Cp4.1LG03g01840 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG03g01840
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionribonuclease P protein subunit p29
LocationCp4.1LG03: 826839 .. 831117 (-)
RNA-Seq ExpressionCp4.1LG03g01840
SyntenyCp4.1LG03g01840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCATTTCTATTATTTATTTCTCTAAACCCTATTTTCACACTCCCGCCACCGTCGAATCGCCACCGCCCCTCCTCTCCTTCTCATCAATTTATTTATTTTACCGGTTCGAACAAGCCTATTTCACGTTACAGCCCCTCCCTCCCAGAGTCCGCCACTGCACCTCTCTCACCGCGCCGCTCGCTGCTCGCCGATCCTGCTGGACATCGTCTCAGCGGCTGTCGCAGCACGCTGCAGTCTCATCTTTTCCGACTCCAAGGTCTGTTTTATCTGGGCATGTTATGTTATTTTGTACATACACATACTGAGAAGAAAATCAAGAGTTTTTGTTTAAGTTCTTCATCACTGAAAGTTCAATCAGTTTAAATGAAAATAGATGAAATAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAGCAGGTTGATTGGGTGCCGTTGTGTTTGCTTGAATAAAGAAGAAACTGAGTAATATAGAAGAAATTACTGGGAGGCAATCTGATTCCATTATTTTCTTACATGCCTAAATTCTAGATCCTTTCAAATTCGACCAATTTCGAAAGAATGGAGTAGCTGTTATGATTTTTTTTATGTAAAAACAATGGCCGAATAGCCACTATAGAAACAGCCCCGCGGCAATTTTGAACTGCCATGTGCTACCCTCTGCCTTTTGATTTGTTGCATATGTTAGTCAATTGAGGCTTTGATAATCTGTATAACGCTTTGGTCTCTACGGAAAATTGGCGTGTCTCTAGATCATGATTTTTCTGTCAACACAATTATCAATCAAAGTAGTGTTCATGGACCTCTACCTTTGTTTTCTTTGCATGTTTTTTCGAGTTCTATGTATTAAAAAATCATATATTGTTTCAGGAAGGGTTAATCAACTGCCCATTTCCAATGGCGGGCAATGTAGCTTCTCAAGATTTAAGGAAACACGCTTTGGAGGCATTGGAGCGGAGGTGTGCTGCTGCGAAAGTCGAACTTCTTCAACAACAGAAGAAGACCGGTTCTACAGAGAAATTAAAGAAAGAATTCAAGGGAAAAGCTACTTTGAACGACTCCTCTTCAACTGTTGTTTCGGGAAATCATTATGATTCTTCAATTCTTTTGCCGTCTGAAGGGAAACCCTCAAATAAAGGTCCCCTCGTCGTAACTATGGTTTTAATATTTTCGTTCGCTGGGAAGGCAGTATGTTTTAGTTTGCTTATTAGTTGATTTCTTTCATGTGCAGATGTGAATGAAAGCGACCCTATATATTTCACCCTCTCAGCTGCTGTGAATGAAAATTTGATGTCTACAAATATGGATGTAAGTTGGCATCACTGGAAACTTAAAAGGGCCTTTCAACATTTATAACTTGGTTTTCTGTTTCTTAAAAATTAAGCTTATAAATGTTATTTCATCCACACGTTTGTATGTCTGCATCCAGCTTTTTAAAAGCAATTTCAATATCTTAGCAAAATTTTGAAAACTGAAAAAGGTAGTCTTTAAAAATTTGTTTTTGAGATTTAGTTAAGAAATTAAACGTGGTATGAAAAAGATGAAAAAATGCACTAAAAATTGTGAGGAAATAAGCATCATTTTTAAAACATTAAACTATAAAAGGAAACCGTTTATCAAACGAGAACTAATAAAACTCATACTGAATCTCACGTCTTCTGTAGGTTTCAAGTGATAGAGGAAGAGTGGTTGATAAGATTTGTCACGAGCTAAGAACTAGCGGTTACATTAAGCGGTCAAGAGAATTGAAAGTTGATGCTTGGATCCTTCTTGATAACTTTGTTCCCAAACGTGCTGGAATGATTGGCTCTCGTAAGAGAGCTTTGCAGAGCAATTCAAAACGATCCAAAAGGCATATGTCCATGAAGCAACATAAAAAGTGTGGAACATTTGATCTGCCTTCTGATTTCCATAAGTGAGTTCCATTTTAATCCTTGGTTTAGAGCTCTCATCACCATCTCCTCGCCCCATTTTATCCCATATAGGATTGAATAAGAAAATGATGCTGAATATGTCTGTTTATCCTGAAATTAGAATTAGAATTTAGTAGTTGATCGATATCCATCCAAAATGAAATTTGGATGGTTATTGAGTAAACTCATGTTTGTTGCACTCTACTGAATGTTACACTTGTTCTTCATAAGCATCCATTGAAATGAGTTTTCTTCGGCTGCCACGATCATTTATGTTTGACAATGGATTATTTTGTTTGGAAAAAGGCTGATGAAAGTGTCTATTTCTCCTGAAATTAGAATTAGAATCTATTTGTTGATGGTCATCCATCAAAACAGGATTAAGAAGGTTATTCATCAAAAGGGAATTAGAATCAATAGAGTTCTAAGTTTGTTCTTCATAAGCATCCCATTGAAATGGGCTTTCTTTTGCTGTCACTATCATTTATGTTTGACCATAAATTATTGCGCTTTCTATTTCAGGTTTGAAATCTTTTGGCCAATGCACGATATGTGGAAAAGCTACATGAAACAACGGCTGTGCCATGTTGGGTTAGATTTTTACTTTTTGTTACATCAATGTTTTGCCTGTATTAGTGATAGTTATCTATGTCATTGGGTGATCAGAGTTTCAAATCTTGCAGGCCAGATACATTAGCTCGAAATCTTCTCGTCGCAGATCTTCATGGTGCCATGATCCTAGGTAAAACCATTCTTTTCTCCTATTGAATTGTTTGCATTCACATCATATTTATATAAATTCCTTGTTCATCAAATAAACCAATTTTCATACCATGGAAGAAAGCACAAAAAACAAGACCCAACCAACTAGAAGGCTACAGAAAGAAGCAAAACAAGAACAATTAGAGAATTTTGTAGACAAGAACAATTAAAATGGTTCTGTAATAAGAGCATGAGGTTTCATACTAGCGTTTCTCTGTCTCATATTGGCTATTTTATGATTTGATGATATCCACTGCAGTTGTTGAGTGTAAAATACCCGCTTTTACTGGAATAAGCGGCATCATGATTCGCGAAACTGCAGAAACATTTGGAATTGTGACTAAAGATGATAAGTTTCGAGGTAACTCCTACTTATGAATCTTGAATCTGTTGCATTTTCTGTGATCAAAACCAATTAAGTTCTATGAATTTGGCCAAGTTTTTCTAACAAATGACCTTGAATGTTTCTTTATTTTGTGGTTTTGATCTTGCAGTTGTGCCAAAGAAGTCTTCTGTGTTTATTTTCCAATGGGATTGCTGGAAAATTACCTTACTCGGAGATAAACTCAGTTCAAGAATCCCCAGTTTGCCATCTAAAAATTGATTTCAGTCAATGATCTTCAATTATACAGTAATATTTACAGTGTACAGGTAATTCTTTGCTATTTAAGCCATTAAAGGGTTTTTTTTTTTGGGTAGTTAGTGTTAGACGAACACGACTCTCCGTAATGGTATGATATTGTCCACTTTGAGTATAAGCTTTTATGACTTTGCTTTGGGCTTCCTCAAAAGGCTTCATACCAATAGAGAGAGTATTCTTTGTTTATAAACCCACGGTCATTCTCTAAGTTAGCCAAGGTGGGATTTTCAACAATTAGATTATTGAAATTGTGATATGAGTTTATACAGAAACGAGTTAATTTAAGCTTGTTTAATAACGAGTTCTTGAATTTTGTCATCATCTTATAAATTTGGTCTCTAGATCTTCAAAATTACAAATTTAGCCATGTGATATTTTAAATTTTAGGAGATTCTAAGCATAAATTTAAAAGGGTTGATTTTTTAAAATTAAAAAATATATTATAGCGTTTGGAAGTTTATAAATATATTTAATTCTTTTTAAAATTTAAATATTCAAATATAAATTTATAGTTTAATTAAATTGTAGAGGTGGTGGTCCATTATGCAGCAAGAAGCAGACAACGAGAAGGGGTTTGTTTCATGTCGAGACAAACATTAATTGACACCGACCACAATATGGCACAAGCCTTTCCTCTCTGCAACAAGATGGCCGCCGAGTTACGGTGGTTCCGCCGTACGCGCCTTCTCAGGTCCACCGTGTCGCTCTCTCTCTCTCCCACGGTTCCTCCGCCGGTACGGCCGCCCCACACCTACTCCCATGTGCGGCACTAACCAAGTTGTTTCACAACGCAATAAAACTTGTAATATTTTTATATTGATTATTTGCTTTATTTATTGGAATTTGAACTTTCTAGCTCTAAGAAAATAATATATATAAAAACTACCACCGAATTATATTCATTTTCAAAAAATTAATCATG

mRNA sequence

CCATTTCTATTATTTATTTCTCTAAACCCTATTTTCACACTCCCGCCACCGTCGAATCGCCACCGCCCCTCCTCTCCTTCTCATCAATTTATTTATTTTACCGGTTCGAACAAGCCTATTTCACGTTACAGCCCCTCCCTCCCAGAGTCCGCCACTGCACCTCTCTCACCGCGCCGCTCGCTGCTCGCCGATCCTGCTGGACATCGTCTCAGCGGCTGTCGCAGCACGCTGCAGTCTCATCTTTTCCGACTCCAAGGGTTAATCAACTGCCCATTTCCAATGGCGGGCAATGTAGCTTCTCAAGATTTAAGGAAACACGCTTTGGAGGCATTGGAGCGGAGGTGTGCTGCTGCGAAAGTCGAACTTCTTCAACAACAGAAGAAGACCGGTTCTACAGAGAAATTAAAGAAAGAATTCAAGGGAAAAGCTACTTTGAACGACTCCTCTTCAACTGTTGTTTCGGGAAATCATTATGATTCTTCAATTCTTTTGCCGTCTGAAGGGAAACCCTCAAATAAAGATGTGAATGAAAGCGACCCTATATATTTCACCCTCTCAGCTGCTGTGAATGAAAATTTGATAACTAGCGGTTACATTAAGCGGTCAAGAGAATTGAAAGTTGATGCTTGGATCCTTCTTGATAACTTTGTTCCCAAACGTGCTGGAATGATTGGCTCTCGTAAGAGAGCTTTGCAGAGCAATTCAAAACGATCCAAAAGGCATATGTCCATGAAGCAACATAAAAAGTGTGGAACATTTGATCTGCCTTCTGATTTCCATAAGTTTGAAATCTTTTGGCCAATGCACGATATGTGGAAAAGCTACATGAAACAACGGCTGTGCCATGTTGGGCCAGATACATTAGCTCGAAATCTTCTCGTCGCAGATCTTCATGGTGCCATGATCCTAGTTGTTGAGTGTAAAATACCCGCTTTTACTGGAATAAGCGGCATCATGATTCGCGAAACTGCAGAAACATTTGGAATTGTGACTAAAGATGATAAGTTTCGAGTTGTGCCAAAGAAGTCTTCTGTGTTTATTTTCCAATGGGATTGCTGGAAAATTACCTTACTCGGAGATAAACTCAGTTCAAGAATCCCCAGAGATTCTAAGCATAAATTTAAAAGGAGGTGGTGGTCCATTATGCAGCAAGAAGCAGACAACGAGAAGGGGTTTGTTTCATGTCGAGACAAACATTAATTGACACCGACCACAATATGGCACAAGCCTTTCCTCTCTGCAACAAGATGGCCGCCGAGTTACGGTGGTTCCGCCGTACGCGCCTTCTCAGGTCCACCGTGTCGCTCTCTCTCTCTCCCACGGTTCCTCCGCCGGTACGGCCGCCCCACACCTACTCCCATGTGCGGCACTAACCAAGTTGTTTCACAACGCAATAAAACTTGTAATATTTTTATATTGATTATTTGCTTTATTTATTGGAATTTGAACTTTCTAGCTCTAAGAAAATAATATATATAAAAACTACCACCGAATTATATTCATTTTCAAAAAATTAATCATG

Coding sequence (CDS)

CCATTTCTATTATTTATTTCTCTAAACCCTATTTTCACACTCCCGCCACCGTCGAATCGCCACCGCCCCTCCTCTCCTTCTCATCAATTTATTTATTTTACCGGTTCGAACAAGCCTATTTCACGTTACAGCCCCTCCCTCCCAGAGTCCGCCACTGCACCTCTCTCACCGCGCCGCTCGCTGCTCGCCGATCCTGCTGGACATCGTCTCAGCGGCTGTCGCAGCACGCTGCAGTCTCATCTTTTCCGACTCCAAGGGTTAATCAACTGCCCATTTCCAATGGCGGGCAATGTAGCTTCTCAAGATTTAAGGAAACACGCTTTGGAGGCATTGGAGCGGAGGTGTGCTGCTGCGAAAGTCGAACTTCTTCAACAACAGAAGAAGACCGGTTCTACAGAGAAATTAAAGAAAGAATTCAAGGGAAAAGCTACTTTGAACGACTCCTCTTCAACTGTTGTTTCGGGAAATCATTATGATTCTTCAATTCTTTTGCCGTCTGAAGGGAAACCCTCAAATAAAGATGTGAATGAAAGCGACCCTATATATTTCACCCTCTCAGCTGCTGTGAATGAAAATTTGATAACTAGCGGTTACATTAAGCGGTCAAGAGAATTGAAAGTTGATGCTTGGATCCTTCTTGATAACTTTGTTCCCAAACGTGCTGGAATGATTGGCTCTCGTAAGAGAGCTTTGCAGAGCAATTCAAAACGATCCAAAAGGCATATGTCCATGAAGCAACATAAAAAGTGTGGAACATTTGATCTGCCTTCTGATTTCCATAAGTTTGAAATCTTTTGGCCAATGCACGATATGTGGAAAAGCTACATGAAACAACGGCTGTGCCATGTTGGGCCAGATACATTAGCTCGAAATCTTCTCGTCGCAGATCTTCATGGTGCCATGATCCTAGTTGTTGAGTGTAAAATACCCGCTTTTACTGGAATAAGCGGCATCATGATTCGCGAAACTGCAGAAACATTTGGAATTGTGACTAAAGATGATAAGTTTCGAGTTGTGCCAAAGAAGTCTTCTGTGTTTATTTTCCAATGGGATTGCTGGAAAATTACCTTACTCGGAGATAAACTCAGTTCAAGAATCCCCAGAGATTCTAAGCATAAATTTAAAAGGAGGTGGTGGTCCATTATGCAGCAAGAAGCAGACAACGAGAAGGGGTTTGTTTCATGTCGAGACAAACATTAA

Protein sequence

PFLLFISLNPIFTLPPPSNRHRPSSPSHQFIYFTGSNKPISRYSPSLPESATAPLSPRRSLLADPAGHRLSGCRSTLQSHLFRLQGLINCPFPMAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVVSGNHYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLITSGYIKRSRELKVDAWILLDNFVPKRAGMIGSRKRALQSNSKRSKRHMSMKQHKKCGTFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVVECKIPAFTGISGIMIRETAETFGIVTKDDKFRVVPKKSSVFIFQWDCWKITLLGDKLSSRIPRDSKHKFKRRWWSIMQQEADNEKGFVSCRDKH
Homology
[Close]
BLAST of Cp4.1LG03g01840 vs. ExPASy Swiss-Prot
Match: Q9ZW76 (Ribonuclease MRP protein subunit POP4 OS=Arabidopsis thaliana OX=3702 GN=POP4 PE=2 SV=2)

HSP 1 Score: 219.2 bits (557), Expect = 8.6e-56
Identity = 131/300 (43.67%), Postives = 177/300 (59.00%), Query Frame = 0 

Query: 94  MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV 153
           M       D  + A+ A+ERR A AK +LLQQQ+     +K +K+ KG + ++ S    +
Sbjct: 1   MGTETVVHDQARWAMAAMERRLAVAKAQLLQQQQ-----QKNEKDKKGTSDVDVS----M 60

Query: 154 SGNHYDSSILLPSEGKPSNKDVNESDPIYFT-LSAAVNENLITSG--------------- 213
             +H   S+  PS+      D  + D + +T LS  V+ENL+ +                
Sbjct: 61  KESHQADSLPTPSKTSIKKVDPKDDDSVAYTKLSHPVDENLLATNVKFSSAKGTIVDKVL 120

Query: 214 ------------YIKRSRELKVDAWILLDNFVPKRAGMIGSRKRALQSNSKRSKRHMSMK 273
                       Y++ ++ +K+D +ILLDNFV  R+   GS K+A Q +SKRSK  MSMK
Sbjct: 121 HNLLRSGDSAQKYLQGTKSVKLDNYILLDNFVQSRSSASGS-KKASQKDSKRSKSRMSMK 180

Query: 274 QHKKCGTFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVV 333
           + KK G   +P D  KF++F PMH MW+SYM + +   G   L+  LL ADLHGA + V 
Sbjct: 181 RLKKSGALHIPKDLQKFDLFKPMHGMWESYMMKLIKVTGKIQLSLTLLSADLHGAFMFVA 240

Query: 334 ECKIPAFTGISGIMIRETAETFGIVTKDDKFRVVPKKSSVFIFQWDCWKITLLGDKLSSR 366
           ECKI +FTG+ GIM+RET+ETFGI+T+DDKFRVVPKK SVFI Q DCWKITL GDK  SR
Sbjct: 241 ECKIASFTGVQGIMVRETSETFGIITRDDKFRVVPKKLSVFIIQLDCWKITLHGDKFISR 290

[Close]
BLAST of Cp4.1LG03g01840 vs. ExPASy Swiss-Prot
Match: O95707 (Ribonuclease P protein subunit p29 OS=Homo sapiens OX=9606 GN=POP4 PE=1 SV=2)

HSP 1 Score: 106.7 bits (265), Expect = 6.2e-22
Identity = 62/211 (29.38%), Postives = 110/211 (52.13%), Query Frame = 0 

Query: 171 SNKDVNESDPIYFTLSAAVNENLITSGYIKRSRELKVDAWILLDNFVPKRAGMIGSRKRA 230
           S K+ N+SD      S A         ++KRS           ++ + ++A ++    R 
Sbjct: 10  SQKEANDSD---VQPSGAQRAEAFVRAFLKRSTPRMSPQ--AREDQLQRKAVVLEYFTRH 69

Query: 231 LQSNSKRSKRHMSMKQHKKCGTFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDT--- 290
            +   K+  + +S +Q ++   FD+  +  ++ +F P+H++WK Y++     + PDT   
Sbjct: 70  KRKEKKKKAKGLSARQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCSGLKPDTQPQ 129

Query: 291 -LARNLLVADLHGAMILVVECKIPAFTGISGIMIRETAETFGIVTKDDKFRVVPKKSSVF 350
            +   LL ADLHGA+I V + K P++ GI+GI+++ET   F I+TK+D+ +V+PK + VF
Sbjct: 130 MIQAKLLKADLHGAIISVTKSKCPSYVGITGILLQETKHIFKIITKEDRLKVIPKLNCVF 189

Query: 351 IFQWDCWKITLLGDKLSSRIPRDSKHKFKRR 378
             + D +   + G K   R    S  KFK +
Sbjct: 190 TVETDGFISYIYGSKFQLRSSERSAKKFKAK 215

[Close]
BLAST of Cp4.1LG03g01840 vs. ExPASy Swiss-Prot
Match: Q2KIB9 (Ribonuclease P protein subunit p29 OS=Bos taurus OX=9913 GN=POP4 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 8.1e-22
Identity = 60/211 (28.44%), Postives = 109/211 (51.66%), Query Frame = 0 

Query: 171 SNKDVNESDPIYFTLSAAVNENLITSGYIKRSRELKVDAWILLDNFVPKRAGMIGSRKRA 230
           S K+  E D  +   S A         ++KRS          L++ + ++A ++      
Sbjct: 10  SQKEAKELDVQH---SGAQRAEAFVRAFLKRSMPRMSQQ--ALEDHLQRKAVVLEYFTHR 69

Query: 231 LQSNSKRSKRHMSMKQHKKCGTFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDT--- 290
            Q   ++  + +S KQ ++   FD+  +  ++ +F P+H++WK Y++     + PDT   
Sbjct: 70  KQKEKRKKSKGLSAKQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPDTQPQ 129

Query: 291 -LARNLLVADLHGAMILVVECKIPAFTGISGIMIRETAETFGIVTKDDKFRVVPKKSSVF 350
            +   LL ADLHGA++ V + K P++ G++GI+++ET   F I+TK+D+ +V+PK + VF
Sbjct: 130 MIQAKLLKADLHGAIVSVTKSKCPSYVGVTGILLQETKHVFKIITKEDRLKVIPKLNCVF 189

Query: 351 IFQWDCWKITLLGDKLSSRIPRDSKHKFKRR 378
             + D +   + G K   R    S  KFK +
Sbjct: 190 TVEIDGFISYIYGSKFQLRSSERSAKKFKAK 215

[Close]
BLAST of Cp4.1LG03g01840 vs. ExPASy Swiss-Prot
Match: Q5R7B0 (Ribonuclease P protein subunit p29 OS=Pongo abelii OX=9601 GN=POP4 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.4e-21
Identity = 62/211 (29.38%), Postives = 110/211 (52.13%), Query Frame = 0 

Query: 171 SNKDVNESDPIYFTLSAAVNENLITSGYIKRSRELKVDAWILLDNFVPKRAGMIGSRKRA 230
           S K+ N+SD      S A         ++KRS           ++ + ++A ++    R 
Sbjct: 10  SQKEANDSD---VQPSGAQRAEAFVRAFLKRSTPRMSPQ--AREDQLQRKAVVLEYFTRH 69

Query: 231 LQSNSKRSKRHMSMKQHKKCGTFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDT--- 290
            +   K+  + +S +Q ++   FD+  +  ++ +F P+H++WK Y++     + PDT   
Sbjct: 70  KRKEKKKKAKGLSARQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPDTQPQ 129

Query: 291 -LARNLLVADLHGAMILVVECKIPAFTGISGIMIRETAETFGIVTKDDKFRVVPKKSSVF 350
            +   LL ADLHGA+I V + K P++ GI+GI+++ET   F I+TK+D+ +V+PK + VF
Sbjct: 130 MIQAKLLKADLHGAIISVTKSKCPSYVGITGILLQETKHIFKIITKEDRLKVIPKLNCVF 189

Query: 351 IFQWDCWKITLLGDKLSSRIPRDSKHKFKRR 378
             + D +   + G K   R    S  KFK +
Sbjct: 190 TVEIDGFISYIYGSKFQLRSSERSAKKFKAK 215

[Close]
BLAST of Cp4.1LG03g01840 vs. ExPASy Swiss-Prot
Match: Q5M882 (Ribonuclease P protein subunit p29 OS=Rattus norvegicus OX=10116 GN=Pop4 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.4e-21
Identity = 50/146 (34.25%), Postives = 86/146 (58.90%), Query Frame = 0 

Query: 236 KRSKRHMSMKQHKKCGTFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDT----LARN 295
           K+  + +S KQ ++   FD+  +  ++ +F P+H++WK Y++     + PDT    +   
Sbjct: 71  KKKSKGLSAKQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPDTQPQMIQAK 130

Query: 296 LLVADLHGAMILVVECKIPAFTGISGIMIRETAETFGIVTKDDKFRVVPKKSSVFIFQWD 355
           LL ADLHGA+I V + K P++ G++GI+++ET   F I+TK+D  +V+PK++ VF  + D
Sbjct: 131 LLKADLHGAVISVTKSKCPSYVGVTGILLQETKHVFKIITKEDHLKVIPKQNCVFTIEID 190

Query: 356 CWKITLLGDKLSSRIPRDSKHKFKRR 378
            +   + G K   R    S  KFK +
Sbjct: 191 DFISYIYGSKFQLRASERSAKKFKAK 216

[Close]
BLAST of Cp4.1LG03g01840 vs. NCBI nr
Match: KAG7017346.1 (Ribonuclease P protein subunit p29, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 662 bits (1707), Expect = 1.17e-237
Identity = 342/383 (89.30%), Postives = 346/383 (90.34%), Query Frame = 0 

Query: 7   SLNPIFTLPPPSNRHRPSSPSHQFIYFTGSNKPISRYSPSLPESATAPLSPRRSLLADPA 66
           SLNPIFTLPPP+NRHRPSSPSHQFIYFTGSNK ISRYSPSLPESA APLSPRRSLLADPA
Sbjct: 1   SLNPIFTLPPPTNRHRPSSPSHQFIYFTGSNKTISRYSPSLPESAAAPLSPRRSLLADPA 60

Query: 67  GHRLSGCRSTLQSHLFRLQGLINCPFPMAGNVASQDLRKHALEALERRCAAAKVELLQQQ 126
           GHRLSGCR          +GLINCP PMAGNVASQDLRKHALEALERRCAAAKVELLQQQ
Sbjct: 61  GHRLSGCRLIFSDSK---EGLINCPCPMAGNVASQDLRKHALEALERRCAAAKVELLQQQ 120

Query: 127 KKTGSTEKLKKEFKGKATLNDSSSTVVSGNHYDSSILLPSEGKPSNKDVNESDPIYFTLS 186
           KKTGSTEKLKKEFKGKATLNDSSSTVVSGN YDSSILLPSEGKPSNKDVNESDPIYFTLS
Sbjct: 121 KKTGSTEKLKKEFKGKATLNDSSSTVVSGNQYDSSILLPSEGKPSNKDVNESDPIYFTLS 180

Query: 187 AAVNENLI----------------------TSGYIKRSRELKVDAWILLDNFVPKRAGMI 246
           AAVNENL+                      TSGYIKRSRELKVDAWILLDNFVPKRAGMI
Sbjct: 181 AAVNENLMSTNMDVSSNRGRVVDKICHELRTSGYIKRSRELKVDAWILLDNFVPKRAGMI 240

Query: 247 GSRKRALQSNSKRSKRHMSMKQHKKCGTFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVG 306
           GSRKRALQSNSKRSKRHMSMKQHKKCGTFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVG
Sbjct: 241 GSRKRALQSNSKRSKRHMSMKQHKKCGTFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVG 300

Query: 307 PDTLARNLLVADLHGAMILVVECKIPAFTGISGIMIRETAETFGIVTKDDKFRVVPKKSS 366
           PDTLARNLLVADLHGAMILVVECKIPAFTGISGIMIRETAETFGI TKD+KFRVVPKKSS
Sbjct: 301 PDTLARNLLVADLHGAMILVVECKIPAFTGISGIMIRETAETFGIFTKDEKFRVVPKKSS 360

[Close]
BLAST of Cp4.1LG03g01840 vs. NCBI nr
Match: KAG6580591.1 (Beta-1,4-xylosyltransferase IRX9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 591 bits (1523), Expect = 6.40e-205
Identity = 314/376 (83.51%), Postives = 321/376 (85.37%), Query Frame = 0 

Query: 15  PPPSNRHRPSSPSHQFIYFTGSNKPISRY-SPSLPESATAPLSPRRSLLADPAGHRLSGC 74
           PPP  +  P      F + T     +S + SPSLPESA APLSPRRSLLADPAGHRLSGC
Sbjct: 325 PPPIQQLPPVHEKEDFGFRT-----VSEWVSPSLPESAAAPLSPRRSLLADPAGHRLSGC 384

Query: 75  RSTLQSHLFRLQGLINCPFPMAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTE 134
           R          +GLINCP PMAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTE
Sbjct: 385 RLIFSDSK---EGLINCPCPMAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTE 444

Query: 135 KLKKEFKGKATLNDSSSTVVSGNHYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENL 194
           KLKKEFKGKATLNDSSSTVVSGN YDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENL
Sbjct: 445 KLKKEFKGKATLNDSSSTVVSGNQYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENL 504

Query: 195 I----------------------TSGYIKRSRELKVDAWILLDNFVPKRAGMIGSRKRAL 254
           +                      TSGYIKRSRELKVDAWILLDNFVPKRAGMIGSRKRAL
Sbjct: 505 MSTNMDVSSNRGRVVDKICHELRTSGYIKRSRELKVDAWILLDNFVPKRAGMIGSRKRAL 564

Query: 255 QSNSKRSKRHMSMKQHKKCGTFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARN 314
           QSNSKRSKRHMSMKQHKKCGTFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARN
Sbjct: 565 QSNSKRSKRHMSMKQHKKCGTFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARN 624

Query: 315 LLVADLHGAMILVVECKIPAFTGISGIMIRETAETFGIVTKDDKFRVVPKKSSVFIFQWD 367
           LLVADLHGAMILVVECKIPAFTGISGIMIRETAETFGI TKD+KFRVVPKKSSVFIFQWD
Sbjct: 625 LLVADLHGAMILVVECKIPAFTGISGIMIRETAETFGIFTKDEKFRVVPKKSSVFIFQWD 684

[Close]
BLAST of Cp4.1LG03g01840 vs. NCBI nr
Match: XP_023526523.1 (ribonuclease P protein subunit p29 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 531 bits (1367), Expect = 3.07e-187
Identity = 273/296 (92.23%), Postives = 274/296 (92.57%), Query Frame = 0 

Query: 94  MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV 153
           MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV
Sbjct: 1   MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV 60

Query: 154 SGNHYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLI------------------- 213
           SGNHYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENL+                   
Sbjct: 61  SGNHYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLMSTNMDVSSDRGRVVDKICH 120

Query: 214 ---TSGYIKRSRELKVDAWILLDNFVPKRAGMIGSRKRALQSNSKRSKRHMSMKQHKKCG 273
              TSGYIKRSRELKVDAWILLDNFVPKRAGMIGSRKRALQSNSKRSKRHMSMKQHKKCG
Sbjct: 121 ELRTSGYIKRSRELKVDAWILLDNFVPKRAGMIGSRKRALQSNSKRSKRHMSMKQHKKCG 180

Query: 274 TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVVECKIPA 333
           TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVVECKIPA
Sbjct: 181 TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVVECKIPA 240

Query: 334 FTGISGIMIRETAETFGIVTKDDKFRVVPKKSSVFIFQWDCWKITLLGDKLSSRIP 367
           FTGISGIMIRETAETFGIVTKDDKFRVVPKKSSVFIFQWDCWKITLLGDKLSSRIP
Sbjct: 241 FTGISGIMIRETAETFGIVTKDDKFRVVPKKSSVFIFQWDCWKITLLGDKLSSRIP 296

[Close]
BLAST of Cp4.1LG03g01840 vs. NCBI nr
Match: XP_022983897.1 (uncharacterized protein LOC111482383 [Cucurbita maxima] >XP_022983898.1 uncharacterized protein LOC111482383 [Cucurbita maxima] >XP_022983899.1 uncharacterized protein LOC111482383 [Cucurbita maxima])

HSP 1 Score: 522 bits (1345), Expect = 6.85e-184
Identity = 269/296 (90.88%), Postives = 271/296 (91.55%), Query Frame = 0 

Query: 94  MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV 153
           MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSS+VV
Sbjct: 1   MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSSVV 60

Query: 154 SGNHYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLI------------------- 213
           SGN YDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENL+                   
Sbjct: 61  SGNQYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLMSTNMDVSSNRGRVVDKICH 120

Query: 214 ---TSGYIKRSRELKVDAWILLDNFVPKRAGMIGSRKRALQSNSKRSKRHMSMKQHKKCG 273
              TSGYIKRSRELKVDAWILLDNFVPKRAG IGSRKRALQSNSKRSKRHMSMKQHKKCG
Sbjct: 121 KLRTSGYIKRSRELKVDAWILLDNFVPKRAGKIGSRKRALQSNSKRSKRHMSMKQHKKCG 180

Query: 274 TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVVECKIPA 333
           TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVVECKIPA
Sbjct: 181 TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVVECKIPA 240

Query: 334 FTGISGIMIRETAETFGIVTKDDKFRVVPKKSSVFIFQWDCWKITLLGDKLSSRIP 367
           FTGISGIMIRETAETFGIVTKDDKFRVVPKKSS FIFQWDCWKITLLGDKLSSRIP
Sbjct: 241 FTGISGIMIRETAETFGIVTKDDKFRVVPKKSSAFIFQWDCWKITLLGDKLSSRIP 296

[Close]
BLAST of Cp4.1LG03g01840 vs. NCBI nr
Match: XP_022934539.1 (ribonuclease P protein subunit p29 [Cucurbita moschata])

HSP 1 Score: 518 bits (1333), Expect = 4.59e-182
Identity = 267/296 (90.20%), Postives = 270/296 (91.22%), Query Frame = 0 

Query: 94  MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV 153
           MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV
Sbjct: 1   MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV 60

Query: 154 SGNHYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLI------------------- 213
           SGN YDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENL+                   
Sbjct: 61  SGNQYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLMFTNMDVSSNRGRVVDKICH 120

Query: 214 ---TSGYIKRSRELKVDAWILLDNFVPKRAGMIGSRKRALQSNSKRSKRHMSMKQHKKCG 273
              TSGYIKRSRELKVDAWILLDNFVPKRA MIGSRKRALQS+SKRSKRHMSMKQHKKCG
Sbjct: 121 ELRTSGYIKRSRELKVDAWILLDNFVPKRAEMIGSRKRALQSSSKRSKRHMSMKQHKKCG 180

Query: 274 TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVVECKIPA 333
           TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLV DLHGAMILVVECKIPA
Sbjct: 181 TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVVDLHGAMILVVECKIPA 240

Query: 334 FTGISGIMIRETAETFGIVTKDDKFRVVPKKSSVFIFQWDCWKITLLGDKLSSRIP 367
           FTGISGIMIRETAETFGI TKD+KFRVVPKKSSVFIFQWDCWKITLLGDKLSSRIP
Sbjct: 241 FTGISGIMIRETAETFGIFTKDEKFRVVPKKSSVFIFQWDCWKITLLGDKLSSRIP 296

[Close]
BLAST of Cp4.1LG03g01840 vs. ExPASy TrEMBL
Match: A0A6J1J0L0 (uncharacterized protein LOC111482383 OS=Cucurbita maxima OX=3661 GN=LOC111482383 PE=3 SV=1)

HSP 1 Score: 522 bits (1345), Expect = 3.31e-184
Identity = 269/296 (90.88%), Postives = 271/296 (91.55%), Query Frame = 0 

Query: 94  MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV 153
           MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSS+VV
Sbjct: 1   MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSSVV 60

Query: 154 SGNHYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLI------------------- 213
           SGN YDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENL+                   
Sbjct: 61  SGNQYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLMSTNMDVSSNRGRVVDKICH 120

Query: 214 ---TSGYIKRSRELKVDAWILLDNFVPKRAGMIGSRKRALQSNSKRSKRHMSMKQHKKCG 273
              TSGYIKRSRELKVDAWILLDNFVPKRAG IGSRKRALQSNSKRSKRHMSMKQHKKCG
Sbjct: 121 KLRTSGYIKRSRELKVDAWILLDNFVPKRAGKIGSRKRALQSNSKRSKRHMSMKQHKKCG 180

Query: 274 TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVVECKIPA 333
           TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVVECKIPA
Sbjct: 181 TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVVECKIPA 240

Query: 334 FTGISGIMIRETAETFGIVTKDDKFRVVPKKSSVFIFQWDCWKITLLGDKLSSRIP 367
           FTGISGIMIRETAETFGIVTKDDKFRVVPKKSS FIFQWDCWKITLLGDKLSSRIP
Sbjct: 241 FTGISGIMIRETAETFGIVTKDDKFRVVPKKSSAFIFQWDCWKITLLGDKLSSRIP 296

[Close]
BLAST of Cp4.1LG03g01840 vs. ExPASy TrEMBL
Match: A0A6J1F2W6 (ribonuclease P protein subunit p29 OS=Cucurbita moschata OX=3662 GN=LOC111441684 PE=3 SV=1)

HSP 1 Score: 518 bits (1333), Expect = 2.22e-182
Identity = 267/296 (90.20%), Postives = 270/296 (91.22%), Query Frame = 0 

Query: 94  MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV 153
           MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV
Sbjct: 1   MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV 60

Query: 154 SGNHYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLI------------------- 213
           SGN YDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENL+                   
Sbjct: 61  SGNQYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLMFTNMDVSSNRGRVVDKICH 120

Query: 214 ---TSGYIKRSRELKVDAWILLDNFVPKRAGMIGSRKRALQSNSKRSKRHMSMKQHKKCG 273
              TSGYIKRSRELKVDAWILLDNFVPKRA MIGSRKRALQS+SKRSKRHMSMKQHKKCG
Sbjct: 121 ELRTSGYIKRSRELKVDAWILLDNFVPKRAEMIGSRKRALQSSSKRSKRHMSMKQHKKCG 180

Query: 274 TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVVECKIPA 333
           TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLV DLHGAMILVVECKIPA
Sbjct: 181 TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVVDLHGAMILVVECKIPA 240

Query: 334 FTGISGIMIRETAETFGIVTKDDKFRVVPKKSSVFIFQWDCWKITLLGDKLSSRIP 367
           FTGISGIMIRETAETFGI TKD+KFRVVPKKSSVFIFQWDCWKITLLGDKLSSRIP
Sbjct: 241 FTGISGIMIRETAETFGIFTKDEKFRVVPKKSSVFIFQWDCWKITLLGDKLSSRIP 296

[Close]
BLAST of Cp4.1LG03g01840 vs. ExPASy TrEMBL
Match: A0A1S3B674 (Ribonuclease P protein subunit p29 OS=Cucumis melo OX=3656 GN=LOC103486457 PE=3 SV=1)

HSP 1 Score: 448 bits (1153), Expect = 7.79e-155
Identity = 239/305 (78.36%), Postives = 254/305 (83.28%), Query Frame = 0 

Query: 85  QGLINCPFPMAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKAT 144
           +GLIN    M+   ASQDLRKHALEALERRCAAAKVELLQQQK   STEK KKE KGK++
Sbjct: 5   EGLINQQISMSDKKASQDLRKHALEALERRCAAAKVELLQQQK-ISSTEKSKKEVKGKSS 64

Query: 145 LNDSSSTVVSGNHYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLITS-------- 204
           LND +S VVS N Y+SSI LPSEGKP NKDVNESDPIYFTLSAAVNE L+ S        
Sbjct: 65  LNDPTS-VVSRNQYNSSITLPSEGKPPNKDVNESDPIYFTLSAAVNEKLMASSMDVSKNR 124

Query: 205 --------------GYIKRSRELKVDAWILLDNFVPKRAGMIGSRKRALQSNSKRSKRHM 264
                         GY+KRS+ELKVDA ILLDNFVPKRAGMIGSR R L+S SKRSKRHM
Sbjct: 125 GRVVDKICHELKNSGYMKRSKELKVDASILLDNFVPKRAGMIGSRMRDLRSISKRSKRHM 184

Query: 265 SMKQHKKCGTFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMI 324
           SMKQHKKCGTFDLPSD HK+EIFWPMHDMWKSYMKQRL +VGPD LARNLL+ADLHGAMI
Sbjct: 185 SMKQHKKCGTFDLPSDCHKYEIFWPMHDMWKSYMKQRLHNVGPDALARNLLIADLHGAMI 244

Query: 325 LVVECKIPAFTGISGIMIRETAETFGIVTKDDKFRVVPKKSSVFIFQWDCWKITLLGDKL 367
            VVECKIPAFTG SG+MIRETAETFGIVTKDDKFRVVPKKSSVFIFQWDCWK+TLLGDKL
Sbjct: 245 RVVECKIPAFTGTSGVMIRETAETFGIVTKDDKFRVVPKKSSVFIFQWDCWKVTLLGDKL 304

[Close]
BLAST of Cp4.1LG03g01840 vs. ExPASy TrEMBL
Match: A0A1S3B6Y6 (uncharacterized protein LOC103486457 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486457 PE=3 SV=1)

HSP 1 Score: 442 bits (1136), Expect = 1.87e-152
Identity = 235/296 (79.39%), Postives = 249/296 (84.12%), Query Frame = 0 

Query: 94  MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV 153
           M+   ASQDLRKHALEALERRCAAAKVELLQQQK   STEK KKE KGK++LND +S VV
Sbjct: 1   MSDKKASQDLRKHALEALERRCAAAKVELLQQQK-ISSTEKSKKEVKGKSSLNDPTS-VV 60

Query: 154 SGNHYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLITS----------------- 213
           S N Y+SSI LPSEGKP NKDVNESDPIYFTLSAAVNE L+ S                 
Sbjct: 61  SRNQYNSSITLPSEGKPPNKDVNESDPIYFTLSAAVNEKLMASSMDVSKNRGRVVDKICH 120

Query: 214 -----GYIKRSRELKVDAWILLDNFVPKRAGMIGSRKRALQSNSKRSKRHMSMKQHKKCG 273
                GY+KRS+ELKVDA ILLDNFVPKRAGMIGSR R L+S SKRSKRHMSMKQHKKCG
Sbjct: 121 ELKNSGYMKRSKELKVDASILLDNFVPKRAGMIGSRMRDLRSISKRSKRHMSMKQHKKCG 180

Query: 274 TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVVECKIPA 333
           TFDLPSD HK+EIFWPMHDMWKSYMKQRL +VGPD LARNLL+ADLHGAMI VVECKIPA
Sbjct: 181 TFDLPSDCHKYEIFWPMHDMWKSYMKQRLHNVGPDALARNLLIADLHGAMIRVVECKIPA 240

Query: 334 FTGISGIMIRETAETFGIVTKDDKFRVVPKKSSVFIFQWDCWKITLLGDKLSSRIP 367
           FTG SG+MIRETAETFGIVTKDDKFRVVPKKSSVFIFQWDCWK+TLLGDKLSSRIP
Sbjct: 241 FTGTSGVMIRETAETFGIVTKDDKFRVVPKKSSVFIFQWDCWKVTLLGDKLSSRIP 294

[Close]
BLAST of Cp4.1LG03g01840 vs. ExPASy TrEMBL
Match: A0A5A7TR23 (Ribonuclease P protein subunit p29 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G003780 PE=3 SV=1)

HSP 1 Score: 442 bits (1136), Expect = 1.87e-152
Identity = 235/296 (79.39%), Postives = 249/296 (84.12%), Query Frame = 0 

Query: 94  MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV 153
           M+   ASQDLRKHALEALERRCAAAKVELLQQQK   STEK KKE KGK++LND +S VV
Sbjct: 1   MSDKKASQDLRKHALEALERRCAAAKVELLQQQK-ISSTEKSKKEVKGKSSLNDPTS-VV 60

Query: 154 SGNHYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLITS----------------- 213
           S N Y+SSI LPSEGKP NKDVNESDPIYFTLSAAVNE L+ S                 
Sbjct: 61  SRNQYNSSITLPSEGKPPNKDVNESDPIYFTLSAAVNEKLMASSMDVSKNRGRVVDKICH 120

Query: 214 -----GYIKRSRELKVDAWILLDNFVPKRAGMIGSRKRALQSNSKRSKRHMSMKQHKKCG 273
                GY+KRS+ELKVDA ILLDNFVPKRAGMIGSR R L+S SKRSKRHMSMKQHKKCG
Sbjct: 121 ELKNSGYMKRSKELKVDASILLDNFVPKRAGMIGSRMRDLRSISKRSKRHMSMKQHKKCG 180

Query: 274 TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVVECKIPA 333
           TFDLPSD HK+EIFWPMHDMWKSYMKQRL +VGPD LARNLL+ADLHGAMI VVECKIPA
Sbjct: 181 TFDLPSDCHKYEIFWPMHDMWKSYMKQRLHNVGPDALARNLLIADLHGAMIRVVECKIPA 240

Query: 334 FTGISGIMIRETAETFGIVTKDDKFRVVPKKSSVFIFQWDCWKITLLGDKLSSRIP 367
           FTG SG+MIRETAETFGIVTKDDKFRVVPKKSSVFIFQWDCWK+TLLGDKLSSRIP
Sbjct: 241 FTGTSGVMIRETAETFGIVTKDDKFRVVPKKSSVFIFQWDCWKVTLLGDKLSSRIP 294

[Close]
BLAST of Cp4.1LG03g01840 vs. TAIR 10
Match: AT2G43190.1 (ribonuclease P family protein )

HSP 1 Score: 219.2 bits (557), Expect = 6.1e-57
Identity = 131/300 (43.67%), Postives = 177/300 (59.00%), Query Frame = 0 

Query: 94  MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV 153
           M       D  + A+ A+ERR A AK +LLQQQ+     +K +K+ KG + ++ S    +
Sbjct: 1   MGTETVVHDQARWAMAAMERRLAVAKAQLLQQQQ-----QKNEKDKKGTSDVDVS----M 60

Query: 154 SGNHYDSSILLPSEGKPSNKDVNESDPIYFT-LSAAVNENLITSG--------------- 213
             +H   S+  PS+      D  + D + +T LS  V+ENL+ +                
Sbjct: 61  KESHQADSLPTPSKTSIKKVDPKDDDSVAYTKLSHPVDENLLATNVKFSSAKGTIVDKVL 120

Query: 214 ------------YIKRSRELKVDAWILLDNFVPKRAGMIGSRKRALQSNSKRSKRHMSMK 273
                       Y++ ++ +K+D +ILLDNFV  R+   GS K+A Q +SKRSK  MSMK
Sbjct: 121 HNLLRSGDSAQKYLQGTKSVKLDNYILLDNFVQSRSSASGS-KKASQKDSKRSKSRMSMK 180

Query: 274 QHKKCGTFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVV 333
           + KK G   +P D  KF++F PMH MW+SYM + +   G   L+  LL ADLHGA + V 
Sbjct: 181 RLKKSGALHIPKDLQKFDLFKPMHGMWESYMMKLIKVTGKIQLSLTLLSADLHGAFMFVA 240

Query: 334 ECKIPAFTGISGIMIRETAETFGIVTKDDKFRVVPKKSSVFIFQWDCWKITLLGDKLSSR 366
           ECKI +FTG+ GIM+RET+ETFGI+T+DDKFRVVPKK SVFI Q DCWKITL GDK  SR
Sbjct: 241 ECKIASFTGVQGIMVRETSETFGIITRDDKFRVVPKKLSVFIIQLDCWKITLHGDKFISR 290

[Close]
BLAST of Cp4.1LG03g01840 vs. TAIR 10
Match: AT2G43190.3 (ribonuclease P family protein )

HSP 1 Score: 217.6 bits (553), Expect = 1.8e-56
Identity = 132/300 (44.00%), Postives = 178/300 (59.33%), Query Frame = 0 

Query: 94  MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV 153
           M       D  + A+ A+ERR A AK +LLQQQ+     +K +K+ KG + ++ S    +
Sbjct: 1   MGTETVVHDQARWAMAAMERRLAVAKAQLLQQQQ-----QKNEKDKKGTSDVDVS----M 60

Query: 154 SGNHYDSSILLPSEGKPSNKDVNESDPIYFT-LSAAVNENLITSG--------------- 213
             +H   S+  PS+     KD  + D + +T LS  V+ENL+ +                
Sbjct: 61  KESHQADSLPTPSK-TSIKKDPKDDDSVAYTKLSHPVDENLLATNVKFSSAKGTIVDKVL 120

Query: 214 ------------YIKRSRELKVDAWILLDNFVPKRAGMIGSRKRALQSNSKRSKRHMSMK 273
                       Y++ ++ +K+D +ILLDNFV  R+   GS K+A Q +SKRSK  MSMK
Sbjct: 121 HNLLRSGDSAQKYLQGTKSVKLDNYILLDNFVQSRSSASGS-KKASQKDSKRSKSRMSMK 180

Query: 274 QHKKCGTFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVV 333
           + KK G   +P D  KF++F PMH MW+SYM + +   G   L+  LL ADLHGA + V 
Sbjct: 181 RLKKSGALHIPKDLQKFDLFKPMHGMWESYMMKLIKVTGKIQLSLTLLSADLHGAFMFVA 240

Query: 334 ECKIPAFTGISGIMIRETAETFGIVTKDDKFRVVPKKSSVFIFQWDCWKITLLGDKLSSR 366
           ECKI +FTG+ GIM+RET+ETFGI+T+DDKFRVVPKK SVFI Q DCWKITL GDK  SR
Sbjct: 241 ECKIASFTGVQGIMVRETSETFGIITRDDKFRVVPKKLSVFIIQLDCWKITLHGDKFISR 289

[Close]
BLAST of Cp4.1LG03g01840 vs. TAIR 10
Match: AT2G43190.2 (ribonuclease P family protein )

HSP 1 Score: 217.6 bits (553), Expect = 1.8e-56
Identity = 132/300 (44.00%), Postives = 178/300 (59.33%), Query Frame = 0 

Query: 94  MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV 153
           M       D  + A+ A+ERR A AK +LLQQQ+     +K +K+ KG + ++ S    +
Sbjct: 1   MGTETVVHDQARWAMAAMERRLAVAKAQLLQQQQ-----QKNEKDKKGTSDVDVS----M 60

Query: 154 SGNHYDSSILLPSEGKPSNKDVNESDPIYFT-LSAAVNENLITSG--------------- 213
             +H   S+  PS+     KD  + D + +T LS  V+ENL+ +                
Sbjct: 61  KESHQADSLPTPSK-TSIKKDPKDDDSVAYTKLSHPVDENLLATNVKFSSAKGTIVDKVL 120

Query: 214 ------------YIKRSRELKVDAWILLDNFVPKRAGMIGSRKRALQSNSKRSKRHMSMK 273
                       Y++ ++ +K+D +ILLDNFV  R+   GS K+A Q +SKRSK  MSMK
Sbjct: 121 HNLLRSGDSAQKYLQGTKSVKLDNYILLDNFVQSRSSASGS-KKASQKDSKRSKSRMSMK 180

Query: 274 QHKKCGTFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVV 333
           + KK G   +P D  KF++F PMH MW+SYM + +   G   L+  LL ADLHGA + V 
Sbjct: 181 RLKKSGALHIPKDLQKFDLFKPMHGMWESYMMKLIKVTGKIQLSLTLLSADLHGAFMFVA 240

Query: 334 ECKIPAFTGISGIMIRETAETFGIVTKDDKFRVVPKKSSVFIFQWDCWKITLLGDKLSSR 366
           ECKI +FTG+ GIM+RET+ETFGI+T+DDKFRVVPKK SVFI Q DCWKITL GDK  SR
Sbjct: 241 ECKIASFTGVQGIMVRETSETFGIITRDDKFRVVPKKLSVFIIQLDCWKITLHGDKFISR 289

[Close]
BLAST of Cp4.1LG03g01840 vs. TAIR 10
Match: AT2G43190.4 (ribonuclease P family protein )

HSP 1 Score: 202.6 bits (514), Expect = 5.9e-52
Identity = 121/273 (44.32%), Postives = 160/273 (58.61%), Query Frame = 0 

Query: 94  MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV 153
           M       D  + A+ A+ERR A AK +LLQQQ+     +K +K+ KG + ++ S    +
Sbjct: 1   MGTETVVHDQARWAMAAMERRLAVAKAQLLQQQQ-----QKNEKDKKGTSDVDVS----M 60

Query: 154 SGNHYDSSILLPSEGKPSNKDVNESDPIYFT-LSAAVNENLITSGYIKRSRELKVDAWIL 213
             +H   S+  PS+      D  + D + +T LS  V+ENL+ +     S +        
Sbjct: 61  KESHQADSLPTPSKTSIKKVDPKDDDSVAYTKLSHPVDENLLATNVKFSSAK-------- 120

Query: 214 LDNFVPKRAGMIGSRKRALQSNSKRSKRHMSMKQHKKCGTFDLPSDFHKFEIFWPMHDMW 273
               V K        K+A Q +SKRSK  MSMK+ KK G   +P D  KF++F PMH MW
Sbjct: 121 -GTIVDKSRSSASGSKKASQKDSKRSKSRMSMKRLKKSGALHIPKDLQKFDLFKPMHGMW 180

Query: 274 KSYMKQRLCHVGPDTLARNLLVADLHGAMILVVECKIPAFTGISGIMIRETAETFGIVTK 333
           +SYM + +   G   L+  LL ADLHGA + V ECKI +FTG+ GIM+RET+ETFGI+T+
Sbjct: 181 ESYMMKLIKVTGKIQLSLTLLSADLHGAFMFVAECKIASFTGVQGIMVRETSETFGIITR 240

Query: 334 DDKFRVVPKKSSVFIFQWDCWKITLLGDKLSSR 366
           DDKFRVVPKK SVFI Q DCWKITL GDK  SR
Sbjct: 241 DDKFRVVPKKLSVFIIQLDCWKITLHGDKFISR 255

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g01840 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ZW768.6e-5643.67Ribonuclease MRP protein subunit POP4 OS=Arabidopsis thaliana OX=3702 GN=POP4 PE... [more]
O957076.2e-2229.38Ribonuclease P protein subunit p29 OS=Homo sapiens OX=9606 GN=POP4 PE=1 SV=2[more]
Q2KIB98.1e-2228.44Ribonuclease P protein subunit p29 OS=Bos taurus OX=9913 GN=POP4 PE=2 SV=1[more]
Q5R7B01.4e-2129.38Ribonuclease P protein subunit p29 OS=Pongo abelii OX=9601 GN=POP4 PE=2 SV=1[more]
Q5M8821.4e-2134.25Ribonuclease P protein subunit p29 OS=Rattus norvegicus OX=10116 GN=Pop4 PE=2 SV... [more]
BLAST of Cp4.1LG03g01840 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7017346.11.17e-23789.30Ribonuclease P protein subunit p29, partial [Cucurbita argyrosperma subsp. argyr... [more]
KAG6580591.16.40e-20583.51Beta-1,4-xylosyltransferase IRX9, partial [Cucurbita argyrosperma subsp. sororia... [more]
XP_023526523.13.07e-18792.23ribonuclease P protein subunit p29 [Cucurbita pepo subsp. pepo][more]
XP_022983897.16.85e-18490.88uncharacterized protein LOC111482383 [Cucurbita maxima] >XP_022983898.1 uncharac... [more]
XP_022934539.14.59e-18290.20ribonuclease P protein subunit p29 [Cucurbita moschata][more]
BLAST of Cp4.1LG03g01840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1J0L03.31e-18490.88uncharacterized protein LOC111482383 OS=Cucurbita maxima OX=3661 GN=LOC111482383... [more]
A0A6J1F2W62.22e-18290.20ribonuclease P protein subunit p29 OS=Cucurbita moschata OX=3662 GN=LOC111441684... [more]
A0A1S3B6747.79e-15578.36Ribonuclease P protein subunit p29 OS=Cucumis melo OX=3656 GN=LOC103486457 PE=3 ... [more]
A0A1S3B6Y61.87e-15279.39uncharacterized protein LOC103486457 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A5A7TR231.87e-15279.39Ribonuclease P protein subunit p29 isoform X1 OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of Cp4.1LG03g01840 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G43190.16.1e-5743.67ribonuclease P family protein [more]
AT2G43190.31.8e-5644.00ribonuclease P family protein [more]
AT2G43190.21.8e-5644.00ribonuclease P family protein [more]
AT2G43190.45.9e-5244.32ribonuclease P family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 108..128
IPR002730Ribonuclease P protein subunit Rpp29/RNP1SMARTSM00538pop4_2coord: 286..377
e-value: 7.4E-18
score: 75.3
IPR002730Ribonuclease P protein subunit Rpp29/RNP1PFAMPF01868UPF0086coord: 291..366
e-value: 8.2E-20
score: 70.6
IPR036980Ribonuclease P/MRP subunit Rpp29 superfamilyGENE3D2.30.30.210Ribonuclease P/MRP, subunit p29coord: 286..381
e-value: 1.3E-23
score: 84.5
IPR016848Ribonuclease P/MRP subunit Rpp29PANTHERPTHR13348RIBONUCLEASE P SUBUNIT P29coord: 110..380
IPR023534Rof/RNase P-likeSUPERFAMILY101744Rof/RNase P subunit-likecoord: 289..380

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g01840.1Cp4.1LG03g01840.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process GO:0006364 rRNA processing
biological_process GO:0001682 tRNA 5'-leader removal
biological_process GO:0006396 RNA processing
biological_process GO:0008033 tRNA processing
cellular_component GO:0005730 nucleolus
cellular_component GO:0000172 ribonuclease MRP complex
cellular_component GO:0030677 ribonuclease P complex
molecular_function GO:0004526 ribonuclease P activity
molecular_function GO:0033204 ribonuclease P RNA binding
molecular_function GO:0003723 RNA binding