Cp4.1LG02g16460 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG02g16460
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionindole-3-acetic acid-induced protein ARG2-like
LocationCp4.1LG02: 12876370 .. 12876606 (+)
RNA-Seq ExpressionCp4.1LG02g16460
SyntenyCp4.1LG02g16460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATCCTTGGACACGTGGTGTGTGTTGGACAGGCGGGGGTATAGGGCGGGGGCGACGGCGGCGGAAGGAGTTACTGCACGAAGTGGCGGAATGATAAAGAAGGGAGAAGATGAAAGAAGTACGGAGATGGCGGCGTGGGTCCCAGATCCGGTCACCGGCTACTACCGGCCGGAGAAACGTAATGAATTGAAGAAAAGGAAAAACGTTTTTATTAATTTTCATTTAATACTTTAA

mRNA sequence

ATGCAATCCTTGGACACGTGGTGTGTGTTGGACAGGCGGGGGTATAGGGCGGGGGCGACGGCGGCGGAAGGAGTTACTGCACGAAGTGGCGGAATGATAAAGAAGGGAGAAGATGAAAGAAGTACGGAGATGGCGGCGTGGGTCCCAGATCCGGTCACCGGCTACTACCGGCCGGAGAAACGTAATGAATTGAAGAAAAGGAAAAACGTTTTTATTAATTTTCATTTAATACTTTAA

Coding sequence (CDS)

ATGCAATCCTTGGACACGTGGTGTGTGTTGGACAGGCGGGGGTATAGGGCGGGGGCGACGGCGGCGGAAGGAGTTACTGCACGAAGTGGCGGAATGATAAAGAAGGGAGAAGATGAAAGAAGTACGGAGATGGCGGCGTGGGTCCCAGATCCGGTCACCGGCTACTACCGGCCGGAGAAACGTAATGAATTGAAGAAAAGGAAAAACGTTTTTATTAATTTTCATTTAATACTTTAA

Protein sequence

MQSLDTWCVLDRRGYRAGATAAEGVTARSGGMIKKGEDERSTEMAAWVPDPVTGYYRPEKRNELKKRKNVFINFHLIL
Homology
BLAST of Cp4.1LG02g16460 vs. ExPASy Swiss-Prot
Match: P32292 (Indole-3-acetic acid-induced protein ARG2 OS=Vigna radiata var. radiata OX=3916 GN=ARG2 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.7e-06
Identity = 27/59 (45.76%), Postives = 34/59 (57.63%), Query Frame = 0

Query: 12 RRGYRAGATAAEGVT----ARSGGMIKKGEDE--RSTEMAAWVPDPVTGYYRPEKRNEL 65
          R G+ A A A +  T    +  G M+ K  +E  R  E  +WVPDPVTGYYRPE  NE+
Sbjct: 25 RHGFAAAAAATQSATRGGASIGGNMVPKSGEEKVRGGEKVSWVPDPVTGYYRPENTNEI 83

BLAST of Cp4.1LG02g16460 vs. ExPASy Swiss-Prot
Match: Q93WF6 (Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SAG21 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 3.9e-05
Identity = 27/55 (49.09%), Postives = 33/55 (60.00%), Query Frame = 0

Query: 12 RRGYRAGATAAEGVTARSG-------GMIKKGEDERSTEMAAWVPDPVTGYYRPE 60
          RRGY   ATAA+G  +  G        ++KK   E ST+  +WVPDP TGYYRPE
Sbjct: 25 RRGY--AATAAQGSVSSGGRSGAVASAVMKKKGVEESTQKISWVPDPKTGYYRPE 77

BLAST of Cp4.1LG02g16460 vs. ExPASy Swiss-Prot
Match: Q9SRX6 (Late embryogenis abundant protein 2 OS=Arabidopsis thaliana OX=3702 GN=LEA2 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 5.1e-05
Identity = 28/53 (52.83%), Postives = 34/53 (64.15%), Query Frame = 0

Query: 12 RRGYRAGA-TAAEGVTARSGGMIKKGEDERSTEMAAWVPDPVTGYYRPEKRNE 64
          RRG+ A A TA +G  + S   +KK   E S+E A WVPDP TGYYRPE  +E
Sbjct: 25 RRGFAAAAKTALDG--SVSTAEMKKRAGEASSEKAPWVPDPKTGYYRPETVSE 75

BLAST of Cp4.1LG02g16460 vs. ExPASy Swiss-Prot
Match: Q39644 (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis OX=2711 GN=LEA5 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.0e-04
Identity = 25/56 (44.64%), Postives = 32/56 (57.14%), Query Frame = 0

Query: 10 LDRRGYRAGATAAEGVTARSGGM----IKKGEDERSTEMAAWVPDPVTGYYRPEKR 62
          + RRGY A A    G  +R+G M    ++    E S   +AW PDP+TGYYRPE R
Sbjct: 23 ISRRGYAAAAPL--GTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENR 76

BLAST of Cp4.1LG02g16460 vs. NCBI nr
Match: KAG6606955.1 (Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.7 bits (221), Expect = 3.36e-21
Identity = 47/65 (72.31%), Postives = 50/65 (76.92%), Query Frame = 0

Query: 10 LDRRGYRAGATAA----------EGVTARSGGMIKKGEDERSTEMAAWVPDPVTGYYRPE 64
          L RRGYRAGATAA          EGVTARSGGMIKK E+ERSTEMAAWVPDPVTGYYRPE
Sbjct: 18 LIRRGYRAGATAASQRVASGTAAEGVTARSGGMIKKEEEERSTEMAAWVPDPVTGYYRPE 77

BLAST of Cp4.1LG02g16460 vs. NCBI nr
Match: XP_022949042.1 (protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 87.0 bits (214), Expect = 3.80e-20
Identity = 45/60 (75.00%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 10 LDRRGYRAGATAA----------EGVTARSGGMIKKGEDERSTEMAAWVPDPVTGYYRPE 59
          L RRGYRAGATAA          EGVTARSGGMIKK E+ER TEMAAW+PDPVTGYYRPE
Sbjct: 17 LIRRGYRAGATAASQRVASGTAAEGVTARSGGMIKKEEEERRTEMAAWIPDPVTGYYRPE 76

BLAST of Cp4.1LG02g16460 vs. NCBI nr
Match: KAG7036659.1 (Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 88.2 bits (217), Expect = 8.80e-20
Identity = 45/63 (71.43%), Postives = 49/63 (77.78%), Query Frame = 0

Query: 12  RRGYRAGATAA----------EGVTARSGGMIKKGEDERSTEMAAWVPDPVTGYYRPEKR 64
           +RGYRAGATAA          EGVTARSGGMIKK E+ERSTEMAAWVPDPVTGYYRPE  
Sbjct: 92  KRGYRAGATAAAERVASGTAAEGVTARSGGMIKKEEEERSTEMAAWVPDPVTGYYRPENY 151

BLAST of Cp4.1LG02g16460 vs. NCBI nr
Match: XP_038903721.1 (protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 70.9 bits (172), Expect = 1.03e-13
Identity = 38/60 (63.33%), Postives = 41/60 (68.33%), Query Frame = 0

Query: 10 LDRRGYRAGA----------TAAEGVTARSGGMIKKGEDERSTEMAAWVPDPVTGYYRPE 59
          L RRGY A A          +AAEG+ ARS GM+KK E E STE AAWVPDPVTGYYRPE
Sbjct: 22 LFRRGYTAEAMAASQRVASTSAAEGIPARSNGMMKKEESETSTEKAAWVPDPVTGYYRPE 81

BLAST of Cp4.1LG02g16460 vs. NCBI nr
Match: TXG63409.1 (hypothetical protein EZV62_010403 [Acer yangbiense])

HSP 1 Score: 68.2 bits (165), Expect = 8.98e-13
Identity = 35/56 (62.50%), Postives = 40/56 (71.43%), Query Frame = 0

Query: 12 RRGYRAGATAAEGVTARSGGMIKKGEDE--RSTEMAAWVPDPVTGYYRPEK-RNEL 64
          RRGY A A A++GV +R  GM+KK  +E   STE  AWVPDPVTGYYRPE   NEL
Sbjct: 25 RRGYAAAAAASQGVVSRGSGMVKKSVEEIVGSTEKVAWVPDPVTGYYRPENLTNEL 80

BLAST of Cp4.1LG02g16460 vs. ExPASy TrEMBL
Match: A0A6J1GAX2 (protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111452505 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.84e-20
Identity = 45/60 (75.00%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 10 LDRRGYRAGATAA----------EGVTARSGGMIKKGEDERSTEMAAWVPDPVTGYYRPE 59
          L RRGYRAGATAA          EGVTARSGGMIKK E+ER TEMAAW+PDPVTGYYRPE
Sbjct: 17 LIRRGYRAGATAASQRVASGTAAEGVTARSGGMIKKEEEERRTEMAAWIPDPVTGYYRPE 76

BLAST of Cp4.1LG02g16460 vs. ExPASy TrEMBL
Match: A0A5C7I398 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_010403 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.35e-13
Identity = 35/56 (62.50%), Postives = 40/56 (71.43%), Query Frame = 0

Query: 12 RRGYRAGATAAEGVTARSGGMIKKGEDE--RSTEMAAWVPDPVTGYYRPEK-RNEL 64
          RRGY A A A++GV +R  GM+KK  +E   STE  AWVPDPVTGYYRPE   NEL
Sbjct: 25 RRGYAAAAAASQGVVSRGSGMVKKSVEEIVGSTEKVAWVPDPVTGYYRPENLTNEL 80

BLAST of Cp4.1LG02g16460 vs. ExPASy TrEMBL
Match: A0A6J1F2C1 (protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111441545 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.04e-12
Identity = 35/55 (63.64%), Postives = 38/55 (69.09%), Query Frame = 0

Query: 10 LDRRGYRAGATAAEGVTARSGGMIKKGED-ERSTEMAAWVPDPVTGYYRPEKRNE 63
          L RRGY A A AA    AR  GM+KKGE  ERS E  AWVPDPVTGYYRPE  ++
Sbjct: 23 LIRRGYTAEAMAASKRAARDDGMMKKGEQAERSREKVAWVPDPVTGYYRPENYSD 77

BLAST of Cp4.1LG02g16460 vs. ExPASy TrEMBL
Match: A0A0A0KTB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001850 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.62e-11
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 0

Query: 3  SLDTWCVLDRRGYRAGATAAEGVTARSGGMIKKGEDE----RSTEMAAWVPDPVTGYYRP 59
          +L+T  +L RRGY   ATA EGV AR GG++KK E+     R  +  +WVPDPVTGYYRP
Sbjct: 7  TLNTLSILFRRGY---ATAPEGVAARLGGIMKKKEESLRIGREKKAVSWVPDPVTGYYRP 64

BLAST of Cp4.1LG02g16460 vs. ExPASy TrEMBL
Match: A0A6J1J9I8 (protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111482498 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.40e-11
Identity = 34/55 (61.82%), Postives = 37/55 (67.27%), Query Frame = 0

Query: 10 LDRRGYRAGATAAEGVTARSGGMIKKGED-ERSTEMAAWVPDPVTGYYRPEKRNE 63
          L RRGY A A AA    AR  GM+KK E  ERS E  AWVPDPVTGYYRPE  ++
Sbjct: 23 LIRRGYTAEAMAASQRAARDDGMMKKEEQAERSREKVAWVPDPVTGYYRPENYSD 77

BLAST of Cp4.1LG02g16460 vs. TAIR 10
Match: AT4G02380.1 (senescence-associated gene 21 )

HSP 1 Score: 48.5 bits (114), Expect = 2.8e-06
Identity = 27/55 (49.09%), Postives = 33/55 (60.00%), Query Frame = 0

Query: 12 RRGYRAGATAAEGVTARSG-------GMIKKGEDERSTEMAAWVPDPVTGYYRPE 60
          RRGY   ATAA+G  +  G        ++KK   E ST+  +WVPDP TGYYRPE
Sbjct: 25 RRGY--AATAAQGSVSSGGRSGAVASAVMKKKGVEESTQKISWVPDPKTGYYRPE 77

BLAST of Cp4.1LG02g16460 vs. TAIR 10
Match: AT1G02820.1 (Late embryogenesis abundant 3 (LEA3) family protein )

HSP 1 Score: 48.1 bits (113), Expect = 3.7e-06
Identity = 28/53 (52.83%), Postives = 34/53 (64.15%), Query Frame = 0

Query: 12 RRGYRAGA-TAAEGVTARSGGMIKKGEDERSTEMAAWVPDPVTGYYRPEKRNE 64
          RRG+ A A TA +G  + S   +KK   E S+E A WVPDP TGYYRPE  +E
Sbjct: 25 RRGFAAAAKTALDG--SVSTAEMKKRAGEASSEKAPWVPDPKTGYYRPETVSE 75

BLAST of Cp4.1LG02g16460 vs. TAIR 10
Match: AT4G02380.2 (senescence-associated gene 21 )

HSP 1 Score: 47.4 bits (111), Expect = 6.2e-06
Identity = 26/55 (47.27%), Postives = 33/55 (60.00%), Query Frame = 0

Query: 12 RRGYRAGATAAEGVTARSG-------GMIKKGEDERSTEMAAWVPDPVTGYYRPE 60
          +RGY   ATAA+G  +  G        ++KK   E ST+  +WVPDP TGYYRPE
Sbjct: 6  KRGY--AATAAQGSVSSGGRSGAVASAVMKKKGVEESTQKISWVPDPKTGYYRPE 58

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P322922.7e-0645.76Indole-3-acetic acid-induced protein ARG2 OS=Vigna radiata var. radiata OX=3916 ... [more]
Q93WF63.9e-0549.09Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial OS=Arabidopsis thaliana OX=... [more]
Q9SRX65.1e-0552.83Late embryogenis abundant protein 2 OS=Arabidopsis thaliana OX=3702 GN=LEA2 PE=2... [more]
Q396442.0e-0444.64Late embryogenesis abundant protein Lea5 OS=Citrus sinensis OX=2711 GN=LEA5 PE=2... [more]
Match NameE-valueIdentityDescription
KAG6606955.13.36e-2172.31Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial, partial [Cucurbita argyros... [more]
XP_022949042.13.80e-2075.00protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Cucurbita moschata][more]
KAG7036659.18.80e-2071.43Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial, partial [Cucurbita argyros... [more]
XP_038903721.11.03e-1363.33protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Benincasa hispida][more]
TXG63409.18.98e-1362.50hypothetical protein EZV62_010403 [Acer yangbiense][more]
Match NameE-valueIdentityDescription
A0A6J1GAX21.84e-2075.00protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like OS=Cucurbita moschata ... [more]
A0A5C7I3984.35e-1362.50Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_010403 PE=3 SV=1[more]
A0A6J1F2C12.04e-1263.64protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like OS=Cucurbita moschata ... [more]
A0A0A0KTB81.62e-1155.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001850 PE=4 SV=1[more]
A0A6J1J9I83.40e-1161.82protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like OS=Cucurbita maxima OX... [more]
Match NameE-valueIdentityDescription
AT4G02380.12.8e-0649.09senescence-associated gene 21 [more]
AT1G02820.13.7e-0652.83Late embryogenesis abundant 3 (LEA3) family protein [more]
AT4G02380.26.2e-0647.27senescence-associated gene 21 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004926Late embryogenesis abundant protein, LEA_3 subgroupPFAMPF03242LEA_3coord: 9..61
e-value: 9.3E-13
score: 48.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g16460.1Cp4.1LG02g16460.1mRNA