Cp4.1LG02g16600 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g16600
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG02: 12830008 .. 12835821 (+)
RNA-Seq Expression	Cp4.1LG02g16600
Synteny	Cp4.1LG02g16600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCCAATCCACAGCAGCCGCCGGGAAGCTCCATTCTCAGATCATCAAAGCCGGCTTCGACAAAGCTGGCCCTCTCCCCAACACCCTTCTAGATGTATACGGCAAATGCGGCCTCATTCCTCAAGCCCTCCAACTGTTCGACGAAATGCCCCACAGAGACCATGTCTCCTGGGCCTCGATTCTCACCGCCCATAACCGAGCCATTCTTCCCCGACGTACCCTTTCAATGCTTAGCATCATGTTTACGCGTGATGGGTTGCAGCCTGATCACTTTGTCTTCGCCTGCATTGTCAGTGCCTGCGCCAGTTTGGGGTATTTGCGGCTTGGTAAGCAAGTTCATGCTCGGTTTATGTTGTCTTCCTTTTGTGATGATGAGGTTGTTAAGTCGTCTTTGATTGATATGTATGCTAAATGTGGGATGCCCGATGATGCTCGTGCTGTTTTTGATTCAATCTTGTTTAAGAATTCTGTTTCTTGGACTGCTATGATTTCTGGGTATGCTAAATCTGGGAGGAAATCTGATGCTATTGAGCTTTTTCAGCGAGTTCCTGTGAGAAACTTGTTCTCTTGGACTGCTTTGATTTCTGGGTTGATTCAAAGTGGGAATGGAATTTACTCGTTTTCTTTGTTTAATGAGATGAGGAGAGAAGGAATTGATGTTGTAGACCCTTTAGTTTTTTCGAGTGTTGTTGGAGCTTGTGCAAATTTGGCTCTTCTGGAACTTGGAAAGCAAATGCATGGCTTGGTTATAGCTATTGGTTTTGAATCTTGTTTGTTTATAAGCAATACACTTGTGGATATGTATGCTAAATGTAGTGACATATTAGCAGCTAAAGATATCTTTTACAAAATGCCACGAAAAGATGTGATTTCTTGGACTTCAATCATAGTTGGGACTGCTCAACATGGGAAAGCAGAGGAGGCATTGAGTTTATATGATGAAATGGTTTTGAGTGGAATAAAGCCAAATGAAGTGACCTTCGTAGGATTACTTTATGCTTGCAGTCATGTTGGTCTAGTTACCAAAGGCCGTGAATTATTTAGGTCTATGACAGCTGATTATAAGATCAATCCTTCTCTCCAGCACTACACATGTTTATTAGATCTCCTGAGTCGCTCAGGACACCTTGAAGAGGCAGAGAATCTACTAAACAAAATGCCATTTAAACCAGATGAGCCTACTTGGGCTTCTCTATTGAGTGCATGCAAGCGACATAATAACATGGAAATGGGAGTTCGAATTGCTGATCATGTCTTGGATTTAAAACCCGAAGATCCTTCGACTTACGTACTCTTGTCGAACGTTTACGCCGGAGCGGGAATGTGGGAAAGTGTTTCAAAGGTGAGAAGGTTGATGAGTTGTATGGAAGTAAGGAAGGAACCAGGTTATAGTAGCATAGACTTTGGAAAGGAGAGCCAAGTATTTCATGCTGGGGAGACTAATCATCCTATGAAGGATGAGATTTTTCATTTACTGAAGGATTTAGATGCTGAAATGAGGAGAAGAGGCTATGTTCCTAACACTAGCTTTGTTTTGCATGACATGGTACAACAAGAGAAGGAGAAGCAGCTGTTTTGGCACAGTGAGAGGTTGGCTATGGCTTATGGACTTCTCAAGGCTGTTCCGGGGACGGTTATTCGAATCGTGAAAAATCTTCGGATTTGTGGAGATTGTCATAATGTTTTGAAATTCACTAGTGATATAGTGAAAAGGGAGATTGTTGTTCGTGATGCCACGAGATATCATCATTTCAAGGACGGGAAATGTTCTTGCAATGATTTTTGGTGACTCCGTGGGATACTCTTCTACTTAGCTCGAGAATTCTCTGGCCGGAAAAAGGTATGAACTGGTGGAGTTTTTAGAAGCACTTTTCTGCATTTTCTGCATCTCTTCCAATTTATTGATAACAAAAGTAGAGAAATGATCAAAATATTTGTGTAACTTAGACCAAAAAGAAGCAATATTGTTGTACAATTGCTCTTATATCTATACAATTTCCTCGCACATCCTTGAATATTTTGTTGTCCCTTTTTATCCTTGGAACAGCTCTTGAGGTCTTCTTCTATAAGGATCTTTGCCTCTCCTTTAAGAAAATTTTACGGGTTATAATTGAAGATATCATTGTTCTGTTACGGTTTGAACTATTGATTTACGTAATTGGAAGTAACCAATTAAGTTTACGACGAAACCTAAAAAATTCTAGATTGTGAGATCCCACCTCGGTTGGAGAGGGGAACAAAACAAATGGTGTGGAAAACAATCCCACCTCGGTTGGAGAGGGGAACGAAACATTTTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAATCGTGAGGTTGATGGCAATACGTAACAGGCCAAAGTGGACAATATCTGCTGGCGGTGGGCTTGGGCTGTTACAAATGGTATCAGAACCAGACACCAGGCGGTGTGCCAACGAAGATGCTAGACCCTGAAGGAGGTGGATTGTGAGATCTCACTTCGGTTGGAGAGGAATGAAACATTCCTTATAAAGTGTGGTAACCTCTTATAAAGGTGTGGTAACCTCTCCCTAAAAGAGGTATTTTAAAAACCTTTCGGGAAAGTGTGGTAACCTCTTATAAAGGTGTGGTAACCTCTCCCTAAAAGAGGTATTTTAAAAACCTTACGGGGAAGCCTAGAAAGGAAAATCCAAAGAAGACCATATCTTCTTATATTATGTTTTGTAATTTCGTTATCCAAATTTTTCAATTTCGAATTTATATTTTTCCGATGGAGTTATATTTAAATTATGTGTTTCCAAATGTCAATCCATCAACTAACAGACTGAGATATTATTTATGTATTAAATAATTGAAAGAAATTTAAAACTGGAAAGCATAGGATTAAACAGAGAATTTTTAACCCATCTTTTACAACACTTCCATAAAGAGGCAAATCAAAGAAGATAAAATCAAGGGGTTGGGAGGCAAAATGATAAATACAGCTCCAGAAACATTGGAAGATTACATGATCAAAGACATGAAAAACATATGCTTATCTTTAGTAAGGATGGTGTCTATGTTTCCGTCGAGAACCGGGTGACTTGATAACTAGAGTGCTCGAGATCCAAGATCGATTAGTTTCGCAAGAATCGTCTGAAGACCAACAACATAAACGTCCATCTTCTCCGCCCGTCCATCCAAACACACCTTGGCTACGTGAAAATCCACCCAATATGTTTGTCATGGGCAAGACACTTCTTACGATGCCAATGTGGCCACCCTCAAGGACAACGTCGGGTGATTCAATCGCAGTCTTCCCCTTATGATGGTCGACCGGGAAGTAGCCTACCGTACCATCGTTGGTACCTCCTAGAACCCATAATCTATCACCTTCACTCGAGTAGTGACAATCAACTAAATAATCAACCTGCCAAACAAGGAAGCATGGAAACTTTCAAGAACTGCATGAACCATTCACTCCGACGAGCAATAATCGAAATCTTTAAATTGAAAGAGCAATTCCGACTAGCAATAATCGAAATCTTTGAATTGAAAAAGCAAGTAAAATCTGGTCTAAGTAATCATCTCAAGACATTAGAAAGGTAACGATAAGTTTAAGATCCTATTAGATACTCTTTAAAGTTCTAGGACTATATAAACATAAATCTAAAAGTTCATCACACGTTATCGTCGTCAAGTGCCGGTGACATAAGTTCATTGATAAATGAAAAAGAGAGACGAGATAGAAAAACTCACATGACCCATTGTCCAACTGTTGGAAGCTAGTGTGCGGGCATCTGTGATATCTGCCTCATTTCTCCCATCCGTCCAGTCCCATAAGCTACCATAGCCCATTTGCATAAAACTTCACCATTAGATAACTAGAAAAGCAACTCAGAAGATAAAGTTTTCAATTGTGAAAGGGAAAGAAAATGAAAGCTATGAGAAGCAAATTCAACCAAGAACGCACAAGTATCACAGGGCCTAAAAGTTTTGCAAGCAAGAAAGAATTGCAAATCCTCACGGAGGGAAGAAATAGCTACAATTCATTTAACTTAGTTGCACTGATGGTGTGTAGAAAAGAAGATTGGTACCTCAAGGTTTCAATGTGAGTCAAGCACCACAACTTTCTATAGTTCTCTCCAAAGAATCCGATCTTACCAACTGAAGTTCCAACGTTTATCACCTGCATGATCACGAGGGTAACACTCTAATAAAATATCTGTAGAATTGAGCTTGAAAACCCACTTAAGAAATCTCTTACTTAGAATTCAAGTTAAAATAAAATAACAAATCAGTCACCCGAACTGCAAGGATTTGTAGGAGAGTAGTGGTTAGTCAAACTGAAATTCGATTCTTAAAATTTATATAAAGGAAGTACAATTGTAACAACTCAAGCCCACCGCTAGTAGATATTGTCCTCTTTGGACTTTCCTTTCCAGGTTTCCCCTCGAGGTTTTAAAACGCGTCAACTAGGGAGAGGTTTCCACACCCTTATAAGGAATGTTTCGTTCCCCTTTCCAACCGATGTGGGATCTCACAACAATAAAATATAATCATGCTTACTCTTCCCGTTAAAATAGAGTCATTAAATGGGCCAATGGATTAGTCACCATGAAGAACTCCAATAATGCTACAGCATTCTAGGTTTGCAAGCAAAGAATGTGCACCTAAAATAATAGGCTTTTTTTTTTCTATATTCGTGAGTGTTCGGACCAACTTGCGTGCACCCCAACAAAGTAGTAGACATTTATTCAAGCAAATCAGCTCAATCAGGAAAGTATTCTATGCAAATAACATTGAGATAATAGTGGGTACGTACAGAATCCATATGTTCGTCATCATCGATGTCCCCATTAGTGTCAAATATACAAACCAAACCATCCACGGAAGCAGAAGCAAGCTTGGCTTGATGGCCAGGGATAAAGTGAACCTGTTAACAAGAGCAAAATTGGATAACATGAGTTATACTACCACCAACAGAATTCAACCAAACAAAAAGGATCCCCAGGAAACGGAGTACTACAAAAGAGCGGTGGATTTAAGCCAAGTTGAATGACCACGATTTCTTGTAACTATATCTAATTGTAAAATATTATATCATAAGAACCCAGAAGTAACAAATCCCTAATTGTCAGAACATGCAGTTCTCAATTCTTTTCTATAACCACTATAGCTTTTGTACAGAAGTTTTTATATTCTAACATGTTTTTCTAAAGAAAATCGAAAGCATCCGTTACATCTCTAGTTATTATTTATTTGAGACTGCTATTCACTTAAATCTAATAGGGAATGCTAGACACACCATCATGGCAGCCTCTAAGAGCTCTACCCTTCTCTTGATCGTTATTTCAGTAGTCGATAACTTGAATTGATCGTTATTTCAGTAGTCGATAACTTGAATATCATTGCTAACAAGCAAAGTGATTTTGCACATCATTGCTATGCAAATTCAACAATCAAACTATTTCCTAGAAAGAATATGATTCTCAAAAGCTAGTGATTGTTAGAAATGCATCCTACTTTTTATGAGGACGGGAAACAATTTTCAATTTTGAGGAAAAACCATCTGCACAAAAGCCCGAATCTGACAAAAATACCGATGTCTAAACAATTTCCATGGCAATCACATATTATCTTAAGTTGAACAGGTACATGATTACTTTTTAAAATTGAAGCAATTGCTAAGTATAATCAAAATTATAATCACTAGATACAAGATACATTGCTCAAGCATCAGGAAGAACCTGAGTGACATCTTCCACATGAGAGTCCTCCAAGCACGCGACTTGCTTTCTGTTCCTCCAATCCCAGAAGAGTATCTGAGCAACATAACCAAA

mRNA sequence

CGCCAATCCACAGCAGCCGCCGGGAAGCTCCATTCTCAGATCATCAAAGCCGGCTTCGACAAAGCTGGCCCTCTCCCCAACACCCTTCTAGATGTATACGGCAAATGCGGCCTCATTCCTCAAGCCCTCCAACTGTTCGACGAAATGCCCCACAGAGACCATGTCTCCTGGGCCTCGATTCTCACCGCCCATAACCGAGCCATTCTTCCCCGACGTACCCTTTCAATGCTTAGCATCATGTTTACGCGTGATGGGTTGCAGCCTGATCACTTTGTCTTCGCCTGCATTGTCAGTGCCTGCGCCAGTTTGGGGTATTTGCGGCTTGGTAAGCAAATGAGGAGAGAAGGAATTGATGTTGTAGACCCTTTAGTTTTTTCGAGTGTTGTTGGAGCTTGTGCAAATTTGGCTCTTCTGGAACTTGGAAAGCAAATGCATGGCTTGGTTATAGCTATTGGTTTTGAATCTTGTTTGTTTATAAGCAATACACTTGTGGATATGTATGCTAAATGTAGATGGTGTCTATGTTTCCGTCGAGAACCGGGTGACTTGATAACTAGAGTGCTCGAGATCCAAGATCGATTAGTTTCGCAAGAATCGTCTGAAGACCAACAACATAAACGTCCATCTTCTCCGCCCGTCCATCCAAACACACCTTGGCTACGTGAAAATCCACCCAATATGTTTGTCATGGGCAAGACACTTCTTACGATGCCAATGTGGCCACCCTCAAGGACAACGTCGGGTGATTCAATCGCAGGAAAGAAAATGAAAGCTATGAGAAGCAAATTCAACCAAGAACGCACAAGTATCACAGGGCCTAAAAGTTTTGCAAGCAAGAAAGAATTGCAAATCCTCACGGAGGGAAGAAATAGCTACAATTCATTTAACTTAGTTGCACTGATGGTGTGTAGAAAAGAAGATTGGTACCTCAAGGTTTCAATAATCCATATGTTCGTCATCATCGATGTCCCCATTAGTGTCAAATATACAAACCAAACCATCCACGGAAGCAGAAGCAAGCTTGGCTTGATGGCCAGGGATAAAGTGAACCTGTTAACAAGAGCAAAATTGGATAACATGAGTTATACTACCACCAACAGAATTCAACCAAACAAAAAGGATCCCCAGGAAACGGAGTACTACAAAAGAGCGGTACATGATTACTTTTTAAAATTGAAGCAATTGCTAAGTATAATCAAAATTATAATCACTAGATACAAGATACATTGCTCAAGCATCAGGAAGAACCTGAGTGACATCTTCCACATGAGAGTCCTCCAAGCACGCGACTTGCTTTCTGTTCCTCCAATCCCAGAAGAGTATCTGAGCAACATAACCAAA

Coding sequence (CDS)

CGCCAATCCACAGCAGCCGCCGGGAAGCTCCATTCTCAGATCATCAAAGCCGGCTTCGACAAAGCTGGCCCTCTCCCCAACACCCTTCTAGATGTATACGGCAAATGCGGCCTCATTCCTCAAGCCCTCCAACTGTTCGACGAAATGCCCCACAGAGACCATGTCTCCTGGGCCTCGATTCTCACCGCCCATAACCGAGCCATTCTTCCCCGACGTACCCTTTCAATGCTTAGCATCATGTTTACGCGTGATGGGTTGCAGCCTGATCACTTTGTCTTCGCCTGCATTGTCAGTGCCTGCGCCAGTTTGGGGTATTTGCGGCTTGGTAAGCAAATGAGGAGAGAAGGAATTGATGTTGTAGACCCTTTAGTTTTTTCGAGTGTTGTTGGAGCTTGTGCAAATTTGGCTCTTCTGGAACTTGGAAAGCAAATGCATGGCTTGGTTATAGCTATTGGTTTTGAATCTTGTTTGTTTATAAGCAATACACTTGTGGATATGTATGCTAAATGTAGATGGTGTCTATGTTTCCGTCGAGAACCGGGTGACTTGATAACTAGAGTGCTCGAGATCCAAGATCGATTAGTTTCGCAAGAATCGTCTGAAGACCAACAACATAAACGTCCATCTTCTCCGCCCGTCCATCCAAACACACCTTGGCTACGTGAAAATCCACCCAATATGTTTGTCATGGGCAAGACACTTCTTACGATGCCAATGTGGCCACCCTCAAGGACAACGTCGGGTGATTCAATCGCAGGAAAGAAAATGAAAGCTATGAGAAGCAAATTCAACCAAGAACGCACAAGTATCACAGGGCCTAAAAGTTTTGCAAGCAAGAAAGAATTGCAAATCCTCACGGAGGGAAGAAATAGCTACAATTCATTTAACTTAGTTGCACTGATGGTGTGTAGAAAAGAAGATTGGTACCTCAAGGTTTCAATAATCCATATGTTCGTCATCATCGATGTCCCCATTAGTGTCAAATATACAAACCAAACCATCCACGGAAGCAGAAGCAAGCTTGGCTTGATGGCCAGGGATAAAGTGAACCTGTTAACAAGAGCAAAATTGGATAACATGAGTTATACTACCACCAACAGAATTCAACCAAACAAAAAGGATCCCCAGGAAACGGAGTACTACAAAAGAGCGGTACATGATTACTTTTTAAAATTGAAGCAATTGCTAAGTATAATCAAAATTATAATCACTAGATACAAGATACATTGCTCAAGCATCAGGAAGAACCTGAGTGACATCTTCCACATGAGAGTCCTCCAAGCACGCGACTTGCTTTCTGTTCCTCCAATCCCAGAAGAGTATCTGAGCAACATAACCAAA

Protein sequence

RQSTAAAGKLHSQIIKAGFDKAGPLPNTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASILTAHNRAILPRRTLSMLSIMFTRDGLQPDHFVFACIVSACASLGYLRLGKQMRREGIDVVDPLVFSSVVGACANLALLELGKQMHGLVIAIGFESCLFISNTLVDMYAKCRWCLCFRREPGDLITRVLEIQDRLVSQESSEDQQHKRPSSPPVHPNTPWLRENPPNMFVMGKTLLTMPMWPPSRTTSGDSIAGKKMKAMRSKFNQERTSITGPKSFASKKELQILTEGRNSYNSFNLVALMVCRKEDWYLKVSIIHMFVIIDVPISVKYTNQTIHGSRSKLGLMARDKVNLLTRAKLDNMSYTTTNRIQPNKKDPQETEYYKRAVHDYFLKLKQLLSIIKIIITRYKIHCSSIRKNLSDIFHMRVLQARDLLSVPPIPEEYLSNITK

Homology

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BLAST of Cp4.1LG02g16600 vs. ExPASy Swiss-Prot
Match: O23266 (Pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H13 PE=1 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 2.3e-41
Identity = 99/270 (36.67%), Postives = 131/270 (48.52%), Query Frame = 0


Query: 2   QSTAAAGKLHSQIIKAGFDKAGPLPNTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASIL 61
           ++   A  LH+ I+K G  +  PL NTL++VYGKCG    ALQ+FDEMPHRDH++WAS+L
Sbjct: 17  RTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVL 76

Query: 62  TAHNRAILPRRTLSMLSIMFTRDGLQPDHFVFACIVSACASLGYLRLGKQ---------- 121
           TA N+A L  +TLS+ S + +  GL+PD FVF+ +V ACA+LG +  G+Q          
Sbjct: 77  TALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEY 136

Query: 122 ------------------------------------------------------------ 171
                                                                       
Sbjct: 137 ANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRI 196

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BLAST of Cp4.1LG02g16600 vs. ExPASy Swiss-Prot
Match: O23169 (Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H5 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.4e-17
Identity = 51/162 (31.48%), Postives = 84/162 (51.85%), Query Frame = 0


Query: 9   KLHSQIIKAGFDKAGPLPNTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASILTAHNRAI 68
           ++H  I++AG D    L ++L+D+YGKCG I +A  +FD++  +D VSW S++  + ++ 
Sbjct: 239 EIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSS 298

Query: 69  LPRRTLSMLSIMFTRDGLQPDHFVFACIVSACASLGYLRLGKQMRREGIDVVDPLVFSSV 128
             R   S+                F+ +V +C                 +  +   F+ V
Sbjct: 299 RWREGFSL----------------FSELVGSC-----------------ERPNEYTFAGV 358

Query: 129 VGACANLALLELGKQMHGLVIAIGFESCLFISNTLVDMYAKC 171
           + ACA+L   ELGKQ+HG +  +GF+   F S++LVDMY KC
Sbjct: 359 LNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKC 367

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BLAST of Cp4.1LG02g16600 vs. ExPASy Swiss-Prot
Match: Q9FXA9 (Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E64 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.0e-16
Identity = 54/184 (29.35%), Postives = 88/184 (47.83%), Query Frame = 0


Query: 3   STAAAGKLHSQIIKAGFDKAGPLPNTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASILT 62
           S     ++H+ +IK GF    P+ N++LD+Y +CG + +A   F EM  +D ++W ++++
Sbjct: 228 SVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLIS 287

Query: 63  AHNRAILPRRTLSMLSIMFTRDGLQPDHFVFACIVSACASLGYLRLGKQMRREGIDVVDP 122
                 L R   S   +MF R   +   FV  C                           
Sbjct: 288 E-----LERSDSSEALLMFQR--FESQGFVPNC--------------------------- 347

Query: 123 LVFSSVVGACANLALLELGKQMHGLVIAIGFESCLFISNTLVDMYAKCRWCLCFRREPGD 182
             F+S+V ACAN+A L  G+Q+HG +   GF   + ++N L+DMYAKC      +R  G+
Sbjct: 348 YTFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGE 377

Query: 183 LITR 187
           ++ R
Sbjct: 408 IVDR 377

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BLAST of Cp4.1LG02g16600 vs. ExPASy Swiss-Prot
Match: Q9SY02 (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.7e-16
Identity = 51/144 (35.42%), Postives = 73/144 (50.69%), Query Frame = 0


Query: 27  NTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASILTAHNRAILPRRTLSMLSIMFTRDGL 86
           NT++  Y +CG I +A  LFD+MP RD VSWA+++  ++                     
Sbjct: 347 NTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYS--------------------- 406

Query: 87  QPDHFVFACIVSACASLGYLRLGKQMRREGIDVVDPLVFSSVVGACANLALLELGKQMHG 146
           Q  H           S   LRL  QM REG   ++   FSS +  CA++  LELGKQ+HG
Sbjct: 407 QSGH-----------SFEALRLFVQMEREG-GRLNRSSFSSALSTCADVVALELGKQLHG 457

Query: 147 LVIAIGFESCLFISNTLVDMYAKC 171
            ++  G+E+  F+ N L+ MY KC
Sbjct: 467 RLVKGGYETGCFVGNALLLMYCKC 457

[Close]

BLAST of Cp4.1LG02g16600 vs. ExPASy Swiss-Prot
Match: Q9LYV3 (Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H89 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 7.5e-16
Identity = 49/162 (30.25%), Postives = 79/162 (48.77%), Query Frame = 0


Query: 9   KLHSQIIKAGFDKAGPLPNTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASILTAHNRAI 68
           +LH  ++K GFD    + N L+DVY KC  +  A++LF E+  ++ VSW +++  +    
Sbjct: 369 QLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLG 428

Query: 69  LPRRTLSMLSIMFTRDGLQPDHFVFACIVSACASLGYLRLGKQMRREGIDVVDPLVFSSV 128
              +  SM                                 ++  R  + V + + FSS 
Sbjct: 429 EGGKAFSMF--------------------------------REALRNQVSVTE-VTFSSA 488

Query: 129 VGACANLALLELGKQMHGLVIAIGFESCLFISNTLVDMYAKC 171
           +GACA+LA ++LG Q+HGL I       + +SN+L+DMYAKC
Sbjct: 489 LGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKC 497

[Close]

BLAST of Cp4.1LG02g16600 vs. NCBI nr
Match: XP_023523455.1 (pentatricopeptide repeat-containing protein At4g14050, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 304 bits (779), Expect = 2.37e-93
Identity = 170/271 (62.73%), Postives = 170/271 (62.73%), Query Frame = 0


Query: 1   RQSTAAAGKLHSQIIKAGFDKAGPLPNTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASI 60
           RQSTAAAGKLHSQIIKAGFDKAGPLPNTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASI
Sbjct: 16  RQSTAAAGKLHSQIIKAGFDKAGPLPNTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASI 75

Query: 61  LTAHNRAILPRRTLSMLSIMFTRDGLQPDHFVFACIVSACASLGYLRLGKQ--------- 120
           LTAHNRAILPRRTLSMLSIMFTRDGLQPDHFVFACIVSACASLGYLRLGKQ         
Sbjct: 76  LTAHNRAILPRRTLSMLSIMFTRDGLQPDHFVFACIVSACASLGYLRLGKQVHARFMLSS 135

Query: 121 ------------------------------------------------------------ 170
                                                                       
Sbjct: 136 FCDDEVVKSSLIDMYAKCGMPDDARAVFDSILFKNSVSWTAMISGYAKSGRKSDAIELFQ 195

[Close]

BLAST of Cp4.1LG02g16600 vs. NCBI nr
Match: XP_022948359.1 (pentatricopeptide repeat-containing protein At4g14050, mitochondrial [Cucurbita moschata])

HSP 1 Score: 297 bits (760), Expect = 1.56e-90
Identity = 167/271 (61.62%), Postives = 167/271 (61.62%), Query Frame = 0


Query: 1   RQSTAAAGKLHSQIIKAGFDKAGPLPNTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASI 60
           RQSTAAAGKLHSQIIKAG DKAGPL NTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASI
Sbjct: 16  RQSTAAAGKLHSQIIKAGLDKAGPLANTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASI 75

Query: 61  LTAHNRAILPRRTLSMLSIMFTRDGLQPDHFVFACIVSACASLGYLRLGKQ--------- 120
           LTAHNRAILPRRTLSMLSIMFT DGLQPDHFVFACIVSACASLGYLRLGKQ         
Sbjct: 76  LTAHNRAILPRRTLSMLSIMFTHDGLQPDHFVFACIVSACASLGYLRLGKQVHARFMLSS 135

Query: 121 ------------------------------------------------------------ 170
                                                                       
Sbjct: 136 FCDDEVVKSSLIDMYAKCGMPDDARAVFDSILFKNSVSWTAMISGYAKSGRKSDAIELFQ 195

[Close]

BLAST of Cp4.1LG02g16600 vs. NCBI nr
Match: XP_022998145.1 (pentatricopeptide repeat-containing protein At4g14050, mitochondrial [Cucurbita maxima])

HSP 1 Score: 296 bits (757), Expect = 4.36e-90
Identity = 165/271 (60.89%), Postives = 167/271 (61.62%), Query Frame = 0


Query: 1   RQSTAAAGKLHSQIIKAGFDKAGPLPNTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASI 60
           RQSTAAAGKLHSQIIKAG DKAGPLPNTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASI
Sbjct: 16  RQSTAAAGKLHSQIIKAGLDKAGPLPNTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASI 75

Query: 61  LTAHNRAILPRRTLSMLSIMFTRDGLQPDHFVFACIVSACASLGYLRLGKQ--------- 120
           LTAHNRAILPRRTLSMLSIMFT DGLQPDHFVFACIVSACASLGYLRLGKQ         
Sbjct: 76  LTAHNRAILPRRTLSMLSIMFTHDGLQPDHFVFACIVSACASLGYLRLGKQVHARFMLSS 135

Query: 121 ------------------------------------------------------------ 170
                                                                       
Sbjct: 136 FCDDEVVKSSLIDMYAKCGMPDDARAVFDSISFKNSVSWTAMISGYAKSGRKSDAIELFQ 195

[Close]

BLAST of Cp4.1LG02g16600 vs. NCBI nr
Match: KAG6606966.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 288 bits (737), Expect = 4.00e-87
Identity = 163/271 (60.15%), Postives = 163/271 (60.15%), Query Frame = 0


Query: 1   RQSTAAAGKLHSQIIKAGFDKAGPLPNTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASI 60
           RQSTAAAGKLHSQIIKAG  KA PL NTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASI
Sbjct: 16  RQSTAAAGKLHSQIIKAGLGKASPLTNTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASI 75

Query: 61  LTAHNRAILPRRTLSMLSIMFTRDGLQPDHFVFACIVSACASLGYLRLGKQ--------- 120
           LTAHNRAILPRRTLSML IM T DGLQPDHFVFACIVSACASLGYLRLGKQ         
Sbjct: 76  LTAHNRAILPRRTLSMLGIMLTHDGLQPDHFVFACIVSACASLGYLRLGKQVHARFMLSS 135

Query: 121 ------------------------------------------------------------ 170
                                                                       
Sbjct: 136 FCDDEVVKSSLIDMYAKCGMPDDARAVFDSILFKNSVSWTAMISGYAKSGRKSDAIELFQ 195

[Close]

BLAST of Cp4.1LG02g16600 vs. NCBI nr
Match: XP_038903469.1 (pentatricopeptide repeat-containing protein At4g14050, mitochondrial [Benincasa hispida])

HSP 1 Score: 276 bits (707), Expect = 1.09e-82
Identity = 153/271 (56.46%), Postives = 162/271 (59.78%), Query Frame = 0


Query: 1   RQSTAAAGKLHSQIIKAGFDKAGPLPNTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASI 60
           RQS +AAGKLHSQIIKAGF+K+GPLPNTLLDVYGKCGLIPQALQLFDEMP RDHVSWASI
Sbjct: 16  RQSASAAGKLHSQIIKAGFEKSGPLPNTLLDVYGKCGLIPQALQLFDEMPQRDHVSWASI 75

Query: 61  LTAHNRAILPRRTLSMLSIMFTRDGLQPDHFVFACIVSACASLGYLRLGKQ--------- 120
           LTAHN+AILPRRTLSML+ MFT DGLQPDHFVFACIV ACASLGYLRLGKQ         
Sbjct: 76  LTAHNQAILPRRTLSMLNTMFTLDGLQPDHFVFACIVRACASLGYLRLGKQVHARFMLSS 135

Query: 121 ------------------------------------------------------------ 170
                                                                       
Sbjct: 136 FCDDEVVKSSLIDMYAKCAQPDDARAVFDSILFKNSVSWTAMISGYARSGRKCEAIELFQ 195

[Close]

BLAST of Cp4.1LG02g16600 vs. ExPASy TrEMBL
Match: A0A6J1G9N5 (pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111452061 PE=3 SV=1)

HSP 1 Score: 297 bits (760), Expect = 7.57e-91
Identity = 167/271 (61.62%), Postives = 167/271 (61.62%), Query Frame = 0


Query: 1   RQSTAAAGKLHSQIIKAGFDKAGPLPNTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASI 60
           RQSTAAAGKLHSQIIKAG DKAGPL NTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASI
Sbjct: 16  RQSTAAAGKLHSQIIKAGLDKAGPLANTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASI 75

Query: 61  LTAHNRAILPRRTLSMLSIMFTRDGLQPDHFVFACIVSACASLGYLRLGKQ--------- 120
           LTAHNRAILPRRTLSMLSIMFT DGLQPDHFVFACIVSACASLGYLRLGKQ         
Sbjct: 76  LTAHNRAILPRRTLSMLSIMFTHDGLQPDHFVFACIVSACASLGYLRLGKQVHARFMLSS 135

Query: 121 ------------------------------------------------------------ 170
                                                                       
Sbjct: 136 FCDDEVVKSSLIDMYAKCGMPDDARAVFDSILFKNSVSWTAMISGYAKSGRKSDAIELFQ 195

[Close]

BLAST of Cp4.1LG02g16600 vs. ExPASy TrEMBL
Match: A0A6J1KBS5 (pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111492878 PE=3 SV=1)

HSP 1 Score: 296 bits (757), Expect = 2.11e-90
Identity = 165/271 (60.89%), Postives = 167/271 (61.62%), Query Frame = 0


Query: 1   RQSTAAAGKLHSQIIKAGFDKAGPLPNTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASI 60
           RQSTAAAGKLHSQIIKAG DKAGPLPNTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASI
Sbjct: 16  RQSTAAAGKLHSQIIKAGLDKAGPLPNTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASI 75

Query: 61  LTAHNRAILPRRTLSMLSIMFTRDGLQPDHFVFACIVSACASLGYLRLGKQ--------- 120
           LTAHNRAILPRRTLSMLSIMFT DGLQPDHFVFACIVSACASLGYLRLGKQ         
Sbjct: 76  LTAHNRAILPRRTLSMLSIMFTHDGLQPDHFVFACIVSACASLGYLRLGKQVHARFMLSS 135

Query: 121 ------------------------------------------------------------ 170
                                                                       
Sbjct: 136 FCDDEVVKSSLIDMYAKCGMPDDARAVFDSISFKNSVSWTAMISGYAKSGRKSDAIELFQ 195

[Close]

BLAST of Cp4.1LG02g16600 vs. ExPASy TrEMBL
Match: A0A5D3E178 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00970 PE=3 SV=1)

HSP 1 Score: 273 bits (699), Expect = 8.20e-82
Identity = 151/271 (55.72%), Postives = 161/271 (59.41%), Query Frame = 0


Query: 1   RQSTAAAGKLHSQIIKAGFDKAGPLPNTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASI 60
           RQS +AAGKLHSQIIKAGFDK+  L NTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASI
Sbjct: 16  RQSASAAGKLHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASI 75

Query: 61  LTAHNRAILPRRTLSMLSIMFTRDGLQPDHFVFACIVSACASLGYLRLGKQ--------- 120
           LTAHN+A++PRRTLSML+IMFT DGLQPDHFVFACIV AC+SLGYLRLGKQ         
Sbjct: 76  LTAHNKALIPRRTLSMLNIMFTNDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSF 135

Query: 121 ------------------------------------------------------------ 170
                                                                       
Sbjct: 136 FCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFL 195

[Close]

BLAST of Cp4.1LG02g16600 vs. ExPASy TrEMBL
Match: A0A1S3BZM7 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103494781 PE=3 SV=1)

HSP 1 Score: 273 bits (699), Expect = 8.20e-82
Identity = 151/271 (55.72%), Postives = 161/271 (59.41%), Query Frame = 0


Query: 1   RQSTAAAGKLHSQIIKAGFDKAGPLPNTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASI 60
           RQS +AAGKLHSQIIKAGFDK+  L NTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASI
Sbjct: 16  RQSASAAGKLHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASI 75

Query: 61  LTAHNRAILPRRTLSMLSIMFTRDGLQPDHFVFACIVSACASLGYLRLGKQ--------- 120
           LTAHN+A++PRRTLSML+IMFT DGLQPDHFVFACIV AC+SLGYLRLGKQ         
Sbjct: 76  LTAHNKALIPRRTLSMLNIMFTNDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSX 135

Query: 121 ------------------------------------------------------------ 170
                                                                       
Sbjct: 136 FCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFL 195

[Close]

BLAST of Cp4.1LG02g16600 vs. ExPASy TrEMBL
Match: A0A0A0KY72 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G001680 PE=3 SV=1)

HSP 1 Score: 267 bits (683), Expect = 1.87e-79
Identity = 148/271 (54.61%), Postives = 160/271 (59.04%), Query Frame = 0


Query: 1   RQSTAAAGKLHSQIIKAGFDKAGPLPNTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASI 60
           RQS +AAG+LHSQIIKAGFDK+  L NTLLDVYGKCGLIPQALQLFDEMP+RDHVSWASI
Sbjct: 16  RQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASI 75

Query: 61  LTAHNRAILPRRTLSMLSIMFTRDGLQPDHFVFACIVSACASLGYLRLGKQ--------- 120
           LTAHN+A++PRRTLSML+ MFT DGLQPDHFVFACIV AC+SLGYLRLGKQ         
Sbjct: 76  LTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSF 135

Query: 121 ------------------------------------------------------------ 170
                                                                       
Sbjct: 136 FCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFL 195

[Close]

BLAST of Cp4.1LG02g16600 vs. TAIR 10
Match: AT4G14050.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 171.4 bits (433), Expect = 1.6e-42
Identity = 99/270 (36.67%), Postives = 131/270 (48.52%), Query Frame = 0


Query: 2   QSTAAAGKLHSQIIKAGFDKAGPLPNTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASIL 61
           ++   A  LH+ I+K G  +  PL NTL++VYGKCG    ALQ+FDEMPHRDH++WAS+L
Sbjct: 17  RTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVL 76

Query: 62  TAHNRAILPRRTLSMLSIMFTRDGLQPDHFVFACIVSACASLGYLRLGKQ---------- 121
           TA N+A L  +TLS+ S + +  GL+PD FVF+ +V ACA+LG +  G+Q          
Sbjct: 77  TALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEY 136

Query: 122 ------------------------------------------------------------ 171
                                                                       
Sbjct: 137 ANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRI 196

[Close]

BLAST of Cp4.1LG02g16600 vs. TAIR 10
Match: AT4G37170.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 92.4 bits (228), Expect = 9.7e-19
Identity = 51/162 (31.48%), Postives = 84/162 (51.85%), Query Frame = 0


Query: 9   KLHSQIIKAGFDKAGPLPNTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASILTAHNRAI 68
           ++H  I++AG D    L ++L+D+YGKCG I +A  +FD++  +D VSW S++  + ++ 
Sbjct: 239 EIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSS 298

Query: 69  LPRRTLSMLSIMFTRDGLQPDHFVFACIVSACASLGYLRLGKQMRREGIDVVDPLVFSSV 128
             R   S+                F+ +V +C                 +  +   F+ V
Sbjct: 299 RWREGFSL----------------FSELVGSC-----------------ERPNEYTFAGV 358

Query: 129 VGACANLALLELGKQMHGLVIAIGFESCLFISNTLVDMYAKC 171
           + ACA+L   ELGKQ+HG +  +GF+   F S++LVDMY KC
Sbjct: 359 LNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKC 367

[Close]

BLAST of Cp4.1LG02g16600 vs. TAIR 10
Match: AT1G56570.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 88.6 bits (218), Expect = 1.4e-17
Identity = 54/184 (29.35%), Postives = 88/184 (47.83%), Query Frame = 0


Query: 3   STAAAGKLHSQIIKAGFDKAGPLPNTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASILT 62
           S     ++H+ +IK GF    P+ N++LD+Y +CG + +A   F EM  +D ++W ++++
Sbjct: 228 SVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLIS 287

Query: 63  AHNRAILPRRTLSMLSIMFTRDGLQPDHFVFACIVSACASLGYLRLGKQMRREGIDVVDP 122
                 L R   S   +MF R   +   FV  C                           
Sbjct: 288 E-----LERSDSSEALLMFQR--FESQGFVPNC--------------------------- 347

Query: 123 LVFSSVVGACANLALLELGKQMHGLVIAIGFESCLFISNTLVDMYAKCRWCLCFRREPGD 182
             F+S+V ACAN+A L  G+Q+HG +   GF   + ++N L+DMYAKC      +R  G+
Sbjct: 348 YTFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGE 377

Query: 183 LITR 187
           ++ R
Sbjct: 408 IVDR 377

[Close]

BLAST of Cp4.1LG02g16600 vs. TAIR 10
Match: AT4G02750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 87.0 bits (214), Expect = 4.1e-17
Identity = 51/144 (35.42%), Postives = 73/144 (50.69%), Query Frame = 0


Query: 27  NTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASILTAHNRAILPRRTLSMLSIMFTRDGL 86
           NT++  Y +CG I +A  LFD+MP RD VSWA+++  ++                     
Sbjct: 347 NTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYS--------------------- 406

Query: 87  QPDHFVFACIVSACASLGYLRLGKQMRREGIDVVDPLVFSSVVGACANLALLELGKQMHG 146
           Q  H           S   LRL  QM REG   ++   FSS +  CA++  LELGKQ+HG
Sbjct: 407 QSGH-----------SFEALRLFVQMEREG-GRLNRSSFSSALSTCADVVALELGKQLHG 457

Query: 147 LVIAIGFESCLFISNTLVDMYAKC 171
            ++  G+E+  F+ N L+ MY KC
Sbjct: 467 RLVKGGYETGCFVGNALLLMYCKC 457

[Close]

BLAST of Cp4.1LG02g16600 vs. TAIR 10
Match: AT5G13230.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 86.7 bits (213), Expect = 5.3e-17
Identity = 49/162 (30.25%), Postives = 79/162 (48.77%), Query Frame = 0


Query: 9   KLHSQIIKAGFDKAGPLPNTLLDVYGKCGLIPQALQLFDEMPHRDHVSWASILTAHNRAI 68
           +LH  ++K GFD    + N L+DVY KC  +  A++LF E+  ++ VSW +++  +    
Sbjct: 369 QLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLG 428

Query: 69  LPRRTLSMLSIMFTRDGLQPDHFVFACIVSACASLGYLRLGKQMRREGIDVVDPLVFSSV 128
              +  SM                                 ++  R  + V + + FSS 
Sbjct: 429 EGGKAFSMF--------------------------------REALRNQVSVTE-VTFSSA 488

Query: 129 VGACANLALLELGKQMHGLVIAIGFESCLFISNTLVDMYAKC 171
           +GACA+LA ++LG Q+HGL I       + +SN+L+DMYAKC
Sbjct: 489 LGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKC 497

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g16600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23266	2.3e-41	36.67	Pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Arabidop...	[more]
O23169	1.4e-17	31.48	Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana OX...	[more]
Q9FXA9	2.0e-16	29.35	Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis th...	[more]
Q9SY02	5.7e-16	35.42	Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX...	[more]
Q9LYV3	7.5e-16	30.25	Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS...	[more]

BLAST of Cp4.1LG02g16600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023523455.1	2.37e-93	62.73	pentatricopeptide repeat-containing protein At4g14050, mitochondrial [Cucurbita ...	[more]
XP_022948359.1	1.56e-90	61.62	pentatricopeptide repeat-containing protein At4g14050, mitochondrial [Cucurbita ...	[more]
XP_022998145.1	4.36e-90	60.89	pentatricopeptide repeat-containing protein At4g14050, mitochondrial [Cucurbita ...	[more]
KAG6606966.1	4.00e-87	60.15	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_038903469.1	1.09e-82	56.46	pentatricopeptide repeat-containing protein At4g14050, mitochondrial [Benincasa ...	[more]

BLAST of Cp4.1LG02g16600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G9N5	7.57e-91	61.62	pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Cucurbit...	[more]
A0A6J1KBS5	2.11e-90	60.89	pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Cucurbit...	[more]
A0A5D3E178	8.20e-82	55.72	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BZM7	8.20e-82	55.72	LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g14050, mito...	[more]
A0A0A0KY72	1.87e-79	54.61	DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G0016...	[more]

BLAST of Cp4.1LG02g16600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14050.1	1.6e-42	36.67	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G37170.1	9.7e-19	31.48	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G56570.1	1.4e-17	29.35	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G02750.1	4.1e-17	35.42	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G13230.1	5.3e-17	30.25	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 27..52 e-value: 1.5E-4 score: 21.8
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 27..55 e-value: 4.7E-4 score: 18.1
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..116 e-value: 3.7E-13 score: 51.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 195..224
None	No IPR available	PANTHER	PTHR47928	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 112..171
None	No IPR available	PANTHER	PTHR47928	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 4..112
None	No IPR available	PANTHER	PTHR47928:SF153	OS11G0661000 PROTEIN	coord: 4..112 coord: 112..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g16600.1	Cp4.1LG02g16600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding