Cp4.1LG02g13080 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g13080
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	zinc finger protein CONSTANS-LIKE 4-like
Location	Cp4.1LG02: 11283989 .. 11284689 (-)
RNA-Seq Expression	Cp4.1LG02g13080
Synteny	Cp4.1LG02g13080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACAGTCACTCAGCCGCCACCGCAGATGCCTCCCTGAGCCACCTCCAACCGCCGCCACCTTTCCCGTCGTTCTCAAATTTGATATGTTCCCACAACCCTTTCCCAATGGTAGAGGCATTGGAGGTTAGTTATAGTGGGAGTAGTAGTGGAGGTTGTAGTTATAGTAGCTACGGGTCTCCAACATCGCACCCTGGGCTAAGCCATGCTCCAACCTCTCGCCGACCACTCACAAGGGCTTACAGCTCCGGCCATAATGAGAGAAGAGGCGAAGAGAGGACATGGTCCAGTGAAAGCAGTATGATAATTGAAGGAATGAGAAGAGCTTCTCCATATACTCCCCAAGAGAAGAGACACAGAATTGAAAGATACAAAATCAAGAGAAACCAAAGGAATTTTAATAAGAAGATTAAGGTAATTAATTATTATTATTATTTTTTTTTTTTAATTTTATGTATATAAAATGTTAAAAGTTTGAATTTTTATTAGTCCCGAAAATTTGGCAGTATGAATGTAGGAAGACACTGGCAGATAGTAGAAAGCGCATACGAGGGAGATTTGCGAGAAATGAAGAAGCTGAGAATAGTAACTCGACTAGCTCGCCAGTCGAGACATGGAGCTGCTATGACAATGCCATGCCCGAGGACGATGCCTCTTGGACAACCTTTCTTGATTCTTACTCTCTAAACTTCGTTCCTTGA

mRNA sequence

ATGCACAGTCACTCAGCCGCCACCGCAGATGCCTCCCTGAGCCACCTCCAACCGCCGCCACCTTTCCCGTCGTTCTCAAATTTGATATGTTCCCACAACCCTTTCCCAATGGTAGAGGCATTGGAGGTTAGTTATAGTGGGAGTAGTAGTGGAGGTTGTAGTTATAGTAGCTACGGGTCTCCAACATCGCACCCTGGGCTAAGCCATGCTCCAACCTCTCGCCGACCACTCACAAGGGCTTACAGCTCCGGCCATAATGAGAGAAGAGGCGAAGAGAGGACATGGTCCAGTGAAAGCAGTATGATAATTGAAGGAATGAGAAGAGCTTCTCCATATACTCCCCAAGAGAAGAGACACAGAATTGAAAGATACAAAATCAAGAGAAACCAAAGGAATTTTAATAAGAAGATTAAGTATGAATGTAGGAAGACACTGGCAGATAGTAGAAAGCGCATACGAGGGAGATTTGCGAGAAATGAAGAAGCTGAGAATAGTAACTCGACTAGCTCGCCAGTCGAGACATGGAGCTGCTATGACAATGCCATGCCCGAGGACGATGCCTCTTGGACAACCTTTCTTGATTCTTACTCTCTAAACTTCGTTCCTTGA

Coding sequence (CDS)

ATGCACAGTCACTCAGCCGCCACCGCAGATGCCTCCCTGAGCCACCTCCAACCGCCGCCACCTTTCCCGTCGTTCTCAAATTTGATATGTTCCCACAACCCTTTCCCAATGGTAGAGGCATTGGAGGTTAGTTATAGTGGGAGTAGTAGTGGAGGTTGTAGTTATAGTAGCTACGGGTCTCCAACATCGCACCCTGGGCTAAGCCATGCTCCAACCTCTCGCCGACCACTCACAAGGGCTTACAGCTCCGGCCATAATGAGAGAAGAGGCGAAGAGAGGACATGGTCCAGTGAAAGCAGTATGATAATTGAAGGAATGAGAAGAGCTTCTCCATATACTCCCCAAGAGAAGAGACACAGAATTGAAAGATACAAAATCAAGAGAAACCAAAGGAATTTTAATAAGAAGATTAAGTATGAATGTAGGAAGACACTGGCAGATAGTAGAAAGCGCATACGAGGGAGATTTGCGAGAAATGAAGAAGCTGAGAATAGTAACTCGACTAGCTCGCCAGTCGAGACATGGAGCTGCTATGACAATGCCATGCCCGAGGACGATGCCTCTTGGACAACCTTTCTTGATTCTTACTCTCTAAACTTCGTTCCTTGA

Protein sequence

MHSHSAATADASLSHLQPPPPFPSFSNLICSHNPFPMVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHAPTSRRPLTRAYSSGHNERRGEERTWSSESSMIIEGMRRASPYTPQEKRHRIERYKIKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMPEDDASWTTFLDSYSLNFVP

Homology

[Close]

BLAST of Cp4.1LG02g13080 vs. ExPASy Swiss-Prot
Match: Q940T9 (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 2.7e-05
Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 0


Query: 105 GMRRASPYTPQEKRHRIERYKIKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAEN 164
           G +RA P T  E+  R+ RY+ KR  R F K I+Y  RK  A+ R RI+GRFA+  +   
Sbjct: 283 GTQRAVPLTSAEREARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDTNE 342

Query: 165 SN 167
           SN
Sbjct: 343 SN 344

[Close]

BLAST of Cp4.1LG02g13080 vs. NCBI nr
Match: KAG6607222.1 (Zinc finger protein CONSTANS-LIKE 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 386 bits (991), Expect = 6.60e-135
Identity = 195/202 (96.53%), Postives = 196/202 (97.03%), Query Frame = 0


Query: 1   MHSHSAATADASLSHLQPPPPFPSFSNLICSHNPFPMVEALEVSYSGSSSGGCSYSSYGS 60
           MHSHSAATADASLSHLQPPPPFPSFSNLI SHNPFPMVEALEVSYSGSSSGGCSYSSYGS
Sbjct: 1   MHSHSAATADASLSHLQPPPPFPSFSNLIYSHNPFPMVEALEVSYSGSSSGGCSYSSYGS 60

Query: 61  PTSHPGLSHAPTSRRPLTRAYSSGHNERRGEERTWSSESSMIIEGMRRASPYTPQEKRHR 120
           PTSHPGLSH PTSRRPLTRAYSSGHNER GEER WSSESS+IIEGMRRASPYTPQEKRHR
Sbjct: 61  PTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHR 120

Query: 121 IERYKIKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN 180
           IERYK KRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN
Sbjct: 121 IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN 180

Query: 181 AMPEDDASWTTFLDSYSLNFVP 202
           AM EDDASWTTFLDSYSLNFVP
Sbjct: 181 AMAEDDASWTTFLDSYSLNFVP 202

[Close]

BLAST of Cp4.1LG02g13080 vs. NCBI nr
Match: KAG7036907.1 (Zinc finger protein CONSTANS-LIKE 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 385 bits (990), Expect = 9.38e-135
Identity = 195/202 (96.53%), Postives = 196/202 (97.03%), Query Frame = 0


Query: 1   MHSHSAATADASLSHLQPPPPFPSFSNLICSHNPFPMVEALEVSYSGSSSGGCSYSSYGS 60
           MHSHSAATADASLSHLQPPPPFPSFSNLI SHNPFPMVEALEVSYSGSSSGGCSYSSYGS
Sbjct: 1   MHSHSAATADASLSHLQPPPPFPSFSNLIHSHNPFPMVEALEVSYSGSSSGGCSYSSYGS 60

Query: 61  PTSHPGLSHAPTSRRPLTRAYSSGHNERRGEERTWSSESSMIIEGMRRASPYTPQEKRHR 120
           PTSHPGLSH PTSRRPLTRAYSSGHNER GEER WSSESS+IIEGMRRASPYTPQEKRHR
Sbjct: 61  PTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHR 120

Query: 121 IERYKIKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN 180
           IERYK KRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN
Sbjct: 121 IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN 180

Query: 181 AMPEDDASWTTFLDSYSLNFVP 202
           AM EDDASWTTFLDSYSLNFVP
Sbjct: 181 AMAEDDASWTTFLDSYSLNFVP 202

[Close]

BLAST of Cp4.1LG02g13080 vs. NCBI nr
Match: XP_022998187.1 (zinc finger protein CONSTANS-LIKE 4-like [Cucurbita maxima])

HSP 1 Score: 376 bits (966), Expect = 3.98e-131
Identity = 191/202 (94.55%), Postives = 195/202 (96.53%), Query Frame = 0


Query: 1   MHSHSAATADASLSHLQPPPPFPSFSNLICSHNPFPMVEALEVSYSGSSSGGCSYSSYGS 60
           MHSHSAATADASLSHLQPPPPFPSFSNLI SHNPFP+VEALEVSYSGSSSGGCS  SYGS
Sbjct: 1   MHSHSAATADASLSHLQPPPPFPSFSNLIYSHNPFPIVEALEVSYSGSSSGGCS--SYGS 60

Query: 61  PTSHPGLSHAPTSRRPLTRAYSSGHNERRGEERTWSSESSMIIEGMRRASPYTPQEKRHR 120
           PTSHPGLSH P+SRRPLTRAYSSGHNERRGEER WSSESS+IIEGMRRASPYTPQEKRHR
Sbjct: 61  PTSHPGLSHGPSSRRPLTRAYSSGHNERRGEERAWSSESSLIIEGMRRASPYTPQEKRHR 120

Query: 121 IERYKIKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN 180
           IERYK KRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSP+ETWSCYDN
Sbjct: 121 IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPIETWSCYDN 180

Query: 181 AMPEDDASWTTFLDSYSLNFVP 202
           AM EDDASWTTFLDSYSLNFVP
Sbjct: 181 AMAEDDASWTTFLDSYSLNFVP 200

[Close]

BLAST of Cp4.1LG02g13080 vs. NCBI nr
Match: XP_022949263.1 (zinc finger protein CONSTANS-LIKE 4-like [Cucurbita moschata])

HSP 1 Score: 371 bits (953), Expect = 3.82e-129
Identity = 190/202 (94.06%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 1   MHSHSAATADASLSHLQPPPPFPSFSNLICSHNPFPMVEALEVSYSGSSSGGCSYSSYGS 60
           MHSH+AATADASLSHLQPPPPFPSFSN I SHNP PMVEALEVSYSGSSSGGCS  SYGS
Sbjct: 1   MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGCS--SYGS 60

Query: 61  PTSHPGLSHAPTSRRPLTRAYSSGHNERRGEERTWSSESSMIIEGMRRASPYTPQEKRHR 120
           PTSHPGLSH PTSRRPLTRAYSSGHNER GEER WSSESS+IIEGMRRASPYTPQEKRHR
Sbjct: 61  PTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHR 120

Query: 121 IERYKIKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN 180
           IERYK KRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN
Sbjct: 121 IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN 180

Query: 181 AMPEDDASWTTFLDSYSLNFVP 202
           AM EDDASWTTFLDSYSLNFVP
Sbjct: 181 AMAEDDASWTTFLDSYSLNFVP 200

[Close]

BLAST of Cp4.1LG02g13080 vs. NCBI nr
Match: XP_023524572.1 (uncharacterized protein LOC111788469 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 328 bits (842), Expect = 9.61e-113
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 37  MVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHAPTSRRPLTRAYSSGHNERRGEERTWS 96
           MVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHAPTSRRPLTRAYSSGHNERRGEERTWS
Sbjct: 1   MVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHAPTSRRPLTRAYSSGHNERRGEERTWS 60

Query: 97  SESSMIIEGMRRASPYTPQEKRHRIERYKIKRNQRNFNKKIKYECRKTLADSRKRIRGRF 156
           SESSMIIEGMRRASPYTPQEKRHRIERYKIKRNQRNFNKKIKYECRKTLADSRKRIRGRF
Sbjct: 61  SESSMIIEGMRRASPYTPQEKRHRIERYKIKRNQRNFNKKIKYECRKTLADSRKRIRGRF 120

Query: 157 ARNEEAENSNSTSSPVETWSCYDNAMPEDDASWTTFLDSYSLNFVP 202
           ARNEEAENSNSTSSPVETWSCYDNAMPEDDASWTTFLDSYSLNFVP
Sbjct: 121 ARNEEAENSNSTSSPVETWSCYDNAMPEDDASWTTFLDSYSLNFVP 166

[Close]

BLAST of Cp4.1LG02g13080 vs. ExPASy TrEMBL
Match: A0A6J1K781 (zinc finger protein CONSTANS-LIKE 4-like OS=Cucurbita maxima OX=3661 GN=LOC111492912 PE=4 SV=1)

HSP 1 Score: 376 bits (966), Expect = 1.93e-131
Identity = 191/202 (94.55%), Postives = 195/202 (96.53%), Query Frame = 0


Query: 1   MHSHSAATADASLSHLQPPPPFPSFSNLICSHNPFPMVEALEVSYSGSSSGGCSYSSYGS 60
           MHSHSAATADASLSHLQPPPPFPSFSNLI SHNPFP+VEALEVSYSGSSSGGCS  SYGS
Sbjct: 1   MHSHSAATADASLSHLQPPPPFPSFSNLIYSHNPFPIVEALEVSYSGSSSGGCS--SYGS 60

Query: 61  PTSHPGLSHAPTSRRPLTRAYSSGHNERRGEERTWSSESSMIIEGMRRASPYTPQEKRHR 120
           PTSHPGLSH P+SRRPLTRAYSSGHNERRGEER WSSESS+IIEGMRRASPYTPQEKRHR
Sbjct: 61  PTSHPGLSHGPSSRRPLTRAYSSGHNERRGEERAWSSESSLIIEGMRRASPYTPQEKRHR 120

Query: 121 IERYKIKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN 180
           IERYK KRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSP+ETWSCYDN
Sbjct: 121 IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPIETWSCYDN 180

Query: 181 AMPEDDASWTTFLDSYSLNFVP 202
           AM EDDASWTTFLDSYSLNFVP
Sbjct: 181 AMAEDDASWTTFLDSYSLNFVP 200

[Close]

BLAST of Cp4.1LG02g13080 vs. ExPASy TrEMBL
Match: A0A6J1GBJ0 (zinc finger protein CONSTANS-LIKE 4-like OS=Cucurbita moschata OX=3662 GN=LOC111452672 PE=4 SV=1)

HSP 1 Score: 371 bits (953), Expect = 1.85e-129
Identity = 190/202 (94.06%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 1   MHSHSAATADASLSHLQPPPPFPSFSNLICSHNPFPMVEALEVSYSGSSSGGCSYSSYGS 60
           MHSH+AATADASLSHLQPPPPFPSFSN I SHNP PMVEALEVSYSGSSSGGCS  SYGS
Sbjct: 1   MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGCS--SYGS 60

Query: 61  PTSHPGLSHAPTSRRPLTRAYSSGHNERRGEERTWSSESSMIIEGMRRASPYTPQEKRHR 120
           PTSHPGLSH PTSRRPLTRAYSSGHNER GEER WSSESS+IIEGMRRASPYTPQEKRHR
Sbjct: 61  PTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHR 120

Query: 121 IERYKIKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN 180
           IERYK KRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN
Sbjct: 121 IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN 180

Query: 181 AMPEDDASWTTFLDSYSLNFVP 202
           AM EDDASWTTFLDSYSLNFVP
Sbjct: 181 AMAEDDASWTTFLDSYSLNFVP 200

[Close]

BLAST of Cp4.1LG02g13080 vs. ExPASy TrEMBL
Match: A0A6J1I3X3 (zinc finger protein CONSTANS-LIKE 5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469436 PE=4 SV=1)

HSP 1 Score: 197 bits (501), Expect = 2.85e-60
Identity = 134/235 (57.02%), Postives = 155/235 (65.96%), Query Frame = 0


Query: 1   MHSHSAATADASLSHLQPP------PPFPSFSNLICSHNPF------PMVEAL-----EV 60
           MH+ S+AT +ASL HL  P      P   SF + I SH+        PM+E       E+
Sbjct: 1   MHAFSSATLEASLCHLPTPDLAVSPPLLASFPHFISSHSSLLASELAPMLEPSGLLPSEL 60

Query: 61  SYSGSSSGGCSYSSYGSPTSHP--GLSHAPTSR--------RPLTRAYSSGHNERRGE-E 120
           SYS  SSG CS  SY SPTS P   +SH P  +          + RAY S  N+ +G  E
Sbjct: 61  SYS-CSSGPCS--SYESPTSKPQRSMSHGPGVQISMLFDLESSVRRAYRS--NDLQGRTE 120

Query: 121 RTWSSESSMIIEGMR-RASPYTPQEKRHRIERYKIKRNQRNFNKKIKYECRKTLADSRKR 180
            T S+ESS+IIEGM  +A  Y+P+EKR RIE+YK KRNQRNFNKKIKYECRKTLADSR+R
Sbjct: 121 MTNSNESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRKTLADSRRR 180

Query: 181 IRGRFARNEEAENSNSTSSPVETWSCYDNAMPE----DDASWTTFLDSYSLNFVP 202
           IRGRFARNEE ENSNSTSSP ETWSCYDNA  E    DD SW TFLDSYS+NF+P
Sbjct: 181 IRGRFARNEEVENSNSTSSPTETWSCYDNATTEEDGQDDGSWITFLDSYSVNFIP 230

[Close]

BLAST of Cp4.1LG02g13080 vs. ExPASy TrEMBL
Match: A0A6J1HLZ0 (zinc finger protein CONSTANS-LIKE 5-like OS=Cucurbita moschata OX=3662 GN=LOC111464822 PE=4 SV=1)

HSP 1 Score: 189 bits (481), Expect = 6.26e-57
Identity = 131/235 (55.74%), Postives = 151/235 (64.26%), Query Frame = 0


Query: 1   MHSHSAATADASLSHL------QPPPPFPSFSNLICSHNP----------FPMVEA---- 60
           MH+ S+AT +ASL HL        PP   SF + I SH+            PM+E+    
Sbjct: 1   MHAFSSATLEASLCHLPAPDLAMSPPLLASFPHFISSHSSSFSSLLASDLVPMLESPGLL 60

Query: 61  -LEVSYSGSSSGGCSYSSYGSPTSHP--GLSHAPTSR--------RPLTRAYSSGHNERR 120
             E+SYS  SSG CS  SYGSPTS P   + H P  +          + RAYS   N+ +
Sbjct: 61  PSELSYS-CSSGPCS--SYGSPTSKPQRSMRHRPNVQISTLFDLESSVRRAYS--FNDLQ 120

Query: 121 GE-ERTWSSESSMIIEGMR-RASPYTPQEKRHRIERYKIKRNQRNFNKKIKYECRKTLAD 180
           G  E   SSESS+IIEGM  +A  Y+P+EKR RIE+YK KRNQRNFNKKIKYECRKTLAD
Sbjct: 121 GRTEMASSSESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRKTLAD 180

Query: 181 SRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMPE----DDASWTTFLDSYSL 198
           SR+RIRGRFARNEE ENSNSTSSP ETWSCYDNA  E    DD SW TFLDSYS+
Sbjct: 181 SRRRIRGRFARNEEVENSNSTSSPTETWSCYDNATAEEVGQDDGSWITFLDSYSV 230

[Close]

BLAST of Cp4.1LG02g13080 vs. ExPASy TrEMBL
Match: A0A6J1DVX1 (uncharacterized protein LOC111023585 OS=Momordica charantia OX=3673 GN=LOC111023585 PE=4 SV=1)

HSP 1 Score: 183 bits (465), Expect = 7.48e-55
Identity = 129/239 (53.97%), Postives = 145/239 (60.67%), Query Frame = 0


Query: 1   MHSHSAATADASLSHLQPP-------PPFPSFSNLICSH-NPFPMV-------------- 60
           MH  SAA     L HL  P       PPFPS  N   SH +P P+               
Sbjct: 1   MHGLSAAA----LCHLHSPDIAISPLPPFPSLPNFSLSHYSPSPLSAYCQLLRCQLDSVP 60

Query: 61  --EAL---EVSYSGSSSGGCSYSSYGSPTSHPGLSHAPTSRR----------PLTRAYSS 120
             E L   EVSYSGSS G CS  S GSPTS PGL     S            P+ R +S+
Sbjct: 61  ESEGLLNSEVSYSGSS-GPCS--SNGSPTSQPGLIQRSLSSHGLDLQLSALGPVRRVHSA 120

Query: 121 GHNERRGEERTWSSESSMIIEGMRRASPYTPQEKRHRIERYKIKRNQRNFNKKIKYECRK 180
           G  + R E R WSSESS+IIEGM +A  Y+P+EKR RIERYK KRNQRNFNKKIKYECRK
Sbjct: 121 GDLQGRAE-RGWSSESSLIIEGMAKACRYSPEEKRERIERYKTKRNQRNFNKKIKYECRK 180

Query: 181 TLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMPEDDASWTTFLDSYSLNFVP 202
           TLADSR+RIRGRFARNEE E+ N T+SPVE+WS    A  EDD SW +FLDS S+N VP
Sbjct: 181 TLADSRRRIRGRFARNEETEHKNFTTSPVESWSY---ATGEDDGSWISFLDSCSVNLVP 228

[Close]

BLAST of Cp4.1LG02g13080 vs. TAIR 10
Match: AT5G59990.1 (CCT motif family protein )

HSP 1 Score: 104.8 bits (260), Expect = 8.5e-23
Identity = 87/213 (40.85%), Postives = 108/213 (50.70%), Query Frame = 0


Query: 15  HLQPPPPFPSFSNLICSHNPFPMVEALE------------------VSYSGSSSGGCSYS 74
           H  PPPP    + L+ S N     EA+                    S S   SGG S  
Sbjct: 36  HQFPPPP---LALLMMSQNSLYAAEAVSGFGYFDSGMNGGGGSSSCDSPSSMGSGGESLV 95

Query: 75  SYGSPTSHPGLSHAPTSRR--------PLTRAYSSGHNER--RGEERTWSSESSMIIEGM 134
              S +SH G S   T+          P+ RA S+G   R  R E  T  SES+ IIEGM
Sbjct: 96  MQRSVSSHNGFSGNYTAAHDFVNDDDGPVRRALSAGDLPRSSRRESSTVWSESNAIIEGM 155

Query: 135 RRASPYTPQEKRHRIERYKIKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSN 194
            +A  Y+P+EK+ +IE+Y+ KRN RNFNK+IKYECRKTLADSR RIRGRFARN+E     
Sbjct: 156 SKAYKYSPEEKKEKIEKYRSKRNLRNFNKRIKYECRKTLADSRPRIRGRFARNDEISQQE 215

Query: 195 STSSPVETWSCYDNAMPEDDASWTTFLDSYSLN 200
                         A+  D  +W +FLDS+S N
Sbjct: 216 QVD--------VMEAVVGDVDTWASFLDSFSAN 237

[Close]

BLAST of Cp4.1LG02g13080 vs. TAIR 10
Match: AT5G41380.1 (CCT motif family protein )

HSP 1 Score: 73.2 bits (178), Expect = 2.7e-13
Identity = 58/161 (36.02%), Postives = 85/161 (52.80%), Query Frame = 0


Query: 36  PMVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHAPTSRRPLTRAYSSGHNERRGEERTW 95
           PM+++  +SY+  SS   ++ S                   + R YS+G  +   E +  
Sbjct: 149 PMMDSSNLSYNNLSSPENAFFS-----------------SQMRRVYSTGDLQNNMEMQRS 208

Query: 96  SSESSMII--EGMRRASPYTPQEKRHRIERYKIKRNQRNFNKKIKYECRKTLADSRKRIR 155
           S  S+M    E   +   Y+ +E++ +I +Y+ KRNQRNF K IKY CRKTLADSR RIR
Sbjct: 209 SENSTMPFSEEQNFKVGRYSAEERKEKISKYRAKRNQRNFTKTIKYACRKTLADSRPRIR 268

Query: 156 GRFARNEE-AENSNSTSSPVETWSCYDNAMPEDDASWTTFL 194
           GRFARN+E  E  N      E W   D    +++AS ++F+
Sbjct: 269 GRFARNDEVVEIPNIEDDDSELWK-LDGLHEKEEASVSSFV 291

[Close]

BLAST of Cp4.1LG02g13080 vs. TAIR 10
Match: AT2G33350.1 (CCT motif family protein )

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-12
Identity = 38/81 (46.91%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 106 MRRASPYTPQEKRHRIERYKIKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENS 165
           + +    +P++++ +I RY  KRN+RNFNKKIKY CRKTLADSR R+RGRFA+N+E    
Sbjct: 300 LNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAKNDEFGEP 359

Query: 166 NSTSSPVETWSCYDNAMPEDD 187
           N      + +S + +   EDD
Sbjct: 360 NR-----QAFSSHHDDEDEDD 375

[Close]

BLAST of Cp4.1LG02g13080 vs. TAIR 10
Match: AT2G33350.2 (CCT motif family protein )

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-12
Identity = 38/81 (46.91%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 106 MRRASPYTPQEKRHRIERYKIKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENS 165
           + +    +P++++ +I RY  KRN+RNFNKKIKY CRKTLADSR R+RGRFA+N+E    
Sbjct: 299 LNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAKNDEFGEP 358

Query: 166 NSTSSPVETWSCYDNAMPEDD 187
           N      + +S + +   EDD
Sbjct: 359 NR-----QAFSSHHDDEDEDD 374

[Close]

BLAST of Cp4.1LG02g13080 vs. TAIR 10
Match: AT3G12890.1 (activator of spomin::LUC2 )

HSP 1 Score: 68.9 bits (167), Expect = 5.2e-12
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 90  GEERTWSSESSMIIEGMRRASPYTPQEKRHRIERYKIKRNQRNFNKKIKYECRKTLADSR 149
           GE+   +SE  +  E   +   Y+ +E++ RI RY  K+NQRNFNK IKY CRKTLAD R
Sbjct: 112 GEQSWGNSEGGIQAEPNTKVGRYSVEERKDRIMRYLKKKNQRNFNKTIKYVCRKTLADRR 171

Query: 150 KRIRGRFARNEE 162
            R+RGRFARN +
Sbjct: 172 VRVRGRFARNND 183

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g13080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940T9	2.7e-05	45.16	Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2...	[more]

BLAST of Cp4.1LG02g13080 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607222.1	6.60e-135	96.53	Zinc finger protein CONSTANS-LIKE 4, partial [Cucurbita argyrosperma subsp. soro...	[more]
KAG7036907.1	9.38e-135	96.53	Zinc finger protein CONSTANS-LIKE 4, partial [Cucurbita argyrosperma subsp. argy...	[more]
XP_022998187.1	3.98e-131	94.55	zinc finger protein CONSTANS-LIKE 4-like [Cucurbita maxima]	[more]
XP_022949263.1	3.82e-129	94.06	zinc finger protein CONSTANS-LIKE 4-like [Cucurbita moschata]	[more]
XP_023524572.1	9.61e-113	100.00	uncharacterized protein LOC111788469 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cp4.1LG02g13080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K781	1.93e-131	94.55	zinc finger protein CONSTANS-LIKE 4-like OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1GBJ0	1.85e-129	94.06	zinc finger protein CONSTANS-LIKE 4-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1I3X3	2.85e-60	57.02	zinc finger protein CONSTANS-LIKE 5-like isoform X1 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1HLZ0	6.26e-57	55.74	zinc finger protein CONSTANS-LIKE 5-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1DVX1	7.48e-55	53.97	uncharacterized protein LOC111023585 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of Cp4.1LG02g13080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59990.1	8.5e-23	40.85	CCT motif family protein	[more]
AT5G41380.1	2.7e-13	36.02	CCT motif family protein	[more]
AT2G33350.1	2.3e-12	46.91	CCT motif family protein	[more]
AT2G33350.2	2.3e-12	46.91	CCT motif family protein	[more]
AT3G12890.1	5.2e-12	52.78	activator of spomin::LUC2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010402	CCT domain	PFAM	PF06203	CCT	coord: 118..159 e-value: 1.0E-16 score: 60.8
IPR010402	CCT domain	PROSITE	PS51017	CCT	coord: 117..159 score: 14.594305
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..98
None	No IPR available	PANTHER	PTHR31319:SF73	CCT MOTIF FAMILY PROTEIN	coord: 75..197
None	No IPR available	PANTHER	PTHR31319	ZINC FINGER PROTEIN CONSTANS-LIKE 4	coord: 75..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g13080.1	Cp4.1LG02g13080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding