Cp4.1LG02g15980 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG02g15980
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptiontranscription factor MYB78-like
LocationCp4.1LG02: 13064958 .. 13065281 (-)
RNA-Seq ExpressionCp4.1LG02g15980
SyntenyCp4.1LG02g15980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGACATGTTTGGATCCCTCGCATGGTCGAGCGGATCACGGCCACTTCGAGTCCTTTACCGTCATTGCCACCGCCATGCATCGACATCTCCACGTCAACTTCAATGGTTTTTGAAACTACATGGGCAAACCCAAATGACAATAACGTCCCTGCCAATGTGTCGGCGTCGTCTTCCGACGTGTCGGATTTGACGGTTGTGGATGGGTCGGGTTGGGATGACGAATTCGGGTCGGAATGGTGGGAAGGAGACGGAGTTGACTCGTTAGAGAGCTTGTGGACGGAAGAAAACATTTGTTTCTTACAGCAACAGCTCTTTGACTAG

mRNA sequence

ATGAGACATGTTTGGATCCCTCGCATGGTCGAGCGGATCACGGCCACTTCGAGTCCTTTACCGTCATTGCCACCGCCATGCATCGACATCTCCACGTCAACTTCAATGGTTTTTGAAACTACATGGGCAAACCCAAATGACAATAACGTCCCTGCCAATGTGTCGGCGTCGTCTTCCGACGTGTCGGATTTGACGGTTGTGGATGGGTCGGGTTGGGATGACGAATTCGGGTCGGAATGGTGGGAAGGAGACGGAGTTGACTCGTTAGAGAGCTTGTGGACGGAAGAAAACATTTGTTTCTTACAGCAACAGCTCTTTGACTAG

Coding sequence (CDS)

ATGAGACATGTTTGGATCCCTCGCATGGTCGAGCGGATCACGGCCACTTCGAGTCCTTTACCGTCATTGCCACCGCCATGCATCGACATCTCCACGTCAACTTCAATGGTTTTTGAAACTACATGGGCAAACCCAAATGACAATAACGTCCCTGCCAATGTGTCGGCGTCGTCTTCCGACGTGTCGGATTTGACGGTTGTGGATGGGTCGGGTTGGGATGACGAATTCGGGTCGGAATGGTGGGAAGGAGACGGAGTTGACTCGTTAGAGAGCTTGTGGACGGAAGAAAACATTTGTTTCTTACAGCAACAGCTCTTTGACTAG

Protein sequence

MRHVWIPRMVERITATSSPLPSLPPPCIDISTSTSMVFETTWANPNDNNVPANVSASSSDVSDLTVVDGSGWDDEFGSEWWEGDGVDSLESLWTEENICFLQQQLFD
Homology
[Close]
BLAST of Cp4.1LG02g15980 vs. NCBI nr
Match: XP_022998511.1 (transcription factor MYB78-like [Cucurbita maxima])

HSP 1 Score: 216 bits (549), Expect = 7.38e-69
Identity = 103/107 (96.26%), Postives = 105/107 (98.13%), Query Frame = 0 

Query: 1   MRHVWIPRMVERITATSSPLPSLPPPCIDISTSTSMVFETTWANPNDNNVPANVSASSSD 60
           MRHVWIPRMVERITATSSPLPSLPPPCIDISTSTS VFETTWANPNDNN+PANVSASSSD
Sbjct: 124 MRHVWIPRMVERITATSSPLPSLPPPCIDISTSTSTVFETTWANPNDNNIPANVSASSSD 183

Query: 61  VSDLTVVDGSGWDDEFGSEWWEGDGVDSLESLWTEENICFLQQQLFD 107
           VSDLTVVDGSGWD+ FGSEWWEGDGVDSLESLWTEENICFLQQQLFD
Sbjct: 184 VSDLTVVDGSGWDEGFGSEWWEGDGVDSLESLWTEENICFLQQQLFD 230

[Close]
BLAST of Cp4.1LG02g15980 vs. NCBI nr
Match: KAG6606922.1 (Transcription factor MYB2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 212 bits (539), Expect = 2.44e-67
Identity = 103/107 (96.26%), Postives = 104/107 (97.20%), Query Frame = 0 

Query: 1   MRHVWIPRMVERITATSSPLPSLPPPCIDISTSTSMVFETTWANPNDNNVPANVSASSSD 60
           MRHVWIPRMVERITATSSPLPSLPPPCIDISTSTSMVFETTWANPNDNNVPANVSASSSD
Sbjct: 124 MRHVWIPRMVERITATSSPLPSLPPPCIDISTSTSMVFETTWANPNDNNVPANVSASSSD 183

Query: 61  VSDLTVVDGSGWDDEFGSEWWEGDGVDSLESLWTEENICFLQQQLFD 107
           VSDLT VDGSGWD+ FGSEW EGDGVDSLESLWTEENICFLQQQLFD
Sbjct: 184 VSDLTAVDGSGWDEGFGSEWLEGDGVDSLESLWTEENICFLQQQLFD 230

[Close]
BLAST of Cp4.1LG02g15980 vs. NCBI nr
Match: XP_022949547.1 (transcription factor MYB78-like [Cucurbita moschata] >KAG7036626.1 Transcription factor MYB2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204 bits (518), Expect = 3.79e-64
Identity = 99/107 (92.52%), Postives = 102/107 (95.33%), Query Frame = 0 

Query: 1   MRHVWIPRMVERITATSSPLPSLPPPCIDISTSTSMVFETTWANPNDNNVPANVSASSSD 60
           MRHVWIPRMVERITATSSPL SLPPPCIDISTSTS+VFETTWANPNDNN PANVSASSSD
Sbjct: 124 MRHVWIPRMVERITATSSPLSSLPPPCIDISTSTSVVFETTWANPNDNNFPANVSASSSD 183

Query: 61  VSDLTVVDGSGWDDEFGSEWWEGDGVDSLESLWTEENICFLQQQLFD 107
           VSDLT VDGSGWD+ FGSEW EGDGVDSLESLWTEENICFL+QQLFD
Sbjct: 184 VSDLTAVDGSGWDEGFGSEWLEGDGVDSLESLWTEENICFLRQQLFD 230

[Close]
BLAST of Cp4.1LG02g15980 vs. NCBI nr
Match: XP_022157014.1 (transcription factor MYB78-like [Momordica charantia])

HSP 1 Score: 120 bits (300), Expect = 3.86e-31
Identity = 70/113 (61.95%), Postives = 83/113 (73.45%), Query Frame = 0 

Query: 1   MRHVWIPRMVERITATSSPLPSLPPPCIDISTSTSMV-FETTWANPNDNN--VPANVSAS 60
           MR VWIPR+VERITA S      PP   + STS S    E+TWANPN+NN  +  ++SA+
Sbjct: 123 MRLVWIPRLVERITAASG---ESPPLMAESSTSASTTNTESTWANPNNNNNDILTDMSAT 182

Query: 61  SSDVSDLTV--VDGSGWDDEFGSEWWEGDGVDS-LESLWTEENICFLQQQLFD 107
           SSD S++T   V GSGW+D FG+ WW+GDGVDS LESLWTEENI FLQQQLFD
Sbjct: 183 SSDSSNVTAGEVCGSGWEDGFGAGWWDGDGVDSSLESLWTEENISFLQQQLFD 232

[Close]
BLAST of Cp4.1LG02g15980 vs. NCBI nr
Match: XP_038905628.1 (transcription factor MYB2-like [Benincasa hispida])

HSP 1 Score: 100 bits (249), Expect = 1.40e-23
Identity = 64/113 (56.64%), Postives = 69/113 (61.06%), Query Frame = 0 

Query: 1   MRHVWIPRMVERITATS-----SPLPSLPPPCIDISTSTSMVFETTWANPNDNNVPANVS 60
           MR VWIPR+VERI A S     SP   L PPC D  TS       TW   +   VP ++S
Sbjct: 125 MRLVWIPRLVERIEAASVQSLSSPPSLLLPPCTDADTSM-----LTWDYKSI--VPEHMS 184

Query: 61  ASSSDVSDLTVVDGSGWDDEFGSEWWEGDGVDS-LESLWTEENICFLQQQLFD 107
            S SD SD   VDG      FG+ WWEGDGVDS LESLWTEENICFLQQ LFD
Sbjct: 185 GSCSDTSDSMAVDG------FGAGWWEGDGVDSSLESLWTEENICFLQQHLFD 224

[Close]
BLAST of Cp4.1LG02g15980 vs. ExPASy TrEMBL
Match: A0A6J1KAD5 (transcription factor MYB78-like OS=Cucurbita maxima OX=3661 GN=LOC111493124 PE=4 SV=1)

HSP 1 Score: 216 bits (549), Expect = 3.57e-69
Identity = 103/107 (96.26%), Postives = 105/107 (98.13%), Query Frame = 0 

Query: 1   MRHVWIPRMVERITATSSPLPSLPPPCIDISTSTSMVFETTWANPNDNNVPANVSASSSD 60
           MRHVWIPRMVERITATSSPLPSLPPPCIDISTSTS VFETTWANPNDNN+PANVSASSSD
Sbjct: 124 MRHVWIPRMVERITATSSPLPSLPPPCIDISTSTSTVFETTWANPNDNNIPANVSASSSD 183

Query: 61  VSDLTVVDGSGWDDEFGSEWWEGDGVDSLESLWTEENICFLQQQLFD 107
           VSDLTVVDGSGWD+ FGSEWWEGDGVDSLESLWTEENICFLQQQLFD
Sbjct: 184 VSDLTVVDGSGWDEGFGSEWWEGDGVDSLESLWTEENICFLQQQLFD 230

[Close]
BLAST of Cp4.1LG02g15980 vs. ExPASy TrEMBL
Match: A0A6J1GCD0 (transcription factor MYB78-like OS=Cucurbita moschata OX=3662 GN=LOC111452862 PE=4 SV=1)

HSP 1 Score: 204 bits (518), Expect = 1.84e-64
Identity = 99/107 (92.52%), Postives = 102/107 (95.33%), Query Frame = 0 

Query: 1   MRHVWIPRMVERITATSSPLPSLPPPCIDISTSTSMVFETTWANPNDNNVPANVSASSSD 60
           MRHVWIPRMVERITATSSPL SLPPPCIDISTSTS+VFETTWANPNDNN PANVSASSSD
Sbjct: 124 MRHVWIPRMVERITATSSPLSSLPPPCIDISTSTSVVFETTWANPNDNNFPANVSASSSD 183

Query: 61  VSDLTVVDGSGWDDEFGSEWWEGDGVDSLESLWTEENICFLQQQLFD 107
           VSDLT VDGSGWD+ FGSEW EGDGVDSLESLWTEENICFL+QQLFD
Sbjct: 184 VSDLTAVDGSGWDEGFGSEWLEGDGVDSLESLWTEENICFLRQQLFD 230

[Close]
BLAST of Cp4.1LG02g15980 vs. ExPASy TrEMBL
Match: A0A6J1DVA2 (transcription factor MYB78-like OS=Momordica charantia OX=3673 GN=LOC111023840 PE=4 SV=1)

HSP 1 Score: 120 bits (300), Expect = 1.87e-31
Identity = 70/113 (61.95%), Postives = 83/113 (73.45%), Query Frame = 0 

Query: 1   MRHVWIPRMVERITATSSPLPSLPPPCIDISTSTSMV-FETTWANPNDNN--VPANVSAS 60
           MR VWIPR+VERITA S      PP   + STS S    E+TWANPN+NN  +  ++SA+
Sbjct: 123 MRLVWIPRLVERITAASG---ESPPLMAESSTSASTTNTESTWANPNNNNNDILTDMSAT 182

Query: 61  SSDVSDLTV--VDGSGWDDEFGSEWWEGDGVDS-LESLWTEENICFLQQQLFD 107
           SSD S++T   V GSGW+D FG+ WW+GDGVDS LESLWTEENI FLQQQLFD
Sbjct: 183 SSDSSNVTAGEVCGSGWEDGFGAGWWDGDGVDSSLESLWTEENISFLQQQLFD 232

[Close]
BLAST of Cp4.1LG02g15980 vs. ExPASy TrEMBL
Match: A0A6J1J7Q6 (transcription factor MYB108-like OS=Cucurbita maxima OX=3661 GN=LOC111482031 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.93e-21
Identity = 59/108 (54.63%), Postives = 67/108 (62.04%), Query Frame = 0 

Query: 1   MRHVWIPRMVERITATSSPLPSLPPPCIDISTSTSMVFETTWANPNDNNVPANVSASSSD 60
           MR VWIPR+VERI ATS    SLP  C + STST  + E+TW   +DN+V A        
Sbjct: 125 MRLVWIPRLVERIAATSGQ--SLPA-CTETSTSTPTISESTW---DDNSVNA-------- 184

Query: 61  VSDLTVVDGSGWDDEFGSEWWEGDGVDS-LESLWTEENICFLQQQLFD 107
                  D SGW D F + WWE DGV+S  ESLWTEENI FLQQQLFD
Sbjct: 185 -------DTSGWGDGFEAGWWEEDGVESSFESLWTEENIRFLQQQLFD 211

[Close]
BLAST of Cp4.1LG02g15980 vs. ExPASy TrEMBL
Match: A0A6J1FAH4 (LOW QUALITY PROTEIN: transcription factor MYB108-like OS=Cucurbita moschata OX=3662 GN=LOC111442286 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.80e-18
Identity = 59/108 (54.63%), Postives = 68/108 (62.96%), Query Frame = 0 

Query: 1   MRHVWIPRMVERITATSSPLPSLPPPCIDISTSTSMVFETTWANPNDNNVPANVSASSSD 60
           MR VWIP +VERI ATS    SLP  C + STST  + E+T    +DN+V  +VSAS SD
Sbjct: 126 MRLVWIPHLVERIAATSGQ--SLPA-CTETSTSTPTISESTL---DDNSVNVDVSASCSD 185

Query: 61  VSDLTVVDGSGWDDEFGSEWWEGDGVDS-LESLWTEENICFLQQQLFD 107
            SD        W D F + WWEGD V+S  ESLW EENI FLQQ LFD
Sbjct: 186 TSD--------WGDGFEAGWWEGDEVESSFESLWIEENIHFLQQ-LFD 218

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g15980 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG02g15980 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022998511.17.38e-6996.26transcription factor MYB78-like [Cucurbita maxima][more]
KAG6606922.12.44e-6796.26Transcription factor MYB2, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022949547.13.79e-6492.52transcription factor MYB78-like [Cucurbita moschata] >KAG7036626.1 Transcription... [more]
XP_022157014.13.86e-3161.95transcription factor MYB78-like [Momordica charantia][more]
XP_038905628.11.40e-2356.64transcription factor MYB2-like [Benincasa hispida][more]
BLAST of Cp4.1LG02g15980 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KAD53.57e-6996.26transcription factor MYB78-like OS=Cucurbita maxima OX=3661 GN=LOC111493124 PE=4... [more]
A0A6J1GCD01.84e-6492.52transcription factor MYB78-like OS=Cucurbita moschata OX=3662 GN=LOC111452862 PE... [more]
A0A6J1DVA21.87e-3161.95transcription factor MYB78-like OS=Momordica charantia OX=3673 GN=LOC111023840 P... [more]
A0A6J1J7Q66.93e-2154.63transcription factor MYB108-like OS=Cucurbita maxima OX=3661 GN=LOC111482031 PE=... [more]
A0A6J1FAH43.80e-1854.63LOW QUALITY PROTEIN: transcription factor MYB108-like OS=Cucurbita moschata OX=3... [more]
BLAST of Cp4.1LG02g15980 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g15980.1Cp4.1LG02g15980.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0043565 sequence-specific DNA binding