Cp4.1LG03g01510 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG03g01510
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionPolypeptide N-acetylgalactosaminyltransferase 35A
LocationCp4.1LG03: 1003042 .. 1005728 (+)
RNA-Seq ExpressionCp4.1LG03g01510
SyntenyCp4.1LG03g01510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGATTTAGATCCTCCAGAGTGAATGGGGAAATTCAAATTAATATTTTTTGATATTTATGGATGAAATTGCAATAGATATTAAGATTATAATTTTAAATTCATAAAAACGAGTTAAGAAAATAGATATTTAATTTGCCGGGTAACCTTATTAGCTTGGGTAGTTAGGGCGTTGGTGTACGTACTACTACTCAAAGGTCGGTAGGTTCAAATCTGGCGCCGATCATGTTCTGAACTTTTTTCTTTTTTTAACCCTTTTCGTTTAATCAATTTGGACGGTTTTGATCTTTATTTCTTTGACTCGGATTGGGTCAGATTCATCGAAGGCGCCAGTTCGTCGGAGTTGCGATCGTCTTCTTCTATCTTTTTGCTAATCGATTTGAAAATGGTAAATCCCTCAATTTCTTGCGATTGGTAGCTTGAAATTTTCTTTTACGCTTGTTTTTCGTTGGACTAGGTTTGCTTGGCGTGTTTGTTGCCTCTGTTTCTCATTCCAGTCGTCAACGCGCTGCCTGTTCTGTTCGATTTAATTATGGTACGCCCATATGATTCATTTCTCTTTTGGATCTCATCTTTTCGCCTGTTCATCAAATCGCCTTAAAGATTTCGGGTTTTCTGTGGTGTTGAAGGGAATTTTGTTAATATTCATCCTAATTTGCTGTTTTTTCTTTTGTTGTTTTTCTTGAATTTTCTCTTAGGGCAAAATTTATGGAATTTTTGGCTGGGAATACAGAAAACCACAGAGGGTACCGCCGGCTTGCCCCTATCGCCCTGCTGCCAAACAAAATAGCAATGTGAGTGGTCTGCTATCGTTTTTACTCTATTTGTGTTGTCTATTGGTCTTTTGAAGAAGTAATACACGGAACATTGGGGAAATGGATGAATTTGTGTTGAGAAATTGGATATGAATGGAGCGTGTGTCATGAAGAAGTTTAAGCTTTGATGGATTAATCTTCTTGTGCATATGCCTGGCTCATACACTATGGTGACGGTGAGAAAGGATATATATTGCATCCTGGAAGGGATATAATTGGAGATTCCATTTTTTGGTACAGAAGTTCCAATAGAAATAGGAAATACCCTACCCTTTGAGTGCAGTTTGAACTATTGACTACGTAATTAGAAGTAACCAATTAGGTTTATGATGAAACCTAGAAATCGATAGCTGATCCACTTTGAGTACCCCCACATGATAAGACCTCAACCAAAAATGGAAGAGTAACGACATCAGGTGATTGAGTTCAACAGTTCCTCATATAAAATTATTGACTCTAGAGATATATTGGTTAATTGTTTTCTCAAGAAGCCACTTTAATAGCATGGGCATACTGAGGAGATTGCCAGGATTGTGCATATTTACTTCATGAGACAACTAAATATGGATCATAATGTTGATTAAGTACGTGTGGCTAGTGTATTGGAATGCTAGGGTAGTGTCAAAAGAGCAATTACCTTACTTAAGAAAACTTCACTGAATCTGAAGTTGAGAGAGACTCTTCTCTTTGTTATGCCTCACGTTGTCTCCTTGCTTGCTCTTCAGCTCTCCAAGAGGAAAACCCGTTTTCCTTCCGCCTTTTAAATCGTTGTTATTAGGTTTTAGGACCTGCTAGGATCAATTTTTGTTAGTTGTAAACGAATAAATTAAAGATGACTTCTTTTGAATCGGATGACATCCCTCGATTTCTCCGCCATTTTTCTCTTCTCTACCTTAAGCGTGATAATTTTGGGAGCACCATATCCTTTTTAGCTTATGTATATACTCGAGCTGCAGCAGACGTCAGACATTTATCTTCTTGTGTAAAACGAGAAGTGCCTTCGTTTTGTTTTGCTTGTGTTTGTATTTTGTACTTGGGTGTTTTTTTTTGTCGGACTTCCTGACAGCGGATATGCGTGTGTTCTACACTGCACCTATCGTCTAGTGGTTTAATTCTTAAGTTTGCTCGTCTGGCTGGTTGAAGCAAGCTTTTTTTTAATCTTAATAGGTGGAGTTAGAACCTCTAGTTGATCAGCAACTCCCACCTCCAAAAGTCGTGGATGCCGTGGATGAGAAGCAAGACTGAATCTGGAAATTTCTGATGTACATACCTGTCAGCAAGATCAACAGATGTTTGTGGCCCTAGAAGCTGTGGACACTGTCGATTTTAGAAAGCTATGATTTCCAATCGGGTCAGACAAAAATATATTTTAAACTCTCATCGCTAATACTATCTATACAGTTATTTGTCAGTGCCTGCTTTCTGAATAACATCAATACCGACATTGTATGTATGCTTTCTAAATAATTTAGCTGGTTGGCTTGAATATGTTTTCCTTACTTGTAGTTAATTAATGCTCGTGGAATCTCTGGGAAGAAAAAATAAAATAAATTAGGCCTAAAAAAAGGCTTAACTAACAGATGCCTACTAACTCTTTTGTTCCCAAAAGAAATTTTGGCTGCCTTATCTGCCTTCATGTTAACGACTAAGATAGTGTTGTTTGTTACCCTCCTTTATATATACATATGGCCCATTGAGTGTATAGATTGCTAATTATGTCCTTTGAATTCCAAAATAGAAAATTAGTGTTTTAACCATGGTGGGGACAAATACTTGAATAGCATATTGTACTGAGCTTCTTGCCAGCTGTAGAAGTAGAAACTGAACGAAGTTGGTAGCATAGCTGCATGACAAATCATGATAAGAGAAAATAGG

mRNA sequence

AGATTTAGATCCTCCAGAGTGAATGGGGAAATTCAAATTAATATTTTTTGATATTTATGGATGAAATTGCAATAGATATTAAGATTATAATTTTAAATTCATAAAAACGAGTTAAGAAAATAGATATTTAATTTGCCGGGTAACCTTATTAGCTTGGGTAGTTAGGGCGTTGGTGTACGTACTACTACTCAAAGATTCATCGAAGGCGCCAGTTCGTCGGAGTTGCGATCGTCTTCTTCTATCTTTTTGCTAATCGATTTGAAAATGGTTTGCTTGGCGTGTTTGTTGCCTCTGTTTCTCATTCCAGTCGTCAACGCGCTGCCTGTTCTGTTCGATTTAATTATGGGCAAAATTTATGGAATTTTTGGCTGGGAATACAGAAAACCACAGAGGGTACCGCCGGCTTGCCCCTATCGCCCTGCTGCCAAACAAAATAGCAATGTGGAGTTAGAACCTCTAGTTGATCAGCAACTCCCACCTCCAAAAGTCGTGGATGCCGTGGATGAGAAGCAAGACTGAATCTGGAAATTTCTGATGTACATACCTGTCAGCAAGATCAACAGATGTTTGTGGCCCTAGAAGCTGTGGACACTGTCGATTTTAGAAAGCTATGATTTCCAATCGGGTCAGACAAAAATATATTTTAAACTCTCATCGCTAATACTATCTATACAGTTATTTGTCAGTGCCTGCTTTCTGAATAACATCAATACCGACATTGTATGTATGCTTTCTAAATAATTTAGCTGGTTGGCTTGAATATGTTTTCCTTACTTGTAGTTAATTAATGCTCGTGGAATCTCTGGGAAGAAAAAATAAAATAAATTAGGCCTAAAAAAAGGCTTAACTAACAGATGCCTACTAACTCTTTTGTTCCCAAAAGAAATTTTGGCTGCCTTATCTGCCTTCATGTTAACGACTAAGATAGTGTTGTTTGTTACCCTCCTTTATATATACATATGGCCCATTGAGTGTATAGATTGCTAATTATGTCCTTTGAATTCCAAAATAGAAAATTAGTGTTTTAACCATGGTGGGGACAAATACTTGAATAGCATATTGTACTGAGCTTCTTGCCAGCTGTAGAAGTAGAAACTGAACGAAGTTGGTAGCATAGCTGCATGACAAATCATGATAAGAGAAAATAGG

Coding sequence (CDS)

ATGGTTTGCTTGGCGTGTTTGTTGCCTCTGTTTCTCATTCCAGTCGTCAACGCGCTGCCTGTTCTGTTCGATTTAATTATGGGCAAAATTTATGGAATTTTTGGCTGGGAATACAGAAAACCACAGAGGGTACCGCCGGCTTGCCCCTATCGCCCTGCTGCCAAACAAAATAGCAATGTGGAGTTAGAACCTCTAGTTGATCAGCAACTCCCACCTCCAAAAGTCGTGGATGCCGTGGATGAGAAGCAAGACTGA

Protein sequence

MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNVELEPLVDQQLPPPKVVDAVDEKQD
Homology
[Close]
BLAST of Cp4.1LG03g01510 vs. NCBI nr
Match: KAG7017382.1 (hypothetical protein SDJN02_19247 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 164 bits (414), Expect = 9.96e-51
Identity = 82/84 (97.62%), Postives = 83/84 (98.81%), Query Frame = 0 

Query: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60
          MVCLACLLPLFLIPVVNALP+LFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV
Sbjct: 1  MVCLACLLPLFLIPVVNALPLLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60

Query: 61 ELEPLVDQQLPPPKVVDAVDEKQD 84
          ELEPLV QQLPPPKVVDAVDEKQD
Sbjct: 61 ELEPLVGQQLPPPKVVDAVDEKQD 84

[Close]
BLAST of Cp4.1LG03g01510 vs. NCBI nr
Match: XP_022935583.1 (uncharacterized protein LOC111442415 isoform X1 [Cucurbita moschata] >XP_022935584.1 uncharacterized protein LOC111442415 isoform X1 [Cucurbita moschata] >XP_022935587.1 uncharacterized protein LOC111442415 isoform X1 [Cucurbita moschata])

HSP 1 Score: 157 bits (396), Expect = 5.56e-48
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 0 

Query: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60
          MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSN 
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNA 60

Query: 61 ELEPLVDQQLPPPKVVDAVDEKQD 84
          ELEP   QQLPPPKVVDA+D+KQD
Sbjct: 61 ELEPPAGQQLPPPKVVDAMDDKQD 84

[Close]
BLAST of Cp4.1LG03g01510 vs. NCBI nr
Match: KAG6580623.1 (putative xyloglucan endotransglucosylase/hydrolase protein 32, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 164 bits (414), Expect = 3.73e-47
Identity = 82/84 (97.62%), Postives = 83/84 (98.81%), Query Frame = 0 

Query: 1   MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60
           MVCLACLLPLFLIPVVNALP+LFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV
Sbjct: 291 MVCLACLLPLFLIPVVNALPLLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 350

Query: 61  ELEPLVDQQLPPPKVVDAVDEKQD 84
           ELEPLV QQLPPPKVVDAVDEKQD
Sbjct: 351 ELEPLVGQQLPPPKVVDAVDEKQD 374

[Close]
BLAST of Cp4.1LG03g01510 vs. NCBI nr
Match: XP_022983172.1 (uncharacterized protein LOC111481805 [Cucurbita maxima])

HSP 1 Score: 153 bits (386), Expect = 1.71e-46
Identity = 79/84 (94.05%), Postives = 79/84 (94.05%), Query Frame = 0 

Query: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60
          MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60

Query: 61 ELEPLVDQQLPPPKVVDAVDEKQD 84
          ELEPL  QQLPPPKVVD   EKQD
Sbjct: 61 ELEPLAGQQLPPPKVVD---EKQD 81

[Close]
BLAST of Cp4.1LG03g01510 vs. NCBI nr
Match: XP_038903023.1 (uncharacterized protein LOC120089725 [Benincasa hispida])

HSP 1 Score: 153 bits (386), Expect = 1.87e-46
Identity = 77/84 (91.67%), Postives = 78/84 (92.86%), Query Frame = 0 

Query: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60
          MVCLACLLPLFLIPVVNALPVLF LIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60

Query: 61 ELEPLVDQQLPPPKVVDAVDEKQD 84
          +LEPL  QQ PPPK VDA DEKQD
Sbjct: 61 DLEPLAGQQHPPPKAVDAADEKQD 84

[Close]
BLAST of Cp4.1LG03g01510 vs. ExPASy TrEMBL
Match: A0A6J1F5U6 (uncharacterized protein LOC111442415 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442415 PE=4 SV=1)

HSP 1 Score: 157 bits (396), Expect = 2.69e-48
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 0 

Query: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60
          MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSN 
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNA 60

Query: 61 ELEPLVDQQLPPPKVVDAVDEKQD 84
          ELEP   QQLPPPKVVDA+D+KQD
Sbjct: 61 ELEPPAGQQLPPPKVVDAMDDKQD 84

[Close]
BLAST of Cp4.1LG03g01510 vs. ExPASy TrEMBL
Match: A0A6J1IYJ1 (uncharacterized protein LOC111481805 OS=Cucurbita maxima OX=3661 GN=LOC111481805 PE=4 SV=1)

HSP 1 Score: 153 bits (386), Expect = 8.27e-47
Identity = 79/84 (94.05%), Postives = 79/84 (94.05%), Query Frame = 0 

Query: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60
          MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60

Query: 61 ELEPLVDQQLPPPKVVDAVDEKQD 84
          ELEPL  QQLPPPKVVD   EKQD
Sbjct: 61 ELEPLAGQQLPPPKVVD---EKQD 81

[Close]
BLAST of Cp4.1LG03g01510 vs. ExPASy TrEMBL
Match: A0A0A0LB44 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G741830 PE=4 SV=1)

HSP 1 Score: 149 bits (375), Expect = 4.31e-45
Identity = 75/84 (89.29%), Postives = 78/84 (92.86%), Query Frame = 0 

Query: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60
          MVCLACLLPLFLIPVVNALPVLF LIMGKIYG+FGWEYRKPQ VPPACPYRPAAKQNSNV
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGLFGWEYRKPQVVPPACPYRPAAKQNSNV 60

Query: 61 ELEPLVDQQLPPPKVVDAVDEKQD 84
          ELEPL  QQ PPPK VDA+D+KQD
Sbjct: 61 ELEPLAGQQHPPPKPVDAMDDKQD 84

[Close]
BLAST of Cp4.1LG03g01510 vs. ExPASy TrEMBL
Match: A0A1S3B744 (uncharacterized protein LOC103486509 OS=Cucumis melo OX=3656 GN=LOC103486509 PE=4 SV=1)

HSP 1 Score: 149 bits (375), Expect = 4.31e-45
Identity = 75/84 (89.29%), Postives = 78/84 (92.86%), Query Frame = 0 

Query: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60
          MVCLACLLPLFLIPVVNALPVLF LIMGKIYG+FGWEYRKPQ VPPACPYRPAAKQNSNV
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGLFGWEYRKPQVVPPACPYRPAAKQNSNV 60

Query: 61 ELEPLVDQQLPPPKVVDAVDEKQD 84
          ELEPL  QQ PPPK VDA+D+KQD
Sbjct: 61 ELEPLAGQQHPPPKPVDAMDDKQD 84

[Close]
BLAST of Cp4.1LG03g01510 vs. ExPASy TrEMBL
Match: A0A6J1CU80 (uncharacterized protein LOC111014385 OS=Momordica charantia OX=3673 GN=LOC111014385 PE=4 SV=1)

HSP 1 Score: 142 bits (359), Expect = 1.19e-42
Identity = 72/84 (85.71%), Postives = 75/84 (89.29%), Query Frame = 0 

Query: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60
          MVCLACLLPLFLIPVVNALPVLF LIMGKIYG+FGWEYRKP+RVPPACPYRPAAKQN NV
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGLFGWEYRKPERVPPACPYRPAAKQNGNV 60

Query: 61 ELEPLVDQQLPPPKVVDAVDEKQD 84
          ELEP   QQ P PK VDAVD K+D
Sbjct: 61 ELEPQAGQQHPLPKAVDAVDTKED 84

[Close]
BLAST of Cp4.1LG03g01510 vs. TAIR 10
Match: AT5G03460.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 80.9 bits (198), Expect = 5.5e-16
Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = 0 

Query: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNS 59
          MVC+ CL+PLFL+P++N +P + D  M K+Y   GWEYRKP RVPPACP++P AK ++
Sbjct: 1  MVCVMCLVPLFLVPLINLMPRIIDYFMAKLYAWLGWEYRKPARVPPACPFKPVAKNDN 58

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g01510 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g01510 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7017382.19.96e-5197.62hypothetical protein SDJN02_19247 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022935583.15.56e-4892.86uncharacterized protein LOC111442415 isoform X1 [Cucurbita moschata] >XP_0229355... [more]
KAG6580623.13.73e-4797.62putative xyloglucan endotransglucosylase/hydrolase protein 32, partial [Cucurbit... [more]
XP_022983172.11.71e-4694.05uncharacterized protein LOC111481805 [Cucurbita maxima][more]
XP_038903023.11.87e-4691.67uncharacterized protein LOC120089725 [Benincasa hispida][more]
BLAST of Cp4.1LG03g01510 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1F5U62.69e-4892.86uncharacterized protein LOC111442415 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1IYJ18.27e-4794.05uncharacterized protein LOC111481805 OS=Cucurbita maxima OX=3661 GN=LOC111481805... [more]
A0A0A0LB444.31e-4589.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G741830 PE=4 SV=1[more]
A0A1S3B7444.31e-4589.29uncharacterized protein LOC103486509 OS=Cucumis melo OX=3656 GN=LOC103486509 PE=... [more]
A0A6J1CU801.19e-4285.71uncharacterized protein LOC111014385 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
BLAST of Cp4.1LG03g01510 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G03460.15.5e-1656.90unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37756TRANSMEMBRANE PROTEINcoord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g01510.1Cp4.1LG03g01510.1mRNA