Cp4.1LG02g15910 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g15910
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Cp4.1LG02: 13109098 .. 13109895 (-)
RNA-Seq Expression	Cp4.1LG02g15910
Synteny	Cp4.1LG02g15910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCCATGGCTCTTTCATCTACCTTCACTGGAAAAGCTGTTCCTTTGAATGCACCAACCGAGCTGTTTTCCTCGGTTCGCAGCAATGGAAGAGTCTCAATGAGGAAGTCTGGAAAGCCAGCTTCTTCCTCAGGCAGCCCATGGTATGGTCCCGACCGTGTTAAGTACCTCGGACCATTCTCTGGTGAGCCTCCATCTTACCTGACAGGAGAATTCCCTGGTGATTATGGTTGGGACACTGCAGGTCTATCAGCTGACCCTGAGACCTTCGCTAAGAACCGAGAGCTCGAAGTGATTCACAGTAGATGGGCCATGCTTGGGGCTCTTGGATGTGTATTCCCAGAGCTTCTTTCCAGAAATGGAGTCAAGTTTGGTGAAGCAGTTTGGTTCAAGGCTGGTTCCCAAATCTTCAGTGAGGGTGGCCTTGACTATCTTGGAAACCCAAGTCTTGTTCATGCACAGAGCATTTTGGCCATTTGGGCATGTCAAGTAGTGCTTATGGGTGCAGTTGAAGGTTACCGTATTGCAGGAGGACCTCTTGGAGAAATTACCGATCCCATCTACCCAGGTGGCAGCTTTGATCCCCTCGGGCTGGCCGATGATCCAGAGGCATTTGCAGAGCTTAAGGTGAAAGAACTTAAGAACGGTCGTCTCGCAATGTTTTCCATGTTCGGGTACTTTGTGCAGGCCATTGTAACAGGAAAAGGTCCTTTGGAAAACCTCGCAGATCACCTTGCTGATCCTGTCAACAACAATGCATGGGCTTATGCTACCAACTTTGTACCTGGGAAGTGA

mRNA sequence

ATGGCAGCCATGGCTCTTTCATCTACCTTCACTGGAAAAGCTGTTCCTTTGAATGCACCAACCGAGCTGTTTTCCTCGGTTCGCAGCAATGGAAGAGTCTCAATGAGGAAGTCTGGAAAGCCAGCTTCTTCCTCAGGCAGCCCATGGTATGGTCCCGACCGTGTTAAGTACCTCGGACCATTCTCTGGTGAGCCTCCATCTTACCTGACAGGAGAATTCCCTGGTGATTATGGTTGGGACACTGCAGGTCTATCAGCTGACCCTGAGACCTTCGCTAAGAACCGAGAGCTCGAAGTGATTCACAGTAGATGGGCCATGCTTGGGGCTCTTGGATGTGTATTCCCAGAGCTTCTTTCCAGAAATGGAGTCAAGTTTGGTGAAGCAGTTTGGTTCAAGGCTGGTTCCCAAATCTTCAGTGAGGGTGGCCTTGACTATCTTGGAAACCCAAGTCTTGTTCATGCACAGAGCATTTTGGCCATTTGGGCATGTCAAGTAGTGCTTATGGGTGCAGTTGAAGGTTACCGTATTGCAGGAGGACCTCTTGGAGAAATTACCGATCCCATCTACCCAGGTGGCAGCTTTGATCCCCTCGGGCTGGCCGATGATCCAGAGGCATTTGCAGAGCTTAAGGTGAAAGAACTTAAGAACGGTCGTCTCGCAATGTTTTCCATGTTCGGGTACTTTGTGCAGGCCATTGTAACAGGAAAAGGTCCTTTGGAAAACCTCGCAGATCACCTTGCTGATCCTGTCAACAACAATGCATGGGCTTATGCTACCAACTTTGTACCTGGGAAGTGA

Coding sequence (CDS)

ATGGCAGCCATGGCTCTTTCATCTACCTTCACTGGAAAAGCTGTTCCTTTGAATGCACCAACCGAGCTGTTTTCCTCGGTTCGCAGCAATGGAAGAGTCTCAATGAGGAAGTCTGGAAAGCCAGCTTCTTCCTCAGGCAGCCCATGGTATGGTCCCGACCGTGTTAAGTACCTCGGACCATTCTCTGGTGAGCCTCCATCTTACCTGACAGGAGAATTCCCTGGTGATTATGGTTGGGACACTGCAGGTCTATCAGCTGACCCTGAGACCTTCGCTAAGAACCGAGAGCTCGAAGTGATTCACAGTAGATGGGCCATGCTTGGGGCTCTTGGATGTGTATTCCCAGAGCTTCTTTCCAGAAATGGAGTCAAGTTTGGTGAAGCAGTTTGGTTCAAGGCTGGTTCCCAAATCTTCAGTGAGGGTGGCCTTGACTATCTTGGAAACCCAAGTCTTGTTCATGCACAGAGCATTTTGGCCATTTGGGCATGTCAAGTAGTGCTTATGGGTGCAGTTGAAGGTTACCGTATTGCAGGAGGACCTCTTGGAGAAATTACCGATCCCATCTACCCAGGTGGCAGCTTTGATCCCCTCGGGCTGGCCGATGATCCAGAGGCATTTGCAGAGCTTAAGGTGAAAGAACTTAAGAACGGTCGTCTCGCAATGTTTTCCATGTTCGGGTACTTTGTGCAGGCCATTGTAACAGGAAAAGGTCCTTTGGAAAACCTCGCAGATCACCTTGCTGATCCTGTCAACAACAATGCATGGGCTTATGCTACCAACTTTGTACCTGGGAAGTGA

Protein sequence

MAAMALSSTFTGKAVPLNAPTELFSSVRSNGRVSMRKSGKPASSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGYFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK

Homology

[Close]

BLAST of Cp4.1LG02g15910 vs. ExPASy Swiss-Prot
Match: P08221 (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 479.9 bits (1234), Expect = 1.8e-134
Identity = 232/259 (89.58%), Postives = 241/259 (93.05%), Query Frame = 0


Query: 9   TFTGKAVPL--NAPTELFSSVRSNGRVSMRKSGKPASSSGSPWYGPDRVKYLGPFSGEPP 68
           T  G+AV L  NAP      ++ N + +MRK+   + SSGSPWYGPDRVKYLGPFSGEPP
Sbjct: 2   TLAGQAVKLSPNAP-----EIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPP 61

Query: 69  SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG 128
           SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG
Sbjct: 62  SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG 121

Query: 129 EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITD 188
           EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGE+TD
Sbjct: 122 EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTD 181

Query: 189 PIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGYFVQAIVTGKGPLENLADHL 248
           PIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG+FVQAIVTGKGPLENLADHL
Sbjct: 182 PIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 241

Query: 249 ADPVNNNAWAYATNFVPGK 266
           ADPVNNNAWAYATNFVPGK
Sbjct: 242 ADPVNNNAWAYATNFVPGK 255

[Close]

BLAST of Cp4.1LG02g15910 vs. ExPASy Swiss-Prot
Match: P07369 (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB3C PE=3 SV=1)

HSP 1 Score: 477.2 bits (1227), Expect = 1.2e-133
Identity = 234/267 (87.64%), Postives = 247/267 (92.51%), Query Frame = 0


Query: 2   AAMAL-SSTFTGKAVPLNAPTELFSSVRSNGRVSMRKSGKPA--SSSGSPWYGPDRVKYL 61
           + MAL SSTF GKAV L+  +   S +  NGRV+MRK+   A  +SSGSPWYGPDRVKYL
Sbjct: 4   STMALSSSTFAGKAVKLSPSS---SEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYL 63

Query: 62  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 121
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 64  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 123

Query: 122 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 181
           +RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG
Sbjct: 124 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 183

Query: 182 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGYFVQAIVTGKGP 241
           GPLGE+ DP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFG+FVQAIVTGKGP
Sbjct: 184 GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 243

Query: 242 LENLADHLADPVNNNAWAYATNFVPGK 266
           LENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 244 LENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of Cp4.1LG02g15910 vs. ExPASy Swiss-Prot
Match: P27497 (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays OX=4577 GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 476.5 bits (1225), Expect = 2.0e-133
Identity = 232/268 (86.57%), Postives = 247/268 (92.16%), Query Frame = 0


Query: 2   AAMALSST-FTGKAVPLNAPTELFSSVRSNGRVSMRKS---GKPASSSGSPWYGPDRVKY 61
           + MALSST F GKAV  N P+ LF       RV+MRK+    KPA+SSGSPWYGPDRV Y
Sbjct: 4   STMALSSTAFAGKAV--NVPSSLF----GEARVTMRKTAAKAKPAASSGSPWYGPDRVLY 63

Query: 62  LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 121
           LGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL
Sbjct: 64  LGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 123

Query: 122 LSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA 181
           L+RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGA+EGYR+A
Sbjct: 124 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVA 183

Query: 182 GGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGYFVQAIVTGKG 241
           GGPLGE+ DP+YPGG+FDPLGLADDPEAFA++KVKELKNGRLAMFSMFG+FVQAIVTGKG
Sbjct: 184 GGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKG 243

Query: 242 PLENLADHLADPVNNNAWAYATNFVPGK 266
           PLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 244 PLENLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Cp4.1LG02g15910 vs. ExPASy Swiss-Prot
Match: P27492 (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum OX=4097 GN=CAB16 PE=2 SV=1)

HSP 1 Score: 475.7 bits (1223), Expect = 3.4e-133
Identity = 230/263 (87.45%), Postives = 243/263 (92.40%), Query Frame = 0


Query: 5   ALSSTFTGKAVPLNAPTELFSSVRSNGRVSMRKSGKPAS--SSGSPWYGPDRVKYLGPFS 64
           ALSS F GKAV L+  +   S V  NG+V+MRK+   A   SSGSPWYGPDRVKYLGPFS
Sbjct: 7   ALSSPFAGKAVKLSPSS---SEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFS 66

Query: 65  GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNG 124
           GE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNG
Sbjct: 67  GESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 126

Query: 125 VKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLG 184
           VKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR+AGGPLG
Sbjct: 127 VKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLG 186

Query: 185 EITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGYFVQAIVTGKGPLENL 244
           E+ DP+YPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFG+FVQAIVTGKGPLENL
Sbjct: 187 EVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 246

Query: 245 ADHLADPVNNNAWAYATNFVPGK 266
           ADHLADPVNNNAW+YATNFVPGK
Sbjct: 247 ADHLADPVNNNAWSYATNFVPGK 266

[Close]

BLAST of Cp4.1LG02g15910 vs. ExPASy Swiss-Prot
Match: P27495 (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum OX=4097 GN=CAB40 PE=2 SV=1)

HSP 1 Score: 474.2 bits (1219), Expect = 9.9e-133
Identity = 231/267 (86.52%), Postives = 246/267 (92.13%), Query Frame = 0


Query: 2   AAMALSS-TFTGKAVPLNAPTELFSSVRSNGRVSMRKSGKPAS--SSGSPWYGPDRVKYL 61
           + MALSS +F GKAV L+  +   S +  NG+V+MRK+   A   SSGSPWYGPDRVKYL
Sbjct: 4   STMALSSPSFAGKAVKLSPSS---SEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYL 63

Query: 62  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 121
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 64  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 123

Query: 122 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 181
           +RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR+AG
Sbjct: 124 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 183

Query: 182 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGYFVQAIVTGKGP 241
           GPLGE+ DP+YPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFG+FVQAIVTGKGP
Sbjct: 184 GPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 243

Query: 242 LENLADHLADPVNNNAWAYATNFVPGK 266
           LENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 244 LENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of Cp4.1LG02g15910 vs. NCBI nr
Match: XP_022948926.1 (chlorophyll a-b binding protein of LHCII type 1-like [Cucurbita moschata] >XP_023524829.1 chlorophyll a-b binding protein of LHCII type 1-like [Cucurbita pepo subsp. pepo] >KAG6606914.1 Chlorophyll a-b binding protein 3C, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 542 bits (1396), Expect = 1.50e-194
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0


Query: 1   MAAMALSSTFTGKAVPLNAPTELFSSVRSNGRVSMRKSGKPASSSGSPWYGPDRVKYLGP 60
           MAAMALSSTFTGKAVPLNAPTELFSSVRSNGRVSMRKSGKPASSSGSPWYGPDRVKYLGP
Sbjct: 1   MAAMALSSTFTGKAVPLNAPTELFSSVRSNGRVSMRKSGKPASSSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180

Query: 181 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGYFVQAIVTGKGPLE 240
           LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGYFVQAIVTGKGPLE
Sbjct: 181 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGYFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 265
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Cp4.1LG02g15910 vs. NCBI nr
Match: XP_022998479.1 (chlorophyll a-b binding protein of LHCII type 1 [Cucurbita maxima])

HSP 1 Score: 540 bits (1391), Expect = 8.68e-194
Identity = 263/265 (99.25%), Postives = 265/265 (100.00%), Query Frame = 0


Query: 1   MAAMALSSTFTGKAVPLNAPTELFSSVRSNGRVSMRKSGKPASSSGSPWYGPDRVKYLGP 60
           MAAMALSSTFTGKAVPLNAPTELFSSVRSNGRVSMRKSGKPASSSGSPWYGPDRVKYLGP
Sbjct: 1   MAAMALSSTFTGKAVPLNAPTELFSSVRSNGRVSMRKSGKPASSSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ+VLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQIVLMGAVEGYRIAGGP 180

Query: 181 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGYFVQAIVTGKGPLE 240
           LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG+FVQAIVTGKGPLE
Sbjct: 181 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 265
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Cp4.1LG02g15910 vs. NCBI nr
Match: XP_038903667.1 (chlorophyll a-b binding protein of LHCII type 1-like [Benincasa hispida])

HSP 1 Score: 530 bits (1366), Expect = 5.63e-190
Identity = 258/265 (97.36%), Postives = 263/265 (99.25%), Query Frame = 0


Query: 1   MAAMALSSTFTGKAVPLNAPTELFSSVRSNGRVSMRKSGKPASSSGSPWYGPDRVKYLGP 60
           MAAMALSSTFTGKAVPLNAPTEL SSVRSNGRVSMR+SGKPA+SSGSPWYGPDRVKYLGP
Sbjct: 1   MAAMALSSTFTGKAVPLNAPTELSSSVRSNGRVSMRRSGKPAASSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA QVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180

Query: 181 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGYFVQAIVTGKGPLE 240
           LGE+TDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG+FVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 265
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Cp4.1LG02g15910 vs. NCBI nr
Match: XP_008447450.1 (PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo] >KAA0038103.1 chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo var. makuwa] >TYK20505.1 chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 526 bits (1354), Expect = 3.80e-188
Identity = 256/265 (96.60%), Postives = 260/265 (98.11%), Query Frame = 0


Query: 1   MAAMALSSTFTGKAVPLNAPTELFSSVRSNGRVSMRKSGKPASSSGSPWYGPDRVKYLGP 60
           MAAMALSSTFTGK VPLNAPTEL SSVRSNGR+SMRKSGKPA+SSGSPWYGPDRVKYLGP
Sbjct: 1   MAAMALSSTFTGKVVPLNAPTELSSSVRSNGRISMRKSGKPAASSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYL GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLKGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180
           NGV FGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA QVVLMGAVEGYRIAGGP
Sbjct: 121 NGVNFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180

Query: 181 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGYFVQAIVTGKGPLE 240
           LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG+FVQAIVTGKGPLE
Sbjct: 181 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 265
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Cp4.1LG02g15910 vs. NCBI nr
Match: XP_022159070.1 (chlorophyll a-b binding protein of LHCII type 1 [Momordica charantia])

HSP 1 Score: 524 bits (1349), Expect = 2.20e-187
Identity = 254/265 (95.85%), Postives = 261/265 (98.49%), Query Frame = 0


Query: 1   MAAMALSSTFTGKAVPLNAPTELFSSVRSNGRVSMRKSGKPASSSGSPWYGPDRVKYLGP 60
           MAAMAL+STFTGKAVPL+APTEL SSV SNGRVSMR+SG+PA+SSGSPWYGPDRVKYLGP
Sbjct: 1   MAAMALTSTFTGKAVPLSAPTELSSSVGSNGRVSMRRSGRPAASSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYL GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLKGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNP LVHAQSILAIWACQVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPGLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180

Query: 181 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGYFVQAIVTGKGPLE 240
           LGE+TDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG+FVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 265
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Cp4.1LG02g15910 vs. ExPASy TrEMBL
Match: A0A6J1GAK0 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452433 PE=3 SV=1)

HSP 1 Score: 542 bits (1396), Expect = 7.27e-195
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0


Query: 1   MAAMALSSTFTGKAVPLNAPTELFSSVRSNGRVSMRKSGKPASSSGSPWYGPDRVKYLGP 60
           MAAMALSSTFTGKAVPLNAPTELFSSVRSNGRVSMRKSGKPASSSGSPWYGPDRVKYLGP
Sbjct: 1   MAAMALSSTFTGKAVPLNAPTELFSSVRSNGRVSMRKSGKPASSSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180

Query: 181 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGYFVQAIVTGKGPLE 240
           LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGYFVQAIVTGKGPLE
Sbjct: 181 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGYFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 265
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Cp4.1LG02g15910 vs. ExPASy TrEMBL
Match: A0A6J1KEF6 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111493100 PE=3 SV=1)

HSP 1 Score: 540 bits (1391), Expect = 4.20e-194
Identity = 263/265 (99.25%), Postives = 265/265 (100.00%), Query Frame = 0


Query: 1   MAAMALSSTFTGKAVPLNAPTELFSSVRSNGRVSMRKSGKPASSSGSPWYGPDRVKYLGP 60
           MAAMALSSTFTGKAVPLNAPTELFSSVRSNGRVSMRKSGKPASSSGSPWYGPDRVKYLGP
Sbjct: 1   MAAMALSSTFTGKAVPLNAPTELFSSVRSNGRVSMRKSGKPASSSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ+VLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQIVLMGAVEGYRIAGGP 180

Query: 181 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGYFVQAIVTGKGPLE 240
           LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG+FVQAIVTGKGPLE
Sbjct: 181 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 265
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Cp4.1LG02g15910 vs. ExPASy TrEMBL
Match: A0A5D3DAB9 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00790 PE=3 SV=1)

HSP 1 Score: 526 bits (1354), Expect = 1.84e-188
Identity = 256/265 (96.60%), Postives = 260/265 (98.11%), Query Frame = 0


Query: 1   MAAMALSSTFTGKAVPLNAPTELFSSVRSNGRVSMRKSGKPASSSGSPWYGPDRVKYLGP 60
           MAAMALSSTFTGK VPLNAPTEL SSVRSNGR+SMRKSGKPA+SSGSPWYGPDRVKYLGP
Sbjct: 1   MAAMALSSTFTGKVVPLNAPTELSSSVRSNGRISMRKSGKPAASSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYL GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLKGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180
           NGV FGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA QVVLMGAVEGYRIAGGP
Sbjct: 121 NGVNFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180

Query: 181 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGYFVQAIVTGKGPLE 240
           LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG+FVQAIVTGKGPLE
Sbjct: 181 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 265
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Cp4.1LG02g15910 vs. ExPASy TrEMBL
Match: A0A1S3BHH5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489893 PE=3 SV=1)

HSP 1 Score: 526 bits (1354), Expect = 1.84e-188
Identity = 256/265 (96.60%), Postives = 260/265 (98.11%), Query Frame = 0


Query: 1   MAAMALSSTFTGKAVPLNAPTELFSSVRSNGRVSMRKSGKPASSSGSPWYGPDRVKYLGP 60
           MAAMALSSTFTGK VPLNAPTEL SSVRSNGR+SMRKSGKPA+SSGSPWYGPDRVKYLGP
Sbjct: 1   MAAMALSSTFTGKVVPLNAPTELSSSVRSNGRISMRKSGKPAASSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYL GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLKGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180
           NGV FGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA QVVLMGAVEGYRIAGGP
Sbjct: 121 NGVNFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180

Query: 181 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGYFVQAIVTGKGPLE 240
           LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG+FVQAIVTGKGPLE
Sbjct: 181 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 265
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Cp4.1LG02g15910 vs. ExPASy TrEMBL
Match: A0A6J1DXL6 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111025509 PE=3 SV=1)

HSP 1 Score: 524 bits (1349), Expect = 1.07e-187
Identity = 254/265 (95.85%), Postives = 261/265 (98.49%), Query Frame = 0


Query: 1   MAAMALSSTFTGKAVPLNAPTELFSSVRSNGRVSMRKSGKPASSSGSPWYGPDRVKYLGP 60
           MAAMAL+STFTGKAVPL+APTEL SSV SNGRVSMR+SG+PA+SSGSPWYGPDRVKYLGP
Sbjct: 1   MAAMALTSTFTGKAVPLSAPTELSSSVGSNGRVSMRRSGRPAASSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYL GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLKGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNP LVHAQSILAIWACQVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPGLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180

Query: 181 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGYFVQAIVTGKGPLE 240
           LGE+TDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG+FVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 265
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Cp4.1LG02g15910 vs. TAIR 10
Match: AT2G34430.1 (light-harvesting chlorophyll-protein complex II subunit B1 )

HSP 1 Score: 461.5 bits (1186), Expect = 4.7e-130
Identity = 228/267 (85.39%), Postives = 244/267 (91.39%), Query Frame = 0


Query: 2   AAMALSS-TFTGKAVPLN-APTELFSSVRSNGRVSMRKSGKPASSSGSPWYGPDRVKYLG 61
           + MALSS   TGKAV L+ A +E+F +    GR++MRK+ KP   SGSPWYG DRVKYLG
Sbjct: 4   STMALSSPALTGKAVKLSPAASEVFGT----GRITMRKASKPTGPSGSPWYGSDRVKYLG 63

Query: 62  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 121
           PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 64  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 123

Query: 122 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG- 181
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSLVHAQSILAIWA QV+LMGAVEGYR+AG 
Sbjct: 124 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGD 183

Query: 182 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGYFVQAIVTGKGP 241
           GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFG+FVQAIVTGKGP
Sbjct: 184 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 243

Query: 242 LENLADHLADPVNNNAWAYATNFVPGK 266
           LENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 244 LENLADHLADPVNNNAWAFATNFVPGK 266

[Close]

BLAST of Cp4.1LG02g15910 vs. TAIR 10
Match: AT2G34420.1 (photosystem II light harvesting complex gene B1B2 )

HSP 1 Score: 454.9 bits (1169), Expect = 4.4e-128
Identity = 228/267 (85.39%), Postives = 240/267 (89.89%), Query Frame = 0


Query: 2   AAMALSS-TFTGKAVPLNAPTELFSSVRSNGRVSMRKS-GKPASSSGSPWYGPDRVKYLG 61
           + MALSS  F GKAV   A     S V  +GRV+MRK+  KP   SGSPWYG DRVKYLG
Sbjct: 4   STMALSSPAFAGKAVKPAA-----SDVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 63

Query: 62  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 121
           PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 64  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 123

Query: 122 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG- 181
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSLVHAQSILAIWA QV+LMGAVEGYR+AG 
Sbjct: 124 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGD 183

Query: 182 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGYFVQAIVTGKGP 241
           GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFG+FVQAIVTGKGP
Sbjct: 184 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 243

Query: 242 LENLADHLADPVNNNAWAYATNFVPGK 266
           LENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 244 LENLADHLADPVNNNAWAFATNFVPGK 265

[Close]

BLAST of Cp4.1LG02g15910 vs. TAIR 10
Match: AT1G29930.1 (chlorophyll A/B binding protein 1 )

HSP 1 Score: 453.4 bits (1165), Expect = 1.3e-127
Identity = 226/267 (84.64%), Postives = 240/267 (89.89%), Query Frame = 0


Query: 2   AAMALSS-TFTGKAVPLNAPTELFSSVRSNGRVSMRKS-GKPASSSGSPWYGPDRVKYLG 61
           + MALSS  F GKAV L+      S V  +GRV+MRK+  KP   SGSPWYG DRVKYLG
Sbjct: 4   STMALSSPAFAGKAVKLSPAA---SEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 63

Query: 62  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 121
           PFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 64  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 123

Query: 122 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG- 181
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSLVHAQSILAIWA QV+LMGAVEGYR+AG 
Sbjct: 124 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGN 183

Query: 182 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGYFVQAIVTGKGP 241
           GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFG+FVQAIVTGKGP
Sbjct: 184 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 243

Query: 242 LENLADHLADPVNNNAWAYATNFVPGK 266
           +ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 244 IENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of Cp4.1LG02g15910 vs. TAIR 10
Match: AT1G29910.1 (chlorophyll A/B binding protein 3 )

HSP 1 Score: 453.0 bits (1164), Expect = 1.7e-127
Identity = 226/267 (84.64%), Postives = 240/267 (89.89%), Query Frame = 0


Query: 2   AAMALSS-TFTGKAVPLNAPTELFSSVRSNGRVSMRKS-GKPASSSGSPWYGPDRVKYLG 61
           + MALSS  F GKAV L+      S V  +GRV+MRK+  KP   SGSPWYG DRVKYLG
Sbjct: 4   STMALSSPAFAGKAVNLSPAA---SEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 63

Query: 62  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 121
           PFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 64  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 123

Query: 122 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG- 181
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSLVHAQSILAIWA QV+LMGAVEGYR+AG 
Sbjct: 124 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGN 183

Query: 182 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGYFVQAIVTGKGP 241
           GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFG+FVQAIVTGKGP
Sbjct: 184 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 243

Query: 242 LENLADHLADPVNNNAWAYATNFVPGK 266
           +ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 244 IENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of Cp4.1LG02g15910 vs. TAIR 10
Match: AT1G29920.1 (chlorophyll A/B-binding protein 2 )

HSP 1 Score: 453.0 bits (1164), Expect = 1.7e-127
Identity = 226/267 (84.64%), Postives = 240/267 (89.89%), Query Frame = 0


Query: 2   AAMALSS-TFTGKAVPLNAPTELFSSVRSNGRVSMRKS-GKPASSSGSPWYGPDRVKYLG 61
           + MALSS  F GKAV L+      S V  +GRV+MRK+  KP   SGSPWYG DRVKYLG
Sbjct: 4   STMALSSPAFAGKAVNLSPAA---SEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 63

Query: 62  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 121
           PFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 64  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 123

Query: 122 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG- 181
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSLVHAQSILAIWA QV+LMGAVEGYR+AG 
Sbjct: 124 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGN 183

Query: 182 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGYFVQAIVTGKGP 241
           GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFG+FVQAIVTGKGP
Sbjct: 184 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 243

Query: 242 LENLADHLADPVNNNAWAYATNFVPGK 266
           +ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 244 IENLADHLADPVNNNAWAFATNFVPGK 267

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g15910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P08221	1.8e-134	89.58	Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cuc...	[more]
P07369	1.2e-133	87.64	Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum OX=408...	[more]
P27497	2.0e-133	86.57	Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays OX=4577 GN=CAB-M9 ...	[more]
P27492	3.4e-133	87.45	Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum OX=4097 G...	[more]
P27495	9.9e-133	86.52	Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum OX=4097 G...	[more]

BLAST of Cp4.1LG02g15910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948926.1	1.50e-194	100.00	chlorophyll a-b binding protein of LHCII type 1-like [Cucurbita moschata] >XP_02...	[more]
XP_022998479.1	8.68e-194	99.25	chlorophyll a-b binding protein of LHCII type 1 [Cucurbita maxima]	[more]
XP_038903667.1	5.63e-190	97.36	chlorophyll a-b binding protein of LHCII type 1-like [Benincasa hispida]	[more]
XP_008447450.1	3.80e-188	96.60	PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo] >...	[more]
XP_022159070.1	2.20e-187	95.85	chlorophyll a-b binding protein of LHCII type 1 [Momordica charantia]	[more]

BLAST of Cp4.1LG02g15910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GAK0	7.27e-195	100.00	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1KEF6	4.20e-194	99.25	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A5D3DAB9	1.84e-188	96.60	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BHH5	1.84e-188	96.60	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1DXL6	1.07e-187	95.85	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]

BLAST of Cp4.1LG02g15910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34430.1	4.7e-130	85.39	light-harvesting chlorophyll-protein complex II subunit B1	[more]
AT2G34420.1	4.4e-128	85.39	photosystem II light harvesting complex gene B1B2	[more]
AT1G29930.1	1.3e-127	84.64	chlorophyll A/B binding protein 1	[more]
AT1G29910.1	1.7e-127	84.64	chlorophyll A/B binding protein 3	[more]
AT1G29920.1	1.7e-127	84.64	chlorophyll A/B-binding protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 65..231 e-value: 5.7E-49 score: 166.7
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 56..258 e-value: 1.8E-90 score: 304.2
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 2..265
None	No IPR available	PANTHER	PTHR21649:SF97	CHLOROPHYLL A-B BINDING PROTEIN 2, CHLOROPLASTIC	coord: 2..265
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 48..262

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g15910.1	Cp4.1LG02g15910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding