Cp4.1LG02g16230 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g16230
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Basic helix-loop-helix protein
Location	Cp4.1LG02: 13025387 .. 13025596 (+)
RNA-Seq Expression	Cp4.1LG02g16230
Synteny	Cp4.1LG02g16230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGAAAAGGGGTCGTCGAGATCGAGGTCGAAGAAGAGGGTTTGTTGTAAGAGGATCAAGAGGCTAAGGAAGATGATACCAAAGGGTGAATCTTTGGAGTTGAATGGGCTTTTTAGAGAGACGGCTGATTATATTGTGTGGTTGCAAATGAAGGTGAAGATGATGCAAGCTTTGGTTCATGTGTTGAATGGGTCTATCAATGATTGA

mRNA sequence

ATGCAAGAAAAGGGGTCGTCGAGATCGAGGTCGAAGAAGAGGGTTTGTTGTAAGAGGATCAAGAGGCTAAGGAAGATGATACCAAAGGGTGAATCTTTGGAGTTGAATGGGCTTTTTAGAGAGACGGCTGATTATATTGTGTGGTTGCAAATGAAGGTGAAGATGATGCAAGCTTTGGTTCATGTGTTGAATGGGTCTATCAATGATTGA

Coding sequence (CDS)

ATGCAAGAAAAGGGGTCGTCGAGATCGAGGTCGAAGAAGAGGGTTTGTTGTAAGAGGATCAAGAGGCTAAGGAAGATGATACCAAAGGGTGAATCTTTGGAGTTGAATGGGCTTTTTAGAGAGACGGCTGATTATATTGTGTGGTTGCAAATGAAGGTGAAGATGATGCAAGCTTTGGTTCATGTGTTGAATGGGTCTATCAATGATTGA

Protein sequence

MQEKGSSRSRSKKRVCCKRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNGSIND

Homology

[Close]

BLAST of Cp4.1LG02g16230 vs. ExPASy Swiss-Prot
Match: O22901 (Transcription factor UPBEAT1 OS=Arabidopsis thaliana OX=3702 GN=UPB1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.1e-06
Identity = 29/61 (47.54%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 4  KGSSRSRSKKRVCCKRIKRLRKMIPKGESLE-LNGLFRETADYIVWLQMKVKMMQALVHV 63
          K    SR   R   +R+K L++++P  ++ E L+GLFR+TADYI+ L+MKVK+MQ +V V
Sbjct: 36 KSVEASRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTADYILALEMKVKVMQTMVQV 95

[Close]

BLAST of Cp4.1LG02g16230 vs. NCBI nr
Match: KGN58133.1 (hypothetical protein Csa_017541 [Cucumis sativus])

HSP 1 Score: 103 bits (256), Expect = 8.02e-27
Identity = 51/61 (83.61%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 6  SSRSRSKKRVCCKRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNG 65
          SSRS S+KR+C KRI+RL+KM+PK ES+ELNGLFRETADYIVWLQMKV+MMQALVHVLNG
Sbjct: 29 SSRS-SEKRICLKRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNG 88

[Close]

BLAST of Cp4.1LG02g16230 vs. NCBI nr
Match: KAA0038125.1 (basic helix-loop-helix protein [Cucumis melo var. makuwa] >TYK20482.1 basic helix-loop-helix protein [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (253), Expect = 2.30e-26
Identity = 48/56 (85.71%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 11 SKKRVCCKRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNGS 66
          S+KR+C KRI++LRKMIPK ES+ELNGLFRETADYIVWLQMKV+MMQALVHVLNGS
Sbjct: 33 SEKRICLKRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGS 88

[Close]

BLAST of Cp4.1LG02g16230 vs. NCBI nr
Match: KAG1365315.1 (Transcription factor UPBEAT1 [Cocos nucifera])

HSP 1 Score: 65.9 bits (159), Expect = 6.43e-12
Identity = 30/47 (63.83%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 18 KRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLN 64
          +R+K+LR+++P GES+EL GLFRETADYI+ LQM+VK+MQ +V VL+
Sbjct: 51 RRMKKLRRLLPNGESMELEGLFRETADYIMCLQMQVKVMQIMVSVLS 97

[Close]

BLAST of Cp4.1LG02g16230 vs. NCBI nr
Match: XP_006444537.1 (transcription factor UPBEAT1 [Citrus clementina] >XP_006492358.1 transcription factor UPBEAT1 [Citrus sinensis] >ESR57777.1 hypothetical protein CICLE_v10022819mg [Citrus clementina] >KDO86947.1 hypothetical protein CISIN_1g036781mg [Citrus sinensis])

HSP 1 Score: 66.6 bits (161), Expect = 6.65e-12
Identity = 32/49 (65.31%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 18  KRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNGS 66
           K++K L+K+IP GE L L GLFRETADYI+ LQM+VK+MQ +V+VL GS
Sbjct: 84  KKVKTLKKLIPNGEPLGLAGLFRETADYILALQMRVKVMQIMVNVLTGS 132

[Close]

BLAST of Cp4.1LG02g16230 vs. NCBI nr
Match: GFZ04515.1 (hypothetical protein Acr_17g0000870 [Actinidia rufa])

HSP 1 Score: 66.2 bits (160), Expect = 6.99e-12
Identity = 31/57 (54.39%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 10  RSKKRVCCKRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNGS 66
           R +K V  K+++ LRK++PK ES+ L+GLFR+TA+YI+ LQM+V++MQ +V VL+GS
Sbjct: 60  RRRKTVVEKKVRALRKLVPKSESMGLDGLFRDTAEYILALQMRVQVMQIMVQVLSGS 116

[Close]

BLAST of Cp4.1LG02g16230 vs. ExPASy TrEMBL
Match: A0A0A0L8J6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G536650 PE=4 SV=1)

HSP 1 Score: 103 bits (256), Expect = 3.89e-27
Identity = 51/61 (83.61%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 6  SSRSRSKKRVCCKRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNG 65
          SSRS S+KR+C KRI+RL+KM+PK ES+ELNGLFRETADYIVWLQMKV+MMQALVHVLNG
Sbjct: 29 SSRS-SEKRICLKRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNG 88

[Close]

BLAST of Cp4.1LG02g16230 vs. ExPASy TrEMBL
Match: A0A5A7T9M0 (Basic helix-loop-helix protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00560 PE=4 SV=1)

HSP 1 Score: 102 bits (253), Expect = 1.11e-26
Identity = 48/56 (85.71%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 11 SKKRVCCKRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNGS 66
          S+KR+C KRI++LRKMIPK ES+ELNGLFRETADYIVWLQMKV+MMQALVHVLNGS
Sbjct: 33 SEKRICLKRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGS 88

[Close]

BLAST of Cp4.1LG02g16230 vs. ExPASy TrEMBL
Match: A0A067HFY5 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g036781mg PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.22e-12
Identity = 32/49 (65.31%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 18  KRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNGS 66
           K++K L+K+IP GE L L GLFRETADYI+ LQM+VK+MQ +V+VL GS
Sbjct: 84  KKVKTLKKLIPNGEPLGLAGLFRETADYILALQMRVKVMQIMVNVLTGS 132

[Close]

BLAST of Cp4.1LG02g16230 vs. ExPASy TrEMBL
Match: V4TW78 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10022819mg PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.22e-12
Identity = 32/49 (65.31%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 18  KRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNGS 66
           K++K L+K+IP GE L L GLFRETADYI+ LQM+VK+MQ +V+VL GS
Sbjct: 84  KKVKTLKKLIPNGEPLGLAGLFRETADYILALQMRVKVMQIMVNVLTGS 132

[Close]

BLAST of Cp4.1LG02g16230 vs. ExPASy TrEMBL
Match: A0A7J0G0Q9 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_17g0000870 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.38e-12
Identity = 31/57 (54.39%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 10  RSKKRVCCKRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNGS 66
           R +K V  K+++ LRK++PK ES+ L+GLFR+TA+YI+ LQM+V++MQ +V VL+GS
Sbjct: 60  RRRKTVVEKKVRALRKLVPKSESMGLDGLFRDTAEYILALQMRVQVMQIMVQVLSGS 116

[Close]

BLAST of Cp4.1LG02g16230 vs. TAIR 10
Match: AT2G47270.1 (sequence-specific DNA binding transcription factors;transcription regulators )

HSP 1 Score: 51.6 bits (122), Expect = 2.9e-07
Identity = 29/61 (47.54%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 4  KGSSRSRSKKRVCCKRIKRLRKMIPKGESLE-LNGLFRETADYIVWLQMKVKMMQALVHV 63
          K    SR   R   +R+K L++++P  ++ E L+GLFR+TADYI+ L+MKVK+MQ +V V
Sbjct: 36 KSVEASRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTADYILALEMKVKVMQTMVQV 95

[Close]

BLAST of Cp4.1LG02g16230 vs. TAIR 10
Match: AT2G43060.1 (ILI1 binding bHLH 1 )

HSP 1 Score: 41.6 bits (96), Expect = 3.0e-04
Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 0


Query: 6   SSRSRSKKR--VCCKRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVL 65
           S R RS +R  V  +  +RLR ++P G  +E + L  ETA YI  L M+VK+MQ LV  L
Sbjct: 94  SKRRRSNQRAPVVEEAAERLRNLVPGGGGMETSKLMEETAHYIKCLSMQVKVMQCLVDGL 153

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g16230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22901	4.1e-06	47.54	Transcription factor UPBEAT1 OS=Arabidopsis thaliana OX=3702 GN=UPB1 PE=2 SV=1	[more]

BLAST of Cp4.1LG02g16230 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58133.1	8.02e-27	83.61	hypothetical protein Csa_017541 [Cucumis sativus]	[more]
KAA0038125.1	2.30e-26	85.71	basic helix-loop-helix protein [Cucumis melo var. makuwa] >TYK20482.1 basic heli...	[more]
KAG1365315.1	6.43e-12	63.83	Transcription factor UPBEAT1 [Cocos nucifera]	[more]
XP_006444537.1	6.65e-12	65.31	transcription factor UPBEAT1 [Citrus clementina] >XP_006492358.1 transcription f...	[more]
GFZ04515.1	6.99e-12	54.39	hypothetical protein Acr_17g0000870 [Actinidia rufa]	[more]

BLAST of Cp4.1LG02g16230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8J6	3.89e-27	83.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G536650 PE=4 SV=1	[more]
A0A5A7T9M0	1.11e-26	85.71	Basic helix-loop-helix protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A067HFY5	3.22e-12	65.31	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g036781mg PE=4 SV=1	[more]
V4TW78	3.22e-12	65.31	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10022819mg PE=4 ...	[more]
A0A7J0G0Q9	3.38e-12	54.39	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_17g0000870 PE=4 SV=1	[more]

BLAST of Cp4.1LG02g16230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47270.1	2.9e-07	47.54	sequence-specific DNA binding transcription factors;transcription regulators	[more]
AT2G43060.1	3.0e-04	44.26	ILI1 binding bHLH 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33124:SF39	TRANSCRIPTION FACTOR UPBEAT1	coord: 6..65
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 6..65
IPR044549	Transcription factor IBH1-like, bHLH domain	CDD	cd11444	bHLH_AtIBH1_like	coord: 8..60 e-value: 1.44428E-12 score: 54.1656
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 17..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g16230.1	Cp4.1LG02g16230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:2000280	regulation of root development
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000976	transcription cis-regulatory region binding