Cp4.1LG02g15310 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g15310
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Germin-like protein
Location	Cp4.1LG02: 13447851 .. 13451085 (-)
RNA-Seq Expression	Cp4.1LG02g15310
Synteny	Cp4.1LG02g15310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAGCGAGGAAGAAGAATACGACCCATCTGGACCCGAGTGGTCTCGAAATATCCGCCATTGGAGATGGATAGGTAGATTCCTCATGACAATTTATCTTCTTTTTCGTTCACTCTTTTTTTCTTTTTCTTTTTTTTTCCGGAAATTTGTTTGACGTTTCATGATTCATCGTAAATAATTGCAATGATTATATATATAATATTAAAATACTTCTCCACAGTATTTTTACTTTCAAATATCTAATATTAATCCGAAAATTCGACCCCACTTATTTTAATGAATGTTTAACCTAAAGTATTCTCGGAGAATATGCCTCCTAACTTAGTGCTACGTGACGAATTTCATTCAAAGGAATCCAGTAAAGAAAAGCATGTAATTTTAGTAATTAAAAGGTTTATTGAGATGAATTAAATAATATTAATAATTTTCATACAAATATTTATTTTTTGACAAAGCTAATAATAAAATTAAAATACAAGAACTAACATGTTATTTTAATATTTAATTTTAGTCTATGTAGGTTGATAAATCAAGAAATTAATTCTTTAAGGTAAATTTTAAGATTAATTTTTTATTTTTTTTAAAAAGATTGGAAATATAATCAAATAAATTTATTAAAAGTACAATATGTTGATTATAGGAGGAAAATCGTATTTTATAATTATTATTTTATTTTATTTTATTCTGTTGGTTTTTAAATTTGAGTGAGAAATCCAGTTGGAATTGGGACCAGTTGATCGCTAGAACCTTCCAATTATAGCGACGCGTTTGGTTCATAAAATTCGAATTTCTCATCTTTTTCTCCAATTATCTTTTTTCTTTTTCAGGATTTATTATCTTTTTCCCGTTCTCTCTCTCTCTCTCTCTCTGAAAAAGACAGATTAGCGTGGGCTTCACCCAATTTTTATGAGTGGGCCTTTTGTTTCTTACAGTATTAACATGGGCTCGGCCCACAATTTCACTAACCAATACATTAATTTTTACGATTGGACCTTTTGTTTGTTACTGAATTAACTTGGGCTCGGCCCAACTTTTTATTAATCAATTCATTAATTTTTACGATTGGGCCTTTTGTTTGTTACTGAATTAACTTGGGCTCGGCCCATATTTTCATTAACCAATTCATTAATTTTTACGATTGGGCCTTTCGTTTGTTACTGTATTAACTTGGGCTCGGCCCACAATTTCATTAACCGATTCATTAATTTTTACAATTGGGCCGTTTGTTTGTTACTGTATTAACTTGGGCTCGGCCCACATATTAATTAACCAATTCATTAATTTTTACGATTGGGCCTTTTGTTTCTTACTGTATTCACTTGGGCTCGGCCCACATTTTAATTAACCAATTCATTAATTTTTACGATTGGGCCTTTTGTCTCTTACTGTATTCACTTGGGCTCGGCCCACATTTTAATTAACCAATTCATTAATTTTTACGATTGGGCCTTTTGTCTCTTACTGTATTCACTTGGGCTCGGCCCACATTTTAATTAACCAATTCATTAATTTTTACGATTGGGCCTTTTGTCTCTTACTGTATTCACTTGGGCTCGGCCCACATTTTAATTAACCAATTCATTAATTTTTACGATTGGGCCTTTTGTCTCTTACTGTATTCACTTGGGCTCGGCCCACATTTTAATTAACCAATTCATTAATTTTTACGATTGGGCCTTTTGTCTCTTACTGTATTCACTTGGGCTCGGCCCACATTTTAATTAACCAATTCATTAATTTTTACGATTGGGCCTTTTGTCTCTTACTGTATTCACTTGGGCTCGGCCCACATTTTAATTAACCAATTCATTAATTTTTACGATTGGGCCTTTTGTCTCTTACTGTATTCACTTGGGCTCGGCCCACATTTTAATTAACCAATTCATTAATTTTTACGATTGGGCCTTTTGTTTGTTACTGTATTAACATGGGCTCGGCCCACATTTTCATTAACCAATTATTTACTTTACGATTGGGCCTTTTGTTTGTTACTGTATTAACATGGGCTTGGCCCACATATTTATTAATGAATTTATTAATTTTTATGATTGGGCCTTTTGTTTGTTACTTTATTAACTTGGGCTTGGCCCACATTTTCATTAACTTTTGTGATTGGGCCTTGTGTTTGTTACTGTATTTACTTGGGCTTGGCCCACATATTTATTAATCAATTCATTAATTTGTGATTGGGCTTTTTGTTTGTTACTGTATTACCTTGGGCTTGGCCCACAATCAACTACTTTTTGAAATTATAATTAATCAGAATTAATAAATTATTAATTTAGAAGGAAAAATATTTATTCATATTACCCATCACTAAATTTCATATTAATTTTGCTTTAAGCAATGCAGAAATCCAGTAGTAAACTCCAAGAATTAGGAAATTAATATCTTCCACTGTTGGCAACCTCAAAAACCTTACAATTCAAGCATATTTATATGTTTCATCCTAAATTCTCAGCTCGAACACATGAACTCAAAATGAACAAACCATCATCTTCCTTAATTTTCCTTCTGGTTGTGTTATTTTCTTGTCTTGGAATCTCAGTTGCTGATTCTCATAATGTCTTTGATTCTTGTCCAACAGCCACTGATAGAATTGACTTCATCAATGGCTTCCCTTGCAAGAACCCCACCATTGTTAGGACGGATGACTTCACCTCAGCAAAGTTAACGGGACCGGTCAATACCGATGATCGGTTCAGCTCGTTGGTGAAGGTCGTCACGGCTGCAGACTTCCCTGGCTTGAATTCACTCGGGCTATCTATCTCTAGAACTGATTTGGGCACGGATGCCATCATTTCTCCTCACTCGCATCCAAGAGCCACAGAGATGTTCTTTGTGAATCAAGGTACGTATTGGGTTGAGCGGTGATTTAACATGGTATTAGAGTAAGGAGTTGTGTGTTTGTCTTCCTTGCAGGCATCGTTCTAGCTGGATTCATTGACACCAAAAACCGACTCTTTCAGGAGTTTTTAAAACCAGGCGACGTAATCGTATTTCCAAAGGGGTTGTTGCACTTCTGTCTAAATTCTGGTTACGAGACCGCCACCATTTTCTCTGTGTATAACAGTCAGAACCCAGGAGTTGTGAATGTCAATGGTGCCATGTTCGAGCCTGCTGATTCAAGTCATTTCATAGACAAGTTCCTCGACAAATTAAAAGCTCTTTCTTCACTACCAAATCTCAAATTCAACCCAAATGTAACCCTACCCAGATACATAAGCTTGTAA

mRNA sequence

ATGGGCAGCGAGGAAGAAGAATACGACCCATCTGGACCCGAGTGGTCTCGAAATATCCGCCATTGGAGATGGATAGTTGCTGATTCTCATAATGTCTTTGATTCTTGTCCAACAGCCACTGATAGAATTGACTTCATCAATGGCTTCCCTTGCAAGAACCCCACCATTGTTAGGACGGATGACTTCACCTCAGCAAAGTTAACGGGACCGGTCAATACCGATGATCGGTTCAGCTCGTTGGTGAAGGAGTTTTTAAAACCAGGCGACGTAATCGTATTTCCAAAGGGGTTGTTGCACTTCTGTCTAAATTCTGGTTACGAGACCGCCACCATTTTCTCTGTGTATAACAGTCAGAACCCAGGAGTTGTGAATGTCAATGGTGCCATGTTCGAGCCTGCTGATTCAAGTCATTTCATAGACAAGTTCCTCGACAAATTAAAAGCTCTTTCTTCACTACCAAATCTCAAATTCAACCCAAATGTAACCCTACCCAGATACATAAGCTTGTAA

Coding sequence (CDS)

ATGGGCAGCGAGGAAGAAGAATACGACCCATCTGGACCCGAGTGGTCTCGAAATATCCGCCATTGGAGATGGATAGTTGCTGATTCTCATAATGTCTTTGATTCTTGTCCAACAGCCACTGATAGAATTGACTTCATCAATGGCTTCCCTTGCAAGAACCCCACCATTGTTAGGACGGATGACTTCACCTCAGCAAAGTTAACGGGACCGGTCAATACCGATGATCGGTTCAGCTCGTTGGTGAAGGAGTTTTTAAAACCAGGCGACGTAATCGTATTTCCAAAGGGGTTGTTGCACTTCTGTCTAAATTCTGGTTACGAGACCGCCACCATTTTCTCTGTGTATAACAGTCAGAACCCAGGAGTTGTGAATGTCAATGGTGCCATGTTCGAGCCTGCTGATTCAAGTCATTTCATAGACAAGTTCCTCGACAAATTAAAAGCTCTTTCTTCACTACCAAATCTCAAATTCAACCCAAATGTAACCCTACCCAGATACATAAGCTTGTAA

Protein sequence

MGSEEEEYDPSGPEWSRNIRHWRWIVADSHNVFDSCPTATDRIDFINGFPCKNPTIVRTDDFTSAKLTGPVNTDDRFSSLVKEFLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMFEPADSSHFIDKFLDKLKALSSLPNLKFNPNVTLPRYISL

Homology

[Close]

BLAST of Cp4.1LG02g15310 vs. ExPASy Swiss-Prot
Match: Q9FLT3 (Germin-like protein subfamily 3 member 4 OS=Arabidopsis thaliana OX=3702 GN=At5g61750 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.6e-19
Identity = 59/163 (36.20%), Postives = 72/163 (44.17%), Query Frame = 0


Query: 25  IVADSHNVFDSCPTA--TDRIDFINGFPCKNPTIVRTDDFTSAKLTGPVNTD-------- 84
           +  DS N+ D+CPTA     I FING+PCKNPT +   DF S KLT   +TD        
Sbjct: 16  VSGDSDNMQDTCPTAPGEQSIFFINGYPCKNPTKITAQDFKSTKLTEAGDTDNYLQSNVT 75

Query: 85  ----------------------------------------------------DRFSSLVK 126
                                                               D  + + +
Sbjct: 76  LLTALEFPGLNTLGLSVSRTDLERDGSVPFHSHPRSSEMLFVVKGVVFAGFVDTNNKIFQ 135

[Close]

BLAST of Cp4.1LG02g15310 vs. ExPASy Swiss-Prot
Match: Q2R352 (Germin-like protein 11-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0537350 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.2e-12
Identity = 50/170 (29.41%), Postives = 68/170 (40.00%), Query Frame = 0


Query: 25  IVADSHNVFDSCPTAT--DRIDFINGFPCKNPTIVRTDDFTSAKLTGPVNTD-------- 84
           I++DS  + D CP A   +R  F+NGF CK+P+ +   DF +  L    + D        
Sbjct: 21  IISDSPPLQDVCPMAPQGERKLFMNGFFCKSPSTIMASDFKTLLLNHAGDLDNMVRSSAN 80

Query: 85  ----------------------------------------------------DRFSSLVK 133
                                                               D    L +
Sbjct: 81  IITATEFPGLNTLGISMARTDIAVSGAVLPHSHPRASEMMFVHSGSVVAGFFDTKGKLFQ 140

[Close]

BLAST of Cp4.1LG02g15310 vs. ExPASy Swiss-Prot
Match: Q7XSN6 (Germin-like protein 4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0617900 PE=2 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-07
Identity = 44/174 (25.29%), Postives = 62/174 (35.63%), Query Frame = 0


Query: 23  RWIVADSHNVFDSCPTATDRIDFINGFPCKNPTIVRTDDFTSAKLTG------------- 82
           R + +D   + D C        F+NGF CKNP  V  +DF   K  G             
Sbjct: 24  RALASDPSQLQDFCVADKLSAVFVNGFVCKNPKQVTANDFFLPKALGVPGNTVNAQGSAV 83

Query: 83  -----------------------------PVNTDDRFSSLV------------------- 131
                                        P +T  R + ++                   
Sbjct: 84  TPVTVNELPGLNTLGISFARIDFAPNGQNPPHTHPRATEILTVLQGTLLVGFVTSNQPGG 143

[Close]

BLAST of Cp4.1LG02g15310 vs. ExPASy Swiss-Prot
Match: Q6K5P9 (Putative germin-like protein 2-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0491700 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-07
Identity = 31/90 (34.44%), Postives = 47/90 (52.22%), Query Frame = 0


Query: 54  PTIVRTDDFTSAKLTGPVNTDDRFSSLVKEFLKPGDVIVFPKGLLHFCLNSGYETATIFS 113
           PT++    +    ++ P N       L  + L  GDV VFP+GL+HF  N+G   A   +
Sbjct: 124 PTVLEGSLYVGFVISNPEN------KLFTKVLNKGDVFVFPQGLVHFQFNNGTNNAVALA 183

Query: 114 VYNSQNPGVVNVNGAMF--EPADSSHFIDK 142
             +SQNPGV+ V  A+F  +P+ S   + K
Sbjct: 184 ALSSQNPGVITVGNAVFGSKPSISDDILAK 207

[Close]

BLAST of Cp4.1LG02g15310 vs. ExPASy Swiss-Prot
Match: Q9FMA8 (Germin-like protein subfamily 1 member 11 OS=Arabidopsis thaliana OX=3702 GN=At5g38940 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.3e-07
Identity = 43/170 (25.29%), Postives = 62/170 (36.47%), Query Frame = 0


Query: 25  IVADSHNVFDSCPTATDRID--FINGFPCKNPTIVRTDDF------TSAKLTGPVN---- 84
           I +D   + D C +A    +  F+NG  CK+P +V  DDF      T+  +T PV     
Sbjct: 23  IASDPSQLQDFCVSANTSANGVFVNGKFCKDPKLVTADDFFFSGLQTARPITSPVGSTVT 82

Query: 85  ----------------------------------------------------TDDRFSSL 131
                                                               T +  + L
Sbjct: 83  AVNVNNLLGLNTLGISLVRIDYAVNGQNPPHTHPRATEILVVEQGTLLVGFVTSNPDNRL 142

[Close]

BLAST of Cp4.1LG02g15310 vs. NCBI nr
Match: XP_023522282.1 (germin-like protein subfamily 3 member 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 271 bits (693), Expect = 1.61e-89
Identity = 144/204 (70.59%), Postives = 144/204 (70.59%), Query Frame = 0


Query: 26  VADSHNVFDSCPTATDRIDFINGFPCKNPTIVRTDDFTSAKLTGPVNTDDRFSSLVK--- 85
           VADSHNVFDSCPTATDRIDFINGFPCKNPTIVRTDDFTSAKLTGPVNTDDRFSSLVK   
Sbjct: 37  VADSHNVFDSCPTATDRIDFINGFPCKNPTIVRTDDFTSAKLTGPVNTDDRFSSLVKVVT 96

Query: 86  ---------------------------------------------------------EFL 145
                                                                    EFL
Sbjct: 97  AADFPGLNSLGLSISRTDLGTDAIISPHSHPRATEMFFVNQGIVLAGFIDTKNRLFQEFL 156

Query: 146 KPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMFEPADSSHFIDKFLDK 169
           KPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMFEPADSSHFIDKFLDK
Sbjct: 157 KPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMFEPADSSHFIDKFLDK 216

[Close]

BLAST of Cp4.1LG02g15310 vs. NCBI nr
Match: XP_022948659.1 (germin-like protein subfamily 3 member 4 [Cucurbita moschata] >XP_022948660.1 germin-like protein subfamily 3 member 4 [Cucurbita moschata])

HSP 1 Score: 270 bits (689), Expect = 4.10e-89
Identity = 143/204 (70.10%), Postives = 144/204 (70.59%), Query Frame = 0


Query: 26  VADSHNVFDSCPTATDRIDFINGFPCKNPTIVRTDDFTSAKLTGPVNTDDRFSSLVK--- 85
           VADSHNVFDSCPTATDRIDFINGFPCKNPTIVRTDDFTSAKLTGPVNTDDRFSSLVK   
Sbjct: 23  VADSHNVFDSCPTATDRIDFINGFPCKNPTIVRTDDFTSAKLTGPVNTDDRFSSLVKVVT 82

Query: 86  ---------------------------------------------------------EFL 145
                                                                    EFL
Sbjct: 83  AADFPGLNSLGLSISRTDLGTDAIVSPHSHPRATEMFFVNQGIVLAGFIDTKNRLFQEFL 142

Query: 146 KPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMFEPADSSHFIDKFLDK 169
           KPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMF+PADSSHFIDKFLDK
Sbjct: 143 KPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMFKPADSSHFIDKFLDK 202

[Close]

BLAST of Cp4.1LG02g15310 vs. NCBI nr
Match: KAG6606852.1 (Germin-like protein subfamily 3 member 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036559.1 Germin-like protein subfamily 3 member 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 269 bits (688), Expect = 5.82e-89
Identity = 143/204 (70.10%), Postives = 144/204 (70.59%), Query Frame = 0


Query: 26  VADSHNVFDSCPTATDRIDFINGFPCKNPTIVRTDDFTSAKLTGPVNTDDRFSSLVK--- 85
           VADSHNVFDSCPTATDRIDFINGFPCKNPTIVRTDDFTSAKLTGPVNTDDRFSSLVK   
Sbjct: 23  VADSHNVFDSCPTATDRIDFINGFPCKNPTIVRTDDFTSAKLTGPVNTDDRFSSLVKVVT 82

Query: 86  ---------------------------------------------------------EFL 145
                                                                    EFL
Sbjct: 83  AADFPGLNSLGLSISRTDLGTDAIVSPHSHPRATEMFFVNQGIVLAGFIDTKNRLFQEFL 142

Query: 146 KPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMFEPADSSHFIDKFLDK 169
           KPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMFEPADSSHFIDKFLDK
Sbjct: 143 KPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMFEPADSSHFIDKFLDK 202

[Close]

BLAST of Cp4.1LG02g15310 vs. NCBI nr
Match: XP_022998490.1 (germin-like protein subfamily 3 member 4 [Cucurbita maxima])

HSP 1 Score: 268 bits (685), Expect = 1.66e-88
Identity = 141/204 (69.12%), Postives = 143/204 (70.10%), Query Frame = 0


Query: 26  VADSHNVFDSCPTATDRIDFINGFPCKNPTIVRTDDFTSAKLTGPVNTDDRFSSLVK--- 85
           VADSHNVFDSCPTATDRIDF+NGFPCKNPT+VRTDDFTSAKLTGPVNTDDRFSSLVK   
Sbjct: 23  VADSHNVFDSCPTATDRIDFVNGFPCKNPTVVRTDDFTSAKLTGPVNTDDRFSSLVKVVT 82

Query: 86  ---------------------------------------------------------EFL 145
                                                                    EFL
Sbjct: 83  AADFPGLNSLGLSISRTDLGTDAIVSPHSHPRATEMFFVNQGIVLAGFIDTKNRLFQEFL 142

Query: 146 KPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMFEPADSSHFIDKFLDK 169
           KPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMFEPADSSHFID FLDK
Sbjct: 143 KPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMFEPADSSHFIDMFLDK 202

[Close]

BLAST of Cp4.1LG02g15310 vs. NCBI nr
Match: XP_038905670.1 (germin-like protein subfamily 3 member 4 [Benincasa hispida])

HSP 1 Score: 216 bits (550), Expect = 9.49e-68
Identity = 115/204 (56.37%), Postives = 128/204 (62.75%), Query Frame = 0


Query: 26  VADSHNVFDSCPTATDRIDFINGFPCKNPTIVRTDDFTSAKLTGPVNTDDRFSSLVK--- 85
           VADS+NVFD+CPTATDRI+FING+ CK+PT+V T DF SAKLTGP+N+DD+F+ LVK   
Sbjct: 40  VADSNNVFDTCPTATDRIEFINGYHCKSPTLVTTSDFNSAKLTGPINSDDQFNLLVKIVT 99

Query: 86  ---------------------------------------------------------EFL 145
                                                                      L
Sbjct: 100 AADFPGLNTLGLSISRTDLGTDAIISPHSHPRATEMFFLNQGIVLAGFIDTRNQLFQTIL 159

Query: 146 KPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMFEPADSSHFIDKFLDK 169
           K GDVIVFPKGLLHFCLNSGYE A  FSVYNSQNPGVVN+NGAMF+PADSSHFIDKFL +
Sbjct: 160 KAGDVIVFPKGLLHFCLNSGYEPAISFSVYNSQNPGVVNINGAMFDPADSSHFIDKFLKR 219

[Close]

BLAST of Cp4.1LG02g15310 vs. ExPASy TrEMBL
Match: A0A6J1GAI2 (Germin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111452269 PE=3 SV=1)

HSP 1 Score: 270 bits (689), Expect = 1.98e-89
Identity = 143/204 (70.10%), Postives = 144/204 (70.59%), Query Frame = 0


Query: 26  VADSHNVFDSCPTATDRIDFINGFPCKNPTIVRTDDFTSAKLTGPVNTDDRFSSLVK--- 85
           VADSHNVFDSCPTATDRIDFINGFPCKNPTIVRTDDFTSAKLTGPVNTDDRFSSLVK   
Sbjct: 23  VADSHNVFDSCPTATDRIDFINGFPCKNPTIVRTDDFTSAKLTGPVNTDDRFSSLVKVVT 82

Query: 86  ---------------------------------------------------------EFL 145
                                                                    EFL
Sbjct: 83  AADFPGLNSLGLSISRTDLGTDAIVSPHSHPRATEMFFVNQGIVLAGFIDTKNRLFQEFL 142

Query: 146 KPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMFEPADSSHFIDKFLDK 169
           KPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMF+PADSSHFIDKFLDK
Sbjct: 143 KPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMFKPADSSHFIDKFLDK 202

[Close]

BLAST of Cp4.1LG02g15310 vs. ExPASy TrEMBL
Match: A0A6J1KCN7 (Germin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111493105 PE=3 SV=1)

HSP 1 Score: 268 bits (685), Expect = 8.06e-89
Identity = 141/204 (69.12%), Postives = 143/204 (70.10%), Query Frame = 0


Query: 26  VADSHNVFDSCPTATDRIDFINGFPCKNPTIVRTDDFTSAKLTGPVNTDDRFSSLVK--- 85
           VADSHNVFDSCPTATDRIDF+NGFPCKNPT+VRTDDFTSAKLTGPVNTDDRFSSLVK   
Sbjct: 23  VADSHNVFDSCPTATDRIDFVNGFPCKNPTVVRTDDFTSAKLTGPVNTDDRFSSLVKVVT 82

Query: 86  ---------------------------------------------------------EFL 145
                                                                    EFL
Sbjct: 83  AADFPGLNSLGLSISRTDLGTDAIVSPHSHPRATEMFFVNQGIVLAGFIDTKNRLFQEFL 142

Query: 146 KPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMFEPADSSHFIDKFLDK 169
           KPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMFEPADSSHFID FLDK
Sbjct: 143 KPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMFEPADSSHFIDMFLDK 202

[Close]

BLAST of Cp4.1LG02g15310 vs. ExPASy TrEMBL
Match: A0A6J1DJ19 (Germin-like protein OS=Momordica charantia OX=3673 GN=LOC111020943 PE=3 SV=1)

HSP 1 Score: 211 bits (537), Expect = 2.68e-66
Identity = 112/204 (54.90%), Postives = 129/204 (63.24%), Query Frame = 0


Query: 26  VADSHNVFDSCPTATDRIDFINGFPCKNPTIVRTDDFTSAKLTGPVNTDDRFSS------ 85
           VADS+NVFD+CPTAT++ +FINGFPCKNPTIV T DF SAKLTGPV+TDD+F S      
Sbjct: 25  VADSNNVFDTCPTATNKSEFINGFPCKNPTIVTTSDFNSAKLTGPVDTDDQFISSVNILT 84

Query: 86  ------------------------------------------------------LVKEFL 145
                                                                 L + FL
Sbjct: 85  AAEFSGLNTLGLSISRTDLGTDAIVSPHSHPRATEIFFVNQGIVLAGFLDTKNRLFQSFL 144

Query: 146 KPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMFEPADSSHFIDKFLDK 169
           K GDV+VFPKGLLHFCLNSGYE A IFSV+NSQNPGVVN+NGAMFEPADS+H + KFL++
Sbjct: 145 KAGDVMVFPKGLLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMFEPADSNHLVHKFLER 204

[Close]

BLAST of Cp4.1LG02g15310 vs. ExPASy TrEMBL
Match: A0A5D3DCK1 (Germin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G00230 PE=3 SV=1)

HSP 1 Score: 197 bits (500), Expect = 1.13e-60
Identity = 107/204 (52.45%), Postives = 121/204 (59.31%), Query Frame = 0


Query: 26  VADSHNVFDSCPTATDRIDFINGFPCKNPTIVRTDDFTSAKLTGPVNTDDRFSSLVK--- 85
           +ADS+NVFD+CPTATDRI+FING+ CK+PT+V T DF SAKLT PVNTDDR + +VK   
Sbjct: 26  LADSNNVFDTCPTATDRIEFINGYHCKSPTLVTTSDFNSAKLTEPVNTDDRINLVVKIVT 85

Query: 86  ---------------------------------------------------------EFL 145
                                                                      L
Sbjct: 86  AADFHGLNTLGLSISRTDLVIDAIVSPHSHPRATEMFFLNQGIVLAGFIDTRNQLFQTIL 145

Query: 146 KPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMFEPADSSHFIDKFLDK 169
           K GDVIVFPKGLLHFCLNSGYE A  FSVYNSQNPGVVN+NGA+F+PADSSHFI+KFL +
Sbjct: 146 KAGDVIVFPKGLLHFCLNSGYEPAISFSVYNSQNPGVVNINGAVFDPADSSHFIEKFLKR 205

[Close]

BLAST of Cp4.1LG02g15310 vs. ExPASy TrEMBL
Match: A0A1S3CNX7 (Germin-like protein OS=Cucumis melo OX=3656 GN=LOC103503059 PE=3 SV=1)

HSP 1 Score: 197 bits (500), Expect = 1.13e-60
Identity = 107/204 (52.45%), Postives = 121/204 (59.31%), Query Frame = 0


Query: 26  VADSHNVFDSCPTATDRIDFINGFPCKNPTIVRTDDFTSAKLTGPVNTDDRFSSLVK--- 85
           +ADS+NVFD+CPTATDRI+FING+ CK+PT+V T DF SAKLT PVNTDDR + +VK   
Sbjct: 26  LADSNNVFDTCPTATDRIEFINGYHCKSPTLVTTSDFNSAKLTEPVNTDDRINLVVKIVT 85

Query: 86  ---------------------------------------------------------EFL 145
                                                                      L
Sbjct: 86  AADFHGLNTLGLSISRTDLVIDAIVSPHSHPRATEMFFLNQGIVLAGFIDTRNQLFQTIL 145

Query: 146 KPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMFEPADSSHFIDKFLDK 169
           K GDVIVFPKGLLHFCLNSGYE A  FSVYNSQNPGVVN+NGA+F+PADSSHFI+KFL +
Sbjct: 146 KAGDVIVFPKGLLHFCLNSGYEPAISFSVYNSQNPGVVNINGAVFDPADSSHFIEKFLKR 205

[Close]

BLAST of Cp4.1LG02g15310 vs. TAIR 10
Match: AT5G61750.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-20
Identity = 59/163 (36.20%), Postives = 72/163 (44.17%), Query Frame = 0


Query: 25  IVADSHNVFDSCPTA--TDRIDFINGFPCKNPTIVRTDDFTSAKLTGPVNTD-------- 84
           +  DS N+ D+CPTA     I FING+PCKNPT +   DF S KLT   +TD        
Sbjct: 16  VSGDSDNMQDTCPTAPGEQSIFFINGYPCKNPTKITAQDFKSTKLTEAGDTDNYLQSNVT 75

Query: 85  ----------------------------------------------------DRFSSLVK 126
                                                               D  + + +
Sbjct: 76  LLTALEFPGLNTLGLSVSRTDLERDGSVPFHSHPRSSEMLFVVKGVVFAGFVDTNNKIFQ 135

[Close]

BLAST of Cp4.1LG02g15310 vs. TAIR 10
Match: AT5G38940.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 55.8 bits (133), Expect = 3.8e-08
Identity = 43/170 (25.29%), Postives = 62/170 (36.47%), Query Frame = 0


Query: 25  IVADSHNVFDSCPTATDRID--FINGFPCKNPTIVRTDDF------TSAKLTGPVN---- 84
           I +D   + D C +A    +  F+NG  CK+P +V  DDF      T+  +T PV     
Sbjct: 23  IASDPSQLQDFCVSANTSANGVFVNGKFCKDPKLVTADDFFFSGLQTARPITSPVGSTVT 82

Query: 85  ----------------------------------------------------TDDRFSSL 131
                                                               T +  + L
Sbjct: 83  AVNVNNLLGLNTLGISLVRIDYAVNGQNPPHTHPRATEILVVEQGTLLVGFVTSNPDNRL 142

[Close]

BLAST of Cp4.1LG02g15310 vs. TAIR 10
Match: AT5G38930.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 5.0e-08
Identity = 46/183 (25.14%), Postives = 68/183 (37.16%), Query Frame = 0


Query: 25  IVADSHNVFDSCPTATDRID--FINGFPCKNPTIVRTDDF------TSAKLTGPVN---- 84
           I +D   + D C +A    +  F+NG  CK+P +V  DDF      T+  +T PV     
Sbjct: 23  IASDPSQLQDFCVSANSSANGVFVNGKFCKDPKLVTADDFFFPGLQTARPITSPVGSTVT 82

Query: 85  ----------------------------------------------------TDDRFSSL 142
                                                               T +  + L
Sbjct: 83  AVNVNNLLGLNTLGISLVRIDYAVDGQNPPHTHPRATEILVVELGTLLVGFVTSNPDNRL 142

[Close]

BLAST of Cp4.1LG02g15310 vs. TAIR 10
Match: AT3G05950.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 54.7 bits (130), Expect = 8.5e-08
Identity = 26/64 (40.62%), Postives = 37/64 (57.81%), Query Frame = 0


Query: 67  LTGPVNTDDRFSSLVKEFLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVN 126
           L G V ++   + L  + L PGDV VFP G++HF +N G   A  F+   SQNPG + + 
Sbjct: 129 LVGFVTSNQDNNRLFSKVLYPGDVFVFPIGMIHFQVNVGRTNAVAFAGLGSQNPGTITIA 188

Query: 127 GAMF 131
            A+F
Sbjct: 189 DAVF 192

[Close]

BLAST of Cp4.1LG02g15310 vs. TAIR 10
Match: AT3G04180.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 53.9 bits (128), Expect = 1.4e-07
Identity = 26/62 (41.94%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 69  GPVNTDDRFSSLVKEFLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGA 128
           G V++++   +L  + L PGDV VFPKGL+HF  N G   A + S   SQ+PG + +  A
Sbjct: 131 GFVSSNEYNYTLFTKVLYPGDVFVFPKGLIHFHANIGETNAVVISAGGSQDPGRIIIGDA 190

Query: 129 MF 131
           +F
Sbjct: 191 VF 192

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g15310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FLT3	1.6e-19	36.20	Germin-like protein subfamily 3 member 4 OS=Arabidopsis thaliana OX=3702 GN=At5g...	[more]
Q2R352	4.2e-12	29.41	Germin-like protein 11-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g053735...	[more]
Q7XSN6	1.4e-07	25.29	Germin-like protein 4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0617900...	[more]
Q6K5P9	1.8e-07	34.44	Putative germin-like protein 2-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os0...	[more]
Q9FMA8	5.3e-07	25.29	Germin-like protein subfamily 1 member 11 OS=Arabidopsis thaliana OX=3702 GN=At5...	[more]

BLAST of Cp4.1LG02g15310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023522282.1	1.61e-89	70.59	germin-like protein subfamily 3 member 4 [Cucurbita pepo subsp. pepo]	[more]
XP_022948659.1	4.10e-89	70.10	germin-like protein subfamily 3 member 4 [Cucurbita moschata] >XP_022948660.1 ge...	[more]
KAG6606852.1	5.82e-89	70.10	Germin-like protein subfamily 3 member 4, partial [Cucurbita argyrosperma subsp....	[more]
XP_022998490.1	1.66e-88	69.12	germin-like protein subfamily 3 member 4 [Cucurbita maxima]	[more]
XP_038905670.1	9.49e-68	56.37	germin-like protein subfamily 3 member 4 [Benincasa hispida]	[more]

BLAST of Cp4.1LG02g15310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GAI2	1.98e-89	70.10	Germin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111452269 PE=3 SV=1	[more]
A0A6J1KCN7	8.06e-89	69.12	Germin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111493105 PE=3 SV=1	[more]
A0A6J1DJ19	2.68e-66	54.90	Germin-like protein OS=Momordica charantia OX=3673 GN=LOC111020943 PE=3 SV=1	[more]
A0A5D3DCK1	1.13e-60	52.45	Germin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199...	[more]
A0A1S3CNX7	1.13e-60	52.45	Germin-like protein OS=Cucumis melo OX=3656 GN=LOC103503059 PE=3 SV=1	[more]

BLAST of Cp4.1LG02g15310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61750.1	1.1e-20	36.20	RmlC-like cupins superfamily protein	[more]
AT5G38940.1	3.8e-08	25.29	RmlC-like cupins superfamily protein	[more]
AT5G38930.1	5.0e-08	25.14	RmlC-like cupins superfamily protein	[more]
AT3G05950.1	8.5e-08	40.63	RmlC-like cupins superfamily protein	[more]
AT3G04180.1	1.4e-07	41.94	RmlC-like cupins superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001929	Germin	PRINTS	PR00325	GERMIN	coord: 83..103 score: 51.38 coord: 116..131 score: 41.42
IPR006045	Cupin 1	PFAM	PF00190	Cupin_1	coord: 69..128 e-value: 6.1E-12 score: 45.4
IPR014710	RmlC-like jelly roll fold	GENE3D	2.60.120.10	Jelly Rolls	coord: 78..150 e-value: 1.2E-15 score: 59.5
None	No IPR available	PANTHER	PTHR31238	GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3	coord: 22..80 coord: 79..149
None	No IPR available	PANTHER	PTHR31238:SF3	GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 4	coord: 22..80 coord: 79..149
IPR011051	RmlC-like cupin domain superfamily	SUPERFAMILY	51182	RmlC-like cupins	coord: 83..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g15310.1	Cp4.1LG02g15310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0030145	manganese ion binding