Cp4.1LG02g15560 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGATGAAGAAGATCACCTGCGCCATTCTCTTCGCTGCCGCAACCGTCAGCGCCGTCGTTGCTCATGATGAGGCAGCGGCTCCAGCACCTGGACCAACCAGCGGCGCCACCGCCGGCCTTCCGGCAATCGGCTCTCTCATCGGCGCTTCGTTGCTCTCCGTCGCGGCCTACTACTTGCAATGA ATGGAGATGAAGAAGATCACCTGCGCCATTCTCTTCGCTGCCGCAACCGTCAGCGCCGTCGTTGCTCATGATGAGGCAGCGGCTCCAGCACCTGGACCAACCAGCGGCGCCACCGCCGGCCTTCCGGCAATCGGCTCTCTCATCGGCGCTTCGTTGCTCTCCGTCGCGGCCTACTACTTGCAATGA ATGGAGATGAAGAAGATCACCTGCGCCATTCTCTTCGCTGCCGCAACCGTCAGCGCCGTCGTTGCTCATGATGAGGCAGCGGCTCCAGCACCTGGACCAACCAGCGGCGCCACCGCCGGCCTTCCGGCAATCGGCTCTCTCATCGGCGCTTCGTTGCTCTCCGTCGCGGCCTACTACTTGCAATGA MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYLQ Homology
BLAST of Cp4.1LG02g15560 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2) HSP 1 Score: 74.3 bits (181), Expect = 5.2e-13 Identity = 39/60 (65.00%), Postives = 51/60 (85.00%), Query Frame = 0
BLAST of Cp4.1LG02g15560 vs. NCBI nr
Match: KAG7019275.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 110 bits (274), Expect = 4.63e-30 Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0
BLAST of Cp4.1LG02g15560 vs. NCBI nr
Match: XP_022998512.1 (arabinogalactan peptide 23-like [Cucurbita maxima]) HSP 1 Score: 106 bits (265), Expect = 1.10e-28 Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 0
BLAST of Cp4.1LG02g15560 vs. NCBI nr
Match: KAG7036581.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 104 bits (259), Expect = 9.02e-28 Identity = 58/61 (95.08%), Postives = 58/61 (95.08%), Query Frame = 0
BLAST of Cp4.1LG02g15560 vs. NCBI nr
Match: XP_022983304.1 (arabinogalactan peptide 23-like [Cucurbita maxima]) HSP 1 Score: 100 bits (249), Expect = 3.03e-26 Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 0
BLAST of Cp4.1LG02g15560 vs. NCBI nr
Match: XP_038905644.1 (arabinogalactan protein 23-like [Benincasa hispida]) HSP 1 Score: 97.8 bits (242), Expect = 3.55e-25 Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 0
BLAST of Cp4.1LG02g15560 vs. ExPASy TrEMBL
Match: A0A6J1K873 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111493125 PE=4 SV=1) HSP 1 Score: 106 bits (265), Expect = 5.30e-29 Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 0
BLAST of Cp4.1LG02g15560 vs. ExPASy TrEMBL
Match: A0A6J1J6Y9 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111481924 PE=4 SV=1) HSP 1 Score: 100 bits (249), Expect = 1.47e-26 Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 0
BLAST of Cp4.1LG02g15560 vs. ExPASy TrEMBL
Match: A0A6J1HQG2 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111465151 PE=4 SV=1) HSP 1 Score: 97.1 bits (240), Expect = 3.47e-25 Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 0
BLAST of Cp4.1LG02g15560 vs. ExPASy TrEMBL
Match: A0A6J1F209 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111438746 PE=4 SV=1) HSP 1 Score: 97.1 bits (240), Expect = 3.47e-25 Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 0
BLAST of Cp4.1LG02g15560 vs. ExPASy TrEMBL
Match: A0A5A7U280 (Arabinogalactan peptide 23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold612G00270 PE=4 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 1.89e-22 Identity = 50/60 (83.33%), Postives = 53/60 (88.33%), Query Frame = 0
BLAST of Cp4.1LG02g15560 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 ) HSP 1 Score: 74.3 bits (181), Expect = 3.7e-14 Identity = 39/60 (65.00%), Postives = 51/60 (85.00%), Query Frame = 0
BLAST of Cp4.1LG02g15560 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 63.5 bits (153), Expect = 6.6e-11 Identity = 38/61 (62.30%), Postives = 50/61 (81.97%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|