Cp4.1LG03g04310 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g04310
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	40S ribosomal protein s2
Location	Cp4.1LG03: 2411768 .. 2412490 (-)
RNA-Seq Expression	Cp4.1LG03g04310
Synteny	Cp4.1LG03g04310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAGCGAGGCGGATTTGGACGAGGTTTCGGCGGCAGAGGTCGCGGCGGAGGTGACCGCGGCCGCGGAGGTCGCCGTCGCGCTGGTCGACGTGATGAAGAGGAGAAGTGGGTTCCTGTCACTAAGCTAGGGCGCCTCGTAAAAGAAGGTAAGATCCAGTCCTTGGAGCAGATTTATCTCCATTCTCTCCCCATAAAGGAGCACCAGATCATCGATACCCTCATTGGCCCTAGCCTTAAGGACGAGGTTATGAAGATTATGCCAGTCCAGAAGCAGACCCGTGCCGGACAGAGAACTCGTTTCAAGGCTTTCGTCGTTGTCGGCGATGGTAATGGCCATGTGGGTTTGGGAGTAAAGTGTAGTAAGGAAGTTGCCACAGCGATTCGCGGTTCCATTATTTTGGCTAAGTTGTCTGTGATCCCCGTGAGAAGAGGGTATTGGGGTAACAAGATTGGTAAGCCTCACACAGTGCCGTGTAAGGTTACTGGAAAGTGTGGATCCGTCACTGTCCGGATGGTTCCGGCGCCACGAGGTGCTGGGATTGTGGCGGCTCGAGTTCCCAAGAAGGTCTTGCAGTTCGCTGGGATCGAGGACGTGTTTACATCTTCTAGGGGATCGACTAAAACTCTCGGCAACTTTGTTAAGGTTTGGTCTAACTTAAATGGTTACTCTATTCTCATAACTTCAGATTTTGGCTTTGTTCTACTAAAAATACGTTGA

mRNA sequence

ATGGCGGAGCGAGGCGGATTTGGACGAGGTTTCGGCGGCAGAGGTCGCGGCGGAGGTGACCGCGGCCGCGGAGGTCGCCGTCGCGCTGGTCGACGTGATGAAGAGGAGAAGTGGGTTCCTGTCACTAAGCTAGGGCGCCTCGTAAAAGAAGGTAAGATCCAGTCCTTGGAGCAGATTTATCTCCATTCTCTCCCCATAAAGGAGCACCAGATCATCGATACCCTCATTGGCCCTAGCCTTAAGGACGAGGTTATGAAGATTATGCCAGTCCAGAAGCAGACCCGTGCCGGACAGAGAACTCGTTTCAAGGCTTTCGTCGTTGTCGGCGATGGTAATGGCCATGTGGGTTTGGGAGTAAAGTGTAGTAAGGAAGTTGCCACAGCGATTCGCGGTTCCATTATTTTGGCTAAGTTGTCTGTGATCCCCGTGAGAAGAGGGTATTGGGGTAACAAGATTGGTAAGCCTCACACAGTGCCGTGTAAGGTTACTGGAAAGTGTGGATCCGTCACTGTCCGGATGGTTCCGGCGCCACGAGGTGCTGGGATTGTGGCGGCTCGAGTTCCCAAGAAGGTCTTGCAGTTCGCTGGGATCGAGGACGTGTTTACATCTTCTAGGGGATCGACTAAAACTCTCGGCAACTTTGTTAAGGTTTGGTCTAACTTAAATGGTTACTCTATTCTCATAACTTCAGATTTTGGCTTTGTTCTACTAAAAATACGTTGA

Coding sequence (CDS)

ATGGCGGAGCGAGGCGGATTTGGACGAGGTTTCGGCGGCAGAGGTCGCGGCGGAGGTGACCGCGGCCGCGGAGGTCGCCGTCGCGCTGGTCGACGTGATGAAGAGGAGAAGTGGGTTCCTGTCACTAAGCTAGGGCGCCTCGTAAAAGAAGGTAAGATCCAGTCCTTGGAGCAGATTTATCTCCATTCTCTCCCCATAAAGGAGCACCAGATCATCGATACCCTCATTGGCCCTAGCCTTAAGGACGAGGTTATGAAGATTATGCCAGTCCAGAAGCAGACCCGTGCCGGACAGAGAACTCGTTTCAAGGCTTTCGTCGTTGTCGGCGATGGTAATGGCCATGTGGGTTTGGGAGTAAAGTGTAGTAAGGAAGTTGCCACAGCGATTCGCGGTTCCATTATTTTGGCTAAGTTGTCTGTGATCCCCGTGAGAAGAGGGTATTGGGGTAACAAGATTGGTAAGCCTCACACAGTGCCGTGTAAGGTTACTGGAAAGTGTGGATCCGTCACTGTCCGGATGGTTCCGGCGCCACGAGGTGCTGGGATTGTGGCGGCTCGAGTTCCCAAGAAGGTCTTGCAGTTCGCTGGGATCGAGGACGTGTTTACATCTTCTAGGGGATCGACTAAAACTCTCGGCAACTTTGTTAAGGTTTGGTCTAACTTAAATGGTTACTCTATTCTCATAACTTCAGATTTTGGCTTTGTTCTACTAAAAATACGTTGA

Protein sequence

MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIYLHSLPIKEHQIIDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKVWSNLNGYSILITSDFGFVLLKIR

Homology

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BLAST of Cp4.1LG03g04310 vs. ExPASy Swiss-Prot
Match: Q9SCM3 (40S ribosomal protein S2-4 OS=Arabidopsis thaliana OX=3702 GN=RPS2D PE=2 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 2.4e-101
Identity = 192/215 (89.30%), Postives = 203/215 (94.42%), Query Frame = 0


Query: 3   ERGGFGRGFGGRGRG-GGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIYL 62
           +RG FGRGFGGRG G GG RGRG  RRAGR  EEEKWVPVTKLGRLVKEGKI  +EQIYL
Sbjct: 11  DRGDFGRGFGGRGGGRGGPRGRG--RRAGRAPEEEKWVPVTKLGRLVKEGKITKIEQIYL 70

Query: 63  HSLPIKEHQIIDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKC 122
           HSLP+KE+QIID L+GPSLKDEVMKIMPVQKQTRAGQRTRFKAF+VVGD NGHVGLGVKC
Sbjct: 71  HSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKC 130

Query: 123 SKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAG 182
           SKEVATAIRG+IILAKLSV+P+RRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRG+G
Sbjct: 131 SKEVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSG 190

Query: 183 IVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 217
           IVAARVPKKVLQFAGI+DVFTSSRGSTKTLGNFVK
Sbjct: 191 IVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 223

[Close]

BLAST of Cp4.1LG03g04310 vs. ExPASy Swiss-Prot
Match: P49688 (40S ribosomal protein S2-3 OS=Arabidopsis thaliana OX=3702 GN=RPS2C PE=1 SV=2)

HSP 1 Score: 365.5 bits (937), Expect = 4.5e-100
Identity = 193/218 (88.53%), Postives = 202/218 (92.66%), Query Frame = 0


Query: 3   ERGGFGRGFGGRGRGG--GDRGRGGR--RRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQ 62
           ERG FGRGFGGRG  G  G RGRGGR  RR GR  EEEKWVPVTKLGRLV  G I+ +EQ
Sbjct: 15  ERGDFGRGFGGRGGRGDRGGRGRGGRGGRRGGRASEEEKWVPVTKLGRLVAAGHIKQIEQ 74

Query: 63  IYLHSLPIKEHQIIDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 122
           IYLHSLP+KE+QIID LIGP+LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG
Sbjct: 75  IYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 134

Query: 123 VKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 182
           VKCSKEVATAIRG+IILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR
Sbjct: 135 VKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 194

Query: 183 GAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 217
           G+GIVAARVPKKVLQFAGI+DVFTSSRGSTKTLGNFVK
Sbjct: 195 GSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 232

[Close]

BLAST of Cp4.1LG03g04310 vs. ExPASy Swiss-Prot
Match: Q8L8Y0 (40S ribosomal protein S2-1 OS=Arabidopsis thaliana OX=3702 GN=RPS2A PE=2 SV=2)

HSP 1 Score: 359.0 bits (920), Expect = 4.2e-98
Identity = 191/218 (87.61%), Postives = 201/218 (92.20%), Query Frame = 0


Query: 3   ERGGFGRGFGGRGRGGG---DRG-RGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQ 62
           +RG FGRGFGG GRGGG   DRG RG  RR GR  EE KWVPVTKLGRLV + KI  LEQ
Sbjct: 15  DRGDFGRGFGG-GRGGGRGRDRGPRGRGRRGGRASEETKWVPVTKLGRLVADNKITKLEQ 74

Query: 63  IYLHSLPIKEHQIIDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 122
           IYLHSLP+KE+QIID L+GP+LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG
Sbjct: 75  IYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 134

Query: 123 VKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 182
           VKCSKEVATAIRG+IILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR
Sbjct: 135 VKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 194

Query: 183 GAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 217
           G+GIVAARVPKKVLQFAGI+DVFTSSRGSTKTLGNFVK
Sbjct: 195 GSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 231

[Close]

BLAST of Cp4.1LG03g04310 vs. ExPASy Swiss-Prot
Match: Q93VB8 (40S ribosomal protein S2-2 OS=Arabidopsis thaliana OX=3702 GN=RPS2B PE=2 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 4.2e-98
Identity = 191/218 (87.61%), Postives = 201/218 (92.20%), Query Frame = 0


Query: 3   ERGGFGRGFGGRGRGGG---DRG-RGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQ 62
           +RG FGRGFGG GRGGG   DRG RG  RR GR  EE KWVPVTKLGRLV + KI  LEQ
Sbjct: 15  DRGDFGRGFGG-GRGGGRGRDRGPRGRGRRGGRASEETKWVPVTKLGRLVADNKITKLEQ 74

Query: 63  IYLHSLPIKEHQIIDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 122
           IYLHSLP+KE+QIID L+GP+LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG
Sbjct: 75  IYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 134

Query: 123 VKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 182
           VKCSKEVATAIRG+IILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR
Sbjct: 135 VKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 194

Query: 183 GAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 217
           G+GIVAARVPKKVLQFAGI+DVFTSSRGSTKTLGNFVK
Sbjct: 195 GSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 231

[Close]

BLAST of Cp4.1LG03g04310 vs. ExPASy Swiss-Prot
Match: P31009 (40S ribosomal protein S2 OS=Drosophila melanogaster OX=7227 GN=RpS2 PE=1 SV=2)

HSP 1 Score: 317.0 bits (811), Expect = 1.8e-85
Identity = 164/214 (76.64%), Postives = 187/214 (87.38%), Query Frame = 0


Query: 4   RGGFGRGFGGR-GRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIYLH 63
           R GF  GFG R GRGG  RGRG   R   +++ ++WVPVTKLGRLV+EGKI+SLE+IYL+
Sbjct: 8   RSGFRGGFGSRGGRGGRGRGRGRWARGRGKEDSKEWVPVTKLGRLVREGKIKSLEEIYLY 67

Query: 64  SLPIKEHQIIDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCS 123
           SLPIKE +IID  +G SLKDEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCS
Sbjct: 68  SLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCS 127

Query: 124 KEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGI 183
           KEVATAIRG+IILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSV+VR++PAPRG GI
Sbjct: 128 KEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIPAPRGTGI 187

Query: 184 VAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 217
           V+A VPKK+L  AGIED +TS+RGST TLGNF K
Sbjct: 188 VSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAK 221

[Close]

BLAST of Cp4.1LG03g04310 vs. NCBI nr
Match: XP_023522607.1 (40S ribosomal protein S2-4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 418 bits (1075), Expect = 5.31e-146
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIY 60
           MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIY
Sbjct: 1   MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIY 60

Query: 61  LHSLPIKEHQIIDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 120
           LHSLPIKEHQIIDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK
Sbjct: 61  LHSLPIKEHQIIDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 120

Query: 121 CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA 180
           CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA
Sbjct: 121 CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA 180

Query: 181 GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 216
           GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK
Sbjct: 181 GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 216

[Close]

BLAST of Cp4.1LG03g04310 vs. NCBI nr
Match: XP_011652156.1 (40S ribosomal protein S2-4 [Cucumis sativus])

HSP 1 Score: 418 bits (1074), Expect = 7.54e-146
Identity = 215/216 (99.54%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIY 60
           MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIY
Sbjct: 1   MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIY 60

Query: 61  LHSLPIKEHQIIDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 120
           LHSLPIKEHQI+DTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK
Sbjct: 61  LHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 120

Query: 121 CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA 180
           CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA
Sbjct: 121 CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA 180

Query: 181 GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 216
           GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK
Sbjct: 181 GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 216

[Close]

BLAST of Cp4.1LG03g04310 vs. NCBI nr
Match: XP_038906344.1 (40S ribosomal protein S2-4-like [Benincasa hispida])

HSP 1 Score: 418 bits (1074), Expect = 7.54e-146
Identity = 215/216 (99.54%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIY 60
           MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIY
Sbjct: 1   MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIY 60

Query: 61  LHSLPIKEHQIIDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 120
           LHSLPIKEHQI+DTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK
Sbjct: 61  LHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 120

Query: 121 CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA 180
           CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA
Sbjct: 121 CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA 180

Query: 181 GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 216
           GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK
Sbjct: 181 GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 216

[Close]

BLAST of Cp4.1LG03g04310 vs. NCBI nr
Match: XP_022935112.1 (40S ribosomal protein S2-4-like [Cucurbita moschata])

HSP 1 Score: 417 bits (1071), Expect = 2.16e-145
Identity = 215/216 (99.54%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIY 60
           MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIY
Sbjct: 1   MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIY 60

Query: 61  LHSLPIKEHQIIDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 120
           LHSLPIKEHQIIDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK
Sbjct: 61  LHSLPIKEHQIIDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 120

Query: 121 CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA 180
           CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV+MVPAPRGA
Sbjct: 121 CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVQMVPAPRGA 180

Query: 181 GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 216
           GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK
Sbjct: 181 GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 216

[Close]

BLAST of Cp4.1LG03g04310 vs. NCBI nr
Match: XP_008443195.1 (PREDICTED: 40S ribosomal protein S2-3-like [Cucumis melo] >ADN33986.1 40S ribosomal protein s2 [Cucumis melo subsp. melo] >KAA0053922.1 40S ribosomal protein S2-3-like [Cucumis melo var. makuwa] >TYK25482.1 40S ribosomal protein S2-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 417 bits (1071), Expect = 2.16e-145
Identity = 214/216 (99.07%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIY 60
           MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEG+IQSLEQIY
Sbjct: 1   MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGRIQSLEQIY 60

Query: 61  LHSLPIKEHQIIDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 120
           LHSLPIKEHQI+DTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK
Sbjct: 61  LHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 120

Query: 121 CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA 180
           CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA
Sbjct: 121 CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA 180

Query: 181 GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 216
           GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK
Sbjct: 181 GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 216

[Close]

BLAST of Cp4.1LG03g04310 vs. ExPASy TrEMBL
Match: A0A0A0LFC7 (S5 DRBM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G816100 PE=3 SV=1)

HSP 1 Score: 418 bits (1074), Expect = 3.65e-146
Identity = 215/216 (99.54%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIY 60
           MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIY
Sbjct: 1   MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIY 60

Query: 61  LHSLPIKEHQIIDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 120
           LHSLPIKEHQI+DTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK
Sbjct: 61  LHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 120

Query: 121 CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA 180
           CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA
Sbjct: 121 CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA 180

Query: 181 GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 216
           GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK
Sbjct: 181 GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 216

[Close]

BLAST of Cp4.1LG03g04310 vs. ExPASy TrEMBL
Match: A0A5D3DPL0 (40S ribosomal protein S2-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006280 PE=3 SV=1)

HSP 1 Score: 417 bits (1071), Expect = 1.05e-145
Identity = 214/216 (99.07%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIY 60
           MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEG+IQSLEQIY
Sbjct: 1   MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGRIQSLEQIY 60

Query: 61  LHSLPIKEHQIIDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 120
           LHSLPIKEHQI+DTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK
Sbjct: 61  LHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 120

Query: 121 CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA 180
           CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA
Sbjct: 121 CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA 180

Query: 181 GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 216
           GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK
Sbjct: 181 GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 216

[Close]

BLAST of Cp4.1LG03g04310 vs. ExPASy TrEMBL
Match: E5GBY7 (40S ribosomal protein s2 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 417 bits (1071), Expect = 1.05e-145
Identity = 214/216 (99.07%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIY 60
           MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEG+IQSLEQIY
Sbjct: 1   MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGRIQSLEQIY 60

Query: 61  LHSLPIKEHQIIDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 120
           LHSLPIKEHQI+DTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK
Sbjct: 61  LHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 120

Query: 121 CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA 180
           CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA
Sbjct: 121 CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA 180

Query: 181 GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 216
           GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK
Sbjct: 181 GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 216

[Close]

BLAST of Cp4.1LG03g04310 vs. ExPASy TrEMBL
Match: A0A6J1F4N7 (40S ribosomal protein S2-4-like OS=Cucurbita moschata OX=3662 GN=LOC111442079 PE=3 SV=1)

HSP 1 Score: 417 bits (1071), Expect = 1.05e-145
Identity = 215/216 (99.54%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIY 60
           MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIY
Sbjct: 1   MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIY 60

Query: 61  LHSLPIKEHQIIDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 120
           LHSLPIKEHQIIDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK
Sbjct: 61  LHSLPIKEHQIIDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 120

Query: 121 CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA 180
           CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV+MVPAPRGA
Sbjct: 121 CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVQMVPAPRGA 180

Query: 181 GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 216
           GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK
Sbjct: 181 GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 216

[Close]

BLAST of Cp4.1LG03g04310 vs. ExPASy TrEMBL
Match: A0A1S3B7F9 (40S ribosomal protein S2-3-like OS=Cucumis melo OX=3656 GN=LOC103486852 PE=3 SV=1)

HSP 1 Score: 417 bits (1071), Expect = 1.05e-145
Identity = 214/216 (99.07%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIY 60
           MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEG+IQSLEQIY
Sbjct: 1   MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGRIQSLEQIY 60

Query: 61  LHSLPIKEHQIIDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 120
           LHSLPIKEHQI+DTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK
Sbjct: 61  LHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 120

Query: 121 CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA 180
           CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA
Sbjct: 121 CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA 180

Query: 181 GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 216
           GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK
Sbjct: 181 GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 216

[Close]

BLAST of Cp4.1LG03g04310 vs. TAIR 10
Match: AT3G57490.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 369.8 bits (948), Expect = 1.7e-102
Identity = 192/215 (89.30%), Postives = 203/215 (94.42%), Query Frame = 0


Query: 3   ERGGFGRGFGGRGRG-GGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIYL 62
           +RG FGRGFGGRG G GG RGRG  RRAGR  EEEKWVPVTKLGRLVKEGKI  +EQIYL
Sbjct: 11  DRGDFGRGFGGRGGGRGGPRGRG--RRAGRAPEEEKWVPVTKLGRLVKEGKITKIEQIYL 70

Query: 63  HSLPIKEHQIIDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKC 122
           HSLP+KE+QIID L+GPSLKDEVMKIMPVQKQTRAGQRTRFKAF+VVGD NGHVGLGVKC
Sbjct: 71  HSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKC 130

Query: 123 SKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAG 182
           SKEVATAIRG+IILAKLSV+P+RRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRG+G
Sbjct: 131 SKEVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSG 190

Query: 183 IVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 217
           IVAARVPKKVLQFAGI+DVFTSSRGSTKTLGNFVK
Sbjct: 191 IVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 223

[Close]

BLAST of Cp4.1LG03g04310 vs. TAIR 10
Match: AT2G41840.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 365.5 bits (937), Expect = 3.2e-101
Identity = 193/218 (88.53%), Postives = 202/218 (92.66%), Query Frame = 0


Query: 3   ERGGFGRGFGGRGRGG--GDRGRGGR--RRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQ 62
           ERG FGRGFGGRG  G  G RGRGGR  RR GR  EEEKWVPVTKLGRLV  G I+ +EQ
Sbjct: 15  ERGDFGRGFGGRGGRGDRGGRGRGGRGGRRGGRASEEEKWVPVTKLGRLVAAGHIKQIEQ 74

Query: 63  IYLHSLPIKEHQIIDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 122
           IYLHSLP+KE+QIID LIGP+LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG
Sbjct: 75  IYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 134

Query: 123 VKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 182
           VKCSKEVATAIRG+IILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR
Sbjct: 135 VKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 194

Query: 183 GAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 217
           G+GIVAARVPKKVLQFAGI+DVFTSSRGSTKTLGNFVK
Sbjct: 195 GSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 232

[Close]

BLAST of Cp4.1LG03g04310 vs. TAIR 10
Match: AT1G58983.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 359.0 bits (920), Expect = 3.0e-99
Identity = 191/218 (87.61%), Postives = 201/218 (92.20%), Query Frame = 0


Query: 3   ERGGFGRGFGGRGRGGG---DRG-RGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQ 62
           +RG FGRGFGG GRGGG   DRG RG  RR GR  EE KWVPVTKLGRLV + KI  LEQ
Sbjct: 15  DRGDFGRGFGG-GRGGGRGRDRGPRGRGRRGGRASEETKWVPVTKLGRLVADNKITKLEQ 74

Query: 63  IYLHSLPIKEHQIIDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 122
           IYLHSLP+KE+QIID L+GP+LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG
Sbjct: 75  IYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 134

Query: 123 VKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 182
           VKCSKEVATAIRG+IILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR
Sbjct: 135 VKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 194

Query: 183 GAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 217
           G+GIVAARVPKKVLQFAGI+DVFTSSRGSTKTLGNFVK
Sbjct: 195 GSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 231

[Close]

BLAST of Cp4.1LG03g04310 vs. TAIR 10
Match: AT1G59359.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 359.0 bits (920), Expect = 3.0e-99
Identity = 191/218 (87.61%), Postives = 201/218 (92.20%), Query Frame = 0


Query: 3   ERGGFGRGFGGRGRGGG---DRG-RGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQ 62
           +RG FGRGFGG GRGGG   DRG RG  RR GR  EE KWVPVTKLGRLV + KI  LEQ
Sbjct: 15  DRGDFGRGFGG-GRGGGRGRDRGPRGRGRRGGRASEETKWVPVTKLGRLVADNKITKLEQ 74

Query: 63  IYLHSLPIKEHQIIDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 122
           IYLHSLP+KE+QIID L+GP+LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG
Sbjct: 75  IYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 134

Query: 123 VKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 182
           VKCSKEVATAIRG+IILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR
Sbjct: 135 VKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 194

Query: 183 GAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 217
           G+GIVAARVPKKVLQFAGI+DVFTSSRGSTKTLGNFVK
Sbjct: 195 GSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 231

[Close]

BLAST of Cp4.1LG03g04310 vs. TAIR 10
Match: AT1G58380.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 359.0 bits (920), Expect = 3.0e-99
Identity = 191/218 (87.61%), Postives = 201/218 (92.20%), Query Frame = 0


Query: 3   ERGGFGRGFGGRGRGGG---DRG-RGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQ 62
           +RG FGRGFGG GRGGG   DRG RG  RR GR  EE KWVPVTKLGRLV + KI  LEQ
Sbjct: 15  DRGDFGRGFGG-GRGGGRGRDRGPRGRGRRGGRASEETKWVPVTKLGRLVADNKITKLEQ 74

Query: 63  IYLHSLPIKEHQIIDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 122
           IYLHSLP+KE+QIID L+GP+LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG
Sbjct: 75  IYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 134

Query: 123 VKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 182
           VKCSKEVATAIRG+IILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR
Sbjct: 135 VKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 194

Query: 183 GAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 217
           G+GIVAARVPKKVLQFAGI+DVFTSSRGSTKTLGNFVK
Sbjct: 195 GSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 231

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g04310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SCM3	2.4e-101	89.30	40S ribosomal protein S2-4 OS=Arabidopsis thaliana OX=3702 GN=RPS2D PE=2 SV=1	[more]
P49688	4.5e-100	88.53	40S ribosomal protein S2-3 OS=Arabidopsis thaliana OX=3702 GN=RPS2C PE=1 SV=2	[more]
Q8L8Y0	4.2e-98	87.61	40S ribosomal protein S2-1 OS=Arabidopsis thaliana OX=3702 GN=RPS2A PE=2 SV=2	[more]
Q93VB8	4.2e-98	87.61	40S ribosomal protein S2-2 OS=Arabidopsis thaliana OX=3702 GN=RPS2B PE=2 SV=1	[more]
P31009	1.8e-85	76.64	40S ribosomal protein S2 OS=Drosophila melanogaster OX=7227 GN=RpS2 PE=1 SV=2	[more]

BLAST of Cp4.1LG03g04310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023522607.1	5.31e-146	100.00	40S ribosomal protein S2-4-like [Cucurbita pepo subsp. pepo]	[more]
XP_011652156.1	7.54e-146	99.54	40S ribosomal protein S2-4 [Cucumis sativus]	[more]
XP_038906344.1	7.54e-146	99.54	40S ribosomal protein S2-4-like [Benincasa hispida]	[more]
XP_022935112.1	2.16e-145	99.54	40S ribosomal protein S2-4-like [Cucurbita moschata]	[more]
XP_008443195.1	2.16e-145	99.07	PREDICTED: 40S ribosomal protein S2-3-like [Cucumis melo] >ADN33986.1 40S riboso...	[more]

BLAST of Cp4.1LG03g04310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFC7	3.65e-146	99.54	S5 DRBM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G816100 PE=...	[more]
A0A5D3DPL0	1.05e-145	99.07	40S ribosomal protein S2-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
E5GBY7	1.05e-145	99.07	40S ribosomal protein s2 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A6J1F4N7	1.05e-145	99.54	40S ribosomal protein S2-4-like OS=Cucurbita moschata OX=3662 GN=LOC111442079 PE...	[more]
A0A1S3B7F9	1.05e-145	99.07	40S ribosomal protein S2-3-like OS=Cucumis melo OX=3656 GN=LOC103486852 PE=3 SV=...	[more]

BLAST of Cp4.1LG03g04310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57490.1	1.7e-102	89.30	Ribosomal protein S5 family protein	[more]
AT2G41840.1	3.2e-101	88.53	Ribosomal protein S5 family protein	[more]
AT1G58983.1	3.0e-99	87.61	Ribosomal protein S5 family protein	[more]
AT1G59359.1	3.0e-99	87.61	Ribosomal protein S5 family protein	[more]
AT1G58380.1	3.0e-99	87.61	Ribosomal protein S5 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.160.20		coord: 37..142 e-value: 6.1E-56 score: 189.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	PANTHER	PTHR13718:SF102	BNAA03G19630D PROTEIN	coord: 3..217
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 76..145
IPR005324	Ribosomal protein S5, C-terminal	PFAM	PF03719	Ribosomal_S5_C	coord: 163..216 e-value: 5.2E-18 score: 64.3
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 143..232 e-value: 4.0E-40 score: 137.8
IPR005711	Ribosomal protein S5, eukaryotic/archaeal	TIGRFAM	TIGR01020	TIGR01020	coord: 33..217 e-value: 2.3E-87 score: 289.9
IPR013810	Ribosomal protein S5, N-terminal	PFAM	PF00333	Ribosomal_S5	coord: 80..144 e-value: 5.6E-30 score: 103.1
IPR013810	Ribosomal protein S5, N-terminal	PROSITE	PS50881	S5_DSRBD	coord: 80..143 score: 22.755819
IPR000851	Ribosomal protein S5	PANTHER	PTHR13718	RIBOSOMAL S SUBUNIT	coord: 3..217
IPR018192	Ribosomal protein S5, N-terminal, conserved site	PROSITE	PS00585	RIBOSOMAL_S5	coord: 97..129
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 156..217

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g04310.1	Cp4.1LG03g04310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding