Cp4.1LG02g14200 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g14200
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	mediator of RNA polymerase II transcription subunit 9-like
Location	Cp4.1LG02: 14113867 .. 14116609 (-)
RNA-Seq Expression	Cp4.1LG02g14200
Synteny	Cp4.1LG02g14200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTAGGCCCATGTTTGTAAAGGCAGACAATTATCTCGCAGGTCTCCAAAATGACTGTTTGAATGTAAAAAGTAAAACTCAAAAACTCGCATCTCCGGCAATCCAACTCTTTAAAACAAGAGCCGGCCATATGTAAGTACAGTAGGGCGATCGGAGTCCGTCGAGAACTAACCGGAGCTTGAGCATAAGCCTCTTGTCCCAAACAATCGCAAGCCCTAGCAAGAAATCGGCGATATGGATTTCTCTGGAGGAGGAAACTGGAGCATGATCCCCAACATCCCTACTCTCAGCAACTCCTCTAACCTTTCCAATCAAGAATCCCTTTACCTTCAACAGCAGCAATTCTCCCTTCAGCAGCAGCAGCAGCAGCAACAACAGCAACTATCCTTTCACCACCAGCCACAGCAATTCCAGCCCCAAATTCAACCCCAACAGCAATTTCAGCAGCAACAATCCTCCCCCCAATTTCAACAGCTACAACCCTCTCCTCAAATTCAGCCCCAACAACAACTCTCCACCCAATTCCAGCAGCAAATGCAACCCCAACATTTCCCCCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAATATCATTTTCAACAACAACAGCAGCGGCTTCTTCAACAGCAGCAGCAGCAACAGAAACAGCAGCAATATCATCAACACCAGTCTCTGGCTTCCCATTTTCATCTATTTCATGTAATGCCTTCAGAAACCCTGAATTTTGAGTGTTCTCTAATCTCCGTGTTTTGCGTTTGTTGACTTTCTTGGATGTTTTGTGTGTTGTAGCTTGTGGAGAAATTAGCGGATGCGATTGAGACGGGAGTTAGAGATCAGCAATCGGATGCATTGGTATCAATTTTGATTCTTTTTTGAAATTTTCTCTCAAGATTAATCATACCGTTGTTTCCTCTAATAATTTGTTCATTTAACGTTTTGGAAGGTCAACGATCTGAACAACCACTTTGAGAAATGCCAGCAACTGTTAAACTCGATATCTGGATCACTCAGCTCAAAGGCTATGGTAAAGTTGAAATGAGAAATCCATCACTACAAATGAGATATCACAATTTTTTTTTTTTTTTTTTTTTGTTGCAGACAGTAGAGGGACAGAAGAAGAAGCTGGAAGAACATGAGCAGTTGTTAAGTTATAGAAGGTATGGTGGTAACCAATTTTTGGCTGTGGTTTGCATTAAACTGTCTTCTTCATCAATGGTCCTACTGATGATTCTCTATTAAAAAAGGGAACTGATTGGCAAATATAAGAGCTCCGTTGAAGAGCTTGTCAAGGGCGAGCCTTAGCCACTTCTCACCCATTCCTAATTAGGTAATACTTTCATTTATATTTACAATTTCTTTTCCGTTTATCTCAATTGTCCAAGGTTCTGTTTGGCTTTCCTTCTCTATGTTGTCATCTTTTGCTAAATGGTTTGGTTGTGGGGTTGAAATTGAAAAGTGGTTTTCAGGAAAGAAATTCACACACCAAAACATAAATTATTTAAGATTAGTTTTTGTACATTCTCAACACTAAATGTTGTTTAGGTATCTTCTCATGATATCACCTTAGGACTGAGTTGAGGGTCATAGAGTTTCTCTGCTACTTCCTCTCCCACATTCCCTCGAAACGTAAGCGTTTCTGGTCTACAAGTGGGTTCGAAGTTGAATACAATTCAGATATTGTGTGTATTGATCTGTTATGTATGGTTCTAGATGTCTTAGGTGTTAGCTGCATAATAGTCGATCCACACTTTTTGTTGACATGTTTTGGGATGCGAGAAAAAGGAATGTACAGTTACATTTCGGAGAGAGTATACCAAACGCTTGTATATGGATATGAATTTTCAATCGATTCAACGCCATCTGTGCTTTCCTTCAATTTTGGTTCAAATTCATTTAAATTGTCTCTTATCAAAAGAAAGGAAAAAGAAACTTGAAGTACATACTTATGAATTCTACACCATTTCAGGCCTGGCTAGCATCATGTACCTGTTTTGAAGGGATGTGAAAAGAGCTGCTTTCACCGGGTCTTGCAATTCCATGGAGGGGCTTTTATCTAATCTGCCTCCCTGCATTTCATAACACGATGATATGATGCACAGTTGAATTCAATCCTCTCTGTTCTCTTCGACTTTTTCAGAAACTTCTGTTACCTCTAACGTATCTTGTACAGTTATTCCAACAGTTGACTTCTAAAATTAATGAACAGTAGATAAATGTTAATTTTGGATTGATGCTCCACTGTTATATCATTAGCTAAATGCAGCCTTAAGTGACCATTTTTCATTTTGAATTTCCTTAATTAAGGATAAACCATCATCAGCTTCACACATATGGAGAGAGCTTTCTAGTAAAAGATTTCAGTAATGTTGTTCTTGAACATTCTATTCAATAATACTATCATCAAAATCTCGACTTTCAATCTGAAGAGCCAAATCATGAAGAATTTCATCAACTCTCTCTAAACCTTCTTGCATTGAGTTTCCTGCTTTGAACATATAAACCTTTTTCTTCACCTCAATCCAGCTGCACCCAGGAACTTTTTTTAAACCCTTCATCCTTGCCGAGATCCTGACCCTCGCAGAGTCCTCCCATCTACAGCTTGCAGAATAAATATTCGACAGCAACATATGGCTTCCTGTTATCTCGGAATCCAGACTTAAAATCTGAGAGCCAGTTTCTTCTGCTAGATCTGTATCCTTGTGCATCCTGCAAGAGTTGAGAAGAGCACTCCAGATATAAGC

mRNA sequence

ATGTTTAGGCCCATGTTTGTAAAGGCAGACAATTATCTCGCAGGTCTCCAAAATGACTGTTTGAATCTTGTGGAGAAATTAGCGGATGCGATTGAGACGGGAGTTAGAGATCAGCAATCGGATGCATTGGTCAACGATCTGAACAACCACTTTGAGAAATGCCAGCAACTGTTAAACTCGATATCTGGATCACTCAGCTCAAAGGCTATGACAGTAGAGGGACAGAAGAAGAAGCTGGAAGAACATGAGCAGTTGTTAAGTTATAGAAGGGAACTGATTGGCAAATATAAGAGCTCCGTTGAAGAGCTTGTCAAGGGCGAGCCTTAGCCACTTCTCACCCATTCCTAATTAGGCCTGGCTAGCATCATGTACCTGTTTTGAAGGGATGTGAAAAGAGCTGCTTTCACCGGGTCTTGCAATTCCATGGAGGGGCTTTTATCTAATCTGCCTCCCTGCATTTCATAACACGATGATATGATGCACAGTTGAATTCAATCCTCTCTGTTCTCTTCGACTTTTTCAGAAACTTCTGTTACCTCTAACGTATCTTGTACAGTTATTCCAACAGTTGACTTCTAAAATTAATGAACAGTAGATAAATGTTAATTTTGGATTGATGCTCCACTGTTATATCATTAGCTAAATGCAGCCTTAAGTGACCATTTTTCATTTTGAATTTCCTTAATTAAGGATAAACCATCATCAGCTTCACACATATGGAGAGAGCTTTCTAGTAAAAGATTTCAGTAATGTTGTTCTTGAACATTCTATTCAATAATACTATCATCAAAATCTCGACTTTCAATCTGAAGAGCCAAATCATGAAGAATTTCATCAACTCTCTCTAAACCTTCTTGCATTGAGTTTCCTGCTTTGAACATATAAACCTTTTTCTTCACCTCAATCCAGCTGCACCCAGGAACTTTTTTTAAACCCTTCATCCTTGCCGAGATCCTGACCCTCGCAGAGTCCTCCCATCTACAGCTTGCAGAATAAATATTCGACAGCAACATATGGCTTCCTGTTATCTCGGAATCCAGACTTAAAATCTGAGAGCCAGTTTCTTCTGCTAGATCTGTATCCTTGTGCATCCTGCAAGAGTTGAGAAGAGCACTCCAGATATAAGC

Coding sequence (CDS)

ATGTTTAGGCCCATGTTTGTAAAGGCAGACAATTATCTCGCAGGTCTCCAAAATGACTGTTTGAATCTTGTGGAGAAATTAGCGGATGCGATTGAGACGGGAGTTAGAGATCAGCAATCGGATGCATTGGTCAACGATCTGAACAACCACTTTGAGAAATGCCAGCAACTGTTAAACTCGATATCTGGATCACTCAGCTCAAAGGCTATGACAGTAGAGGGACAGAAGAAGAAGCTGGAAGAACATGAGCAGTTGTTAAGTTATAGAAGGGAACTGATTGGCAAATATAAGAGCTCCGTTGAAGAGCTTGTCAAGGGCGAGCCTTAG

Protein sequence

MFRPMFVKADNYLAGLQNDCLNLVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSYRRELIGKYKSSVEELVKGEP

Homology

[Close]

BLAST of Cp4.1LG02g14200 vs. ExPASy Swiss-Prot
Match: Q8RWA2 (Mediator of RNA polymerase II transcription subunit 9 OS=Arabidopsis thaliana OX=3702 GN=MED9 PE=1 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 9.6e-26
Identity = 59/85 (69.41%), Postives = 71/85 (83.53%), Query Frame = 0


Query: 23  LVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEH 82
           +VEKLAD IE G RDQ SDALVN+LN+HF+KCQQLLNSISGSL SK MTV+GQK+ +EE 
Sbjct: 159 MVEKLADVIENGTRDQNSDALVNELNSHFDKCQQLLNSISGSLGSKTMTVDGQKRNVEES 218

Query: 83  EQLLSYRRELIGKYKSSVEELVKGE 108
           EQLL  RR+LI +Y+ S+EE+V  E
Sbjct: 219 EQLLQQRRDLIVEYRKSIEEIVTME 243

[Close]

BLAST of Cp4.1LG02g14200 vs. NCBI nr
Match: XP_023523773.1 (mediator of RNA polymerase II transcription subunit 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162 bits (409), Expect = 1.86e-47
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 22  NLVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEE 81
           +LVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEE
Sbjct: 155 HLVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEE 214

Query: 82  HEQLLSYRRELIGKYKSSVEELVKGEP 108
           HEQLLSYRRELIGKYKSSVEELVKGEP
Sbjct: 215 HEQLLSYRRELIGKYKSSVEELVKGEP 241

[Close]

BLAST of Cp4.1LG02g14200 vs. NCBI nr
Match: XP_022997827.1 (mediator of RNA polymerase II transcription subunit 9-like [Cucurbita maxima])

HSP 1 Score: 162 bits (409), Expect = 1.91e-47
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 22  NLVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEE 81
           +LVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEE
Sbjct: 156 HLVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEE 215

Query: 82  HEQLLSYRRELIGKYKSSVEELVKGEP 108
           HEQLLSYRRELIGKYKSSVEELVKGEP
Sbjct: 216 HEQLLSYRRELIGKYKSSVEELVKGEP 242

[Close]

BLAST of Cp4.1LG02g14200 vs. NCBI nr
Match: KAG6606716.1 (hypothetical protein SDJN03_00058, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 160 bits (405), Expect = 7.70e-47
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 22  NLVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEE 81
           + VEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEE
Sbjct: 156 HFVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEE 215

Query: 82  HEQLLSYRRELIGKYKSSVEELVKGEP 108
           HEQLLSYRRELIGKYKSSVEELVKGEP
Sbjct: 216 HEQLLSYRRELIGKYKSSVEELVKGEP 242

[Close]

BLAST of Cp4.1LG02g14200 vs. NCBI nr
Match: XP_022949500.1 (mediator of RNA polymerase II transcription subunit 9-like [Cucurbita moschata])

HSP 1 Score: 159 bits (402), Expect = 2.19e-46
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 22  NLVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEE 81
           +LVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEE
Sbjct: 156 HLVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEE 215

Query: 82  HEQLLSYRRELIGKYKSSVEELVKGEP 108
           HEQLLSYRRELIGKYKSSVEEL KGEP
Sbjct: 216 HEQLLSYRRELIGKYKSSVEELGKGEP 242

[Close]

BLAST of Cp4.1LG02g14200 vs. NCBI nr
Match: XP_016900408.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 9, partial [Cucumis melo])

HSP 1 Score: 157 bits (396), Expect = 2.76e-45
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 21  LNLVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLE 80
           L+LVEKLADAIE G RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLE
Sbjct: 171 LHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLE 230

Query: 81  EHEQLLSYRRELIGKYKSSVEELVKGEP 108
           EHEQLLS+RRELIGKYK+SVEELVKGEP
Sbjct: 231 EHEQLLSHRRELIGKYKNSVEELVKGEP 258

[Close]

BLAST of Cp4.1LG02g14200 vs. ExPASy TrEMBL
Match: A0A6J1K651 (mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita maxima OX=3661 GN=LOC111492669 PE=4 SV=1)

HSP 1 Score: 162 bits (409), Expect = 9.26e-48
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 22  NLVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEE 81
           +LVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEE
Sbjct: 156 HLVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEE 215

Query: 82  HEQLLSYRRELIGKYKSSVEELVKGEP 108
           HEQLLSYRRELIGKYKSSVEELVKGEP
Sbjct: 216 HEQLLSYRRELIGKYKSSVEELVKGEP 242

[Close]

BLAST of Cp4.1LG02g14200 vs. ExPASy TrEMBL
Match: A0A6J1GCY0 (mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita moschata OX=3662 GN=LOC111452828 PE=4 SV=1)

HSP 1 Score: 159 bits (402), Expect = 1.06e-46
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 22  NLVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEE 81
           +LVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEE
Sbjct: 156 HLVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEE 215

Query: 82  HEQLLSYRRELIGKYKSSVEELVKGEP 108
           HEQLLSYRRELIGKYKSSVEEL KGEP
Sbjct: 216 HEQLLSYRRELIGKYKSSVEELGKGEP 242

[Close]

BLAST of Cp4.1LG02g14200 vs. ExPASy TrEMBL
Match: A0A1S4DWQ6 (Mediator of RNA polymerase II transcription subunit 9 OS=Cucumis melo OX=3656 GN=LOC103490024 PE=3 SV=1)

HSP 1 Score: 157 bits (396), Expect = 1.33e-45
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 21  LNLVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLE 80
           L+LVEKLADAIE G RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLE
Sbjct: 171 LHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLE 230

Query: 81  EHEQLLSYRRELIGKYKSSVEELVKGEP 108
           EHEQLLS+RRELIGKYK+SVEELVKGEP
Sbjct: 231 EHEQLLSHRRELIGKYKNSVEELVKGEP 258

[Close]

BLAST of Cp4.1LG02g14200 vs. ExPASy TrEMBL
Match: A0A6J1HX54 (Mediator of RNA polymerase II transcription subunit 9 OS=Cucurbita maxima OX=3661 GN=LOC111467667 PE=3 SV=1)

HSP 1 Score: 150 bits (378), Expect = 2.79e-43
Identity = 79/86 (91.86%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 22  NLVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEE 81
           +LVEKLAD IE G RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEE
Sbjct: 139 HLVEKLADTIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEE 198

Query: 82  HEQLLSYRRELIGKYKSSVEELVKGE 107
           HEQLL++RRELIGKYK+SVEELVKGE
Sbjct: 199 HEQLLNHRRELIGKYKNSVEELVKGE 224

[Close]

BLAST of Cp4.1LG02g14200 vs. ExPASy TrEMBL
Match: A0A6J1FZC2 (mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita moschata OX=3662 GN=LOC111449284 PE=4 SV=1)

HSP 1 Score: 150 bits (378), Expect = 4.61e-43
Identity = 79/86 (91.86%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 22  NLVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEE 81
           +LVEKLAD IE G RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEE
Sbjct: 157 HLVEKLADTIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEE 216

Query: 82  HEQLLSYRRELIGKYKSSVEELVKGE 107
           HEQLL++RRELIGKYK+SVEELVKGE
Sbjct: 217 HEQLLNHRRELIGKYKNSVEELVKGE 242

[Close]

BLAST of Cp4.1LG02g14200 vs. TAIR 10
Match: AT1G55080.1 (MED9; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29580.1); Has 67203 Blast hits to 25757 proteins in 1293 species: Archae - 12; Bacteria - 4374; Metazoa - 24340; Fungi - 7940; Plants - 5927; Viruses - 273; Other Eukaryotes - 24337 (source: NCBI BLink). )

HSP 1 Score: 117.5 bits (293), Expect = 6.8e-27
Identity = 59/85 (69.41%), Postives = 71/85 (83.53%), Query Frame = 0


Query: 23  LVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEH 82
           +VEKLAD IE G RDQ SDALVN+LN+HF+KCQQLLNSISGSL SK MTV+GQK+ +EE 
Sbjct: 159 MVEKLADVIENGTRDQNSDALVNELNSHFDKCQQLLNSISGSLGSKTMTVDGQKRNVEES 218

Query: 83  EQLLSYRRELIGKYKSSVEELVKGE 108
           EQLL  RR+LI +Y+ S+EE+V  E
Sbjct: 219 EQLLQQRRDLIVEYRKSIEEIVTME 243

[Close]

BLAST of Cp4.1LG02g14200 vs. TAIR 10
Match: AT1G29580.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55080.1); Has 28 Blast hits to 28 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 2.1e-07
Identity = 37/86 (43.02%), Postives = 42/86 (48.84%), Query Frame = 0


Query: 23  LVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEH 82
           LVE L D  E+  RDQ SDAL  D+                           QK+ LEE 
Sbjct: 31  LVENLKDVTESRARDQNSDALYVDV---------------------------QKQNLEES 89

Query: 83  EQLLSYRRELIGKYKSSVEELVKGEP 109
           EQLL  R ELI +YK SVEE+VK EP
Sbjct: 91  EQLLQQRMELIEEYKKSVEEIVKKEP 89

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g14200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWA2	9.6e-26	69.41	Mediator of RNA polymerase II transcription subunit 9 OS=Arabidopsis thaliana OX...	[more]

BLAST of Cp4.1LG02g14200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023523773.1	1.86e-47	98.85	mediator of RNA polymerase II transcription subunit 9-like [Cucurbita pepo subsp...	[more]
XP_022997827.1	1.91e-47	98.85	mediator of RNA polymerase II transcription subunit 9-like [Cucurbita maxima]	[more]
KAG6606716.1	7.70e-47	97.70	hypothetical protein SDJN03_00058, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022949500.1	2.19e-46	97.70	mediator of RNA polymerase II transcription subunit 9-like [Cucurbita moschata]	[more]
XP_016900408.1	2.76e-45	94.32	PREDICTED: mediator of RNA polymerase II transcription subunit 9, partial [Cucum...	[more]

BLAST of Cp4.1LG02g14200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K651	9.26e-48	98.85	mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita maxima O...	[more]
A0A6J1GCY0	1.06e-46	97.70	mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita moschata...	[more]
A0A1S4DWQ6	1.33e-45	94.32	Mediator of RNA polymerase II transcription subunit 9 OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1HX54	2.79e-43	91.86	Mediator of RNA polymerase II transcription subunit 9 OS=Cucurbita maxima OX=366...	[more]
A0A6J1FZC2	4.61e-43	91.86	mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita moschata...	[more]

BLAST of Cp4.1LG02g14200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55080.1	6.8e-27	69.41	MED9; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G2958...	[more]
AT1G29580.1	2.1e-07	43.02	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011425	Mediator of RNA polymerase II transcription subunit 9	PFAM	PF07544	Med9	coord: 36..100 e-value: 9.8E-7 score: 28.8
IPR038790	Mediator of RNA polymerase II transcription subunit 9, plant	PANTHER	PTHR37188	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT-RELATED	coord: 21..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g14200.1	Cp4.1LG02g14200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity