Cp4.1LG02g16700 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g16700
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	plastid movement impaired 2
Location	Cp4.1LG02: 12592463 .. 12593333 (-)
RNA-Seq Expression	Cp4.1LG02g16700
Synteny	Cp4.1LG02g16700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAATGCTATGGGAAGAGGATCAAGAAGAAGCAAGAGAACAGCAAAAGTGATGAAAATCAATGGCGAAACCTTCAAGATAAGAACACCAACCACAGCCTCCCAAGTCACCACCCACCATCCAAATCACCTCCTCTATGACTCCCAATCCATCACCCAACTCGGCCTCCGAGCCAAGCCTTTGGACCCTCATCACCAGCTCAAACCTAAGACCCTCTACTTCCTCCTCCACCTGCCCCCTCTCCCCGGTAGCCATCGCCCCTTGTCGCGTGTGCGCTCCGACCTTTGCTCGTCTGCCTCCGACCGCCTCGAGTGTCTTATGCTCTCTCGTCGATCGCTCTCCGACCTCCAATCCTTTCGGTTGGATCCCGATGGGATGTCGACTGCCTCTCGCCCTACTGGACCCGTGCAGATCAAGCTTCGAGTGCCGAGGGAAGAATTTGAGAGGCTGATGAAGGAAAGTAAGAGCAAGGTAGAGGCAGTGGAGAGGATTGTCGACTTGTGGAAAACGGGTGGCATGTGTAGTGGTCAAGCGCGTGAGGTGCGTTTTCTAGCCGTTCTCGATGATAAAATTCTAATAGCTTTTTGAATTTGCATATACAAACAAATTGGGTTGGGTTTAAGAAATCTTTTAAACTAACTCTAGTTAGGTTGATGACAACAACTCTGAGTTCACAAATTAATCCTCGATTTTTGGGTTTTCTTTTTTTTTAATCATTTAAAAATATTTTACTTAACCACCGTACATGTTAGGTAATCTGGGTTGGTCAACCGGAAAATATTTTGAGATAGTTAGGTTGATGACCCGAACCAACTGTAATATTTCAACTCCAAAATTGAACCCGAAACCTTTATGATAGGTAATCTAG

mRNA sequence

ATGGGAAATGCTATGGGAAGAGGATCAAGAAGAAGCAAGAGAACAGCAAAAGTGATGAAAATCAATGGCGAAACCTTCAAGATAAGAACACCAACCACAGCCTCCCAAGTCACCACCCACCATCCAAATCACCTCCTCTATGACTCCCAATCCATCACCCAACTCGGCCTCCGAGCCAAGCCTTTGGACCCTCATCACCAGCTCAAACCTAAGACCCTCTACTTCCTCCTCCACCTGCCCCCTCTCCCCGGTAGCCATCGCCCCTTGTCGCGTGTGCGCTCCGACCTTTGCTCGTCTGCCTCCGACCGCCTCGAGTGTCTTATGCTCTCTCGTCGATCGCTCTCCGACCTCCAATCCTTTCGGTTGGATCCCGATGGGATGTCGACTGCCTCTCGCCCTACTGGACCCGTGCAGATCAAGCTTCGAGTGCCGAGGGAAGAATTTGAGAGGCTGATGAAGGAAAGTAAGAGCAAGGTAGAGGCAGTGGAGAGGATTGTCGACTTGTGGAAAACGGGTGGCATGTGTAGTGGTCAAGCGCGTGAGGTAATCTAG

Coding sequence (CDS)

ATGGGAAATGCTATGGGAAGAGGATCAAGAAGAAGCAAGAGAACAGCAAAAGTGATGAAAATCAATGGCGAAACCTTCAAGATAAGAACACCAACCACAGCCTCCCAAGTCACCACCCACCATCCAAATCACCTCCTCTATGACTCCCAATCCATCACCCAACTCGGCCTCCGAGCCAAGCCTTTGGACCCTCATCACCAGCTCAAACCTAAGACCCTCTACTTCCTCCTCCACCTGCCCCCTCTCCCCGGTAGCCATCGCCCCTTGTCGCGTGTGCGCTCCGACCTTTGCTCGTCTGCCTCCGACCGCCTCGAGTGTCTTATGCTCTCTCGTCGATCGCTCTCCGACCTCCAATCCTTTCGGTTGGATCCCGATGGGATGTCGACTGCCTCTCGCCCTACTGGACCCGTGCAGATCAAGCTTCGAGTGCCGAGGGAAGAATTTGAGAGGCTGATGAAGGAAAGTAAGAGCAAGGTAGAGGCAGTGGAGAGGATTGTCGACTTGTGGAAAACGGGTGGCATGTGTAGTGGTCAAGCGCGTGAGGTAATCTAG

Protein sequence

MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTASQVTTHHPNHLLYDSQSITQLGLRAKPLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSLSDLQSFRLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAVERIVDLWKTGGMCSGQAREVI

Homology

[Close]

BLAST of Cp4.1LG02g16700 vs. ExPASy Swiss-Prot
Match: Q6NLC8 (Uncharacterized protein At1g66480 OS=Arabidopsis thaliana OX=3702 GN=At1g66480 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-26
Identity = 72/175 (41.14%), Postives = 108/175 (61.71%), Query Frame = 0


Query: 5   MGRGSRRSKRTAKVMKINGETFKIRTPTTASQVTTHHPNHLLYDSQSITQLGLRAKPLDP 64
           MG      ++ AKVMKI+GETF+I+TP TA +VT  +P ++L DSQ++   G+R+KPL+P
Sbjct: 1   MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEP 60

Query: 65  HHQLKPKTLYFLLHLPPLP--------GSHRPLSRVRSDLCSSASDRLECLMLSRRSLSD 124
           +  LKPK  YFL+ LP LP         +  P  RV S +   A +RL+ LMLSRR++SD
Sbjct: 61  NQTLKPKKTYFLVELPKLPPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRRTVSD 120

Query: 125 LQSFRLD-PDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAV-ERIVDLW 170
           +   R D  DG      P G   ++LR+PR +  +LM+E+ +   A+ E+I+ ++
Sbjct: 121 VTIGRSDGGDGFGPELGP-GHTSVRLRLPRSQITKLMEENNNDASAIAEKILGIY 174

[Close]

BLAST of Cp4.1LG02g16700 vs. NCBI nr
Match: XP_023524596.1 (uncharacterized protein At1g66480-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 360 bits (925), Expect = 2.84e-125
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTASQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTASQVTTHHPNHLLYDSQSITQLGLRAK
Sbjct: 1   MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTASQVTTHHPNHLLYDSQSITQLGLRAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSLSDLQSF 120
           PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSLSDLQSF
Sbjct: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSLSDLQSF 120

Query: 121 RLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAVERIVDLWKTGGMCSGQAR 180
           RLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAVERIVDLWKTGGMCSGQAR
Sbjct: 121 RLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAVERIVDLWKTGGMCSGQAR 180

Query: 181 EV 182
           EV
Sbjct: 181 EV 182

[Close]

BLAST of Cp4.1LG02g16700 vs. NCBI nr
Match: XP_022998216.1 (uncharacterized protein At1g66480-like [Cucurbita maxima])

HSP 1 Score: 353 bits (906), Expect = 1.75e-122
Identity = 178/181 (98.34%), Postives = 178/181 (98.34%), Query Frame = 0


Query: 1   MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTASQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTA QVTTHHPNHLLYDSQSI QLGLRAK
Sbjct: 1   MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSINQLGLRAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSLSDLQSF 120
           PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSLSDLQSF
Sbjct: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSLSDLQSF 120

Query: 121 RLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAVERIVDLWKTGGMCSGQAR 180
           RLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEA ERIVDLWKTGGMCSGQAR
Sbjct: 121 RLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLWKTGGMCSGQAR 180

[Close]

BLAST of Cp4.1LG02g16700 vs. NCBI nr
Match: KAG6607003.1 (hypothetical protein SDJN03_00345, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 351 bits (900), Expect = 1.84e-121
Identity = 177/182 (97.25%), Postives = 178/182 (97.80%), Query Frame = 0


Query: 1   MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTASQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGNAMG GSRRSKRTAKVMKINGETFKIRTPTTA QVTTHHPNHLLYDSQSITQLGLRAK
Sbjct: 1   MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSLSDLQSF 120
           PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRS+SDLQSF
Sbjct: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSVSDLQSF 120

Query: 121 RLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAVERIVDLWKTGGMCSGQAR 180
           RLDPDGMSTA RPTGPVQIKLRVPREEFERLMKESKSKVEA ERIVDLWKTGGMCSGQAR
Sbjct: 121 RLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLWKTGGMCSGQAR 180

Query: 181 EV 182
           EV
Sbjct: 181 EV 182

[Close]

BLAST of Cp4.1LG02g16700 vs. NCBI nr
Match: KAG7036702.1 (hypothetical protein SDJN02_00322, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 349 bits (896), Expect = 5.46e-121
Identity = 176/181 (97.24%), Postives = 177/181 (97.79%), Query Frame = 0


Query: 1   MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTASQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGNAMG GSRRSKRTAKVMKINGETFKIRTPTTA QVTTHHPNHLLYDSQSITQLGLRAK
Sbjct: 1   MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSLSDLQSF 120
           PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRS+SDLQSF
Sbjct: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSVSDLQSF 120

Query: 121 RLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAVERIVDLWKTGGMCSGQAR 180
           RLDPDGMSTA RPTGPVQIKLRVPREEFERLMKESKSKVEA ERIVDLWKTGGMCSGQAR
Sbjct: 121 RLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLWKTGGMCSGQAR 180

[Close]

BLAST of Cp4.1LG02g16700 vs. NCBI nr
Match: XP_022948507.1 (uncharacterized protein At1g66480-like [Cucurbita moschata])

HSP 1 Score: 349 bits (896), Expect = 5.86e-121
Identity = 176/181 (97.24%), Postives = 177/181 (97.79%), Query Frame = 0


Query: 1   MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTASQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGNAMG GSRRSKRTAKVMKINGETFKIRTPTTA QVTTHHPNHLLYDSQSITQLGLRAK
Sbjct: 1   MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSLSDLQSF 120
           PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRS+SDLQSF
Sbjct: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSVSDLQSF 120

Query: 121 RLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAVERIVDLWKTGGMCSGQAR 180
           RLDPDGMSTA RPTGPVQIKLRVPREEFERLMKESKSKVEA ERIVDLWKTGGMCSGQAR
Sbjct: 121 RLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLWKTGGMCSGQAR 180

[Close]

BLAST of Cp4.1LG02g16700 vs. ExPASy TrEMBL
Match: A0A6J1K9N3 (uncharacterized protein At1g66480-like OS=Cucurbita maxima OX=3661 GN=LOC111492930 PE=4 SV=1)

HSP 1 Score: 353 bits (906), Expect = 8.48e-123
Identity = 178/181 (98.34%), Postives = 178/181 (98.34%), Query Frame = 0


Query: 1   MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTASQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTA QVTTHHPNHLLYDSQSI QLGLRAK
Sbjct: 1   MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSINQLGLRAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSLSDLQSF 120
           PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSLSDLQSF
Sbjct: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSLSDLQSF 120

Query: 121 RLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAVERIVDLWKTGGMCSGQAR 180
           RLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEA ERIVDLWKTGGMCSGQAR
Sbjct: 121 RLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLWKTGGMCSGQAR 180

[Close]

BLAST of Cp4.1LG02g16700 vs. ExPASy TrEMBL
Match: A0A6J1G9F9 (uncharacterized protein At1g66480-like OS=Cucurbita moschata OX=3662 GN=LOC111452165 PE=4 SV=1)

HSP 1 Score: 349 bits (896), Expect = 2.84e-121
Identity = 176/181 (97.24%), Postives = 177/181 (97.79%), Query Frame = 0


Query: 1   MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTASQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGNAMG GSRRSKRTAKVMKINGETFKIRTPTTA QVTTHHPNHLLYDSQSITQLGLRAK
Sbjct: 1   MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSLSDLQSF 120
           PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRS+SDLQSF
Sbjct: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSVSDLQSF 120

Query: 121 RLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAVERIVDLWKTGGMCSGQAR 180
           RLDPDGMSTA RPTGPVQIKLRVPREEFERLMKESKSKVEA ERIVDLWKTGGMCSGQAR
Sbjct: 121 RLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLWKTGGMCSGQAR 180

[Close]

BLAST of Cp4.1LG02g16700 vs. ExPASy TrEMBL
Match: A0A0A0L7W0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G368690 PE=4 SV=1)

HSP 1 Score: 216 bits (551), Expect = 1.31e-68
Identity = 120/197 (60.91%), Postives = 138/197 (70.05%), Query Frame = 0


Query: 1   MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTASQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGNA+GRGSRR KRT KVMKINGET KI  PTTA +VT+H+P+HLLY+S+S+   GLRAK
Sbjct: 1   MGNAIGRGSRRKKRTTKVMKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCS-SASDRLECLMLSRRSLSDLQS 120
           PLDPH  L+PKTLYFLL LP LP  H  L R  SDL + SASDRLECL+LSRRSLSDLQ+
Sbjct: 61  PLDPHCHLEPKTLYFLLQLPTLPRDHCSLRRTCSDLHNLSASDRLECLLLSRRSLSDLQT 120

Query: 121 FRLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAVERIVD------------ 179
            R DP   ST      PVQ+K ++PR EFERLMKE K+KVE  +RIVD            
Sbjct: 121 LRFDPQRSSTDDGAAKPVQVKFQLPRAEFERLMKECKNKVEVTKRIVDYCARSRDNVYGN 180

[Close]

BLAST of Cp4.1LG02g16700 vs. ExPASy TrEMBL
Match: A0A5A7V2M4 (Putative Encodes a protein whose expression is responsive to nematode infection OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00470 PE=4 SV=1)

HSP 1 Score: 187 bits (475), Expect = 1.53e-57
Identity = 97/149 (65.10%), Postives = 113/149 (75.84%), Query Frame = 0


Query: 19  MKINGETFKIRTPTTASQVTTHHPNHLLYDSQSITQLGLRAKPLDPHHQLKPKTLYFLLH 78
           MKINGETFKI  PTTA +VT+H+PNHLLY+S+S+ Q GLRAKPLDPH QL+PKTLYFLL 
Sbjct: 1   MKINGETFKITLPTTAYEVTSHYPNHLLYESKSLNQFGLRAKPLDPHCQLRPKTLYFLLQ 60

Query: 79  LPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSLSDLQSFRLDPDGMSTASRPTGPVQ 138
           LP L G  R L R  SDL  SASDRLECL+LSRRS+SDLQ+ R DP   S        VQ
Sbjct: 61  LPTLYGVDRSLRRTCSDLHLSASDRLECLLLSRRSVSDLQTLRFDPQRSSIHDGAAKSVQ 120

Query: 139 IKLRVPREEFERLMKESKSKVEAVERIVD 167
           +K ++PR EFERLMKE K+ VE  ++IVD
Sbjct: 121 VKFQLPRAEFERLMKECKNNVEVTKKIVD 149

[Close]

BLAST of Cp4.1LG02g16700 vs. ExPASy TrEMBL
Match: A0A1S3C4W5 (uncharacterized protein At1g66480 OS=Cucumis melo OX=3656 GN=LOC103496878 PE=4 SV=1)

HSP 1 Score: 185 bits (469), Expect = 1.25e-56
Identity = 96/149 (64.43%), Postives = 112/149 (75.17%), Query Frame = 0


Query: 19  MKINGETFKIRTPTTASQVTTHHPNHLLYDSQSITQLGLRAKPLDPHHQLKPKTLYFLLH 78
           MKINGETFKI  PTTA +VT+H+PNHLLY+S+S+ Q GLRAKPLDPH QL+PKTLYFLL 
Sbjct: 1   MKINGETFKITLPTTAYEVTSHYPNHLLYESKSLNQFGLRAKPLDPHCQLRPKTLYFLLQ 60

Query: 79  LPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSLSDLQSFRLDPDGMSTASRPTGPVQ 138
           LP L G  R L R  SDL  SASDRLECL+LSRRS+SDLQ+ R DP            VQ
Sbjct: 61  LPTLYGVDRSLRRTCSDLHLSASDRLECLLLSRRSVSDLQTLRFDPQRSLIHDGAAKSVQ 120

Query: 139 IKLRVPREEFERLMKESKSKVEAVERIVD 167
           +K ++PR EFERLMKE K+ VE  ++IVD
Sbjct: 121 VKFQLPRAEFERLMKECKNNVEVTKKIVD 149

[Close]

BLAST of Cp4.1LG02g16700 vs. TAIR 10
Match: AT2G01340.1 (Encodes a protein whose expression is responsive to nematode infection. )

HSP 1 Score: 125.9 bits (315), Expect = 3.2e-29
Identity = 74/169 (43.79%), Postives = 105/169 (62.13%), Query Frame = 0


Query: 1   MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTASQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGN++G      K+T KVMKI+GETFK++TP TA +V    P H+L DS+S+   G RAK
Sbjct: 1   MGNSLG-----GKKTTKVMKIDGETFKLKTPVTAEEVLKDFPGHVLLDSESVKHYGARAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSLSDLQSF 120
           PL+   +L+ K LYF++     P    P  RVRS +  SA +RLE LML+RRS SDL S 
Sbjct: 61  PLEAKQRLEAKRLYFVVE----PVKECPPRRVRSGIHVSAKERLESLMLARRSSSDL-SI 120

Query: 121 RLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAVERIVDLW 170
              P G +T        ++K+R+P+ E E+L+KE  ++ EA ++I  L+
Sbjct: 121 LKPPGGWTTEEEEGAVRRVKVRIPKAELEKLVKEGATEAEATQKIAALF 159

[Close]

BLAST of Cp4.1LG02g16700 vs. TAIR 10
Match: AT1G66480.1 (plastid movement impaired 2 )

HSP 1 Score: 121.3 bits (303), Expect = 8.0e-28
Identity = 72/175 (41.14%), Postives = 108/175 (61.71%), Query Frame = 0


Query: 5   MGRGSRRSKRTAKVMKINGETFKIRTPTTASQVTTHHPNHLLYDSQSITQLGLRAKPLDP 64
           MG      ++ AKVMKI+GETF+I+TP TA +VT  +P ++L DSQ++   G+R+KPL+P
Sbjct: 1   MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEP 60

Query: 65  HHQLKPKTLYFLLHLPPLP--------GSHRPLSRVRSDLCSSASDRLECLMLSRRSLSD 124
           +  LKPK  YFL+ LP LP         +  P  RV S +   A +RL+ LMLSRR++SD
Sbjct: 61  NQTLKPKKTYFLVELPKLPPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRRTVSD 120

Query: 125 LQSFRLD-PDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAV-ERIVDLW 170
           +   R D  DG      P G   ++LR+PR +  +LM+E+ +   A+ E+I+ ++
Sbjct: 121 VTIGRSDGGDGFGPELGP-GHTSVRLRLPRSQITKLMEENNNDASAIAEKILGIY 174

[Close]

BLAST of Cp4.1LG02g16700 vs. TAIR 10
Match: AT5G37840.1 (BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 113.6 bits (283), Expect = 1.7e-25
Identity = 69/178 (38.76%), Postives = 108/178 (60.67%), Query Frame = 0


Query: 5   MGRGSRRSKRTAKVMKINGETFKIRTPTTASQVTTHHPNHLLYDSQSITQLGLRAKPLDP 64
           MG      +   KVMKI+G+ F+++TP TAS  T  +P  +L DS+++ +LG+RAKPL+P
Sbjct: 1   MGNTIMVRRNKVKVMKIDGDIFRLKTPVTASDATKEYPGFVLLDSETVKRLGVRAKPLEP 60

Query: 65  HHQLKPKTLYFLLHLPPLPGSHR-PLSRVRS-DLCSSASDRLECLMLSRRSLSDLQSFRL 124
           +  LKP   YFL+ LPP+   ++ P  RV S ++   A +RLE LMLSRR++SD+ + R 
Sbjct: 61  NQILKPNHTYFLVDLPPVDKRNKLPYRRVMSGNIHVGAKERLEMLMLSRRTVSDVGAARS 120

Query: 125 DPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAVERIVDLW--KTGGMCSGQ 179
           D  G        G  +++LR+PR +  +LM+ES    E   +I+  +   +GG+  G+
Sbjct: 121 DVVG---DGPELGHTRVRLRLPRSQITKLMEESHDASEVAAKIISAYMESSGGIQGGR 175

[Close]

BLAST of Cp4.1LG02g16700 vs. TAIR 10
Match: AT1G71015.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01340.1); Has 85 Blast hits to 85 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 112.8 bits (281), Expect = 2.8e-25
Identity = 68/168 (40.48%), Postives = 103/168 (61.31%), Query Frame = 0


Query: 1   MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTASQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGN++G     +K+TA +M INGE+FK++TP  A  V    P H+L +S+++ +LG+RAK
Sbjct: 1   MGNSLG-----TKKTATIMNINGESFKLKTPVEAGTVVKDFPGHVLLESEAVKRLGIRAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSLSDLQSF 120
           PL+PH  L+ K +YF++ LP       P  RVRS +  SA +RLE L LSRRS SDL   
Sbjct: 61  PLEPHQNLESKRIYFMVELPRTWKERTP-RRVRSGIQMSAKERLENLKLSRRSSSDLSVM 120

Query: 121 RLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAVERIVDL 169
           +   + ++   R      +KL++P+ + E+L KES+S  +   +I  L
Sbjct: 121 KKKTE-VNDEEREVS--SVKLKLPKWKIEKLRKESESGSDFSNKITQL 159

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g16700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NLC8	1.1e-26	41.14	Uncharacterized protein At1g66480 OS=Arabidopsis thaliana OX=3702 GN=At1g66480 P...	[more]

BLAST of Cp4.1LG02g16700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023524596.1	2.84e-125	100.00	uncharacterized protein At1g66480-like [Cucurbita pepo subsp. pepo]	[more]
XP_022998216.1	1.75e-122	98.34	uncharacterized protein At1g66480-like [Cucurbita maxima]	[more]
KAG6607003.1	1.84e-121	97.25	hypothetical protein SDJN03_00345, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7036702.1	5.46e-121	97.24	hypothetical protein SDJN02_00322, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022948507.1	5.86e-121	97.24	uncharacterized protein At1g66480-like [Cucurbita moschata]	[more]

BLAST of Cp4.1LG02g16700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K9N3	8.48e-123	98.34	uncharacterized protein At1g66480-like OS=Cucurbita maxima OX=3661 GN=LOC1114929...	[more]
A0A6J1G9F9	2.84e-121	97.24	uncharacterized protein At1g66480-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A0A0L7W0	1.31e-68	60.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G368690 PE=4 SV=1	[more]
A0A5A7V2M4	1.53e-57	65.10	Putative Encodes a protein whose expression is responsive to nematode infection ...	[more]
A0A1S3C4W5	1.25e-56	64.43	uncharacterized protein At1g66480 OS=Cucumis melo OX=3656 GN=LOC103496878 PE=4 S...	[more]

BLAST of Cp4.1LG02g16700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01340.1	3.2e-29	43.79	Encodes a protein whose expression is responsive to nematode infection.	[more]
AT1G66480.1	8.0e-28	41.14	plastid movement impaired 2	[more]
AT5G37840.1	1.7e-25	38.76	BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT...	[more]
AT1G71015.1	2.8e-25	40.48	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 145..165
None	No IPR available	PANTHER	PTHR33148:SF3	PLASTID MOVEMENT IMPAIRED PROTEIN	coord: 1..170
None	No IPR available	PANTHER	PTHR33148	PLASTID MOVEMENT IMPAIRED PROTEIN-RELATED	coord: 1..170
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 1..111 e-value: 5.6E-20 score: 72.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g16700.1	Cp4.1LG02g16700.1	mRNA