Cp4.1LG02g14930 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g14930
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Aspartate racemase
Location	Cp4.1LG02: 13778790 .. 13781169 (+)
RNA-Seq Expression	Cp4.1LG02g14930
Synteny	Cp4.1LG02g14930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCAAAATCGTCATCTACTAGCAAATTGTATCAAATTTCATTTGTATATATATAACTTAAGTTGGTAGTGGTGATGATGAGTACTACAATGGTGGGGGCAAATGTACACGAAGTTTGGTGAGAACGTAAGAGAAAGGACAAAGAATTTGTGGTTTTATGCCCTTGAATGTTTAGTTTTGGCCAAATTTATGATACCTCATCTAGCGTGTTACATGCACTATTCACCAGAAAAAGGAGGAGGAAAAAACCAAACCAGATCACGCCATCAACCATGCCGAATAGAAGGGCATTGGGAGGGGGATTTGGTTCCAACTCGCCCCAATTGGATCTTCTAAATTGTAACTATTCACTTTGTCCTTACTCATTTCACTTCTTGATTCTCGCCCAAATTTCTTAATCTTCGGCATGTTGCTGCTAATTATATGGACACGGTTTCATTCGCAGATTCACATTTCATTGTATGTTATTGTTGTGTATGCATTTACGGCCTTCTACTACTTGCTGGATATTAGGAAGGTGTTCTGTGAATTGATCTACTCTGAACTTATTGGGAAAATTAGTTAAATGTTACCTTCCTTCTGTTCTTTGCTGTGACCCAACTTTTAGTAATGACCTCTAAGTGTTTGATAAAAGTTCTCACCCAGTTTACTGCTCCATGAGTGAGGATAGCCTGGACTCTGGAGCTGTAGTGGAGACTTTGAAGACTTTGTTAGGCCTTGTTATGTATCTCATTTATGGTATGAAGATGTTTCAAGAGGGTGTCCTGTTACATTCCTTCACATGCCTGATTGTGTTGCTAGACAGCTCAAGGAAGCTAAGTTGAAGCTACTTGAAGCTGGGAGTTCACTACGGATAGGAGTTCTTGCAACTAATGCAATTTTCAAGTGCTGGATATTATAAGGAGAAACTGCAGAATGAAGTAGGCATCTCGTCATTGTTTTTGAACTTCATAGATCTTGAAGATCTTGTCCCTGAAAGATTATTTGGGAATGATTTTACCACAAAGGACTCGTCGTAGTTACAACATAGCTGTAACAGCCTAAGTCCACTAAGTCCACGGTTAATAGATATTGTCCTCTTTGCGTTTTTCTTGCGGACTTGCTCTCAAGGTTTTTAAAAGTACGTTCTCCTCCCCAATCGATGTGGGATCTCACAATCCACCCCCTTCGGGGCCCAACGTCGCACTCGTTTTCCTCTCCAATCGATGTTGTTCCCCTCTACAATCGATGTGGGATCTCACAATCCACCCTCCTTCGGGACCTAGCGTTCTTGCTGGCACTCGTTCCTCTCTTCAATCGATATGGGATCTCACAATCCACCCCCTTTGGGGGCTAGCGTCCTTGCTGGCACTCGTTCCTCTCTCCAATCAATGTGGGATCTAACAATCCACCCCCCTTCGGAGCCCAGCGTCTTCGTTGGCACACTGCCAAGTGTCCACCCTCTCGGGGCTCAACGTCCTCGCTGGCACACTGCTAGATGTCTAGTTCTAATACCACACAATTCAAGCCCACCGCTAGCAGATATTGTCCTCTTTGAGGTTCTCTTTTGGGCTTCCCCTCAAAATTTTTAGAATATGGTTTCCACACAGTTGTAAGAAATGCTTCGTTCTCCTGCCCAAATGATGTGGGATCTCGATAAAGCAACTATGGAACATACCGCAATTCCTGCTATTGAGGCTTTAAACAGGAATGATATAGAAGAACGGAATTCACTAAGAATTTCACTTCAAGTTCTTTATGGTGAGGGCTGTCAACTGTCATCCTTGTCTCTGATTATATGCGAGATCTTTTGCCTCGGGATGCTCCCCTTCTTAAGAAATGCATCAACCCTATAAATGCATTAGCAAGGTCCACTATCCCTTGTTTACAAGTTTGGTCTGCTAGTGATGGGTTTGGACCGTTACATGGTTACAAGGTAGTTTTTAATTGTTTACAAGTTTGGTCTGACATAGTAACTTAGAGAAAGGTATAGTTGTTCACTTCATGCTCTCGGCCCCTCACTAGAACCACTTGGAATTCCCATAGACTGAGATTGAGACAAGATGCAACAATGACTATAATACTAGAACTGCGAAATTATGGTCATCTCTGAATTTTAAATTTTGTTCTGAGTTTATATGCATTTAATCTATCTCATAATCTTAAATTATTCATATGACATCCTGTGTTGCAACATACTCTCTAATGCATGACTTCTTGCCTCCAAATACTCCTTGCGGCCTTGTTGAATCATTGAACAGGATTAGTCATTCAGTTCACTCTCTGAATTCCTATGATGAACATCTTAGCTCGACATGTTATGCTCGGAGTGTCATGATCTTGTTTGTTGAAACTTGATTACTAGAATTGTAATTTTATTTCAAGATTAGCAAAGTAA

mRNA sequence

ATGGTTGGTAGTGGTGATGATGAGTACTACAATGGTGGGGGCAAATGTACACGAATTTACTGCTCCATGAGTGAGGATAGCCTGGACTCTGGAGCTGTAGTGGAGACTTTGAAGACTTTGTTAGGCCTTGTTATGTATCTCATTTATGATGTTTCAAGAGGGTGTCCTGTTACATTCCTTCACATGCCTGATTGTGTTGCTAGACAGCTCAAGGAAGCTAAGTTGAAGCTACTTGAAGCTGGGAGTTCACTACGGATAGGAGTTCTTGCAACTAATGCAATTTTCAAATTAGCAAAGTAA

Coding sequence (CDS)

ATGGTTGGTAGTGGTGATGATGAGTACTACAATGGTGGGGGCAAATGTACACGAATTTACTGCTCCATGAGTGAGGATAGCCTGGACTCTGGAGCTGTAGTGGAGACTTTGAAGACTTTGTTAGGCCTTGTTATGTATCTCATTTATGATGTTTCAAGAGGGTGTCCTGTTACATTCCTTCACATGCCTGATTGTGTTGCTAGACAGCTCAAGGAAGCTAAGTTGAAGCTACTTGAAGCTGGGAGTTCACTACGGATAGGAGTTCTTGCAACTAATGCAATTTTCAAATTAGCAAAGTAA

Protein sequence

MVGSGDDEYYNGGGKCTRIYCSMSEDSLDSGAVVETLKTLLGLVMYLIYDVSRGCPVTFLHMPDCVARQLKEAKLKLLEAGSSLRIGVLATNAIFKLAK

Homology

[Close]

BLAST of Cp4.1LG02g14930 vs. NCBI nr
Match: XP_023524613.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111788510 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 115 bits (289), Expect = 5.82e-30
Identity = 65/76 (85.53%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 23 MSEDSLDSGAVVETLKTLLG--LVMYLIY-DVSRGCPVTFLHMPDCVARQLKEAKLKLLE 82
          MSEDSLDSGAVVETLK  +    V +L Y DVSRGCPVTFLHMPDCVARQLKEAKLKLLE
Sbjct: 1  MSEDSLDSGAVVETLKXFVRPCYVSHLWYEDVSRGCPVTFLHMPDCVARQLKEAKLKLLE 60

Query: 83 AGSSLRIGVLATNAIF 95
          AGSSLRIGVLATNAIF
Sbjct: 61 AGSSLRIGVLATNAIF 76

[Close]

BLAST of Cp4.1LG02g14930 vs. NCBI nr
Match: XP_022955999.1 (uncharacterized protein LOC111457829 [Cucurbita moschata])

HSP 1 Score: 85.9 bits (211), Expect = 2.15e-17
Identity = 51/82 (62.20%), Postives = 58/82 (70.73%), Query Frame = 0


Query: 28  LDSGAVVETLKTLLGL--------------VMYLIY-DVSRGCPVTFLHMPDCVARQLKE 87
           LDSG +VE+LK+   L              + +L Y DVS+GCPVTFLHM DCVAR+LKE
Sbjct: 144 LDSGPLVESLKSKRDLLEKSGARCIVMPCHISHLWYEDVSKGCPVTFLHMADCVARELKE 203

Query: 88  AKLKLLEAGSSLRIGVLATNAI 94
           AKLK LEAGS LRIGVLATNAI
Sbjct: 204 AKLKPLEAGSPLRIGVLATNAI 225

[Close]

BLAST of Cp4.1LG02g14930 vs. NCBI nr
Match: KAG6581916.1 (hypothetical protein SDJN03_21918, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.5 bits (210), Expect = 2.84e-17
Identity = 53/87 (60.92%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 24  SED-SLDSGAVVETLKTLLGL--------------VMYLIY-DVSRGCPVTFLHMPDCVA 83
           SED  LDSG +VE+LK+                  + +L Y DVS+GCPVTFLHM DCVA
Sbjct: 139 SEDLGLDSGPLVESLKSKRDFLEKSGARCIVMPCHISHLWYEDVSKGCPVTFLHMADCVA 198

Query: 84  RQLKEAKLKLLEAGSSLRIGVLATNAI 94
           R+LKEAKLK LEAGS LRIGVLATNAI
Sbjct: 199 RELKEAKLKPLEAGSPLRIGVLATNAI 225

[Close]

BLAST of Cp4.1LG02g14930 vs. NCBI nr
Match: XP_023528030.1 (uncharacterized protein LOC111791072 [Cucurbita pepo subsp. pepo] >XP_023528032.1 uncharacterized protein LOC111791072 [Cucurbita pepo subsp. pepo] >XP_023528033.1 uncharacterized protein LOC111791072 [Cucurbita pepo subsp. pepo] >XP_023528034.1 uncharacterized protein LOC111791072 [Cucurbita pepo subsp. pepo] >KAG7018350.1 hypothetical protein SDJN02_20218 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.5 bits (210), Expect = 2.99e-17
Identity = 53/87 (60.92%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 24  SED-SLDSGAVVETLKTLLGL--------------VMYLIY-DVSRGCPVTFLHMPDCVA 83
           SED  LDSG +VE+LK+                  + +L Y DVS+GCPVTFLHM DCVA
Sbjct: 139 SEDLGLDSGPLVESLKSKRDFLEKSGARCIVMPCHISHLWYEDVSKGCPVTFLHMADCVA 198

Query: 84  RQLKEAKLKLLEAGSSLRIGVLATNAI 94
           R+LKEAKLK LEAGS LRIGVLATNAI
Sbjct: 199 RELKEAKLKPLEAGSPLRIGVLATNAI 225

[Close]

BLAST of Cp4.1LG02g14930 vs. NCBI nr
Match: XP_022980019.1 (uncharacterized protein LOC111479549 [Cucurbita maxima] >XP_022980020.1 uncharacterized protein LOC111479549 [Cucurbita maxima] >XP_022980021.1 uncharacterized protein LOC111479549 [Cucurbita maxima])

HSP 1 Score: 84.3 bits (207), Expect = 8.04e-17
Identity = 52/87 (59.77%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 24  SED-SLDSGAVVETLKTLLGL--------------VMYLIY-DVSRGCPVTFLHMPDCVA 83
           SED  LDSG +VE+LK+                  + +L Y DVS+GCPVTFLHM DCVA
Sbjct: 139 SEDLGLDSGPLVESLKSKRDFLEKSGARCIVMPCHISHLWYEDVSKGCPVTFLHMADCVA 198

Query: 84  RQLKEAKLKLLEAGSSLRIGVLATNAI 94
           R+L+EAKLK LEAGS LRIGVLATNAI
Sbjct: 199 RELREAKLKPLEAGSPLRIGVLATNAI 225

[Close]

BLAST of Cp4.1LG02g14930 vs. ExPASy TrEMBL
Match: A0A6J1GXT9 (uncharacterized protein LOC111457829 OS=Cucurbita moschata OX=3662 GN=LOC111457829 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.04e-17
Identity = 51/82 (62.20%), Postives = 58/82 (70.73%), Query Frame = 0


Query: 28  LDSGAVVETLKTLLGL--------------VMYLIY-DVSRGCPVTFLHMPDCVARQLKE 87
           LDSG +VE+LK+   L              + +L Y DVS+GCPVTFLHM DCVAR+LKE
Sbjct: 144 LDSGPLVESLKSKRDLLEKSGARCIVMPCHISHLWYEDVSKGCPVTFLHMADCVARELKE 203

Query: 88  AKLKLLEAGSSLRIGVLATNAI 94
           AKLK LEAGS LRIGVLATNAI
Sbjct: 204 AKLKPLEAGSPLRIGVLATNAI 225

[Close]

BLAST of Cp4.1LG02g14930 vs. ExPASy TrEMBL
Match: A0A6J1IUZ5 (uncharacterized protein LOC111479549 OS=Cucurbita maxima OX=3661 GN=LOC111479549 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.89e-17
Identity = 52/87 (59.77%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 24  SED-SLDSGAVVETLKTLLGL--------------VMYLIY-DVSRGCPVTFLHMPDCVA 83
           SED  LDSG +VE+LK+                  + +L Y DVS+GCPVTFLHM DCVA
Sbjct: 139 SEDLGLDSGPLVESLKSKRDFLEKSGARCIVMPCHISHLWYEDVSKGCPVTFLHMADCVA 198

Query: 84  RQLKEAKLKLLEAGSSLRIGVLATNAI 94
           R+L+EAKLK LEAGS LRIGVLATNAI
Sbjct: 199 RELREAKLKPLEAGSPLRIGVLATNAI 225

[Close]

BLAST of Cp4.1LG02g14930 vs. ExPASy TrEMBL
Match: A0A0A0KVD7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004850 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.03e-16
Identity = 53/87 (60.92%), Postives = 59/87 (67.82%), Query Frame = 0


Query: 24  SED-SLDSGAVVETLKTLLGL--------------VMYLIY-DVSRGCPVTFLHMPDCVA 83
           SED  LDS  VVE+LK+                  + +L Y DVS+GCPVTFLHM DCVA
Sbjct: 138 SEDLGLDSELVVESLKSKRTFLENSGARCIVMPCHISHLWYEDVSKGCPVTFLHMADCVA 197

Query: 84  RQLKEAKLKLLEAGSSLRIGVLATNAI 94
           R+LKEAKLK LEAGS LRIGVLATNAI
Sbjct: 198 RELKEAKLKPLEAGSPLRIGVLATNAI 224

[Close]

BLAST of Cp4.1LG02g14930 vs. ExPASy TrEMBL
Match: A0A1S4E0P1 (probable amino-acid racemase OS=Cucumis melo OX=3656 GN=LOC103494713 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.44e-16
Identity = 57/87 (65.52%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 24  SED-SLDSGAVVETLK---TLLG------LVM-----YLIY-DVSRGCPVTFLHMPDCVA 83
           SED  LDS  VVE+LK   T L       +VM     +L Y DVS+GCPVTFLHM DCVA
Sbjct: 138 SEDLGLDSELVVESLKRKRTFLENSGARCIVMPCHISHLWYEDVSKGCPVTFLHMADCVA 197

Query: 84  RQLKEAKLKLLEAGSSLRIGVLATNAI 94
           R+LKEAKLK LEAGS LRIGVLATNAI
Sbjct: 198 RELKEAKLKPLEAGSPLRIGVLATNAI 224

[Close]

BLAST of Cp4.1LG02g14930 vs. ExPASy TrEMBL
Match: A0A6J1DHC6 (uncharacterized protein LOC111021093 OS=Momordica charantia OX=3673 GN=LOC111021093 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.98e-16
Identity = 50/82 (60.98%), Postives = 55/82 (67.07%), Query Frame = 0


Query: 28  LDSGAVVETLKTLLGL--------------VMYLIY-DVSRGCPVTFLHMPDCVARQLKE 87
           LDSG VVE+LK                   + +L Y DVS+GCPVTFLHM DCVAR+LKE
Sbjct: 142 LDSGLVVESLKGKRAFLEKSGARCIVMPCHISHLWYEDVSKGCPVTFLHMADCVARELKE 201

Query: 88  AKLKLLEAGSSLRIGVLATNAI 94
           AKLK LEAGS L IGVLATNAI
Sbjct: 202 AKLKPLEAGSPLSIGVLATNAI 223

[Close]

BLAST of Cp4.1LG02g14930 vs. TAIR 10
Match: AT1G15410.1 (aspartate-glutamate racemase family )

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-07
Identity = 24/44 (54.55%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 50  DVSRGCPVTFLHMPDCVARQLKEAKLKLLEAGSSLRIGVLATNA 94
           +V  G  V  LHM +C+A++L+EAK+K LEAG+ LR+GV+AT+A
Sbjct: 182 EVCEGSLVPLLHMGECIAKELQEAKMKPLEAGNPLRVGVMATSA 225

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g14930 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g14930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023524613.1	5.82e-30	85.53	LOW QUALITY PROTEIN: uncharacterized protein LOC111788510 [Cucurbita pepo subsp....	[more]
XP_022955999.1	2.15e-17	62.20	uncharacterized protein LOC111457829 [Cucurbita moschata]	[more]
KAG6581916.1	2.84e-17	60.92	hypothetical protein SDJN03_21918, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023528030.1	2.99e-17	60.92	uncharacterized protein LOC111791072 [Cucurbita pepo subsp. pepo] >XP_023528032....	[more]
XP_022980019.1	8.04e-17	59.77	uncharacterized protein LOC111479549 [Cucurbita maxima] >XP_022980020.1 uncharac...	[more]

BLAST of Cp4.1LG02g14930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GXT9	1.04e-17	62.20	uncharacterized protein LOC111457829 OS=Cucurbita moschata OX=3662 GN=LOC1114578...	[more]
A0A6J1IUZ5	3.89e-17	59.77	uncharacterized protein LOC111479549 OS=Cucurbita maxima OX=3661 GN=LOC111479549...	[more]
A0A0A0KVD7	1.03e-16	60.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004850 PE=3 SV=1	[more]
A0A1S4E0P1	1.44e-16	65.52	probable amino-acid racemase OS=Cucumis melo OX=3656 GN=LOC103494713 PE=3 SV=1	[more]
A0A6J1DHC6	1.98e-16	60.98	uncharacterized protein LOC111021093 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]

BLAST of Cp4.1LG02g14930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15410.1	1.1e-07	54.55	aspartate-glutamate racemase family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21198	GLUTAMATE RACEMASE	coord: 50..96
IPR004380	Aspartate racemase	PANTHER	PTHR21198:SF7	ASPARTATE-GLUTAMATE RACEMASE FAMILY	coord: 50..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g14930.1	Cp4.1LG02g14930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006807	nitrogen compound metabolic process
molecular_function	GO:0047661	amino-acid racemase activity