Cp4.1LG02g17160 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g17160
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Autophagy-related 2
Location	Cp4.1LG02: 12425332 .. 12425631 (-)
RNA-Seq Expression	Cp4.1LG02g17160
Synteny	Cp4.1LG02g17160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTCTTTATAATGTGATTTGAATGTCGATAGGGGTCGGAACAATCTAGCGTCAATGTGGCTTCATCACCTCCGTTTTATTGCGGATCTCCGCCGAGCAGGGCTTCCAATCCATTAATCCAGGATGCGCGGTTTAGAGATGAGAAACTCAGTAGTCCTATGCCAGTATTGGCTGCAGCAGCATACTCCCCATTGAGTCTCTCATCGCCATCATCGGCGACAGCGACGGGGTCGCACAAAGGGGGAGGAGGAGGGTGTGCGAGAATGACGTTCGGTCTAAAACCGGCTGCAGTTAGA

mRNA sequence

ATGAATGGGTCGGAACAATCTAGCGTCAATGTGGCTTCATCACCTCCGTTTTATTGCGGATCTCCGCCGAGCAGGGCTTCCAATCCATTAATCCAGGATGCGCGGTTTAGAGATGAGAAACTCAGTAGTCCTATGCCAGTATTGGCTGCAGCAGCATACTCCCCATTGAGTCTCTCATCGCCATCATCGGCGACAGCGACGGGGTCGCACAAAGGGGGAGGAGGAGGGTGTGCGAGAATGACGTTCGGTCTAAAACCGGCTGCAGTTAGA

Coding sequence (CDS)

ATGAATGGGTCGGAACAATCTAGCGTCAATGTGGCTTCATCACCTCCGTTTTATTGCGGATCTCCGCCGAGCAGGGCTTCCAATCCATTAATCCAGGATGCGCGGTTTAGAGATGAGAAACTCAGTAGTCCTATGCCAGTATTGGCTGCAGCAGCATACTCCCCATTGAGTCTCTCATCGCCATCATCGGCGACAGCGACGGGGTCGCACAAAGGGGGAGGAGGAGGGTGTGCGAGAATGACGTTCGGTCTAAAACCGGCTGCAGTTAGA

Protein sequence

MNGSEQSSVNVASSPPFYCGSPPSRASNPLIQDARFRDEKLSSPMPVLAAAAYSPLSLSSPSSATATGSHKGGGGGCARMTFGLKPAAVR

Homology

[Close]

BLAST of Cp4.1LG02g17160 vs. NCBI nr
Match: XP_023524595.1 (uncharacterized protein LOC111788490 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 167 bits (423), Expect = 1.19e-50
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 3   GSEQSSVNVASSPPFYCGSPPSRASNPLIQDARFRDEKLSSPMPVLAAAAYSPLSLSSPS 62
           GSEQSSVNVASSPPFYCGSPPSRASNPLIQDARFRDEKLSSPMPVLAAAAYSPLSLSSPS
Sbjct: 74  GSEQSSVNVASSPPFYCGSPPSRASNPLIQDARFRDEKLSSPMPVLAAAAYSPLSLSSPS 133

Query: 63  SATATGSHKGGGGGCARMTFGLKPAAVR 90
           SATATGSHKGGGGGCARMTFGLKPAAVR
Sbjct: 134 SATATGSHKGGGGGCARMTFGLKPAAVR 161

[Close]

BLAST of Cp4.1LG02g17160 vs. NCBI nr
Match: KAG7036732.1 (hypothetical protein SDJN02_00352, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 159 bits (402), Expect = 1.75e-48
Identity = 85/90 (94.44%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 1  MNGSEQSSVNVASSPPFYCGSPPSRASNPLIQDARFRDEKLSSPMPVLAAAAYSPLSLSS 60
          MNGSEQSS+NVASSPPFYCGSPPSRASNPLIQDA+FRDEKLSSPMPVLAAAAYSPLSLSS
Sbjct: 1  MNGSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLAAAAYSPLSLSS 60

Query: 61 PSSATATGSHKGGGGGCARMTFGLKPAAVR 90
          PSSA   GSHKGGGGGCARMTFGLKPAAVR
Sbjct: 61 PSSA---GSHKGGGGGCARMTFGLKPAAVR 87

[Close]

BLAST of Cp4.1LG02g17160 vs. NCBI nr
Match: XP_022997677.1 (uncharacterized protein LOC111492569 [Cucurbita maxima])

HSP 1 Score: 156 bits (395), Expect = 1.84e-46
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 3   GSEQSSVNVASSPPFYCGSPPSRASNPLIQDARFRDEKLSSPMPVLAAAAYSPLSLSSPS 62
           GSEQSS+NVASSPPFYCGSPPSRASNPLIQDARFRDEKLSSPMPVLAAAAYSPLSLSSPS
Sbjct: 74  GSEQSSINVASSPPFYCGSPPSRASNPLIQDARFRDEKLSSPMPVLAAAAYSPLSLSSPS 133

Query: 63  SATATGSHKGGGGGCARMTFGLKPAAVR 90
           SA   GSHKGGGGGCARMTFGLKPAAVR
Sbjct: 134 SA---GSHKGGGGGCARMTFGLKPAAVR 158

[Close]

BLAST of Cp4.1LG02g17160 vs. NCBI nr
Match: XP_022948961.1 (uncharacterized protein LOC111452452 [Cucurbita moschata])

HSP 1 Score: 148 bits (373), Expect = 4.05e-43
Identity = 81/88 (92.05%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 3   GSEQSSVNVASSPPFYCGSPPSRASNPLIQDARFRDEKLSSPMPVLAAAAYSPLSLSSPS 62
           GSEQSS+NVASSPPFYCGSPPSRASNPLIQDA+FRDEKLSSPMPVLAAAAYSPLSLSSPS
Sbjct: 74  GSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLAAAAYSPLSLSSPS 133

Query: 63  SATATGSHKGGGGGCARMTFGLKPAAVR 90
           SA   GSHKGGGG  ARMTFGLKPAAVR
Sbjct: 134 SA---GSHKGGGGCAARMTFGLKPAAVR 158

[Close]

BLAST of Cp4.1LG02g17160 vs. NCBI nr
Match: KAG6607033.1 (hypothetical protein SDJN03_00375, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 155 bits (391), Expect = 2.50e-42
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 3   GSEQSSVNVASSPPFYCGSPPSRASNPLIQDARFRDEKLSSPMPVLAAAAYSPLSLSSPS 62
           GSEQSS+NVASSPPFYCGSPPSRASNPLIQDA+FRDEKLSSPMPVLAAAAYSPLSLSSPS
Sbjct: 443 GSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLAAAAYSPLSLSSPS 502

Query: 63  SATATGSHKGGGGGCARMTFGLKPAAVR 90
           SA   GSHKGGGGGCARMTFGLKPAAVR
Sbjct: 503 SA---GSHKGGGGGCARMTFGLKPAAVR 527

[Close]

BLAST of Cp4.1LG02g17160 vs. ExPASy TrEMBL
Match: A0A6J1K5S1 (uncharacterized protein LOC111492569 OS=Cucurbita maxima OX=3661 GN=LOC111492569 PE=4 SV=1)

HSP 1 Score: 156 bits (395), Expect = 8.92e-47
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 3   GSEQSSVNVASSPPFYCGSPPSRASNPLIQDARFRDEKLSSPMPVLAAAAYSPLSLSSPS 62
           GSEQSS+NVASSPPFYCGSPPSRASNPLIQDARFRDEKLSSPMPVLAAAAYSPLSLSSPS
Sbjct: 74  GSEQSSINVASSPPFYCGSPPSRASNPLIQDARFRDEKLSSPMPVLAAAAYSPLSLSSPS 133

Query: 63  SATATGSHKGGGGGCARMTFGLKPAAVR 90
           SA   GSHKGGGGGCARMTFGLKPAAVR
Sbjct: 134 SA---GSHKGGGGGCARMTFGLKPAAVR 158

[Close]

BLAST of Cp4.1LG02g17160 vs. ExPASy TrEMBL
Match: A0A6J1GAN1 (uncharacterized protein LOC111452452 OS=Cucurbita moschata OX=3662 GN=LOC111452452 PE=4 SV=1)

HSP 1 Score: 148 bits (373), Expect = 1.96e-43
Identity = 81/88 (92.05%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 3   GSEQSSVNVASSPPFYCGSPPSRASNPLIQDARFRDEKLSSPMPVLAAAAYSPLSLSSPS 62
           GSEQSS+NVASSPPFYCGSPPSRASNPLIQDA+FRDEKLSSPMPVLAAAAYSPLSLSSPS
Sbjct: 74  GSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLAAAAYSPLSLSSPS 133

Query: 63  SATATGSHKGGGGGCARMTFGLKPAAVR 90
           SA   GSHKGGGG  ARMTFGLKPAAVR
Sbjct: 134 SA---GSHKGGGGCAARMTFGLKPAAVR 158

[Close]

BLAST of Cp4.1LG02g17160 vs. ExPASy TrEMBL
Match: A0A6J1D4M2 (uncharacterized protein LOC111016920 OS=Momordica charantia OX=3673 GN=LOC111016920 PE=4 SV=1)

HSP 1 Score: 112 bits (281), Expect = 1.69e-29
Identity = 67/88 (76.14%), Postives = 73/88 (82.95%), Query Frame = 0


Query: 3   GSEQSSVNVASSPPFYCGSPPSRASNPLIQDARFRDEKLSSPMPVLAAAAYSPLSLSSPS 62
           GSEQSS +VASSPPFY GSPPSRASNPLIQDARF DEKLS+ MP L  A YSP  LSSPS
Sbjct: 74  GSEQSSGHVASSPPFYSGSPPSRASNPLIQDARFGDEKLST-MPALPPA-YSPSGLSSPS 133

Query: 63  SATATGSHKGGGGGCARMTFGLKPAAVR 90
           S +++ +HKGGG  CARM FGLKPAAVR
Sbjct: 134 STSSSSAHKGGG--CARMKFGLKPAAVR 157

[Close]

BLAST of Cp4.1LG02g17160 vs. ExPASy TrEMBL
Match: A0A0A0L9U7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G280930 PE=4 SV=1)

HSP 1 Score: 111 bits (278), Expect = 4.42e-29
Identity = 68/88 (77.27%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 3   GSEQSSVNVASSPPFYCGSPPSRASNPLIQDARFRDEKLSSPMPVLAAAAYSPLSLSSPS 62
           GSEQSS +VASSPPF+ GSPPSRASNPLIQDARF DEKLS PMP L A  YSP  LSSPS
Sbjct: 74  GSEQSSAHVASSPPFFSGSPPSRASNPLIQDARFGDEKLS-PMPALPA--YSPSGLSSPS 133

Query: 63  SATATGSHKGGGGGCARMTFGLKPAAVR 90
           SA++   HKGGG  CARM FGLKPAAVR
Sbjct: 134 SASSA--HKGGG--CARMKFGLKPAAVR 154

[Close]

BLAST of Cp4.1LG02g17160 vs. ExPASy TrEMBL
Match: A0A1S3CF27 (uncharacterized protein LOC103500158 OS=Cucumis melo OX=3656 GN=LOC103500158 PE=4 SV=1)

HSP 1 Score: 110 bits (275), Expect = 1.26e-28
Identity = 68/88 (77.27%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 3   GSEQSSVNVASSPPFYCGSPPSRASNPLIQDARFRDEKLSSPMPVLAAAAYSPLSLSSPS 62
           GSEQSS +VASSPPF+ GSPPSRASNPLIQDARF DEKLS PMP L A  YSP  LSSPS
Sbjct: 74  GSEQSSAHVASSPPFFSGSPPSRASNPLIQDARFGDEKLS-PMPGLPA--YSPSGLSSPS 133

Query: 63  SATATGSHKGGGGGCARMTFGLKPAAVR 90
           SA++   HKGGG  CARM FGLKPAAVR
Sbjct: 134 SASSA--HKGGG--CARMKFGLKPAAVR 154

[Close]

BLAST of Cp4.1LG02g17160 vs. TAIR 10
Match: AT5G16110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02555.1); Has 133 Blast hits to 133 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 6.1e-13
Identity = 42/81 (51.85%), Postives = 53/81 (65.43%), Query Frame = 0


Query: 11  VASSPPFYCGSPPSRASNPLIQDARFRDEKLSSPMPVLA-AAAYSPLSLSSPSSATATGS 70
           ++SSPP++ GSPPSRA+NPL QDARFRDEKL+   P       YS     SPSS++++ S
Sbjct: 148 LSSSPPYFPGSPPSRAANPLAQDARFRDEKLNPISPNSPFLQPYSATGFPSPSSSSSSSS 207

Query: 71  HKGGGGGCARMTFGLKPAAVR 91
            +    GC RM FGL   AVR
Sbjct: 208 SR----GCVRMKFGLNSPAVR 224

[Close]

BLAST of Cp4.1LG02g17160 vs. TAIR 10
Match: AT3G02555.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16110.1); Has 130 Blast hits to 130 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 2.0e-11
Identity = 41/77 (53.25%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 14  SPPFYCGSPPSRASNPLIQDARFRDEKLSSPMPVLAAAAYSPLSLSSPSSATATGSHKGG 73
           SPPF+ GSPPSRA+NPL QDARF DEKL++  P L     SPL    PS++         
Sbjct: 81  SPPFFLGSPPSRAANPLAQDARFGDEKLNTVSPSL-----SPL---LPSASRVK------ 140

Query: 74  GGGCARMTFGLKPAAVR 91
             GC RM FG+KPA VR
Sbjct: 141 -SGCGRMKFGVKPATVR 142

[Close]

BLAST of Cp4.1LG02g17160 vs. TAIR 10
Match: AT1G68490.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.4 bits (137), Expect = 6.9e-09
Identity = 37/85 (43.53%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 3   GSEQSSVNVASSP-PFYCGSPPSRASNPLIQDARFRDEKLSSPMPVLAAAAYSPLSLSSP 62
           G+EQ +  V  SP PF CGSPPSR +NPL QDARFRDE       +++ ++  P  L  P
Sbjct: 83  GAEQVNKQVIDSPSPFLCGSPPSRVANPLTQDARFRDE-------IVSVSSVIPPQLGLP 142

Query: 63  SSATATGSHKGGGGGCARMTFGLKP 87
            S++ + S    GG   R  FG  P
Sbjct: 143 PSSSPSSSSGRKGGCVVRGNFGNSP 160

[Close]

BLAST of Cp4.1LG02g17160 vs. TAIR 10
Match: AT1G13390.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68490.1); Has 114 Blast hits to 114 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 1.4e-04
Identity = 29/66 (43.94%), Postives = 37/66 (56.06%), Query Frame = 0


Query: 3   GSEQSSVNVASSPP-FYCGSPPSRASNPLIQDARFRDEKL--SSPMPVLAAAAYSPLSLS 62
           G EQ       +PP F+ GSPPSR SNPL +D+ FR+E L  +SP P    A   P   S
Sbjct: 78  GGEQDQTRTVMTPPLFFTGSPPSRVSNPLTKDSLFREELLMVASPSPSTPRAT-KPQPPS 137

Query: 63  SPSSAT 66
           SP + +
Sbjct: 138 SPRNGS 142

[Close]

BLAST of Cp4.1LG02g17160 vs. TAIR 10
Match: AT1G13390.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68490.1); Has 114 Blast hits to 114 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 1.4e-04
Identity = 29/66 (43.94%), Postives = 37/66 (56.06%), Query Frame = 0


Query: 3   GSEQSSVNVASSPP-FYCGSPPSRASNPLIQDARFRDEKL--SSPMPVLAAAAYSPLSLS 62
           G EQ       +PP F+ GSPPSR SNPL +D+ FR+E L  +SP P    A   P   S
Sbjct: 78  GGEQDQTRTVMTPPLFFTGSPPSRVSNPLTKDSLFREELLMVASPSPSTPRAT-KPQPPS 137

Query: 63  SPSSAT 66
           SP + +
Sbjct: 138 SPRNGS 142

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g17160 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g17160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023524595.1	1.19e-50	100.00	uncharacterized protein LOC111788490 [Cucurbita pepo subsp. pepo]	[more]
KAG7036732.1	1.75e-48	94.44	hypothetical protein SDJN02_00352, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022997677.1	1.84e-46	95.45	uncharacterized protein LOC111492569 [Cucurbita maxima]	[more]
XP_022948961.1	4.05e-43	92.05	uncharacterized protein LOC111452452 [Cucurbita moschata]	[more]
KAG6607033.1	2.50e-42	94.32	hypothetical protein SDJN03_00375, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cp4.1LG02g17160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K5S1	8.92e-47	95.45	uncharacterized protein LOC111492569 OS=Cucurbita maxima OX=3661 GN=LOC111492569...	[more]
A0A6J1GAN1	1.96e-43	92.05	uncharacterized protein LOC111452452 OS=Cucurbita moschata OX=3662 GN=LOC1114524...	[more]
A0A6J1D4M2	1.69e-29	76.14	uncharacterized protein LOC111016920 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A0A0L9U7	4.42e-29	77.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G280930 PE=4 SV=1	[more]
A0A1S3CF27	1.26e-28	77.27	uncharacterized protein LOC103500158 OS=Cucumis melo OX=3656 GN=LOC103500158 PE=...	[more]

BLAST of Cp4.1LG02g17160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G16110.1	6.1e-13	51.85	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G02555.1	2.0e-11	53.25	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G68490.1	6.9e-09	43.53	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G13390.1	1.4e-04	43.94	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G13390.2	1.4e-04	43.94	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	PANTHER	PTHR33384:SF30	BNAC02G06400D PROTEIN	coord: 3..90
None	No IPR available	PANTHER	PTHR33384	EXPRESSED PROTEIN	coord: 3..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g17160.1	Cp4.1LG02g17160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane