTHDSFFATKLSALHSKYTSLVQAHKVFDETP 65

Query: 186 SKTVHLWNAILRSYCKEKQWGQTLYLFNDMVSHGISNGKPDNFTIPI------------- 245
           +KTVHLWNA+LRSYCKE QW QTLYLF+DMVS+GI+ GKPDN+TIPI             
Sbjct: 66  TKTVHLWNALLRSYCKENQWKQTLYLFHDMVSYGITKGKPDNYTIPIVLKACAGLQALEF 125

Query: 246 ------------------------------------------------------------ 305
                                                                       
Sbjct: 126 GKMVHGFVEKMEKTDVDMFVGASLIELYSKCGKMDEAFQVFLGFSQPDVVMWTSMITGYE 185

Query: 306 ------------------------------------------------------------ 365
                                                                       
Sbjct: 186 QNGNPEKAVDFFSQMVMIEHLNPDPVTLVSLASACTQLSDSKLGSSIHGFMIRRNLDYDL 245

Query: 366 ------------TGFVKAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMIDQ 389
                       TG V AAA LFE+MP KDVISWSSLIACY+ NG  AEALNLFN+MID+
Sbjct: 246 SLANSLLNLYGKTGSVNAAAKLFEEMPTKDVISWSSLIACYSQNGLTAEALNLFNEMIDR 305

[Close]
BLAST of Cp4.1LG03g07260 vs. ExPASy TrEMBL
Match: A0A1S3CMP5 (putative pentatricopeptide repeat-containing protein At3g01580 OS=Cucumis melo OX=3656 GN=LOC103502681 PE=4 SV=1)

HSP 1 Score: 389 bits (1000), Expect = 7.60e-126
Identity = 221/409 (54.03%), Postives = 238/409 (58.19%), Query Frame = 0 

Query: 126 RLSLVKLFEKCKCSKILAELQCYTLKIGLAHDTFFATKLSALHGKYTSLVQAHKVFEETP 185
           R  LV+LFEKC  SKILA+LQC TLK+GL HD+FFATKLSALH KYTSLVQAHKVF+ETP
Sbjct: 6   RDQLVRLFEKCNSSKILAQLQCLTLKLGLTHDSFFATKLSALHSKYTSLVQAHKVFDETP 65

Query: 186 SKTVHLWNAILRSYCKEKQWGQTLYLFNDMVSHGISNGKPDNFTIPI------------- 245
           +KTVHLWNA+LRSYCKE QW QTLYLF+DMVS+GI+ GKPDN+TIPI             
Sbjct: 66  TKTVHLWNALLRSYCKENQWKQTLYLFHDMVSYGITKGKPDNYTIPIVLKACAGLQALEF 125

Query: 246 ------------------------------------------------------------ 305
                                                                       
Sbjct: 126 GKMVHGFVEKMEKTDVDMFVGASLIELYSKCGKMDEAFQVFLGFSQPDVVMWTSMITGYE 185

Query: 306 ------------------------------------------------------------ 365
                                                                       
Sbjct: 186 QNGNPEKAVDFFSQMVMIEHLNPDPVTLVSLASACTQLSDSKLGSSIHGFMIRRNLDYDL 245

Query: 366 ------------TGFVKAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMIDQ 389
                       TG V AAA LFE+MP KDVISWSSLIACY+ NG  AEALNLFN+MID+
Sbjct: 246 SLANSLLNLYGKTGSVNAAAKLFEEMPTKDVISWSSLIACYSQNGLTAEALNLFNEMIDR 305

[Close]
BLAST of Cp4.1LG03g07260 vs. ExPASy TrEMBL
Match: A0A6J1DE08 (putative pentatricopeptide repeat-containing protein At3g01580 OS=Momordica charantia OX=3673 GN=LOC111019914 PE=4 SV=1)

HSP 1 Score: 376 bits (966), Expect = 1.03e-120
Identity = 214/412 (51.94%), Postives = 239/412 (58.01%), Query Frame = 0 

Query: 126 RLSLVKLFEKCKCSKILAELQCYTLKIGLAHDTFFATKLSALHGKYTSLVQAHKVFEETP 185
           R  LVKLFEKC   KILA+LQC+TLK+GLAHD+FFATKLSAL+ KY SLV A KVF+ETP
Sbjct: 4   REELVKLFEKCNNGKILAQLQCHTLKVGLAHDSFFATKLSALYAKYASLVHARKVFDETP 63

Query: 186 SKTVHLWNAILRSYCKEKQWGQTLYLFNDMVS---HGISNGKPDNFTIPI---------- 245
            KTVHLWNA+LRSYC+E QW ++L+LF+DMVS   HG++ GKPDNFT+P+          
Sbjct: 64  HKTVHLWNALLRSYCRENQWERSLHLFHDMVSSSSHGVTEGKPDNFTVPVVLKACAGLQA 123

Query: 246 ------------------------------------------------------------ 305
                                                                       
Sbjct: 124 LKLGKTIHGFVKRNEKTDLDMFVGAALIELYSKCGKMDEALQVFLGFSQPDVVLWTSMIT 183

Query: 306 ------------------------------------------------------------ 365
                                                                       
Sbjct: 184 GYEQNGNPEKAVEFFSQMVVIKHVNPDRVTLVSLVSACTQLSNSKLGSSIHGFITRRNLD 243

Query: 366 ---------------TGFVKAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKM 389
                          TG VK+AANLFEKMP KDVISWSSLIACY+ NGAAAEALNLFN+M
Sbjct: 244 YDLSLANSLLNLYAKTGSVKSAANLFEKMPAKDVISWSSLIACYSLNGAAAEALNLFNEM 303

[Close]
BLAST of Cp4.1LG03g07260 vs. TAIR 10
Match: AT3G01580.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 193.4 bits (490), Expect = 3.8e-49
Identity = 111/280 (39.64%), Postives = 158/280 (56.43%), Query Frame = 0 

Query: 152 IGLAHDTFFATKLSALHGKYTSLVQAHKVFEETPSKTVHLWNAILRSYCKEKQWGQTLYL 211
           + L  D +  + L  ++ K   +++A ++F+E     +  W++++  + K     Q +  
Sbjct: 90  VTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEF 149

Query: 212 FNDMVSHGISNGKPDNFTI-----------------PITGFV------------------ 271
           F  MV    S+  PD  T+                  + GFV                  
Sbjct: 150 FRRMVM--ASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNC 209

Query: 272 -------KAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMIDQKIKFNSVTV 331
                  K A NLF+ +  KDVISWS++IACY  NGAAAEAL +FN M+D   + N  TV
Sbjct: 210 YAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATV 269

Query: 332 IGALQACAVECNLEEGKKIHELVTRKGLELDISVSTALIDMYMKCFSPEEALVVFEKMPK 389
           +  LQACA   +LE+G+K HEL  RKGLE ++ VSTAL+DMYMKCFSPEEA  VF ++P+
Sbjct: 270 LCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPR 329

[Close]
BLAST of Cp4.1LG03g07260 vs. TAIR 10
Match: AT4G18840.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 149.8 bits (377), Expect = 4.8e-36
Identity = 77/243 (31.69%), Postives = 135/243 (55.56%), Query Frame = 0 

Query: 150 LKIGLAHDTFFATKLSALHGKYTSLVQAHKVFEETPSKTVHLWNAILRSYCKEKQWGQTL 209
           +K GL  D F    L  ++G+      A KV +  P +    WN++L +Y ++    +  
Sbjct: 167 IKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEAR 226

Query: 210 YLFNDMVSHGISNGKPDNFTI---PITGFVKAAANLFEKMPIKDVISWSSLIACYAHNGA 269
            LF++M    + +    NF I      G VK A  +F+ MP++DV+SW++++  YAH G 
Sbjct: 227 ALFDEMEERNVESW---NFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGC 286

Query: 270 AAEALNLFNKMIDQKI-KFNSVTVIGALQACAVECNLEEGKKIHELVTRKGLELDISVST 329
             E L +FNKM+D    K +  T++  L ACA   +L +G+ +H  + + G+E++  ++T
Sbjct: 287 YNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLAT 346

Query: 330 ALIDMYMKCFSPEEALVVFEKMPKKDVVSWATLLSGYSLNGMSSKSMGTFNTMLLNNIKP 389
           AL+DMY KC   ++AL VF    K+DV +W +++S  S++G+   ++  F+ M+    KP
Sbjct: 347 ALVDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKP 406

[Close]
BLAST of Cp4.1LG03g07260 vs. TAIR 10
Match: AT3G46790.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-34
Identity = 93/289 (32.18%), Postives = 139/289 (48.10%), Query Frame = 0 

Query: 148 YTLKIGLAHDTFFATKLSALHGKYTSLVQAHKVFEETPSKTVHLWNAILRSYCKEKQWGQ 207
           + L  G   D F ATKL  ++    S+  A KVF++T  +T+++WNA+ R+        +
Sbjct: 102 HILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEE 161

Query: 208 TLYLFNDMVSHGISNGKPDNFTIPIT---------------------------------- 267
            L L+  M   G+ +   D FT                                      
Sbjct: 162 VLGLYWKMNRIGVES---DRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVY 221

Query: 268 ------------GFVKAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMI--D 327
                       G V  A+ +F  MP+++V+SWS++IACYA NG A EAL  F +M+   
Sbjct: 222 IMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRET 281

Query: 328 QKIKFNSVTVIGALQACAVECNLEEGKKIHELVTRKGLELDISVSTALIDMYMKCFSPEE 387
           +    NSVT++  LQACA    LE+GK IH  + R+GL+  + V +AL+ MY +C   E 
Sbjct: 282 KDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEV 341

Query: 388 ALVVFEKMPKKDVVSWATLLSGYSLNGMSSKSMGTFNTMLLNNIKPDAV 389
              VF++M  +DVVSW +L+S Y ++G   K++  F  ML N   P  V
Sbjct: 342 GQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPV 387

[Close]
BLAST of Cp4.1LG03g07260 vs. TAIR 10
Match: AT1G04840.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 140.2 bits (352), Expect = 3.8e-33
Identity = 76/248 (30.65%), Postives = 129/248 (52.02%), Query Frame = 0 

Query: 145 LQCYTLKIGLAHDTFFATKLSALHGKYTSLVQAHKVFEETPSK----TVHLWNAILRSYC 204
           L   TLK  +  D+F    L  ++ K   L  A +VFEE+P +    ++ +WN ++  YC
Sbjct: 148 LHAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYC 207

Query: 205 KEKQWGQTLYLFNDMVSHGISNGKPDNFTIPITGFVKAAANLFEKMPIKDVISWSSLIAC 264
           + K       LF  M      +          +G +  A  LFE MP K+V+SW++LI  
Sbjct: 208 RAKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLING 267

Query: 265 YAHNGAAAEALNLFNKMIDQKIKFNSVTVIGALQACAVECNLEEGKKIHELVTRKGLELD 324
           ++  G    A++ + +M+++ +K N  T+   L AC+    L  G +IH  +   G++LD
Sbjct: 268 FSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLD 327

Query: 325 ISVSTALIDMYMKCFSPEEALVVFEKMPKKDVVSWATLLSGYSLNGMSSKSMGTFNTMLL 384
            ++ TAL+DMY KC   + A  VF  M  KD++SW  ++ G++++G   +++  F  M+ 
Sbjct: 328 RAIGTALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMY 387

Query: 385 NNIKPDAV 389
           +  KPD V
Sbjct: 388 SGEKPDEV 395

[Close]
BLAST of Cp4.1LG03g07260 vs. TAIR 10
Match: AT1G06150.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 137.9 bits (346), Expect = 1.9e-32
Identity = 86/282 (30.50%), Postives = 144/282 (51.06%), Query Frame = 0 

Query: 113  DSPQTEDFTFAKWRLSLVKLFEKCKCSKILAELQCYTLKIGLAHDTFFATKLSALHGKYT 172
            DS     +T++    SLVK       S+    LQ +  K G        T L   +    
Sbjct: 865  DSVSPSSYTYS----SLVK--ASSFASRFGESLQAHIWKFGFGFHVKIQTTLIDFYSATG 924

Query: 173  SLVQAHKVFEETPSKTVHLWNAILRSYCKEKQWGQTLYLFNDM------VSHGISNGKPD 232
             + +A KVF+E P +    W  ++ +Y +         L N M       S+ + NG   
Sbjct: 925  RIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYMG 984

Query: 233  NFTIPITGFVKAAANLFEKMPIKDVISWSSLIACYAHNGAAAEALNLFNKMIDQKIKFNS 292
                   G ++ A +LF +MP+KD+ISW+++I  Y+ N    EA+ +F KM+++ I  + 
Sbjct: 985  ------LGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDE 1044

Query: 293  VTVIGALQACAVECNLEEGKKIHELVTRKGLELDISVSTALIDMYMKCFSPEEALVVFEK 352
            VT+   + ACA    LE GK++H    + G  LD+ + +AL+DMY KC S E AL+VF  
Sbjct: 1045 VTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFN 1104

Query: 353  MPKKDVVSWATLLSGYSLNGMSSKSMGTFNTMLLNNIKPDAV 389
            +PKK++  W +++ G + +G + +++  F  M + ++KP+AV
Sbjct: 1105 LPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAV 1134

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g07260 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SS975.4e-4839.64Putative pentatricopeptide repeat-containing protein At3g01580 OS=Arabidopsis th... [more]
O493996.8e-3531.69Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana OX... [more]
Q9STF31.7e-3332.18Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidop... [more]
Q9MAT25.4e-3230.65Pentatricopeptide repeat-containing protein At1g04840 OS=Arabidopsis thaliana OX... [more]
Q56X052.7e-3130.50Pentatricopeptide repeat-containing protein At1g06143 OS=Arabidopsis thaliana OX... [more]
BLAST of Cp4.1LG03g07260 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023526081.14.25e-15764.08putative pentatricopeptide repeat-containing protein At3g01580 [Cucurbita pepo s... [more]
KAG7017786.11.24e-15363.26putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros... [more]
XP_022982551.13.50e-15363.02putative pentatricopeptide repeat-containing protein At3g01580 isoform X1 [Cucur... [more]
KAG6581055.14.95e-15363.02putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros... [more]
XP_022935091.19.90e-15363.02putative pentatricopeptide repeat-containing protein At3g01580 isoform X1 [Cucur... [more]
BLAST of Cp4.1LG03g07260 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IZM61.69e-15363.02putative pentatricopeptide repeat-containing protein At3g01580 isoform X1 OS=Cuc... [more]
A0A6J1F3K24.79e-15363.02putative pentatricopeptide repeat-containing protein At3g01580 isoform X1 OS=Cuc... [more]
A0A5A7UUL57.60e-12654.03Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa... [more]
A0A1S3CMP57.60e-12654.03putative pentatricopeptide repeat-containing protein At3g01580 OS=Cucumis melo O... [more]
A0A6J1DE081.03e-12051.94putative pentatricopeptide repeat-containing protein At3g01580 OS=Momordica char... [more]
BLAST of Cp4.1LG03g07260 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G01580.13.8e-4939.64Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G18840.14.8e-3631.69Pentatricopeptide repeat (PPR-like) superfamily protein [more]
AT3G46790.11.2e-3432.18Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G04840.13.8e-3330.65Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G06150.11.9e-3230.50basic helix-loop-helix (bHLH) DNA-binding superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 325..351
e-value: 0.0018
score: 18.4
coord: 353..382
e-value: 0.013
score: 15.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 252..285
e-value: 6.8E-5
score: 20.8
coord: 353..387
e-value: 1.7E-4
score: 19.6
coord: 191..221
e-value: 3.8E-7
score: 27.9
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 188..230
e-value: 9.1E-8
score: 32.2
coord: 249..296
e-value: 9.1E-8
score: 32.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 351..385
score: 9.700809
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 250..284
score: 10.500983
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 188..222
score: 10.281757
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 289..392
e-value: 1.2E-18
score: 69.1
coord: 123..232
e-value: 9.1E-9
score: 36.9
NoneNo IPR availablePANTHERPTHR47926PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 240..389
coord: 154..237
NoneNo IPR availablePANTHERPTHR47926:SF118PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATEDcoord: 154..237
NoneNo IPR availablePANTHERPTHR47926:SF118PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATEDcoord: 240..389

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g07260.1Cp4.1LG03g07260.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding