Cp4.1LG03g03900 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g03900
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	outer envelope pore protein 16-3, chloroplastic/mitochondrial
Location	Cp4.1LG03: 2063030 .. 2064052 (+)
RNA-Seq Expression	Cp4.1LG03g03900
Synteny	Cp4.1LG03g03900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAACCAAAGGCTGCAGTATCCAAAATATATCTAAGCTTGGAAATATGCAAGCAACTGCTGCAGGACATTTCTGCACCTGGTGATACACCTGACTTATCCTTCCCATACCTACCATGGTGCATTACTTTCTAAAAGGAACCACAATATGCATTTGGTTAAAAATGTGTCATTTCACTTAGCTATATTTATGACGCCAAGACCTCTGTGTTCCAAAGAGCGAGAGACCTCTGTGTACTTTATTAATAGGCAGCCTCCATCCTAGTCTGCACCTCCCTAAAGAATTCTCCTCTCCTATGTTTATCAAAGTTTCTACCTTAAAGACAAATAATTAGTCTGCATCTTAGTAACAACCTCTTAGGCAGGACAGAGGCTTAAGTTTGGACTTGGACTGCAAAAGTTTGCATTCCAACTAAATTAAATGGCGCAAATTGGAGGGAAGTGCTATTTAATACACACACACACAAACACACACAAAATCTAAGACAAAGGAGGGAGGGAGAGAATTTCAAACACTCTTGTAATACCTACTTTCTCCGCTAAAGCTATGACCTTTTCTTCATAATTGTTTTTAATAATTCTAGACCTCATGTCACTCTGAATTAATCCCTACTTGGCTGAATGAATGAAAGTCATATCCACACTATGTAGTACTCGAAATTGTCTCACAAGAGGTGGCAATTGCCTGATATGGGTATAGCTTGATTGTTATATTTGTCACAATAATCCCTATCAGCACATTTTTGTAAAGTGAAGTGTCATTCTCATCTTTCTGATCCGTTGCTTTAGGATGTGTTCCTAATCTGTTTTCTTTTCATGTCCCTAATAAGTAAACTTGGTCTGAAAGTGGTTAACTGTTTCTATTGTTTTCTTTCAGGAAAAAGTATTCCAACAGCCATTTCTGCTGGAGCTGCTTTGGCAGTTACTTCTGCACTAATTGATGTTGGTGGTCAGACCACAAGAATTGACAATGGCAAGGAGTACTACCCTTACACCACCAAGAAGAGATCCCACATCGAGTAG

mRNA sequence

ATGCAACCAAAGGCTGCAGTATCCAAAATATATCTAAGCTTGGAAATATGCAAGCAACTGCTGCAGGACATTTCTGCACCTGGAAAAAGTATTCCAACAGCCATTTCTGCTGGAGCTGCTTTGGCAGTTACTTCTGCACTAATTGATGTTGGTGGTCAGACCACAAGAATTGACAATGGCAAGGAGTACTACCCTTACACCACCAAGAAGAGATCCCACATCGAGTAG

Coding sequence (CDS)

ATGCAACCAAAGGCTGCAGTATCCAAAATATATCTAAGCTTGGAAATATGCAAGCAACTGCTGCAGGACATTTCTGCACCTGGAAAAAGTATTCCAACAGCCATTTCTGCTGGAGCTGCTTTGGCAGTTACTTCTGCACTAATTGATGTTGGTGGTCAGACCACAAGAATTGACAATGGCAAGGAGTACTACCCTTACACCACCAAGAAGAGATCCCACATCGAGTAG

Protein sequence

MQPKAAVSKIYLSLEICKQLLQDISAPGKSIPTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE

Homology

[Close]

BLAST of Cp4.1LG03g03900 vs. ExPASy Swiss-Prot
Match: O48528 (Outer envelope pore protein 16-3, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=OEP163 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.9e-13
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 29  KSIPTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 76
           +SIPTAI+AGA LAVTSALID GGQTTR+DNG+EYYPYT +KR+  +
Sbjct: 112 RSIPTAIAAGATLAVTSALIDSGGQTTRVDNGREYYPYTVEKRAEAD 158

[Close]

BLAST of Cp4.1LG03g03900 vs. NCBI nr
Match: XP_022983139.1 (outer envelope pore protein 16-3, chloroplastic/mitochondrial-like [Cucurbita maxima] >XP_023528706.1 outer envelope pore protein 16-3, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 95.9 bits (237), Expect = 5.18e-23
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 28  GKSIPTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 75
           GKSIPTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE
Sbjct: 111 GKSIPTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 158

[Close]

BLAST of Cp4.1LG03g03900 vs. NCBI nr
Match: XP_022935378.1 (outer envelope pore protein 16-3, chloroplastic/mitochondrial [Cucurbita moschata] >KAG7017569.1 Outer envelope pore protein 16-3, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.9 bits (237), Expect = 5.18e-23
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 28  GKSIPTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 75
           GKSIPTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE
Sbjct: 111 GKSIPTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 158

[Close]

BLAST of Cp4.1LG03g03900 vs. NCBI nr
Match: XP_022948275.1 (outer envelope pore protein 16-3, chloroplastic/mitochondrial-like [Cucurbita moschata] >XP_023540815.1 outer envelope pore protein 16-3, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 92.8 bits (229), Expect = 8.38e-22
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 28  GKSIPTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 75
           GKSI TAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE
Sbjct: 111 GKSISTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 158

[Close]

BLAST of Cp4.1LG03g03900 vs. NCBI nr
Match: KAG7027770.1 (Outer envelope pore protein 16-3, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 92.8 bits (229), Expect = 2.25e-21
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 28  GKSIPTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 75
           GKSI TAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE
Sbjct: 152 GKSISTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 199

[Close]

BLAST of Cp4.1LG03g03900 vs. NCBI nr
Match: XP_038906015.1 (outer envelope pore protein 16-3, chloroplastic/mitochondrial [Benincasa hispida])

HSP 1 Score: 91.7 bits (226), Expect = 2.38e-21
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 28  GKSIPTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 75
           GKSI TAISAGAALAVTSA+IDVGGQTTRIDNGKEYYPYTTKKRSHIE
Sbjct: 111 GKSISTAISAGAALAVTSAVIDVGGQTTRIDNGKEYYPYTTKKRSHIE 158

[Close]

BLAST of Cp4.1LG03g03900 vs. ExPASy TrEMBL
Match: A0A6J1J6G7 (outer envelope pore protein 16-3, chloroplastic/mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111481780 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.51e-23
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 28  GKSIPTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 75
           GKSIPTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE
Sbjct: 111 GKSIPTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 158

[Close]

BLAST of Cp4.1LG03g03900 vs. ExPASy TrEMBL
Match: A0A6J1FAE0 (outer envelope pore protein 16-3, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111442280 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.51e-23
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 28  GKSIPTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 75
           GKSIPTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE
Sbjct: 111 GKSIPTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 158

[Close]

BLAST of Cp4.1LG03g03900 vs. ExPASy TrEMBL
Match: A0A6J1G9D0 (outer envelope pore protein 16-3, chloroplastic/mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111451994 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.06e-22
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 28  GKSIPTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 75
           GKSI TAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE
Sbjct: 111 GKSISTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 158

[Close]

BLAST of Cp4.1LG03g03900 vs. ExPASy TrEMBL
Match: A0A6J1I3G7 (outer envelope pore protein 16-3, chloroplastic/mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111470193 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.63e-21
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 28  GKSIPTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 75
           GKSI TAISAG ALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE
Sbjct: 111 GKSISTAISAGVALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 158

[Close]

BLAST of Cp4.1LG03g03900 vs. ExPASy TrEMBL
Match: A0A6J1DN96 (outer envelope pore protein 16-3, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111021571 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.63e-21
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 28  GKSIPTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 75
           GKSI TAISAGAALAVTS LIDVGGQTTRIDNGKEYYPYTTKKRSHIE
Sbjct: 111 GKSISTAISAGAALAVTSTLIDVGGQTTRIDNGKEYYPYTTKKRSHIE 158

[Close]

BLAST of Cp4.1LG03g03900 vs. TAIR 10
Match: AT2G42210.1 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein )

HSP 1 Score: 75.5 bits (184), Expect = 2.1e-14
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 29  KSIPTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 76
           +SIPTAI+AGA LAVTSALID GGQTTR+DNG+EYYPYT +KR+  +
Sbjct: 112 RSIPTAIAAGATLAVTSALIDSGGQTTRVDNGREYYPYTVEKRAEAD 158

[Close]

BLAST of Cp4.1LG03g03900 vs. TAIR 10
Match: AT2G42210.2 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein )

HSP 1 Score: 75.5 bits (184), Expect = 2.1e-14
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 29  KSIPTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 76
           +SIPTAI+AGA LAVTSALID GGQTTR+DNG+EYYPYT +KR+  +
Sbjct: 126 RSIPTAIAAGATLAVTSALIDSGGQTTRVDNGREYYPYTVEKRAEAD 172

[Close]

BLAST of Cp4.1LG03g03900 vs. TAIR 10
Match: AT2G42210.3 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein )

HSP 1 Score: 75.5 bits (184), Expect = 2.1e-14
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 29  KSIPTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 76
           +SIPTAI+AGA LAVTSALID GGQTTR+DNG+EYYPYT +KR+  +
Sbjct: 112 RSIPTAIAAGATLAVTSALIDSGGQTTRVDNGREYYPYTVEKRAEAD 158

[Close]

BLAST of Cp4.1LG03g03900 vs. TAIR 10
Match: AT2G42210.4 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein )

HSP 1 Score: 75.5 bits (184), Expect = 2.1e-14
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 29  KSIPTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 76
           +SIPTAI+AGA LAVTSALID GGQTTR+DNG+EYYPYT +KR+  +
Sbjct: 112 RSIPTAIAAGATLAVTSALIDSGGQTTRVDNGREYYPYTVEKRAEAD 158

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g03900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O48528	2.9e-13	74.47	Outer envelope pore protein 16-3, chloroplastic/mitochondrial OS=Arabidopsis tha...	[more]

BLAST of Cp4.1LG03g03900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983139.1	5.18e-23	100.00	outer envelope pore protein 16-3, chloroplastic/mitochondrial-like [Cucurbita ma...	[more]
XP_022935378.1	5.18e-23	100.00	outer envelope pore protein 16-3, chloroplastic/mitochondrial [Cucurbita moschat...	[more]
XP_022948275.1	8.38e-22	97.92	outer envelope pore protein 16-3, chloroplastic/mitochondrial-like [Cucurbita mo...	[more]
KAG7027770.1	2.25e-21	97.92	Outer envelope pore protein 16-3, chloroplastic/mitochondrial, partial [Cucurbit...	[more]
XP_038906015.1	2.38e-21	95.83	outer envelope pore protein 16-3, chloroplastic/mitochondrial [Benincasa hispida...	[more]

BLAST of Cp4.1LG03g03900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J6G7	2.51e-23	100.00	outer envelope pore protein 16-3, chloroplastic/mitochondrial-like OS=Cucurbita ...	[more]
A0A6J1FAE0	2.51e-23	100.00	outer envelope pore protein 16-3, chloroplastic/mitochondrial OS=Cucurbita mosch...	[more]
A0A6J1G9D0	4.06e-22	97.92	outer envelope pore protein 16-3, chloroplastic/mitochondrial-like OS=Cucurbita ...	[more]
A0A6J1I3G7	1.63e-21	95.83	outer envelope pore protein 16-3, chloroplastic/mitochondrial-like OS=Cucurbita ...	[more]
A0A6J1DN96	1.63e-21	95.83	outer envelope pore protein 16-3, chloroplastic/mitochondrial OS=Momordica chara...	[more]

BLAST of Cp4.1LG03g03900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42210.1	2.1e-14	74.47	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family...	[more]
AT2G42210.2	2.1e-14	74.47	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family...	[more]
AT2G42210.3	2.1e-14	74.47	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family...	[more]
AT2G42210.4	2.1e-14	74.47	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039175	Mitochondrial import inner membrane translocase subunit TIM22	PANTHER	PTHR14110	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22	coord: 25..73
None	No IPR available	PANTHER	PTHR14110:SF18	OUTER ENVELOPE PORE PROTEIN 16-3, CHLOROPLASTIC/MITOCHONDRIAL	coord: 25..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g03900.1	Cp4.1LG03g03900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045039	protein insertion into mitochondrial inner membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0042721	TIM22 mitochondrial import inner membrane insertion complex