Cp4.1LG02g15450 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g15450
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	AAI domain-containing protein
Location	Cp4.1LG02: 13377745 .. 13378925 (-)
RNA-Seq Expression	Cp4.1LG02g15450
Synteny	Cp4.1LG02g15450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGACAACAAGCTTGAGTGAACAAAGCAAAGGCGAAACATGTAGTTTCACCTTCTTTTCTTCCCTCGTTAGGCTGATTCCGTGCAGGCCATCGGTTGCTCCATTCCGCCCTACTCCGCCGACCGCAGCCTGCTGCAATGCCGTCAGATCTCTCGGCCAGCCTTGCCTGTGCGTGCTTGTTAATGGCCCTCCAGTTGCCGGCGTTGACCGCGACTTGGTCATGCTCTTGCCCGAGAAATGCCCTACCAATTTTGACCCATGTACGTAGCCCCTTCTTTTTCGTTTATAATTATTTACGGAATCAAATAAATTATAAAAAAATAATAAATAGATACAAGATATTTCTCTATAATACAGAAGATAAATATTGAATTCGGGAGAGAATTTTGAATCTTTGAATTTTGTCTATTTTTATATAATTTAATAGTTTAGGCATTTTTTTACGTAAAATAAAAAACGTCGTATACAATTTCCCTCATTTTTCACATTTTTGCTGTTGTCTTTACAGGTGAAATTATGAAATGAAATGAAGACGGTCTGAGATATTCAAATATAAATTTTCAGTTCAATAATGAGATGTATATGCAAGAAGGTCGATTAAGCTTAGATGTTATCCCTTTCTATCATATAGACTTCAAATATATTTAAACAAAGAAAAAGAACGAGGAATATCGTGGTAATAGAAAGAGAAAAAGATTGTTGACGTCAACCAATTTACTACGATTTTTTCATCAATCATGAATTGGCCTAATATTAATTTTACGTATAATTACCAATAGCCGAACCGTAACGACTTATTCTAAAATTTAATTTTCAACGTGTATTAAGCTAGTCAAACGTAAACGCTCAAATATAAAAAAATATATATATGTATTATTTTATATGTACATATAACAACCATGCCAAATATTATTATTATTGTTTTTTTTTTTTAGTTTTACAATTATTATATAAGATCGATAAATTTTATTATTCTTTAATATATCTCGTGTATTTCACCTTTTATATATAATATTAATTGGAATAGGCTAAGTCAAATTTTACAATTTTATTATGATTATCAACTTGACATTTTTTATATGATAATACATAGAAAATTTACATGTTTTGTACTTACTAATGTTAGACCATGACTTCGATTATTTTTATGTTAAATTTATATAGAATATTTTACTTAGTCAA

mRNA sequence

GTGACAACAAGCTTGAGTGAACAAAGCAAAGGCGAAACATGTAGTTTCACCTTCTTTTCTTCCCTCGTTAGGCTGATTCCGTGCAGGCCATCGGTTGCTCCATTCCGCCCTACTCCGCCGACCGCAGCCTGCTGCAATGCCGTCAGATCTCTCGGCCAGCCTTGCCTGTGCGTGCTTGTTAATGGCCCTCCAGTTGCCGGCGTTGACCGCGACTTGGTGAAATTATGAAATGAAATGAAGACGGTCTGAGATATTCAAATATAAATTTTCAGTTCAATAATGAGATGTATATGCAAGAAGGTCGATTAAGCTTAGATGTTATCCCTTTCTATCATATAGACTTCAAATATATTTAAACAAAGAAAAAGAACGAGGAATATCGTGGTAATAGAAAGAGAAAAAGATTGTTGACGTCAACCAATTTACTACGATTTTTTCATCAATCATGAATTGGCCTAATATTAATTTTACGTATAATTACCAATAGCCGAACCGTAACGACTTATTCTAAAATTTAATTTTCAACGTGTATTAAGCTAGTCAAACGTAAACGCTCAAATATAAAAAAATATATATATGTATTATTTTATATGTACATATAACAACCATGCCAAATATTATTATTATTGTTTTTTTTTTTTAGTTTTACAATTATTATATAAGATCGATAAATTTTATTATTCTTTAATATATCTCGTGTATTTCACCTTTTATATATAATATTAATTGGAATAGGCTAAGTCAAATTTTACAATTTTATTATGATTATCAACTTGACATTTTTTATATGATAATACATAGAAAATTTACATGTTTTGTACTTACTAATGTTAGACCATGACTTCGATTATTTTTATGTTAAATTTATATAGAATATTTTACTTAGTCAA

Coding sequence (CDS)

GTGACAACAAGCTTGAGTGAACAAAGCAAAGGCGAAACATGTAGTTTCACCTTCTTTTCTTCCCTCGTTAGGCTGATTCCGTGCAGGCCATCGGTTGCTCCATTCCGCCCTACTCCGCCGACCGCAGCCTGCTGCAATGCCGTCAGATCTCTCGGCCAGCCTTGCCTGTGCGTGCTTGTTAATGGCCCTCCAGTTGCCGGCGTTGACCGCGACTTGGTGAAATTATGA

Protein sequence

VTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAACCNAVRSLGQPCLCVLVNGPPVAGVDRDLVKL

Homology

[Close]

BLAST of Cp4.1LG02g15450 vs. NCBI nr
Match: XP_022949330.1 (protein LIM1-like [Cucurbita moschata])

HSP 1 Score: 153 bits (386), Expect = 2.57e-46
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1  VTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAACCNAVRSLGQPCLCVLV 60
          VTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAACCNAVRSLGQPCLCVLV
Sbjct: 17 VTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAACCNAVRSLGQPCLCVLV 76

Query: 61 NGPPVAGVDRDLVKL 75
          NGPPVAGVDRDLV L
Sbjct: 77 NGPPVAGVDRDLVML 91

[Close]

BLAST of Cp4.1LG02g15450 vs. NCBI nr
Match: XP_023524609.1 (protein LIM1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 153 bits (386), Expect = 2.57e-46
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1  VTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAACCNAVRSLGQPCLCVLV 60
          VTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAACCNAVRSLGQPCLCVLV
Sbjct: 17 VTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAACCNAVRSLGQPCLCVLV 76

Query: 61 NGPPVAGVDRDLVKL 75
          NGPPVAGVDRDLV L
Sbjct: 77 NGPPVAGVDRDLVML 91

[Close]

BLAST of Cp4.1LG02g15450 vs. NCBI nr
Match: KAG7036573.1 (hypothetical protein SDJN02_00192, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151 bits (381), Expect = 1.49e-45
Identity = 73/75 (97.33%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 1  VTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAACCNAVRSLGQPCLCVLV 60
          VTTSL EQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAACCNAVRSLGQPCLCVLV
Sbjct: 17 VTTSLCEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAACCNAVRSLGQPCLCVLV 76

Query: 61 NGPPVAGVDRDLVKL 75
          NGPPVAGVDRDLV L
Sbjct: 77 NGPPVAGVDRDLVML 91

[Close]

BLAST of Cp4.1LG02g15450 vs. NCBI nr
Match: XP_022998504.1 (protein LIM3-like [Cucurbita maxima])

HSP 1 Score: 150 bits (380), Expect = 2.12e-45
Identity = 73/75 (97.33%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 1  VTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAACCNAVRSLGQPCLCVLV 60
          VTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRP PPTAACCNAVRSLGQPCLCVLV
Sbjct: 17 VTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTAACCNAVRSLGQPCLCVLV 76

Query: 61 NGPPVAGVDRDLVKL 75
          NGPPVAGVDRDLV L
Sbjct: 77 NGPPVAGVDRDLVML 91

[Close]

BLAST of Cp4.1LG02g15450 vs. NCBI nr
Match: XP_038903285.1 (protein LIM3 [Benincasa hispida])

HSP 1 Score: 141 bits (355), Expect = 1.37e-41
Identity = 65/74 (87.84%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 2  TTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAACCNAVRSLGQPCLCVLVN 61
          TTSL+EQSKGETCSFTFFSSLVRL+PCRPSVAPFRP PPT ACCNAV++LGQPCLCVLVN
Sbjct: 18 TTSLAEQSKGETCSFTFFSSLVRLMPCRPSVAPFRPIPPTVACCNAVKTLGQPCLCVLVN 77

Query: 62 GPPVAGVDRDLVKL 75
          GPP+AGVDRDL  L
Sbjct: 78 GPPIAGVDRDLAML 91

[Close]

BLAST of Cp4.1LG02g15450 vs. ExPASy TrEMBL
Match: A0A6J1GCG0 (protein LIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111452716 PE=4 SV=1)

HSP 1 Score: 153 bits (386), Expect = 1.25e-46
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1  VTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAACCNAVRSLGQPCLCVLV 60
          VTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAACCNAVRSLGQPCLCVLV
Sbjct: 17 VTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAACCNAVRSLGQPCLCVLV 76

Query: 61 NGPPVAGVDRDLVKL 75
          NGPPVAGVDRDLV L
Sbjct: 77 NGPPVAGVDRDLVML 91

[Close]

BLAST of Cp4.1LG02g15450 vs. ExPASy TrEMBL
Match: A0A6J1KEI1 (protein LIM3-like OS=Cucurbita maxima OX=3661 GN=LOC111493120 PE=4 SV=1)

HSP 1 Score: 150 bits (380), Expect = 1.03e-45
Identity = 73/75 (97.33%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 1  VTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAACCNAVRSLGQPCLCVLV 60
          VTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRP PPTAACCNAVRSLGQPCLCVLV
Sbjct: 17 VTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTAACCNAVRSLGQPCLCVLV 76

Query: 61 NGPPVAGVDRDLVKL 75
          NGPPVAGVDRDLV L
Sbjct: 77 NGPPVAGVDRDLVML 91

[Close]

BLAST of Cp4.1LG02g15450 vs. ExPASy TrEMBL
Match: A0A6J1DFH7 (protein LIM3 OS=Momordica charantia OX=3673 GN=LOC111020340 PE=4 SV=1)

HSP 1 Score: 132 bits (333), Expect = 1.50e-38
Identity = 62/75 (82.67%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 1  VTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAACCNAVRSLGQPCLCVLV 60
          V TSL EQSKGETC FTFFSSLVRL+PCRPSVAPFR  PPT ACC AV++LGQPCLCVLV
Sbjct: 17 VMTSLGEQSKGETCRFTFFSSLVRLLPCRPSVAPFRAIPPTEACCKAVKTLGQPCLCVLV 76

Query: 61 NGPPVAGVDRDLVKL 75
          NGPP+AGVDRDL  L
Sbjct: 77 NGPPIAGVDRDLAML 91

[Close]

BLAST of Cp4.1LG02g15450 vs. ExPASy TrEMBL
Match: A0A1S3CFZ5 (protein LIM3 OS=Cucumis melo OX=3656 GN=LOC103500304 PE=4 SV=1)

HSP 1 Score: 132 bits (332), Expect = 3.36e-38
Identity = 60/74 (81.08%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 2   TTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAACCNAVRSLGQPCLCVLVN 61
           TTSL E+ KGETCSFTFFSSL RL+PCRPSVAPFRP PPT ACCNAV++LGQPCLCVLVN
Sbjct: 34  TTSLVEKGKGETCSFTFFSSLARLMPCRPSVAPFRPIPPTVACCNAVKTLGQPCLCVLVN 93

Query: 62  GPPVAGVDRDLVKL 75
           GPP+ GVDR+L  L
Sbjct: 94  GPPITGVDRELAML 107

[Close]

BLAST of Cp4.1LG02g15450 vs. ExPASy TrEMBL
Match: A0A2C9V8E8 (AAI domain-containing protein (Fragment) OS=Manihot esculenta OX=3983 GN=MANES_10G147700 PE=4 SV=1)

HSP 1 Score: 112 bits (281), Expect = 1.16e-30
Identity = 50/72 (69.44%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 1  VTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAACCNAVRSLGQPCLCVLV 60
          V T L EQ KG  C+ TFFS+LV++IPCR +VAPF P PP+ ACCNAV+SLGQPCLCVLV
Sbjct: 19 VMTGLVEQGKGHVCANTFFSALVQMIPCRAAVAPFSPIPPSEACCNAVKSLGQPCLCVLV 78

Query: 61 NGPPVAGVDRDL 72
          NGPP++GVDR++
Sbjct: 79 NGPPISGVDRNM 90

[Close]

BLAST of Cp4.1LG02g15450 vs. TAIR 10
Match: AT3G07450.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 94.0 bits (232), Expect = 5.6e-20
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 1  VTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAACCNAVRSLGQPCLCVLV 60
          V + L  ++ G  C  TF S+L++L+PCRPSVAPF   PP   CC A+++LGQPCLCVL 
Sbjct: 19 VQSGLVRETLGHPCGRTFLSALIQLVPCRPSVAPFSTLPPNGLCCAAIKTLGQPCLCVLA 78

Query: 61 NGPPVAGVDRDL 73
           GPP+ GVDR L
Sbjct: 79 KGPPIVGVDRTL 90

[Close]

BLAST of Cp4.1LG02g15450 vs. TAIR 10
Match: AT3G52130.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-19
Identity = 39/59 (66.10%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 14  CSFTFFSSLVRLIPCRPSVAPFRPTPPTAACCNAVRSLGQPCLCVLVNGPPVAGVDRDL 73
           CS TFFS+LV+LIPCR +VAPF P PPT  CC+AV +LG+PCLC+L NGPP++G+DR +
Sbjct: 48  CSRTFFSALVQLIPCRAAVAPFSPIPPTEICCSAVVTLGRPCLCLLANGPPLSGIDRSM 106

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g15450 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g15450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949330.1	2.57e-46	98.67	protein LIM1-like [Cucurbita moschata]	[more]
XP_023524609.1	2.57e-46	98.67	protein LIM1-like [Cucurbita pepo subsp. pepo]	[more]
KAG7036573.1	1.49e-45	97.33	hypothetical protein SDJN02_00192, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022998504.1	2.12e-45	97.33	protein LIM3-like [Cucurbita maxima]	[more]
XP_038903285.1	1.37e-41	87.84	protein LIM3 [Benincasa hispida]	[more]

BLAST of Cp4.1LG02g15450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GCG0	1.25e-46	98.67	protein LIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111452716 PE=4 SV=1	[more]
A0A6J1KEI1	1.03e-45	97.33	protein LIM3-like OS=Cucurbita maxima OX=3661 GN=LOC111493120 PE=4 SV=1	[more]
A0A6J1DFH7	1.50e-38	82.67	protein LIM3 OS=Momordica charantia OX=3673 GN=LOC111020340 PE=4 SV=1	[more]
A0A1S3CFZ5	3.36e-38	81.08	protein LIM3 OS=Cucumis melo OX=3656 GN=LOC103500304 PE=4 SV=1	[more]
A0A2C9V8E8	1.16e-30	69.44	AAI domain-containing protein (Fragment) OS=Manihot esculenta OX=3983 GN=MANES_1...	[more]

BLAST of Cp4.1LG02g15450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07450.1	5.6e-20	55.56	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT3G52130.1	1.2e-19	66.10	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 13..74 e-value: 4.3E-9 score: 38.1
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 21..66
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 19..67 e-value: 1.4E-5 score: 25.2
IPR039265	Putative lipid-transfer protein DIR1-like	PANTHER	PTHR33122	LIPID BINDING PROTEIN-RELATED	coord: 2..73
None	No IPR available	PANTHER	PTHR33122:SF33	BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN	coord: 2..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g15450.1	Cp4.1LG02g15450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009627	systemic acquired resistance
molecular_function	GO:0005504	fatty acid binding