Cp4.1LG02g13230 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG02g13230
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionDDE Tnp4 domain-containing protein
LocationCp4.1LG02: 11340032 .. 11340537 (+)
RNA-Seq ExpressionCp4.1LG02g13230
SyntenyCp4.1LG02g13230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCCAATCAGAGGGTCGAGAAAGAAGAAGAAATTAGAGAGAAAGCTCGATGCCAATGCCAGTACTGCTTCAGATTCCTCTGAAAAGGACGACGCCCTTGATTGGTGGGACGATTTCTCTAGAAGAACCATTGGTATTTTGTTTCTATCTTTTCCTTTTAATTTCTTGATTTCTTCCCGAGTTCTTGCTCGATGCATTTGGGCGCAATAACATACCCATCGGTTCTGTTTACAAGATTTTCCTCTAATCATTTAACCTTTTGAAACAACTGATTTGAACTCGGTTGACTTACGTTGACACTGCCGCTTGCGTAGGGTAGTTTACTGATTCTGCTACTTTGATTGTGTAAAGACGCATGAACTCGTGTTTATCGTTTGTATGCATCGATGAGTTTCTGTGGTGATTCTGTTTCAGGATTTGGATCTGTTTTCTGTGATGCTAATGCTTGGGATTTGAAACGAGGCCTTGTGTGTGAGTTTGATGTGTTAGTGTTGAATTTATGA

mRNA sequence

ATGGGTCCAATCAGAGGGTCGAGAAAGAAGAAGAAATTAGAGAGAAAGCTCGATGCCAATGCCAGTACTGCTTCAGATTCCTCTGAAAAGGACGACGCCCTTGATTGGTGGGACGATTTCTCTAGAAGAACCATTGGATTTGGATCTGTTTTCTGTGATGCTAATGCTTGGGATTTGAAACGAGGCCTTGTGTGTGAGTTTGATGTGTTAGTGTTGAATTTATGA

Coding sequence (CDS)

ATGGGTCCAATCAGAGGGTCGAGAAAGAAGAAGAAATTAGAGAGAAAGCTCGATGCCAATGCCAGTACTGCTTCAGATTCCTCTGAAAAGGACGACGCCCTTGATTGGTGGGACGATTTCTCTAGAAGAACCATTGGATTTGGATCTGTTTTCTGTGATGCTAATGCTTGGGATTTGAAACGAGGCCTTGTGTGTGAGTTTGATGTGTTAGTGTTGAATTTATGA

Protein sequence

MGPIRGSRKKKKLERKLDANASTASDSSEKDDALDWWDDFSRRTIGFGSVFCDANAWDLKRGLVCEFDVLVLNL
Homology
BLAST of Cp4.1LG02g13230 vs. NCBI nr
Match: XP_023523098.1 (protein ALP1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023523103.1 protein ALP1-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023523108.1 protein ALP1-like isoform X3 [Cucurbita pepo subsp. pepo] >XP_023523112.1 protein ALP1-like isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 95.9 bits (237), Expect = 2.81e-21
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 0

Query: 1  MGPIRGSRKKKKLERKLDANASTASDSSEKDDALDWWDDFSRRTIGFGS 49
          MGPIRGSRKKKKLERKLDANASTASDSSEKDDALDWWDDFSRRTIGF S
Sbjct: 1  MGPIRGSRKKKKLERKLDANASTASDSSEKDDALDWWDDFSRRTIGFHS 49

BLAST of Cp4.1LG02g13230 vs. NCBI nr
Match: KAG6607212.1 (Protein ALP1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 93.6 bits (231), Expect = 2.00e-20
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 0

Query: 1  MGPIRGSRKKKKLERKLDANASTASDSSEKDDALDWWDDFSRRTIGFGS 49
          MGPIRGSRKKKKLERKLDANASTASDSSEKDDALDWWDDFSRRTIG  S
Sbjct: 1  MGPIRGSRKKKKLERKLDANASTASDSSEKDDALDWWDDFSRRTIGLHS 49

BLAST of Cp4.1LG02g13230 vs. NCBI nr
Match: KAG7036897.1 (Protein ALP1-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 93.6 bits (231), Expect = 2.00e-20
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 0

Query: 1  MGPIRGSRKKKKLERKLDANASTASDSSEKDDALDWWDDFSRRTIGFGS 49
          MGPIRGSRKKKKLERKLDANASTASDSSEKDDALDWWDDFSRRTIG  S
Sbjct: 1  MGPIRGSRKKKKLERKLDANASTASDSSEKDDALDWWDDFSRRTIGLHS 49

BLAST of Cp4.1LG02g13230 vs. NCBI nr
Match: XP_022948999.1 (protein ALP1-like [Cucurbita moschata])

HSP 1 Score: 93.6 bits (231), Expect = 2.00e-20
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 0

Query: 1  MGPIRGSRKKKKLERKLDANASTASDSSEKDDALDWWDDFSRRTIGFGS 49
          MGPIRGSRKKKKLERKLDANASTASDSSEKDDALDWWDDFSRRTIG  S
Sbjct: 1  MGPIRGSRKKKKLERKLDANASTASDSSEKDDALDWWDDFSRRTIGLHS 49

BLAST of Cp4.1LG02g13230 vs. NCBI nr
Match: XP_022997817.1 (protein ALP1-like [Cucurbita maxima])

HSP 1 Score: 93.6 bits (231), Expect = 2.00e-20
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 0

Query: 1  MGPIRGSRKKKKLERKLDANASTASDSSEKDDALDWWDDFSRRTIGFGS 49
          MGPIRGSRKKKKLERKLDANASTASDSSEKDDALDWWDDFSRRTIG  S
Sbjct: 1  MGPIRGSRKKKKLERKLDANASTASDSSEKDDALDWWDDFSRRTIGLHS 49

BLAST of Cp4.1LG02g13230 vs. ExPASy TrEMBL
Match: A0A6J1K643 (protein ALP1-like OS=Cucurbita maxima OX=3661 GN=LOC111492660 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 9.70e-21
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 0

Query: 1  MGPIRGSRKKKKLERKLDANASTASDSSEKDDALDWWDDFSRRTIGFGS 49
          MGPIRGSRKKKKLERKLDANASTASDSSEKDDALDWWDDFSRRTIG  S
Sbjct: 1  MGPIRGSRKKKKLERKLDANASTASDSSEKDDALDWWDDFSRRTIGLHS 49

BLAST of Cp4.1LG02g13230 vs. ExPASy TrEMBL
Match: A0A6J1GBJ6 (protein ALP1-like OS=Cucurbita moschata OX=3662 GN=LOC111452471 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 9.70e-21
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 0

Query: 1  MGPIRGSRKKKKLERKLDANASTASDSSEKDDALDWWDDFSRRTIGFGS 49
          MGPIRGSRKKKKLERKLDANASTASDSSEKDDALDWWDDFSRRTIG  S
Sbjct: 1  MGPIRGSRKKKKLERKLDANASTASDSSEKDDALDWWDDFSRRTIGLHS 49

BLAST of Cp4.1LG02g13230 vs. ExPASy TrEMBL
Match: A0A5A7VJS1 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001450 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.07e-15
Identity = 47/90 (52.22%), Postives = 55/90 (61.11%), Query Frame = 0

Query: 1  MGPIRGSRKKKKLERKLDANASTASDSSEKDDALDWWDDFSRRT---------------- 60
          MGPIRG RKKKKLERKL++N  TASDSS+KDDA+DWWDDFS+RT                
Sbjct: 1  MGPIRGLRKKKKLERKLNSNG-TASDSSKKDDAIDWWDDFSKRTNERIDGTTCIGRFDNY 60

Query: 61 IGFGSVFCDANAWDLKRGLVCEFDVLVLNL 74
          + F S++       L RG    FD LV NL
Sbjct: 61 VSFESLYRK-----LDRGSRFGFDALVFNL 84

BLAST of Cp4.1LG02g13230 vs. ExPASy TrEMBL
Match: A0A5A7SXL0 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43059G001000 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 5.53e-15
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 0

Query: 1  MGPIRGSRKKKKLERKLDANASTASDSSEKDDALDWWDDFSRRTIGFGS 49
          MGPIRG RKKKKLERKLD+N  TASDSSEKDDA+DWWDDFS+RT G  S
Sbjct: 1  MGPIRGLRKKKKLERKLDSNG-TASDSSEKDDAIDWWDDFSKRTNGLHS 48

BLAST of Cp4.1LG02g13230 vs. ExPASy TrEMBL
Match: A0A5D3BNB9 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00830 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 5.53e-15
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 0

Query: 1  MGPIRGSRKKKKLERKLDANASTASDSSEKDDALDWWDDFSRRTIGFGS 49
          MGPIRG RKKKKLERKLD+N  TASDSSEKDDA+DWWDDFS+RT G  S
Sbjct: 1  MGPIRGLRKKKKLERKLDSNG-TASDSSEKDDAIDWWDDFSKRTNGLHS 48

BLAST of Cp4.1LG02g13230 vs. TAIR 10
Match: AT3G55350.1 (PIF / Ping-Pong family of plant transposases )

HSP 1 Score: 41.6 bits (96), Expect = 3.2e-04
Identity = 25/64 (39.06%), Postives = 37/64 (57.81%), Query Frame = 0

Query: 1  MGPIRGSRKKKKLERKLD-------------ANASTASDSSEKDD-----ALDWWDDFSR 47
          MGPI+  +KKK+ E+K+D             A+A+ A ++++ DD     +LDWWD FSR
Sbjct: 1  MGPIKTIKKKKRAEKKVDRNVLLAATAAATSASAAAALNNNDDDDDSSSQSLDWWDGFSR 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_023523098.12.81e-2197.96protein ALP1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023523103.1 protei... [more]
KAG6607212.12.00e-2095.92Protein ALP1-like protein, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7036897.12.00e-2095.92Protein ALP1-like protein [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022948999.12.00e-2095.92protein ALP1-like [Cucurbita moschata][more]
XP_022997817.12.00e-2095.92protein ALP1-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
A0A6J1K6439.70e-2195.92protein ALP1-like OS=Cucurbita maxima OX=3661 GN=LOC111492660 PE=3 SV=1[more]
A0A6J1GBJ69.70e-2195.92protein ALP1-like OS=Cucurbita moschata OX=3662 GN=LOC111452471 PE=3 SV=1[more]
A0A5A7VJS11.07e-1552.22Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7SXL05.53e-1581.63Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A5D3BNB95.53e-1581.63Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
Match NameE-valueIdentityDescription
AT3G55350.13.2e-0439.06PIF / Ping-Pong family of plant transposases [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availablePANTHERPTHR22930:SF194NUCLEASE HARBI1 ISOFORM X1-RELATEDcoord: 1..49
NoneNo IPR availablePANTHERPTHR22930UNCHARACTERIZEDcoord: 1..49

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g13230.1Cp4.1LG02g13230.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding