Cp4.1LG02g13670 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g13670
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Rab5-interacting
Location	Cp4.1LG02: 11072985 .. 11076154 (+)
RNA-Seq Expression	Cp4.1LG02g13670
Synteny	Cp4.1LG02g13670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGACACCCGGTCGGATCCGGATGAACGGTGCATGGAATCTGTGGAATAAACAAAGGCTGCCATGGACAGCAAGCAAAAGTTCTTCACGTTTCCATAAAATTACAATTTCCCATTCCAGATTGAATCGATTTCAAATTTTTATTAAAATAAATCGGAAGAGATCTACAGAAAGCCGTCTCGTTAATTTGTTTATTCCATTCCCCCACTCTCTCATGCTGTTCTTGTTTTTCCAAAACCCTAGCATCTTCTGATCTTTATCTCTAGATTTCAGTTCATACTCCACTGGTTTTCTCGAATTTTCTCTCGATTTCTCGATTTCCGAATAGTCGGCATGAAGGACGGGAAGTCGATTAAGGTTAATTCTCAGTTGCAGCATCAGAATGGTCACTTGCCGCCGTTCAAATTGGCGAATTTGTTCGATCCAGAGGCTTCTTGGGATAAGGTTTTTTTAAAACTCTGCTCTCTTCTGAATTCTGTTACTTCAAGCGAAATGAAGTCTTTGTTGGTTCAAGTTATTGCTTGTTCTGCTGTTGTGAATTTTAGACTATGCATTACCCATGAACGGATCGAGATAGTTTTCCATGATCGTAGTGTCTACTGTTACAAAGATCGAGTGGAAAAGTAGGCATGAATTAGATCATTTTATACTTGGTATCTGAAATCAATTGGTTGGGGAAATTCTTATTAAACTAGCTATGAATTGTTGTCAACGCAGGATCAACTGGGAGATGTCTTGCATTGGATGCGACAGTCGGTTGCGCTTGTATGTGGGCTGCTTTGGGGTTCGGTGCCTCTGGTTGGAGGGATTTGGTTCATCTTGTAAGTTGCCATTTACCTCTTTCGGACACTTGTTTCTGAATGAAACCTCCCTTATTAACACTTACTAATTAAGTCATTACAAGCATTTTAAATTGCTTTCCAAGTGTTATTTTAGAACTGAACATCATGAAAATGTTGAAAATGGTTTAGCTAATCAAGAACACTTTTGGTCTTGAGTTCTGAACACCAGACACACTATTAGTACCTTTGGGGTGTATCTGTTTGTTCCTTCTACCTTCATTAGTAATTCACAGATCCTTTTGACTCAACATCTTGATCTTTTTCAGTAAGTTGGCCAGTTCTTTAAAATGAATTGGTAGAGACATATGTTTACCCTTGATCAAGAGGTCAAAAATTCTAAGCTCCCCACTGCCACATGTTGTTGAACTCAAAAAATGAATCTTTAGTCCAATATGTTAGCATCCCTAATTGCATGACTCCGTGTATTCTCTTAAGAGATAAGACTCAACAACAATAGAAAATTTGACTATCTTGTTGTAACAGCCTAGGTCCACCGCTAGTAGATATTGTCCTCTTTGGGCTTTTTCTTTCGAACTTCCCCTCAAAGTTTTTAAAATGCATCTGCTAGGGATAGGTTTCCACATCCTTACAAAGAATATTTCATTCCCCCTCTCCAACCAATGTGGGATCTCACAATGAGGATGCTGGCCCCAAAGGGGGGTGGATTGTGAGATCTCGTATTGGTTAGAGAGGGAAACGAAGCATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAAACGAGTTCTAAAAACCTTGAGGGGAAGCCCGAAAGGGAAAGTCCAAAGAGAACAATATTGGCTAGTGATGGACATGGGCTCTTACACTTGTACTGTCATTATCTGAACATAGGTTACATATTCATAATGTATTTTTTGAATTCTCTCTGCAAAACATTTCTTTTCTTGTACTTGGAAACTTGAGTTAATTTTATGAACTTGGTCTCATTTTCAGATTCTTGGTGATATCAACCACAATGGTATATGGATACTATGCAATGATTTTGAAAGTAGACGAAGAAGAATTCGGGGGTCATGGTGTCCTCCTCCAGGAAGGGCTTTTTGCTTCCATAACTCTGTTTCTGGTAATCTTATGGCATCTTTTAACACTCCCTCTCTGTCTTCTGATGAATCTTTTGTTAGTTCAAGTGCTCATTTTCCATCTCTTCTCTGTTGTTCAGCTTATGTGGACTCTCGTTTACAGCTTGGGACACTTCTGACAATGGTTTTGTCATCGTTCTTGATATCGAGCGAAGCAATGGTAGGGATGTTATCGCCACTGTTGCTTGCTTTTTTTTTATTAGTGATTGTGCAATAGTTTGCCTTAGAAGGAAGTGTCCACGATGTAGAATTGGATTAATTTCATTAAAATTACAACTTACAAAATTTTAGTAGTTATTATTGATTCTGTTAAACCCAATTCAATCTTCTTCAAAGAATAAATTCTTTAAACAAATGCAGTCGGTTCCTCTTTTTTTCCCTTTATTCTCTGCTACATTAGGTTGATGTTTAAGAATATGGTCGCCATTCAAATCAGTTTATTTTTTTTGGGTCTGCACCCATCCTAAGGCTTGAACATTTGAAGGTTCGTTGTTAAGCTCATGTAAAGATCGAACACACACGACTTCTGGATAGGTGTTAGGGACAGTGCCTTAGGCAACAAGCTGTTCTTGAGGGTGTTAAGTAATTTGATTTTTCTCCTGTAGTTATTTGAATGTAAATGATAACTTATTTTAGACTTGTAAGTTTCTTGGTTTACATATATTCTTCAGAAACAATTGTCAACATTGATATTTAATGATTTTAGAGAATATGATTAAAAAGTTGGAAGATGCAAGAAATCTGAATGTCTAATCACATGGATTTAGAAACTTAGAAGGCACGATGAGAATATTATAAGTTTCCTACAATTTTCCAATTGTTTATGACCAACTATCAGTTCTTGGGCTGGGAGATAAAAGATTACAAATTGAATATGCAAACCACATTGGATGAAGATGATGAAAGATTATGAACTACTGGCAGCAGCTAACTTGATTTGTAATCACCAAGAATCATGTGGTGGAATATAGACAAGTTGCTCTTACGTCTGGAGTTGACATCCTACAGCTATCTTTGGCGCCTTCTTTTACCCCTTACGAAGTAGATGCGCCCATAAACCCATTGTCGACCTTGTCTTGAGCTCGATTTCTGCACAATACCAACCTCAGAGATTAAGCGTCTTTCTCTTCAGACGTTTCTTGGTAGCAAATGTAAACCAGAAGCAGATAGGAGTATTAGTTTTATAGCCACCGGAGTGTTAATTGACTAAAAATTTCAGGGATGAAAATCC

mRNA sequence

CGACACCCGGTCGGATCCGGATGAACGGTGCATGGAATCTGTGGAATAAACAAAGGCTGCCATGGACAGCAAGCAAAAGTTCTTCACGTTTCCATAAAATTACAATTTCCCATTCCAGATTGAATCGATTTCAAATTTTTATTAAAATAAATCGGAAGAGATCTACAGAAAGCCGTCTCGTTAATTTGTTTATTCCATTCCCCCACTCTCTCATGCTGTTCTTGTTTTTCCAAAACCCTAGCATCTTCTGATCTTTATCTCTAGATTTCAGTTCATACTCCACTGGTTTTCTCGAATTTTCTCTCGATTTCTCGATTTCCGAATAGTCGGCATGAAGGACGGGAAGTCGATTAAGGTTAATTCTCAGTTGCAGCATCAGAATGGTCACTTGCCGCCGTTCAAATTGGCGAATTTGTTCGATCCAGAGGCTTCTTGGGATAAGGATCAACTGGGAGATGTCTTGCATTGGATGCGACAGTCGGTTGCGCTTGTATGTGGGCTGCTTTGGGGTTCGGTGCCTCTGGTTGGAGGGATTTGGTTCATCTTATTCTTGGTGATATCAACCACAATGGTATATGGATACTATGCAATGATTTTGAAAGTAGACGAAGAAGAATTCGGGGGTCATGGTGTCCTCCTCCAGGAAGGGCTTTTTGCTTCCATAACTCTGTTTCTGCTTATGTGGACTCTCGTTTACAGCTTGGGACACTTCTGACAATGGTTTTGTCATCGTTCTTGATATCGAGCGAAGCAATGGTAGGGATGTTATCGCCACTGTTGCTTGCTTTTTTTTTATTAGTGATTGTGCAATAGTTTGCCTTAGAAGGAAGTGTCCACGATGTAGAATTGGATTAATTTCATTAAAATTACAACTTACAAAATTTTAGTAGTTATTATTGATTCTGTTAAACCCAATTCAATCTTCTTCAAAGAATAAATTCTTTAAACAAATGCAGTCGGTTCCTCTTTTTTTCCCTTTATTCTCTGCTACATTAGGTTGATGTTTAAGAATATGGTCGCCATTCAAATCAGTTTATTTTTTTTGGGTCTGCACCCATCCTAAGGCTTGAACATTTGAAGGTTCGTTGTTAAGCTCATGTAAAGATCGAACACACACGACTTCTGGATAGGTGTTAGGGACAGTGCCTTAGGCAACAAGCTGTTCTTGAGGGTGTTAAGTAATTTGATTTTTCTCCTGTAGTTATTTGAATGTAAATGATAACTTATTTTAGACTTGTAAGTTTCTTGGTTTACATATATTCTTCAGAAACAATTGTCAACATTGATATTTAATGATTTTAGAGAATATGATTAAAAAGTTGGAAGATGCAAGAAATCTGAATGTCTAATCACATGGATTTAGAAACTTAGAAGGCACGATGAGAATATTATAAGTTTCCTACAATTTTCCAATTGTTTATGACCAACTATCAGTTCTTGGGCTGGGAGATAAAAGATTACAAATTGAATATGCAAACCACATTGGATGAAGATGATGAAAGATTATGAACTACTGGCAGCAGCTAACTTGATTTGTAATCACCAAGAATCATGTGGTGGAATATAGACAAGTTGCTCTTACGTCTGGAGTTGACATCCTACAGCTATCTTTGGCGCCTTCTTTTACCCCTTACGAAGTAGATGCGCCCATAAACCCATTGTCGACCTTGTCTTGAGCTCGATTTCTGCACAATACCAACCTCAGAGATTAAGCGTCTTTCTCTTCAGACGTTTCTTGGTAGCAAATGTAAACCAGAAGCAGATAGGAGTATTAGTTTTATAGCCACCGGAGTGTTAATTGACTAAAAATTTCAGGGATGAAAATCC

Coding sequence (CDS)

ATGAAGGACGGGAAGTCGATTAAGGTTAATTCTCAGTTGCAGCATCAGAATGGTCACTTGCCGCCGTTCAAATTGGCGAATTTGTTCGATCCAGAGGCTTCTTGGGATAAGGATCAACTGGGAGATGTCTTGCATTGGATGCGACAGTCGGTTGCGCTTGTATGTGGGCTGCTTTGGGGTTCGGTGCCTCTGGTTGGAGGGATTTGGTTCATCTTATTCTTGGTGATATCAACCACAATGGTATATGGATACTATGCAATGATTTTGAAAGTAGACGAAGAAGAATTCGGGGGTCATGGTGTCCTCCTCCAGGAAGGGCTTTTTGCTTCCATAACTCTGTTTCTGCTTATGTGGACTCTCGTTTACAGCTTGGGACACTTCTGA

Protein sequence

MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTLVYSLGHF

Homology

[Close]

BLAST of Cp4.1LG02g13670 vs. ExPASy Swiss-Prot
Match: Q9CQT9 (Respirasome Complex Assembly Factor 1 OS=Mus musculus OX=10090 GN=Rab5if PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.3e-17
Identity = 46/128 (35.94%), Postives = 76/128 (59.38%), Query Frame = 0


Query: 1   MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASW-DKDQLGDVLHWMRQSVALVCGLLW 60
           M  G+  +   Q Q  NG L     + +   +A+W DKD+  DV++W RQ +ALV G++W
Sbjct: 1   MSGGRRKEEPPQPQLANGALKVSVWSKVLRSDAAWDDKDEFLDVIYWFRQIIALVLGVIW 60

Query: 61  GSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWT 120
           G +PL G +    F +I+  ++Y Y++  L++DEEE+GG   L +EG   S  LF+++W 
Sbjct: 61  GVLPLRGFLGIAGFCLINAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMVIWI 120

Query: 121 LVYSLGHF 128
           + Y+  H+
Sbjct: 121 IFYTAIHY 128

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BLAST of Cp4.1LG02g13670 vs. ExPASy Swiss-Prot
Match: Q9BUV8 (Respirasome Complex Assembly Factor 1 OS=Homo sapiens OX=9606 GN=RAB5IF PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-14
Identity = 44/127 (34.65%), Postives = 73/127 (57.48%), Query Frame = 0


Query: 1   MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASW-DKDQLGDVLHWMRQSVALVCGLLW 60
           M  G+  +   Q Q  NG L     + +   +A+W DKD+  DV++W RQ +A+V G++W
Sbjct: 1   MSGGRRKEEPPQPQLANGALKVSVWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIW 60

Query: 61  GSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWT 120
           G +PL G +    F +I+  ++Y Y++  L++DEEE+GG   L +EG   S  LF++   
Sbjct: 61  GVLPLRGFLGIAGFCLINAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMVCVA 120

Query: 121 LVYSLGH 127
             ++ GH
Sbjct: 121 DSFTTGH 127

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BLAST of Cp4.1LG02g13670 vs. NCBI nr
Match: XP_022948613.1 (uncharacterized protein C20orf24 homolog [Cucurbita moschata] >XP_023523192.1 uncharacterized protein C20orf24 homolog [Cucurbita pepo subsp. pepo] >KAG6607251.1 Respirasome Complex Assembly Factor 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036935.1 hypothetical protein SDJN02_00555 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 259 bits (663), Expect = 2.38e-87
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWG 60
           MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWG
Sbjct: 1   MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWG 60

Query: 61  SVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120
           SVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL
Sbjct: 61  SVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120

Query: 121 VYSLGHF 127
           VYSLGHF
Sbjct: 121 VYSLGHF 127

[Close]

BLAST of Cp4.1LG02g13670 vs. NCBI nr
Match: XP_022998338.1 (uncharacterized protein C20orf24 homolog [Cucurbita maxima])

HSP 1 Score: 258 bits (660), Expect = 6.83e-87
Identity = 126/127 (99.21%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWG 60
           MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWG
Sbjct: 1   MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWG 60

Query: 61  SVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120
           SVPLVGGIWFI+FLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL
Sbjct: 61  SVPLVGGIWFIVFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120

Query: 121 VYSLGHF 127
           VYSLGHF
Sbjct: 121 VYSLGHF 127

[Close]

BLAST of Cp4.1LG02g13670 vs. NCBI nr
Match: XP_038895585.1 (respirasome Complex Assembly Factor 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 253 bits (646), Expect = 9.34e-85
Identity = 122/127 (96.06%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 1   MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWG 60
           MKDGKS KVNSQLQHQNGHLPPFKLA LFDPE SWDKDQLGDVLHWMRQSVALVCGLLWG
Sbjct: 1   MKDGKSTKVNSQLQHQNGHLPPFKLAKLFDPETSWDKDQLGDVLHWMRQSVALVCGLLWG 60

Query: 61  SVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120
           S+PLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL
Sbjct: 61  SIPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120

Query: 121 VYSLGHF 127
           +YSLGHF
Sbjct: 121 IYSLGHF 127

[Close]

BLAST of Cp4.1LG02g13670 vs. NCBI nr
Match: XP_008457469.1 (PREDICTED: uncharacterized protein C20orf24 homolog [Cucumis melo])

HSP 1 Score: 252 bits (643), Expect = 2.68e-84
Identity = 119/127 (93.70%), Postives = 125/127 (98.43%), Query Frame = 0


Query: 1   MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWG 60
           MKDGK++KVNSQLQHQNGHLPPFKLA LFDPE SWDKDQLGDVLHWMRQSVALVCGLLWG
Sbjct: 1   MKDGKTMKVNSQLQHQNGHLPPFKLARLFDPETSWDKDQLGDVLHWMRQSVALVCGLLWG 60

Query: 61  SVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120
           S+PLVGGIWFILFLVISTTM+YGYYAMILKVDEEEFGGHGVLLQEGLFAS+TLFLLMWTL
Sbjct: 61  SIPLVGGIWFILFLVISTTMIYGYYAMILKVDEEEFGGHGVLLQEGLFASVTLFLLMWTL 120

Query: 121 VYSLGHF 127
           +YSLGHF
Sbjct: 121 IYSLGHF 127

[Close]

BLAST of Cp4.1LG02g13670 vs. NCBI nr
Match: XP_004145291.1 (uncharacterized protein RAB5IF homolog [Cucumis sativus] >KGN65732.1 hypothetical protein Csa_019550 [Cucumis sativus])

HSP 1 Score: 245 bits (626), Expect = 1.02e-81
Identity = 119/127 (93.70%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 1   MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWG 60
           MKDGKS+KVNSQLQ QNGHLPPFKLA LFDPE SWDKDQLGDVLHWMRQSVALVCGLLWG
Sbjct: 1   MKDGKSMKVNSQLQ-QNGHLPPFKLAKLFDPETSWDKDQLGDVLHWMRQSVALVCGLLWG 60

Query: 61  SVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120
           S+PLVGG+WFILFLVISTTM+YGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL
Sbjct: 61  SIPLVGGVWFILFLVISTTMIYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120

Query: 121 VYSLGHF 127
           +YSLGHF
Sbjct: 121 IYSLGHF 126

[Close]

BLAST of Cp4.1LG02g13670 vs. ExPASy TrEMBL
Match: A0A6J1G9S8 (uncharacterized protein C20orf24 homolog OS=Cucurbita moschata OX=3662 GN=LOC111452238 PE=4 SV=1)

HSP 1 Score: 259 bits (663), Expect = 1.15e-87
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWG 60
           MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWG
Sbjct: 1   MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWG 60

Query: 61  SVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120
           SVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL
Sbjct: 61  SVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120

Query: 121 VYSLGHF 127
           VYSLGHF
Sbjct: 121 VYSLGHF 127

[Close]

BLAST of Cp4.1LG02g13670 vs. ExPASy TrEMBL
Match: A0A6J1KGG2 (uncharacterized protein C20orf24 homolog OS=Cucurbita maxima OX=3661 GN=LOC111493006 PE=4 SV=1)

HSP 1 Score: 258 bits (660), Expect = 3.31e-87
Identity = 126/127 (99.21%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWG 60
           MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWG
Sbjct: 1   MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWG 60

Query: 61  SVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120
           SVPLVGGIWFI+FLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL
Sbjct: 61  SVPLVGGIWFIVFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120

Query: 121 VYSLGHF 127
           VYSLGHF
Sbjct: 121 VYSLGHF 127

[Close]

BLAST of Cp4.1LG02g13670 vs. ExPASy TrEMBL
Match: A0A1S3C692 (uncharacterized protein C20orf24 homolog OS=Cucumis melo OX=3656 GN=LOC103497150 PE=4 SV=1)

HSP 1 Score: 252 bits (643), Expect = 1.30e-84
Identity = 119/127 (93.70%), Postives = 125/127 (98.43%), Query Frame = 0


Query: 1   MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWG 60
           MKDGK++KVNSQLQHQNGHLPPFKLA LFDPE SWDKDQLGDVLHWMRQSVALVCGLLWG
Sbjct: 1   MKDGKTMKVNSQLQHQNGHLPPFKLARLFDPETSWDKDQLGDVLHWMRQSVALVCGLLWG 60

Query: 61  SVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120
           S+PLVGGIWFILFLVISTTM+YGYYAMILKVDEEEFGGHGVLLQEGLFAS+TLFLLMWTL
Sbjct: 61  SIPLVGGIWFILFLVISTTMIYGYYAMILKVDEEEFGGHGVLLQEGLFASVTLFLLMWTL 120

Query: 121 VYSLGHF 127
           +YSLGHF
Sbjct: 121 IYSLGHF 127

[Close]

BLAST of Cp4.1LG02g13670 vs. ExPASy TrEMBL
Match: A0A0A0LY22 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G523070 PE=4 SV=1)

HSP 1 Score: 245 bits (626), Expect = 4.92e-82
Identity = 119/127 (93.70%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 1   MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWG 60
           MKDGKS+KVNSQLQ QNGHLPPFKLA LFDPE SWDKDQLGDVLHWMRQSVALVCGLLWG
Sbjct: 1   MKDGKSMKVNSQLQ-QNGHLPPFKLAKLFDPETSWDKDQLGDVLHWMRQSVALVCGLLWG 60

Query: 61  SVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120
           S+PLVGG+WFILFLVISTTM+YGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL
Sbjct: 61  SIPLVGGVWFILFLVISTTMIYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120

Query: 121 VYSLGHF 127
           +YSLGHF
Sbjct: 121 IYSLGHF 126

[Close]

BLAST of Cp4.1LG02g13670 vs. ExPASy TrEMBL
Match: A0A5A7VQ84 (Rab5-interacting OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002120 PE=4 SV=1)

HSP 1 Score: 229 bits (584), Expect = 3.28e-75
Identity = 109/116 (93.97%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWG 60
           MKDGK++KVNSQLQHQNGHLPPFKLA LFDPE SWDKDQLGDVLHWMRQSVALVCGLLWG
Sbjct: 1   MKDGKTMKVNSQLQHQNGHLPPFKLARLFDPETSWDKDQLGDVLHWMRQSVALVCGLLWG 60

Query: 61  SVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLL 116
           S+PLVGGIWFILFLVISTTM+YGYYAMILKVDEEEFGGHGVLLQEGLFAS+TLFLL
Sbjct: 61  SIPLVGGIWFILFLVISTTMIYGYYAMILKVDEEEFGGHGVLLQEGLFASVTLFLL 116

[Close]

BLAST of Cp4.1LG02g13670 vs. TAIR 10
Match: AT5G59410.1 (Rab5-interacting family protein )

HSP 1 Score: 199.9 bits (507), Expect = 1.2e-51
Identity = 97/130 (74.62%), Postives = 107/130 (82.31%), Query Frame = 0


Query: 1   MKDGKSIKVN---SQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGL 60
           MK+ KS K+N    Q  HQN HL P KLA LFDP+ASWDKDQLGDVLHW+RQ V L+ GL
Sbjct: 1   MKESKSAKLNQLQQQENHQNAHLSPSKLAKLFDPDASWDKDQLGDVLHWIRQVVGLISGL 60

Query: 61  LWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLM 120
           LWGS+PLVGGIW ILFL IS+ +VYGYYAMILKVDEE+FGGH  LLQEGLFAS+TLFLL 
Sbjct: 61  LWGSIPLVGGIWIILFLAISSGIVYGYYAMILKVDEEDFGGHAALLQEGLFASLTLFLLA 120

Query: 121 WTLVYSLGHF 128
           W LVYSL HF
Sbjct: 121 WILVYSLAHF 130

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BLAST of Cp4.1LG02g13670 vs. TAIR 10
Match: AT2G29020.1 (Rab5-interacting family protein )

HSP 1 Score: 188.0 bits (476), Expect = 4.8e-48
Identity = 89/133 (66.92%), Postives = 106/133 (79.70%), Query Frame = 0


Query: 1   MKDGKSIKVNS------QLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALV 60
           MK+GKS K +S      Q+ HQN HL  F  A LFD EASWDKDQLGDVLHW+RQ V L+
Sbjct: 1   MKEGKSSKSSSQQEQHEQIYHQNSHLGSFNFAKLFDSEASWDKDQLGDVLHWIRQVVGLL 60

Query: 61  CGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLF 120
           CGLLWG++PLVGGIW +LFL IS+ +VYGYYA++LK+DEE+FGGH  LLQ+GLFAS++LF
Sbjct: 61  CGLLWGAIPLVGGIWLLLFLAISSGIVYGYYALVLKIDEEDFGGHAALLQDGLFASLSLF 120

Query: 121 LLMWTLVYSLGHF 128
           LL W LVYSL  F
Sbjct: 121 LLAWILVYSLSSF 133

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g13670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CQT9	4.3e-17	35.94	Respirasome Complex Assembly Factor 1 OS=Mus musculus OX=10090 GN=Rab5if PE=1 SV...	[more]
Q9BUV8	1.2e-14	34.65	Respirasome Complex Assembly Factor 1 OS=Homo sapiens OX=9606 GN=RAB5IF PE=1 SV=...	[more]

BLAST of Cp4.1LG02g13670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948613.1	2.38e-87	100.00	uncharacterized protein C20orf24 homolog [Cucurbita moschata] >XP_023523192.1 un...	[more]
XP_022998338.1	6.83e-87	99.21	uncharacterized protein C20orf24 homolog [Cucurbita maxima]	[more]
XP_038895585.1	9.34e-85	96.06	respirasome Complex Assembly Factor 1-like isoform X2 [Benincasa hispida]	[more]
XP_008457469.1	2.68e-84	93.70	PREDICTED: uncharacterized protein C20orf24 homolog [Cucumis melo]	[more]
XP_004145291.1	1.02e-81	93.70	uncharacterized protein RAB5IF homolog [Cucumis sativus] >KGN65732.1 hypothetica...	[more]

BLAST of Cp4.1LG02g13670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G9S8	1.15e-87	100.00	uncharacterized protein C20orf24 homolog OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1KGG2	3.31e-87	99.21	uncharacterized protein C20orf24 homolog OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A1S3C692	1.30e-84	93.70	uncharacterized protein C20orf24 homolog OS=Cucumis melo OX=3656 GN=LOC103497150...	[more]
A0A0A0LY22	4.92e-82	93.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G523070 PE=4 SV=1	[more]
A0A5A7VQ84	3.28e-75	93.97	Rab5-interacting OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002...	[more]

BLAST of Cp4.1LG02g13670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59410.1	1.2e-51	74.62	Rab5-interacting family protein	[more]
AT2G29020.1	4.8e-48	66.92	Rab5-interacting family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029008	Rab5-interacting protein family	PFAM	PF07019	Rab5ip	coord: 43..122 e-value: 8.5E-14 score: 51.9
None	No IPR available	PANTHER	PTHR12906:SF2	BNAA04G16800D PROTEIN	coord: 1..127
IPR010742	Rab5-interacting protein	PANTHER	PTHR12906	PROTEIN C20ORF24 RAB5-INTERACTING PROTEIN	coord: 1..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g13670.1	Cp4.1LG02g13670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006996	organelle organization
cellular_component	GO:0016021	integral component of membrane