Cp4.1LG03g01990 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG03g01990
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG03: 834531 .. 835486 (+)
RNA-Seq ExpressionCp4.1LG03g01990
SyntenyCp4.1LG03g01990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTTCCCTCTTCTGCAGAGTTTTAATTCCTTTACCCTTTCTTCCGCTCGTTTGCAGTTCGAAACCGCAAGGATTTAGGTATTTCCCTCCACCGAGGACGTTGTTCTTCCATTTGTTTGGAAGTCCCGGCTTTTCTTCTTCTTCTGCTGCTGCTCCAGAAATTGTCTTTGGATAATGTCTCTGTTTCTAAATTTCAATTTATTGGACATTTTTTTCGCCTGAATATCGGCATGACCGATGAATTTTTTCATTTGTTCGGTTGTGCGGCTTGAAGTCTATCTGTTATCATGGAATGATATGGCGACGGGAACTCCAAAATCTCCTATTGAGGTACGCTTTTTGGACTCTGAATATTGTTTTTGCATTTGGGATTCAAAGGAATTTTCGTAGTGTGTGAATATTTGTGATGGTTCTGTATTTTTATCGATATTGCAATGTTGTACGCAAGGTGTTTGAAGAATGTCCGCTTAGAGATATAGCTTGCATGTTTCGACGGGAACGGTGACACTCTAATATAGTTGGTTTTCAGAACTGGAGCTGTACACATTTGGCGCACAAGGTATTTTCTAATGTGGAACCGGTAAGTTCTGGTTTGACTTCCCAGATTTGAATGGCTGATCTAGGCACTGCCTCATCTGTTCAATTTCTTCCACCCCATTTGTTTCTGGTTATTTCCTATGCCATCAGTCTCTAAGTCGTACAGGAGATAGTAGTTTAGATCAAACATGGTTGAAATCTCCATGTGGAAGTTGACTCTTGCAGTTGCAGGGGATGGATAGATTGAAAAGCTGTGAAGTTTTCTCTCTCTTTATTTATGCACCATTCATTTGTGAATCTCATGCTGTTCACTGCAGAATGGCTTTTATAAGAACCTTACATTCTATATATTTTGTAACTTATTCATCAGAAGCTATTGTTTTCTTCAACCCTTGTAGTCCAGCTAACTCAATAA

mRNA sequence

ATGGATTCGAAACCGCAAGGATTTAGGTATTTCCCTCCACCGAGGACGTTGTTCTTCCATTTGTTTGGAAGTCCCGGCTTTTCTTCTTCTTCTGCTGCTGCTCCAGAAATTAACTGGAGCTGTACACATTTGGCGCACAAGGTATTTTCTAATGTGGAACCGAAGCTATTGTTTTCTTCAACCCTTGTAGTCCAGCTAACTCAATAA

Coding sequence (CDS)

ATGGATTCGAAACCGCAAGGATTTAGGTATTTCCCTCCACCGAGGACGTTGTTCTTCCATTTGTTTGGAAGTCCCGGCTTTTCTTCTTCTTCTGCTGCTGCTCCAGAAATTAACTGGAGCTGTACACATTTGGCGCACAAGGTATTTTCTAATGTGGAACCGAAGCTATTGTTTTCTTCAACCCTTGTAGTCCAGCTAACTCAATAA

Protein sequence

MDSKPQGFRYFPPPRTLFFHLFGSPGFSSSSAAAPEINWSCTHLAHKVFSNVEPKLLFSSTLVVQLTQ
Homology
[Close]
BLAST of Cp4.1LG03g01990 vs. NCBI nr
Match: KAG6580592.1 (hypothetical protein SDJN03_20594, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.7 bits (182), Expect = 1.86e-15
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 3  SKPQGFRYFPPPRTLFFHLFGSPGFSSSSAAAPEINWSCTH 43
          SKPQGFRYFPPPRTLFFHLFGSPGFSSSSAAA E++  C H
Sbjct: 29 SKPQGFRYFPPPRTLFFHLFGSPGFSSSSAAARELS-ICYH 68

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g01990 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g01990 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6580592.11.86e-1585.37hypothetical protein SDJN03_20594, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Cp4.1LG03g01990 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g01990 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g01990.1Cp4.1LG03g01990.1mRNA