Cp4.1LG02g14940 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g14940
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG02: 13772237 .. 13772923 (+)
RNA-Seq Expression	Cp4.1LG02g14940
Synteny	Cp4.1LG02g14940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGCGTAATGTCTATGGACCATGAGGAAGGTAGCATGTTGGTGGTGTGTTTTCCCGTTCGATTAATTGTCACTCGTGTCTATGGACTATGGGGAAGGCTCATTCTGTCTGCTCTGTTGGTCCAACAAGGTTTCCTAAGGTGAAAGGCTGTATTTGAGTTTTCAAGCAAGGAACTCGATACCGCCTCTTGTTCTTCTCTGATTCAATTCATGTTACTTGCAGCCGTTGATGGACTGATCATTGTTGCAGGACTTGGCAAAAGCTTTAGTTGGCATGCATCTCGAGAGGTCGGAGATGATCTCTCGAGTCTCGACCCATATCACCACAGCATTAGACAGAATGCAAGGAGGGAGAGAAAGACATCATCTCAAGTTATAAATGAAGCTGAAGAACATGCAGAAACAGTGGCTTGTTAGATCCTATATTTTTGACCTGGGATCTCTGTTCTTGGAAGAGCATGTTTTTGAATCTTGGGCGCCTATGTTTCTCTTGTCATGGATTCTGTTCTTGTCTGGTAACTATCCTGTGTAAAGGGGAAATGTAGATTACAGCATGAGTTTTCCATCTTTTGTGATGCAAAAGGTATTCATAAGGGGAAATATTGTTTATTCATTCTTTCATTGCTGCTCATATCCGATAATAACAAAATTAATAAAGGTATTCATAAGGGTTTCTTAGTGTTC

mRNA sequence

ATGGAGAGCGTAATGTCTATGGACCATGAGGAAGGTAGCATGTTGGTGGTGTGTTTTCCCGTTCGATTAATTGTCACTCGTGTCTATGGACTATGGGGAAGGCTCATTCTGTCTGCTCTGTTGGTCCAACAAGCCGTTGATGGACTGATCATTGTTGCAGGACTTGGCAAAAGCTTTAGTTGGCATGCATCTCGAGAGGTCGGAGATGATCTCTCGAGTCTCGACCCATATCACCACAGCATTAGACAGAATGCAAGGAGGGAGAGAAAGACATCATCTCAAGTTATAAATGAAGCTGAAGAACATGCAGAAACAGTGGCTTGTTAGATCCTATATTTTTGACCTGGGATCTCTGTTCTTGGAAGAGCATGTTTTTGAATCTTGGGCGCCTATGTTTCTCTTGTCATGGATTCTGTTCTTGTCTGGTAACTATCCTGTGTAAAGGGGAAATGTAGATTACAGCATGAGTTTTCCATCTTTTGTGATGCAAAAGGTATTCATAAGGGGAAATATTGTTTATTCATTCTTTCATTGCTGCTCATATCCGATAATAACAAAATTAATAAAGGTATTCATAAGGGTTTCTTAGTGTTC

Coding sequence (CDS)

ATGGAGAGCGTAATGTCTATGGACCATGAGGAAGGTAGCATGTTGGTGGTGTGTTTTCCCGTTCGATTAATTGTCACTCGTGTCTATGGACTATGGGGAAGGCTCATTCTGTCTGCTCTGTTGGTCCAACAAGCCGTTGATGGACTGATCATTGTTGCAGGACTTGGCAAAAGCTTTAGTTGGCATGCATCTCGAGAGGTCGGAGATGATCTCTCGAGTCTCGACCCATATCACCACAGCATTAGACAGAATGCAAGGAGGGAGAGAAAGACATCATCTCAAGTTATAAATGAAGCTGAAGAACATGCAGAAACAGTGGCTTGTTAG

Protein sequence

MESVMSMDHEEGSMLVVCFPVRLIVTRVYGLWGRLILSALLVQQAVDGLIIVAGLGKSFSWHASREVGDDLSSLDPYHHSIRQNARRERKTSSQVINEAEEHAETVAC

Homology

[Close]

BLAST of Cp4.1LG02g14940 vs. NCBI nr
Match: KAG6606791.1 (hypothetical protein SDJN03_00133, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 193 bits (490), Expect = 6.98e-61
Identity = 102/108 (94.44%), Postives = 102/108 (94.44%), Query Frame = 0


Query: 1   MESVMSMDHEEGSMLVVCFPVRLIVTRVYGLWGRLILSALLVQQAVDGLIIVAGLGKSFS 60
           ME VMSMDH EGSMLVVCFPVRLIVTRVYGLWGRLILSALLVQQAV GLIIVAGLGKSFS
Sbjct: 51  MERVMSMDHGEGSMLVVCFPVRLIVTRVYGLWGRLILSALLVQQAV-GLIIVAGLGKSFS 110

Query: 61  WHASREVGDDLSSLDPYHHSIRQNARRERKTSSQVINEAEEHAETVAC 108
           WHASREVGDD SSLDPYHHSIRQNARRERKTS QVIN AEEHAETVAC
Sbjct: 111 WHASREVGDDPSSLDPYHHSIRQNARRERKTSPQVINVAEEHAETVAC 157

[Close]

BLAST of Cp4.1LG02g14940 vs. NCBI nr
Match: KAG7036502.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 48.9 bits (115), Expect = 7.34e-04
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 45  AVDGLIIVAGLGKSFSWHASREVGDDLSS 73
           +VDGLIIVAGLGKSFSWHASRE+   L S
Sbjct: 335 SVDGLIIVAGLGKSFSWHASRELITTLPS 363

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g14940 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g14940 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6606791.1	6.98e-61	94.44	hypothetical protein SDJN03_00133, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7036502.1	7.34e-04	79.31	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]

BLAST of Cp4.1LG02g14940 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g14940 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 82..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g14940.1	Cp4.1LG02g14940.1	mRNA