Cp4.1LG03g03540 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g03540
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	pentatricopeptide repeat-containing protein At1g09900-like
Location	Cp4.1LG03: 65816 .. 68097 (+)
RNA-Seq Expression	Cp4.1LG03g03540
Synteny	Cp4.1LG03g03540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAAAAGATAATATATACACAAGCATCCATTGGCAATATCTAGAAGAGATGGCAGTGGTTAAGAAATTTGGGGACGAACACAGCAACTTGTTGGACCAATACGAGAGACGGAGCTTTGAGGCGCGACTAAACCAAGCGATTCTGGGGCGGAGTCTTTCGGAGCCGAGGACGTTGAGGTCTCAACAGCAGCCGCAGCCGCAACTTAGTGCCTCAGGCTCAGTTCGGCTACCATGCTTGGTAACAACAAGTAGCAATCAGCCCAGAAAAGGAGGCCGTGGATCCACATTCAACTTCAACAAGATTATCAATAGGTTACTCAAACCCATTTTGGGGAGAAAGAGTAAGAGTAGGGCAAAGAAGGAACTTCCAGATTTCAGAAACCCCGTGTCTTGGAAAGCCCTCAGTAAATCCATGCGCCTTTGATCTTTTTTCAATGCTGTCAATCTGCGTCCCCTTGCTTTCCTTGTCTATTTTCTTACATCGGAACAGGATACTCCAATGTCAATCAATCAACGGATTGAGTGGTTTTCATTTGTAGTTGAAGTAATGAACATTCGGATATTATTCTGTTGTCTTTTCTTTATTAAATTATTTTAACCAACTTTCTCCTTCAAGATTTTGGGCTGTTCTTGCTATCAATGCCATGGAGCGGACTGGGCTCAAGTCAAGTCACTCGAGGCCCAAACAACTTCGTTCTCCAATCTCCCAATTTCTGGAGATACAGACCAAACCCAATTTCACCCTGCCGTGCCCTCCACCAACTTCAGCTTCCCATCCAATCGTCTCTGCAAAAACCAATCTTTCCTTCCATAGAAATCCCAACATAAACGAATGCGTCTCGCCCTTCGCCCGTCTTTCCTCACCACTCTTCCGCTCTCTTCTACAGATACGCCTTTCGGTGCCAACTTTATCGAAGAAAATGGTAGGCTTAGCGCGAATAAACGACCCCATTCCGTCTGTAATGGCGGGCTTAGTTTCAATCACCATGTTCACGCCTCACCTTTCAAACTGGGGATTCAGATTCCCACTAGAATGACCATTCAAAATGTTGCCGACACAATTAAATCACTGCCAATACCGTCGGAAGAAGGGACTGAAATTTTCATCATGTCTCAGAAAAGTTGTGAGATTCAAAACATATGTGAATTCAATGACCTGTTCATGGAATTCGTCTCAGAAGATGAGCTCGATCTTGGCCTAAAACTGTTGTCCAATTTATCATCTTACGGTTTGGTCCCAAATTGTAGAACATTTTCCATCATGATAAGGTGCTATTGCAAGAAAGGAGATTTAGATAATGCGGCTAGGGTTTTAGGCCAAATGCTGGGAAGCGGTTGTAATCCAAACGATGCAACCATCACAGTTCTCGTGAATGCTTTCTGCAAAAGGGGTAAAATGCAGAAAGCCTTTGAAATGGTCGAGCTCGTGGGAAGGAATGGACGCAAGCCAACCGTTCAGGCATACAATTGTTTGTTGAAAGGGCTATGTTACGTTGGGAGAGTGGAAGAGGCATGCGAAATGGTGACGGAAATGAAGAAGGATAGCTTGATACCTGATATTTACACGTACACGGCTGTTATGGATGGCTTGTGTAAGGTAGGCCGATCAGACGAGGCAATGGAATTGCTCAGTGAAGCTGAGCAAAATGGTGTTAAACCAAGTGTAGTTACTTTCAACACCCTCTTCAATGGCTACTGCAAGGAGGGCAGACCACTGGATGGGATCCGTGTGTTGAAGAAAATGAAGCAAATGAACTGTACGCCGGATCGCATTAGTTATAGCACTCTGCTGCAGGGGCTGATAAAATGGGGTAAAATCCGAACAGCCTTGAGGACATACAAGGAAATGGTTAGCTCAGGCCACAGCATCGAAGAAAAAATGATGAATACCTTCATGAGAGCGTTGTGCAGGAGAAGCTGGAAAGAAAAGGACCTATTGGAAGATGCCCATCAAGTGTTTGAGAAAATGAAGAACGAATTGCAAGTTGTTGATCGGAGTACATATGGCCTGCTGATCCAAGCACTCTGTTCAGGAAACAGGACTTGTGAGGCTTTGGCAAATTTGCATCATATGATTGGAAAAGGGTACTCTCCAAGGGCGATTACCATCGACGTTATGGTTCAAGCGCTTTGTCACAGCGGAGGCGCCAGTGAAGCATTGTGTGTTTTGGGGCATGGAATCCGTTTCAGCAGAATTTCCTTTGACCTGATTATCGAGGAGCTAAATGAAGAAGGAATGTGGTTTAGTGCTTGTAACGTATATGGCCTGGCTTTGAAACGA

mRNA sequence

AAAGAAAAGATAATATATACACAAGCATCCATTGGCAATATCTAGAAGAGATGGCAGTGGTTAAGAAATTTGGGGACGAACACAGCAACTTGTTGGACCAATACGAGAGACGGAGCTTTGAGGCGCGACTAAACCAAGCGATTCTGGGGCGGAGTCTTTCGGAGCCGAGGACGTTGAGGTCTCAACAGCAGCCGCAGCCGCAACTTAGTGCCTCAGGCTCAGTTCGGCTACCATGCTTGATTATCAATAGGTTACTCAAACCCATTTTGGGGAGAAAGAGTAAGAGTAGGGCAAAGAAGGAACTTCCAGATTTCAGAAACCCCGTGTCTTGGAAAGCCCTCAGAGATTTAGATAATGCGGCTAGGGTTTTAGGCCAAATGCTGGGAAGCGGTTGTAATCCAAACGATGCAACCATCACAGTTCTCGTGAATGCTTTCTGCAAAAGGGGTAAAATGCAGAAAGCCTTTGAAATGGTCGAGCTCGTGGGAAGGAATGGACGCAAGCCAACCGTTCAGGCATACAATTGTTTGTTGAAAGGGCTATGTTACGTTGGGAGAGTGGAAGAGGCATGCGAAATGGTGACGGAAATGAAGAAGGATAGCTTGATACCTGATATTTACACGTACACGGCTGTTATGGATGGCTTGTGTAAGGTAGGCCGATCAGACGAGGCAATGGAATTGCTCAGTGAAGCTGAGCAAAATGGTGTTAAACCAAGTGTAGAGAAGCTGGAAAGAAAAGGACCTATTGGAAGATGCCCATCAAGAAACAGGACTTGTGAGGCTTTGGCAAATTTGCATCATATGATTGGAAAAGGGTACTCTCCAAGGGCGATTACCATCGACGTTATGGTTCAAGCGCTTTGTCACAGCGGAGGCGCCAGTGAAGCATTGTGTGTTTTGGGGCATGGAATCCGTTTCAGCAGAATTTCCTTTGACCTGATTATCGAGGAGCTAAATGAAGAAGGAATGTGGTTTAGTGCTTGTAACGTATATGGCCTGGCTTTGAAACGA

Coding sequence (CDS)

ATGGCAGTGGTTAAGAAATTTGGGGACGAACACAGCAACTTGTTGGACCAATACGAGAGACGGAGCTTTGAGGCGCGACTAAACCAAGCGATTCTGGGGCGGAGTCTTTCGGAGCCGAGGACGTTGAGGTCTCAACAGCAGCCGCAGCCGCAACTTAGTGCCTCAGGCTCAGTTCGGCTACCATGCTTGATTATCAATAGGTTACTCAAACCCATTTTGGGGAGAAAGAGTAAGAGTAGGGCAAAGAAGGAACTTCCAGATTTCAGAAACCCCGTGTCTTGGAAAGCCCTCAGAGATTTAGATAATGCGGCTAGGGTTTTAGGCCAAATGCTGGGAAGCGGTTGTAATCCAAACGATGCAACCATCACAGTTCTCGTGAATGCTTTCTGCAAAAGGGGTAAAATGCAGAAAGCCTTTGAAATGGTCGAGCTCGTGGGAAGGAATGGACGCAAGCCAACCGTTCAGGCATACAATTGTTTGTTGAAAGGGCTATGTTACGTTGGGAGAGTGGAAGAGGCATGCGAAATGGTGACGGAAATGAAGAAGGATAGCTTGATACCTGATATTTACACGTACACGGCTGTTATGGATGGCTTGTGTAAGGTAGGCCGATCAGACGAGGCAATGGAATTGCTCAGTGAAGCTGAGCAAAATGGTGTTAAACCAAGTGTAGAGAAGCTGGAAAGAAAAGGACCTATTGGAAGATGCCCATCAAGAAACAGGACTTGTGAGGCTTTGGCAAATTTGCATCATATGATTGGAAAAGGGTACTCTCCAAGGGCGATTACCATCGACGTTATGGTTCAAGCGCTTTGTCACAGCGGAGGCGCCAGTGAAGCATTGTGTGTTTTGGGGCATGGAATCCGTTTCAGCAGAATTTCCTTTGACCTGATTATCGAGGAGCTAAATGAAGAAGGAATGTGGTTTAGTGCTTGTAACGTATATGGCCTGGCTTTGAAACGA

Protein sequence

MAVVKKFGDEHSNLLDQYERRSFEARLNQAILGRSLSEPRTLRSQQQPQPQLSASGSVRLPCLIINRLLKPILGRKSKSRAKKELPDFRNPVSWKALRDLDNAARVLGQMLGSGCNPNDATITVLVNAFCKRGKMQKAFEMVELVGRNGRKPTVQAYNCLLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTAVMDGLCKVGRSDEAMELLSEAEQNGVKPSVEKLERKGPIGRCPSRNRTCEALANLHHMIGKGYSPRAITIDVMVQALCHSGGASEALCVLGHGIRFSRISFDLIIEELNEEGMWFSACNVYGLALKR

Homology

[Close]

BLAST of Cp4.1LG03g03540 vs. ExPASy Swiss-Prot
Match: Q9SFV9 (Pentatricopeptide repeat-containing protein At3g07290, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g07290 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.5e-26
Identity = 74/226 (32.74%), Postives = 112/226 (49.56%), Query Frame = 0


Query: 100 LDNAARVLGQMLGSGCNPNDATITVLVNAFCKRGKMQKAFEMVELVGRNGRKPTVQAYNC 159
           L+ A  +  QM   GC P+  T TVL+ A C RG + KAF + + +   G KP V  Y  
Sbjct: 282 LEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTV 341

Query: 160 LLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTAVMDGLCKVGRSDEAMELLSEAEQNG 219
           L+ GLC  G++EEA  +  +M KD + P + TY A+++G CK GR   A ELL+  E+  
Sbjct: 342 LIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRA 401

Query: 220 VKPSVEKLERKGPIGRCPSRNRTCEALANLHHMIGKGYSPRAITIDVMVQALCHSGGASE 279
            KP+V         G C    +  +A+  L  M+  G SP  ++ +V++  LC  G  + 
Sbjct: 402 CKPNVRTFNELME-GLC-RVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNT 461

Query: 280 ALCVLG----HGIRFSRISFDLIIEELNEEGMWFSACNVYGLALKR 322
           A  +L       I    ++F  II    ++G    A    GL L++
Sbjct: 462 AYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRK 505

[Close]

BLAST of Cp4.1LG03g03540 vs. ExPASy Swiss-Prot
Match: Q9LFF1 (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MEE40 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.5e-23
Identity = 63/221 (28.51%), Postives = 111/221 (50.23%), Query Frame = 0


Query: 99  DLDNAARVLGQMLGSGCNPNDATITVLVNAFCKRGKMQKAFEMV-ELVGRNGRKPTVQAY 158
           DLD A R+  QM+  GC+ ++ ++ V+V+ FCK G+++ A   + E+  ++G  P    +
Sbjct: 239 DLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTF 298

Query: 159 NCLLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTAVMDGLCKVGRSDEAMELLSEAEQ 218
           N L+ GLC  G V+ A E++  M ++   PD+YTY +V+ GLCK+G   EA+E+L +   
Sbjct: 299 NTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMIT 358

Query: 219 NGVKPSVEKLERKGPIGRCPSRNRTCEALANLHHMIGKGYSPRAITIDVMVQALCHSGGA 278
               P+   +     I      N+  EA      +  KG  P   T + ++Q LC +   
Sbjct: 359 RDCSPNT--VTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNH 418

Query: 279 SEALCVL----GHGIRFSRISFDLIIEELNEEGMWFSACNV 315
             A+ +       G      +++++I+ L  +G    A N+
Sbjct: 419 RVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNM 457

[Close]

BLAST of Cp4.1LG03g03540 vs. ExPASy Swiss-Prot
Match: Q9FMF6 (Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g64320 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.7e-22
Identity = 64/209 (30.62%), Postives = 103/209 (49.28%), Query Frame = 0


Query: 103 AARVLGQMLGSGCNPNDATITVLVNAFCKRGKMQKAFEMVELVGRNGRKPTVQAYNCLLK 162
           A  VL  M   GC PN  + T+LV+ FCK GK+ +A+ ++  +  +G KP    +NCL+ 
Sbjct: 408 ALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLIS 467

Query: 163 GLCYVGRVEEACEMVTEMKKDSLIPDIYTYTAVMDGLCKVGRSDEAMELLSEAEQNGVKP 222
             C   R+ EA E+  EM +    PD+YT+ +++ GLC+V     A+ LL +    GV  
Sbjct: 468 AFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVA 527

Query: 223 SVEKLERKGPIGRCPSRNRTCEALANLHHMIGKGYSPRAITIDVMVQALCHSGGASEALC 282
           +   +     I     R    EA   ++ M+ +G     IT + +++ LC +G   +A  
Sbjct: 528 NT--VTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARS 587

Query: 283 ----VLGHGIRFSRISFDLIIEELNEEGM 308
               +L  G   S IS +++I  L   GM
Sbjct: 588 LFEKMLRDGHAPSNISCNILINGLCRSGM 614

[Close]

BLAST of Cp4.1LG03g03540 vs. ExPASy Swiss-Prot
Match: Q0WVK7 (Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g05670 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.6e-22
Identity = 57/173 (32.95%), Postives = 91/173 (52.60%), Query Frame = 0


Query: 100 LDNAARVLGQMLGSGCNPNDATITVLVNAFCKRGKMQKAFEMVELVGRNGRKPTVQAYNC 159
           + +A RV   M+ +GC+PN  T T L++  CK G +  A E++  + + G +P +  YN 
Sbjct: 437 MKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNS 496

Query: 160 LLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTAVMDGLCKVGRSDEAMELLSEAEQNG 219
           ++ GLC  G +EEA ++V E +   L  D  TYT +MD  CK G  D+A E+L E    G
Sbjct: 497 IVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKG 556

Query: 220 VKPSVEKLERKGPIGRCPSRNRTCEALANLHHMIGKGYSPRAITIDVMVQALC 273
           ++P++         G C       +    L+ M+ KG +P A T + +V+  C
Sbjct: 557 LQPTIVTFNVL-MNGFC-LHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYC 607

[Close]

BLAST of Cp4.1LG03g03540 vs. ExPASy Swiss-Prot
Match: Q9ZVX5 (Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana OX=3702 GN=At2g16880 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-21
Identity = 71/236 (30.08%), Postives = 119/236 (50.42%), Query Frame = 0


Query: 100 LDNAARVLGQMLGSGCNPNDATITVLVNAFCKRGKMQKAFEMVELVGRNGRKPTVQAYNC 159
           L +   +L  M  +G  PN  T   LV  +CK G +++AF++VEL+ +    P +  YN 
Sbjct: 256 LSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNI 315

Query: 160 LLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTAVMDGLCKVGRSDEAMELLSEAEQNG 219
           L+ GLC  G + E  E++  MK   L PD+ TY  ++DG  ++G S EA +L+ + E +G
Sbjct: 316 LINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDG 375

Query: 220 VKPS----------VEKLERKGPIGRCPSRNRTCEALANLHHMIGKGYSPRAITIDVMVQ 279
           VK +          + K E++  +       R  + L ++H     G+SP  +T   +++
Sbjct: 376 VKANQVTHNISLKWLCKEEKREAV------TRKVKELVDMH-----GFSPDIVTYHTLIK 435

Query: 280 ALCHSG---GASEALCVLGH-GIRFSRISFDLIIEELNEEGMWFSACNVYGLALKR 322
           A    G   GA E +  +G  GI+ + I+ + I++ L +E     A N+   A KR
Sbjct: 436 AYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKR 480

[Close]

BLAST of Cp4.1LG03g03540 vs. NCBI nr
Match: XP_023528121.1 (pentatricopeptide repeat-containing protein At5g39710-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 380 bits (975), Expect = 3.65e-126
Identity = 211/331 (63.75%), Postives = 214/331 (64.65%), Query Frame = 0


Query: 99  DLDNAARVLGQMLGSGCNPNDATITVLVNAFCKRGKMQKAFEMVELVGRNGRKPTVQAYN 158
           DLDNAARVLGQMLGSGCNPNDATITVLVNAFCKRGKMQKAFEMVELVGRNGRKPTVQAYN
Sbjct: 153 DLDNAARVLGQMLGSGCNPNDATITVLVNAFCKRGKMQKAFEMVELVGRNGRKPTVQAYN 212

Query: 159 CLLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTAVMDGLCKVGRSDEAMELLSEAEQN 218
           CLLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTAVMDGLCKVGRSDEAMELLSEAEQN
Sbjct: 213 CLLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTAVMDGLCKVGRSDEAMELLSEAEQN 272

Query: 219 GVKPSV--------------------EKLERKGPIGRCPSR------------------- 278
           GVKPSV                      L++   +   P R                   
Sbjct: 273 GVKPSVVTFNTLFNGYCKEGRPLDGIRVLKKMKQMNCTPDRISYSTLLQGLIKWGKIRTA 332

Query: 279 ------------------------------------------------------------ 321
                                                                       
Sbjct: 333 LRTYKEMVSSGHSIEEKMMNTFMRALCRRSWKEKDLLEDAHQVFEKMKNELQVVDRSTYG 392

[Close]

BLAST of Cp4.1LG03g03540 vs. NCBI nr
Match: KAG7017186.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 375 bits (962), Expect = 3.37e-124
Identity = 209/331 (63.14%), Postives = 213/331 (64.35%), Query Frame = 0


Query: 99  DLDNAARVLGQMLGSGCNPNDATITVLVNAFCKRGKMQKAFEMVELVGRNGRKPTVQAYN 158
           DLDNAARVLGQMLGSGCNPNDATITVLVNAFCKRGKMQKAFEMVELVGRNGRKPTVQAYN
Sbjct: 153 DLDNAARVLGQMLGSGCNPNDATITVLVNAFCKRGKMQKAFEMVELVGRNGRKPTVQAYN 212

Query: 159 CLLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTAVMDGLCKVGRSDEAMELLSEAEQN 218
           CLLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTA+MDGLCKVGRSDEAMELLSEAEQN
Sbjct: 213 CLLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTALMDGLCKVGRSDEAMELLSEAEQN 272

Query: 219 GVKPSV--------------------EKLERKGPIGRCPSR------------------- 278
           GVKPSV                      L++   +   P R                   
Sbjct: 273 GVKPSVVTFNTLFNGYCKEGRPLDGIRVLKKMKQMNCTPDRISYSTLLQGLIKWGKIRTA 332

Query: 279 ------------------------------------------------------------ 321
                                                                       
Sbjct: 333 LRTYKEMVSSGHSIEEKMMNTFMRALCRRSWKEKDLLEDAHQVFEKMKNELQVIDRSTYG 392

[Close]

BLAST of Cp4.1LG03g03540 vs. NCBI nr
Match: KAG6580429.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 369 bits (947), Expect = 6.23e-122
Identity = 206/331 (62.24%), Postives = 211/331 (63.75%), Query Frame = 0


Query: 99  DLDNAARVLGQMLGSGCNPNDATITVLVNAFCKRGKMQKAFEMVELVGRNGRKPTVQAYN 158
           DL+NAARVLGQMLG GCNPNDATITVLVNAFCKRGKMQKA EMVELVGRNGRKPTVQAYN
Sbjct: 153 DLENAARVLGQMLGRGCNPNDATITVLVNAFCKRGKMQKALEMVELVGRNGRKPTVQAYN 212

Query: 159 CLLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTAVMDGLCKVGRSDEAMELLSEAEQN 218
           CLLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTA+MDGLCKVGRSDEAMELLSEAEQN
Sbjct: 213 CLLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTALMDGLCKVGRSDEAMELLSEAEQN 272

Query: 219 GVKPSV--------------------EKLERKGPIGRCPSR------------------- 278
           GVKPSV                      L++   +   P R                   
Sbjct: 273 GVKPSVVTFNTLFNGYCKEGRPLDGIRVLKKMKQMNCTPDRISYSTLLQGLIKWGKIRTA 332

Query: 279 ------------------------------------------------------------ 321
                                                                       
Sbjct: 333 LRTYKEMVSSGHSIEEKMMNTFMRALCRRTWKEKDLLEDAHQVFEKMKNELQVIDRSTYG 392

[Close]

BLAST of Cp4.1LG03g03540 vs. NCBI nr
Match: XP_022935128.1 (pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita moschata])

HSP 1 Score: 369 bits (946), Expect = 8.82e-122
Identity = 205/331 (61.93%), Postives = 211/331 (63.75%), Query Frame = 0


Query: 99  DLDNAARVLGQMLGSGCNPNDATITVLVNAFCKRGKMQKAFEMVELVGRNGRKPTVQAYN 158
           DL+NAARVLGQMLG GCNPNDATITVLVNAFCKRGKMQKA EMVELVGRNGRKPTVQAYN
Sbjct: 153 DLENAARVLGQMLGRGCNPNDATITVLVNAFCKRGKMQKALEMVELVGRNGRKPTVQAYN 212

Query: 159 CLLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTAVMDGLCKVGRSDEAMELLSEAEQN 218
           CLLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTA+MDGLCKVGRSDEAMELLSEAEQN
Sbjct: 213 CLLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTALMDGLCKVGRSDEAMELLSEAEQN 272

Query: 219 GVKPSV--------------------EKLERKGPIGRCPSR------------------- 278
           GVKPSV                      L++   +   P R                   
Sbjct: 273 GVKPSVVTFNTLFNGYCKEGRPLDGIRVLKKMKQMNCTPDRISYSTLLQGLIKWGKIRTA 332

Query: 279 ------------------------------------------------------------ 321
                                                                       
Sbjct: 333 LRTYKEMVSSGHSIEEKMMNTFMRALCRRTWKEKDLLEDAHQVFEKMKNELQVIDRSTYG 392

[Close]

BLAST of Cp4.1LG03g03540 vs. NCBI nr
Match: XP_022982589.1 (pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 358 bits (919), Expect = 1.06e-117
Identity = 202/331 (61.03%), Postives = 207/331 (62.54%), Query Frame = 0


Query: 99  DLDNAARVLGQMLGSGCNPNDATITVLVNAFCKRGKMQKAFEMVELVGRNGRKPTVQAYN 158
           DLDNAARVLGQMLG GCNPNDATITVLVNAFCKRGKMQKA EMVELVGRNGRKPTVQAYN
Sbjct: 153 DLDNAARVLGQMLGRGCNPNDATITVLVNAFCKRGKMQKALEMVELVGRNGRKPTVQAYN 212

Query: 159 CLLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTAVMDGLCKVGRSDEAMELLSEAEQN 218
           CLLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTA+MDGLCKVGRSDEAMELLSEAE N
Sbjct: 213 CLLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTALMDGLCKVGRSDEAMELLSEAEGN 272

Query: 219 GVKPSV--------------------EKLERKGPIGRCPSR------------------- 278
           GVKPSV                      L++   +   P R                   
Sbjct: 273 GVKPSVVTFNTLFNGYCKEGRPLDGIRVLKKMKQMNCTPDRISYSTLLHGLIKWGKIRTA 332

Query: 279 ------------------------------------------------------------ 321
                                                                       
Sbjct: 333 LRTYKEMVSSGHSIEEKMMNTFMRALCRRTWKEKDLLEDAHQVFEKMKNEFQVIDRSTYG 392

[Close]

BLAST of Cp4.1LG03g03540 vs. ExPASy TrEMBL
Match: A0A6J1F9P1 (pentatricopeptide repeat-containing protein At1g09900-like OS=Cucurbita moschata OX=3662 GN=LOC111442091 PE=4 SV=1)

HSP 1 Score: 369 bits (946), Expect = 4.27e-122
Identity = 205/331 (61.93%), Postives = 211/331 (63.75%), Query Frame = 0


Query: 99  DLDNAARVLGQMLGSGCNPNDATITVLVNAFCKRGKMQKAFEMVELVGRNGRKPTVQAYN 158
           DL+NAARVLGQMLG GCNPNDATITVLVNAFCKRGKMQKA EMVELVGRNGRKPTVQAYN
Sbjct: 153 DLENAARVLGQMLGRGCNPNDATITVLVNAFCKRGKMQKALEMVELVGRNGRKPTVQAYN 212

Query: 159 CLLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTAVMDGLCKVGRSDEAMELLSEAEQN 218
           CLLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTA+MDGLCKVGRSDEAMELLSEAEQN
Sbjct: 213 CLLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTALMDGLCKVGRSDEAMELLSEAEQN 272

Query: 219 GVKPSV--------------------EKLERKGPIGRCPSR------------------- 278
           GVKPSV                      L++   +   P R                   
Sbjct: 273 GVKPSVVTFNTLFNGYCKEGRPLDGIRVLKKMKQMNCTPDRISYSTLLQGLIKWGKIRTA 332

Query: 279 ------------------------------------------------------------ 321
                                                                       
Sbjct: 333 LRTYKEMVSSGHSIEEKMMNTFMRALCRRTWKEKDLLEDAHQVFEKMKNELQVIDRSTYG 392

[Close]

BLAST of Cp4.1LG03g03540 vs. ExPASy TrEMBL
Match: A0A6J1J506 (pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111481420 PE=4 SV=1)

HSP 1 Score: 358 bits (919), Expect = 5.11e-118
Identity = 202/331 (61.03%), Postives = 207/331 (62.54%), Query Frame = 0


Query: 99  DLDNAARVLGQMLGSGCNPNDATITVLVNAFCKRGKMQKAFEMVELVGRNGRKPTVQAYN 158
           DLDNAARVLGQMLG GCNPNDATITVLVNAFCKRGKMQKA EMVELVGRNGRKPTVQAYN
Sbjct: 153 DLDNAARVLGQMLGRGCNPNDATITVLVNAFCKRGKMQKALEMVELVGRNGRKPTVQAYN 212

Query: 159 CLLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTAVMDGLCKVGRSDEAMELLSEAEQN 218
           CLLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTA+MDGLCKVGRSDEAMELLSEAE N
Sbjct: 213 CLLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTALMDGLCKVGRSDEAMELLSEAEGN 272

Query: 219 GVKPSV--------------------EKLERKGPIGRCPSR------------------- 278
           GVKPSV                      L++   +   P R                   
Sbjct: 273 GVKPSVVTFNTLFNGYCKEGRPLDGIRVLKKMKQMNCTPDRISYSTLLHGLIKWGKIRTA 332

Query: 279 ------------------------------------------------------------ 321
                                                                       
Sbjct: 333 LRTYKEMVSSGHSIEEKMMNTFMRALCRRTWKEKDLLEDAHQVFEKMKNEFQVIDRSTYG 392

[Close]

BLAST of Cp4.1LG03g03540 vs. ExPASy TrEMBL
Match: A0A6J1DW66 (pentatricopeptide repeat-containing protein At1g09900-like OS=Momordica charantia OX=3673 GN=LOC111024057 PE=4 SV=1)

HSP 1 Score: 287 bits (734), Expect = 7.62e-90
Identity = 164/340 (48.24%), Postives = 192/340 (56.47%), Query Frame = 0


Query: 99  DLDNAARVLGQMLGSGCNPNDATITVLVNAFCKRGKMQKAFEMVELVGRNGRKPTVQAYN 158
           DLDNA RV  QMLGSGCNPNDAT+TVLVNA C+RGK+++A EMVELVGR GRK TV+ YN
Sbjct: 146 DLDNAKRVFDQMLGSGCNPNDATVTVLVNALCRRGKIKRALEMVELVGRIGRKQTVRTYN 205

Query: 159 CLLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTAVMDGLCKVGRSDEAMELLSEAEQN 218
           CLLKGLCYVGRVEEACEMV +MKKD L+PDIYTYTA+MDGLCKVGRSDEAMELL+EAE+N
Sbjct: 206 CLLKGLCYVGRVEEACEMVAKMKKDGLVPDIYTYTALMDGLCKVGRSDEAMELLNEAEEN 265

Query: 219 GVKPSV--------------------EKLERKGPIGRCPSR------------------- 278
           G++PSV                      L++   +   P R                   
Sbjct: 266 GLEPSVVTFNTLFNGYCKEGRPLDGIHVLKKMKQMNCMPDRISYTTLLHGLIKWGKIRTA 325

Query: 279 ------------------------------------------------------------ 321
                                                                       
Sbjct: 326 LRTYKEMVSSGHSVEEKMMNTFMRALCRRSWKEKDLLEDAHQVFEKMKNEFQVIHRSTYG 385

[Close]

BLAST of Cp4.1LG03g03540 vs. ExPASy TrEMBL
Match: A0A1R3KN51 (PPR_long domain-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_06481 PE=3 SV=1)

HSP 1 Score: 218 bits (554), Expect = 5.40e-62
Identity = 180/569 (31.63%), Postives = 232/569 (40.77%), Query Frame = 0


Query: 2   AVVKKFGDEHSNLLDQYERRSFEARLNQAILGRSLSEP----RTLRSQQQ--------PQ 61
            V++KFGDE S LLDQ+ER SFE +LNQAILGRSLSEP    +TLRS  Q        P 
Sbjct: 65  VVLRKFGDEQSTLLDQFERLSFEVQLNQAILGRSLSEPSVAKKTLRSHFQAPPPQQAVPA 124

Query: 62  PQLSASGSVRLPCL--IINRLLKPILGRKSKSRAKKEL---------------------- 121
           PQ++  G         ++ +LLKPILGRK  + A+ +L                      
Sbjct: 125 PQVARKGRRHGSGFNKVLKKLLKPILGRKGCAAAETKLVAEPQNPLFLPLKTPTLTAPSR 184

Query: 122 ------------------------------------------------------------ 181
                                                                       
Sbjct: 185 SLIPADRSSIDSIKEGKLESLNLEGKTGRFQFEDFLEKVKAIPFKDSSEILSIIQKEAGT 244

Query: 182 ------------------PD-----FRN---------PVSWK---------ALRDLDNAA 241
                             PD     F N         P  W             DLD A 
Sbjct: 245 WTLSDFNGLLMALVTADEPDLALELFANVASCGLTLAPNCWTFSIMIRCYCKKNDLDEAQ 304

Query: 242 RVLGQMLGSGCNPNDATITVLVNAFCKRGKMQKAFEMVELVGRNGRKPTVQAYNCLLKGL 301
           RVL  M+ +G +PN  T T+L+N  CKRGK+QKAF++ E++GR G KP VQ YNCLLKGL
Sbjct: 305 RVLQDMMANGYSPNVITFTILINFLCKRGKLQKAFQVFEMMGRVGCKPNVQTYNCLLKGL 364

Query: 302 CYVGRVEEACEMVTEMKKDSLIPDIYTYTAVMDGLCKVGRSDEAMELLSEAEQNGVKPSV 321
           CYVGRVEEA EM+  +K++S+IPDIY+YTAVMDG CKVGRSDEAMELL++A + G++P+ 
Sbjct: 365 CYVGRVEEANEMLMNLKEESIIPDIYSYTAVMDGFCKVGRSDEAMELLNQALEMGLEPNA 424

[Close]

BLAST of Cp4.1LG03g03540 vs. ExPASy TrEMBL
Match: A0A200R3P0 (Pentatricopeptide repeat OS=Macleaya cordata OX=56857 GN=BVC80_1837g86 PE=3 SV=1)

HSP 1 Score: 206 bits (523), Expect = 2.16e-59
Identity = 130/335 (38.81%), Postives = 162/335 (48.36%), Query Frame = 0


Query: 99  DLDNAARVLGQMLGSGCNPNDATITVLVNAFCKRGKMQKAFEMVELVGRNGRKPTVQAYN 158
           + + A RVL QM+G+G +PN  T T+L+N+FC+RGK+QKAFE+ E++G+ G +PTVQ YN
Sbjct: 81  EAEEAKRVLDQMVGNGFHPNVVTFTILINSFCRRGKLQKAFEVFEVMGQIGCEPTVQTYN 140

Query: 159 CLLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTAVMDGLCKVGRSDEAMELLSEAEQN 218
           CL+ GLCYVGRVEEA E++ ++KK    PDIYTYTAVMDG CKVGRSDEAMELL EA   
Sbjct: 141 CLINGLCYVGRVEEAFELLMKIKKSPKKPDIYTYTAVMDGFCKVGRSDEAMELLEEALVE 200

Query: 219 GVKPSV------------------------------------------------------ 278
           G+KP+V                                                      
Sbjct: 201 GLKPTVVTFNTLFNGYCKEGRPLEGINLLNQMKAKNCQPDYISYNTLLHGLLKWNEVPAA 260

Query: 279 ---------------------------------EKL--------ERKGPIGRCPSRNRTC 321
                                            EKL        ER   +G  P  N  C
Sbjct: 261 LQVYKEMLEIGLEVNERMINTLLRVICRRSWTNEKLLKDVEEVFERIKKLGLIPYPNTYC 320

[Close]

BLAST of Cp4.1LG03g03540 vs. TAIR 10
Match: AT3G07290.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 119.4 bits (298), Expect = 5.3e-27
Identity = 74/226 (32.74%), Postives = 112/226 (49.56%), Query Frame = 0


Query: 100 LDNAARVLGQMLGSGCNPNDATITVLVNAFCKRGKMQKAFEMVELVGRNGRKPTVQAYNC 159
           L+ A  +  QM   GC P+  T TVL+ A C RG + KAF + + +   G KP V  Y  
Sbjct: 282 LEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTV 341

Query: 160 LLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTAVMDGLCKVGRSDEAMELLSEAEQNG 219
           L+ GLC  G++EEA  +  +M KD + P + TY A+++G CK GR   A ELL+  E+  
Sbjct: 342 LIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRA 401

Query: 220 VKPSVEKLERKGPIGRCPSRNRTCEALANLHHMIGKGYSPRAITIDVMVQALCHSGGASE 279
            KP+V         G C    +  +A+  L  M+  G SP  ++ +V++  LC  G  + 
Sbjct: 402 CKPNVRTFNELME-GLC-RVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNT 461

Query: 280 ALCVLG----HGIRFSRISFDLIIEELNEEGMWFSACNVYGLALKR 322
           A  +L       I    ++F  II    ++G    A    GL L++
Sbjct: 462 AYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRK 505

[Close]

BLAST of Cp4.1LG03g03540 vs. TAIR 10
Match: AT3G53700.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 110.5 bits (275), Expect = 2.5e-24
Identity = 63/221 (28.51%), Postives = 111/221 (50.23%), Query Frame = 0


Query: 99  DLDNAARVLGQMLGSGCNPNDATITVLVNAFCKRGKMQKAFEMV-ELVGRNGRKPTVQAY 158
           DLD A R+  QM+  GC+ ++ ++ V+V+ FCK G+++ A   + E+  ++G  P    +
Sbjct: 239 DLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTF 298

Query: 159 NCLLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTAVMDGLCKVGRSDEAMELLSEAEQ 218
           N L+ GLC  G V+ A E++  M ++   PD+YTY +V+ GLCK+G   EA+E+L +   
Sbjct: 299 NTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMIT 358

Query: 219 NGVKPSVEKLERKGPIGRCPSRNRTCEALANLHHMIGKGYSPRAITIDVMVQALCHSGGA 278
               P+   +     I      N+  EA      +  KG  P   T + ++Q LC +   
Sbjct: 359 RDCSPNT--VTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNH 418

Query: 279 SEALCVL----GHGIRFSRISFDLIIEELNEEGMWFSACNV 315
             A+ +       G      +++++I+ L  +G    A N+
Sbjct: 419 RVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNM 457

[Close]

BLAST of Cp4.1LG03g03540 vs. TAIR 10
Match: AT5G64320.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 108.2 bits (269), Expect = 1.2e-23
Identity = 64/209 (30.62%), Postives = 103/209 (49.28%), Query Frame = 0


Query: 103 AARVLGQMLGSGCNPNDATITVLVNAFCKRGKMQKAFEMVELVGRNGRKPTVQAYNCLLK 162
           A  VL  M   GC PN  + T+LV+ FCK GK+ +A+ ++  +  +G KP    +NCL+ 
Sbjct: 408 ALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLIS 467

Query: 163 GLCYVGRVEEACEMVTEMKKDSLIPDIYTYTAVMDGLCKVGRSDEAMELLSEAEQNGVKP 222
             C   R+ EA E+  EM +    PD+YT+ +++ GLC+V     A+ LL +    GV  
Sbjct: 468 AFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVA 527

Query: 223 SVEKLERKGPIGRCPSRNRTCEALANLHHMIGKGYSPRAITIDVMVQALCHSGGASEALC 282
           +   +     I     R    EA   ++ M+ +G     IT + +++ LC +G   +A  
Sbjct: 528 NT--VTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARS 587

Query: 283 ----VLGHGIRFSRISFDLIIEELNEEGM 308
               +L  G   S IS +++I  L   GM
Sbjct: 588 LFEKMLRDGHAPSNISCNILINGLCRSGM 614

[Close]

BLAST of Cp4.1LG03g03540 vs. TAIR 10
Match: AT1G05670.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 105.9 bits (263), Expect = 6.1e-23
Identity = 57/173 (32.95%), Postives = 91/173 (52.60%), Query Frame = 0


Query: 100 LDNAARVLGQMLGSGCNPNDATITVLVNAFCKRGKMQKAFEMVELVGRNGRKPTVQAYNC 159
           + +A RV   M+ +GC+PN  T T L++  CK G +  A E++  + + G +P +  YN 
Sbjct: 437 MKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNS 496

Query: 160 LLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTAVMDGLCKVGRSDEAMELLSEAEQNG 219
           ++ GLC  G +EEA ++V E +   L  D  TYT +MD  CK G  D+A E+L E    G
Sbjct: 497 IVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKG 556

Query: 220 VKPSVEKLERKGPIGRCPSRNRTCEALANLHHMIGKGYSPRAITIDVMVQALC 273
           ++P++         G C       +    L+ M+ KG +P A T + +V+  C
Sbjct: 557 LQPTIVTFNVL-MNGFC-LHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYC 607

[Close]

BLAST of Cp4.1LG03g03540 vs. TAIR 10
Match: AT1G05670.2 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 105.9 bits (263), Expect = 6.1e-23
Identity = 57/173 (32.95%), Postives = 91/173 (52.60%), Query Frame = 0


Query: 100 LDNAARVLGQMLGSGCNPNDATITVLVNAFCKRGKMQKAFEMVELVGRNGRKPTVQAYNC 159
           + +A RV   M+ +GC+PN  T T L++  CK G +  A E++  + + G +P +  YN 
Sbjct: 437 MKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNS 496

Query: 160 LLKGLCYVGRVEEACEMVTEMKKDSLIPDIYTYTAVMDGLCKVGRSDEAMELLSEAEQNG 219
           ++ GLC  G +EEA ++V E +   L  D  TYT +MD  CK G  D+A E+L E    G
Sbjct: 497 IVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKG 556

Query: 220 VKPSVEKLERKGPIGRCPSRNRTCEALANLHHMIGKGYSPRAITIDVMVQALC 273
           ++P++         G C       +    L+ M+ KG +P A T + +V+  C
Sbjct: 557 LQPTIVTFNVL-MNGFC-LHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYC 607

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g03540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SFV9	7.5e-26	32.74	Pentatricopeptide repeat-containing protein At3g07290, mitochondrial OS=Arabidop...	[more]
Q9LFF1	3.5e-23	28.51	Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidop...	[more]
Q9FMF6	1.7e-22	30.62	Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidop...	[more]
Q0WVK7	8.6e-22	32.95	Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidop...	[more]
Q9ZVX5	1.1e-21	30.08	Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana OX...	[more]

BLAST of Cp4.1LG03g03540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023528121.1	3.65e-126	63.75	pentatricopeptide repeat-containing protein At5g39710-like [Cucurbita pepo subsp...	[more]
KAG7017186.1	3.37e-124	63.14	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
KAG6580429.1	6.23e-122	62.24	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_022935128.1	8.82e-122	61.93	pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita moschata]	[more]
XP_022982589.1	1.06e-117	61.03	pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like [Cucur...	[more]

BLAST of Cp4.1LG03g03540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F9P1	4.27e-122	61.93	pentatricopeptide repeat-containing protein At1g09900-like OS=Cucurbita moschata...	[more]
A0A6J1J506	5.11e-118	61.03	pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like OS=Cuc...	[more]
A0A6J1DW66	7.62e-90	48.24	pentatricopeptide repeat-containing protein At1g09900-like OS=Momordica charanti...	[more]
A0A1R3KN51	5.40e-62	31.63	PPR_long domain-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_0648...	[more]
A0A200R3P0	2.16e-59	38.81	Pentatricopeptide repeat OS=Macleaya cordata OX=56857 GN=BVC80_1837g86 PE=3 SV=1	[more]

BLAST of Cp4.1LG03g03540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07290.1	5.3e-27	32.74	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G53700.1	2.5e-24	28.51	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G64320.1	1.2e-23	30.62	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G05670.1	6.1e-23	32.95	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G05670.2	6.1e-23	32.95	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 152..201 e-value: 1.8E-16 score: 60.1
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 121..153 e-value: 1.4E-4 score: 19.8 coord: 190..224 e-value: 8.3E-9 score: 33.1 coord: 156..189 e-value: 3.0E-8 score: 31.3
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 114..143 e-value: 1.8E-6 score: 27.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 188..222 score: 13.416689
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 153..187 score: 11.454616
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 118..152 score: 10.05157
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 51..231 e-value: 1.5E-36 score: 128.4
None	No IPR available	PANTHER	PTHR47942:SF36	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 240..321 coord: 98..224
None	No IPR available	PANTHER	PTHR47942	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 98..224
None	No IPR available	PANTHER	PTHR47942	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 240..321

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g03540.1	Cp4.1LG03g03540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding