Cp4.1LG02g12950 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g12950
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	THO complex subunit 4A
Location	Cp4.1LG02: 11387994 .. 11392239 (-)
RNA-Seq Expression	Cp4.1LG02g12950
Synteny	Cp4.1LG02g12950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCATGGGCTTTATAACCAAGTTGGCTCAATTCTCATCTGGTTGGTTCTCTACTTTAATCTTTGTTTTCAATTACTTGCAGAATTTAGATCTCATTAACATTTTTGCATTGGTAAGCTAGAAGGATCCATAATGTTTCTCTGTTGATCTGTTTAGTGGAAGCATAAGGTTCTCAGTATCTTCATGCGAGACCTGGCTAAATTTGTTGGCTATTGGGCAATAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNCCAGCTGCTTTTCCTGAAATCATTACTCTAAATTCTCTGGTGCTCTATCCTAGACCACAATTATATAGCTATTTTTTCAAATATGAAAGTACCCTCTCGGTAGATCTACACGTTTTAGGTTATCTAGACTTTCGTTAAATAATTCATGTGTAAGAGTACAATAGGGAGACCTACATTTTTAACTCTCAGTATAAATGATGTATCAATTTTAATTCATGTAGTCCAACTCCATAATTGTACAAATATTTTTCACTTTGTTGGTCGGGCAAACCAAGGAAACTAAAGCTTCCCAGATTAGATTAAATTTGTAATTTAATTTTTTTAAAAATAAAAAAGACGGTAAAAGGAAAATTTATTTAAAGAATATTGAATGGAAAAAAATGTCAGAATCGGTCTTGTTCGTAATCACCACCACAATTACAATCATTAAACTTGATGATCTATAGAAATAAATAGAAAGATGCATTTTCGGGAGAGCTTTGAGTTCGAGTGACATTTCACCCTTAATTACAACTCATCCGTTGATTTTTTAACATCAATCGGTTCCGAGCTCTACTTAGTTTCACCCAAACCAATTTTAATTAATTTCGGAGAGTATATTTCTCTAATCTAATTAATTTAACCTAAAAAAAAATCCATAAATTAGAAAGATAAAAAGTAAATTTTAAGGATAAGAATATTTGTAAATATTTTTTAAAAGTCATAAATTAGAAAGATAAAAGTAAATTTTAAGGATAAGAATATTTGTAAATATTTTTTAAAAGTGTTATTGTTTATTTTAAATATTTTTGAGAGAATAATGGTATTTTAAAATTTTTAAAATTTTTGTATATTATTGATTATTATTATTATTATTATTATTATTATGTTATTAGCGGACATCGAATTTTGGTAATTGGCTTCTCTCTCGCGCTTTTCATCACATCACAGCGTTCGATTGAGAAACCCTAGAATTCTCTTTCCTCTCTGTTTCCCTGAGCCACGACCACCACTCCTCCGCCATCACCATGGTCGACCCTCTTGACACCAGCTTAGATGATATCATCAAGAACAACAAGAAATCCGGATCCTCAAACTTCAGGGGCCGCGGCGGTGCTTCTTCTGGACCAGCTCCCTCTCGCCGCTTTAACAATCGCGGTCTTAATAGAGCAGCGCCCTATTCTAGAGCCAAGGTGAAGGAATTTGAGTTTTAAACATCCCGCTTTCGCTCAATCTTACTTTACCAACACCACTCTCTTACTCTATTACTACTACTACTACTGCTGCTGCTACTACTACTAATACAAGTGTTTCTCGTGGGGGTTTAGGCGCCTGAGACGCCTTGGTCACACGACTTGTTTGTAGATCATGGTGTGGCGTATCCTTCACACCCTGCACGGGCCTCTACTATTGAAACTGGCACGAAGCTTTATGTTTCGAATTTGGATTATGGTGTTTCCAACGAGGATATCAAGGTATTTCAATTTTGGATTTGTGGATTGGAACATAAGAGTGTTCTCTTTTTTTTTTTTTTTTTGTGTCACTAAGACTTGGTTACATTTGTATATGCAGGAACTTTTTTCTGAAGTTGGCGATCTTAAACGGTATTCTATAAATTATGATAAAAGTGGGAGATCAAAGGTATGTTTAAAGTGTGTCCTACACAAGGGCTCTTTTGTTTATTAACCATATTTTCACGTTGTAATTTTTATTCCTCGTAGGGAACAGCAGAAGTAGTTTTTTCGCGACAAGCAGATGCTCTAGCTGCTATAAAGAGATACAACAATGTTCAGCTAGACGGGAAGCCCATGAAGTTGGAGATTGTGGGTGCAAACATCGTGACGCCTGTTCTACCTGCTCCTTCAAATCCCAATTTTGGGAACTCAAGTGGATTTCTTAGAGGGTATATATATATATTTTTTTCAATTCATTTGTTCTTATTTCTAATTTTCGATCTGCTTTTACGAGCGTAGTCATGTATTACTGCAGCTAATGGTATGTGGTCCGAAGTGGATGTAACTTTTTTCTTTACAATACCTTTGCCAGGCAATGTTTCAAGTACCTGTTTTTAGAGTTATATTAGGTTTTATTATGGATTTTTAACTTTTTCTTGTTGTTCTGATTTAGTCCATAGTTTAAATATATTTCATTGATTTGCAACATGTTCACTAGGAGCTTTGAAAAGGTCAAACATGCAAATATACAATCTCTAACATTTTTTATTGAACATGTGTGGACAAATGCGGTGATATGGAGGAAAAATAAAGCTAGATGGAGAATTAAGTTGTATTCATGATATTGTTAATTTTGTTTGTGATAACAACTTAAATTGTATTCATGGTATTCACCATGTTAATAGGTGCATTTGCATCCAACACTTCTATTTCTCAAATTGGAATTATACTGCATGCAATTATCTGCCTCCTAATATTTATACCATTATTCTTTTTAATTATCGTGGGTTTCTTAAATCTGACCATCTTATTCACCAACTGGGCTAATTTTATTAAAAATCATCTGAACTTACTTAATTTGGTGTTGAAATGGTGGTTATTTGTGTAATTATGATGATTTTTGGATGTCATTTTTATTTGGGGTATGTTTCGAATAGTAGACTATTATTGGATACATTTTTTAAAGTTTTATTTTTTCCTTTTTAGGGATCAATTTATACATCCTTTGCGAATAATTACCCTGTCTTGTGTTTTGATCGTATGAATCCAGAAGTTTTGATATTTAAGTTTTCCCATGATGGTGGTGTATTATATAAGCAAAAAAGAAAAATGTTAATGAAGCCTGCCTCTTGAATAGTTATGGTAACCTTGTTGTGTGCATGATCACACATTTGCTACTGTAGATTTCAATTTCATGGATTTCTCTGTCCTTGCTAGTGTAGATTTCAATTTCGTGGATTATTCTGTCCCTTCTATGTTTTAGGTGTTGCTAAAGTATGAAGCTAGTAATTATGTTTTAAATCTCTATAAATGCAATGTTTACATCAAACTTTTTTCATCTGATTTGATAGCTATTATTGGTTCTCTTAATCAAAATGCATTTCATTAAATTTTCGTTTGGTTTTAGCAGTGGACGTGCACTGGGCCGAAACCGGGGTGGTGGACGAGGTCGTGGTCCTGGAAGAGGAGGGCGTGGACGTGGCAATGGCAGAGGTGGTGGTGAAAAATTATCGGCCGAAGATCTAGATGCTGATTTGGAGAAGTACCATGAAGAAGCAANCAAATTATCGGCTGAAGATCTAGATGCTGATTTGGAGAAGTACCATGAAGAAGCAATGCAGATCAATTAAATCATTTGGTGTCATTTTNAATGCAGATCAATTAAATCATTTGGTGTCATTTTCTGGGGCTTGATATCCATAACTTCGTTAGGTTCTTGGTGATAAATGTGATGAGGACATCGTTTTCTGTTTTGCGAGTCATATCAAGAAGCCTTGACCTTGAGAGAACCGCTAGACCTTGCTATGATGTGGAGTTTGAGCTTGAATTGTTGTTTGTTGCAGTATACTATAAAGAGGTGTTAACTAATGCTTGAATGTAATCTCATGTTATCTATTTTGATTTGCTCCAATCTCATTTATTTTCTATGANTGGAGAAATGAAAGTCTTGGAAGCCATTGATTGCCGAAGTTTTTATGCGGAATGATAGAGCTTTGTAGGAAAGTGGGTCATGTGAGAATCATGGAGCTTGTAACATCTTCAAACAAAGCTCATCTTCTTCACCCTCTCTCTAGGTTACCAAATCTTTTTGAAGGTTGAGGAATGTGTGTTTGGGGTTCGTAGGAGGTGGGTCCCAAGGGATGTGTTCCTTCTTTTTACCTTTAAAATGATTAGAAGTGGATTTTTGTACCGCTTACAGATTCTTTAGGTAGCTAGAATTCTGATATTTATGCCTGCTGAGCGACTGGTTAGCAGTCCTTTTATACAAGTATCAAGTGTTTGACATAGCTAGCTAAATGAAGATATTCATTTGGTATCCAATG

mRNA sequence

AGCATGGGCTTTATAACCAAGTTGGCTCAATTCTCATCTGGTTGGTTCTCTACTTTAATCTTTGTTTTCAATTACTTGCAGAATTTAGATCTCATTAACATTTTTGCATTGGAACTTTTTTCTGAAGTTGGCGATCTTAAACGGTATTCTATAAATTATGATAAAAGTGGGAGATCAAAGGGAACAGCAGAAGTAGTTTTTTCGCGACAAGCAGATGCTCTAGCTGCTATAAAGAGATACAACAATGTTCAGCTAGACGGGAAGCCCATGAAGTTGGAGATTGTGGGTGCAAACATCGTGACGCCTGTTCTACCTGCTCCTTCAAATCCCAATTTTGGGAACTCAAGTGGATTTCTTAGAGGTGGACGTGCACTGGGCCGAAACCGGGGTGGTGGACGAGGTCGTGGTCCTGGAAGAGGAGGGCGTGGACGTGGCAATGGCAGAGGTGGTGGTGAAAAATTATCGGCCGAAGATCTAGATGCTGATTTGGAGAAGTACCATGAAGAAGCAANCAAATTATCGGCTGAAGATCTAGATGCTGATTTGGAGAAGTACCATGAAGAAGCAATGCAGATCAATTAAATCATTTGGTGTCATTTTNAATGCAGATCAATTAAATCATTTGGTGTCATTTTCTGGGGCTTGATATCCATAACTTCGTTAGGTTCTTGGTGATAAATGTGATGAGGACATCGTTTTCTGTTTTGCGAGTCATATCAAGAAGCCTTGACCTTGAGAGAACCGCTAGACCTTGCTATGATGTGGAGTTTGAGCTTGAATTGTTGTTTGTTGCAGTATACTATAAAGAGGTGTTAACTAATGCTTGAATGTAATCTCATGTTATCTATTTTGATTTGCTCCAATCTCATTTATTTTCTATGANTGGAGAAATGAAAGTCTTGGAAGCCATTGATTGCCGAAGTTTTTATGCGGAATGATAGAGCTTTGTAGGAAAGTGGGTCATGTGAGAATCATGGAGCTTGTAACATCTTCAAACAAAGCTCATCTTCTTCACCCTCTCTCTAGGTTACCAAATCTTTTTGAAGGTTGAGGAATGTGTGTTTGGGGTTCGTAGGAGGTGGGTCCCAAGGGATGTGTTCCTTCTTTTTACCTTTAAAATGATTAGAAGTGGATTTTTGTACCGCTTACAGATTCTTTAGGTAGCTAGAATTCTGATATTTATGCCTGCTGAGCGACTGGTTAGCAGTCCTTTTATACAAGTATCAAGTGTTTGACATAGCTAGCTAAATGAAGATATTCATTTGGTATCCAATG

Coding sequence (CDS)

AGCATGGGCTTTATAACCAAGTTGGCTCAATTCTCATCTGGTTGGTTCTCTACTTTAATCTTTGTTTTCAATTACTTGCAGAATTTAGATCTCATTAACATTTTTGCATTGGAACTTTTTTCTGAAGTTGGCGATCTTAAACGGTATTCTATAAATTATGATAAAAGTGGGAGATCAAAGGGAACAGCAGAAGTAGTTTTTTCGCGACAAGCAGATGCTCTAGCTGCTATAAAGAGATACAACAATGTTCAGCTAGACGGGAAGCCCATGAAGTTGGAGATTGTGGGTGCAAACATCGTGACGCCTGTTCTACCTGCTCCTTCAAATCCCAATTTTGGGAACTCAAGTGGATTTCTTAGAGGTGGACGTGCACTGGGCCGAAACCGGGGTGGTGGACGAGGTCGTGGTCCTGGAAGAGGAGGGCGTGGACGTGGCAATGGCAGAGGTGGTGGTGAAAAATTATCGGCCGAAGATCTAGATGCTGATTTGGAGAAGTACCATGAAGAAGCAANCAAATTATCGGCTGAAGATCTAGATGCTGATTTGGAGAAGTACCATGAAGAAGCAATGCAGATCAATTAA

Protein sequence

SMGFITKLAQFSSGWFSTLIFVFNYLQNLDLINIFALELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPAPSNPNFGNSSGFLRGGRALGRNRGGGRGRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAXKLSAEDLDADLEKYHEEAMQIN

Homology

[Close]

BLAST of Cp4.1LG02g12950 vs. ExPASy Swiss-Prot
Match: Q8L773 (THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.2e-34
Identity = 91/148 (61.49%), Postives = 115/148 (77.70%), Query Frame = 0


Query: 25  YLQNLD--LINIFALELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN 84
           Y+ NLD  ++N    ELF+EVG+LKRY++++D+SGRSKGTAEVV+SR+ DALAA+K+YN+
Sbjct: 91  YISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYND 150

Query: 85  VQLDGKPMKLEIVGANIVTPVLPAPSNPNFGNSSGF-LRGGRAL-GRNRGGGR-GRGPGR 144
           VQLDGKPMK+EIVG N+ T   P+   P  GNS+G   RGG+   G+ RGGGR G G G 
Sbjct: 151 VQLDGKPMKIEIVGTNLQTAAAPS-GRPANGNSNGAPWRGGQGRGGQQRGGGRGGGGRGG 210

Query: 145 GGRGRGNGRGGGEKLSAEDLDADLEKYH 168
           GGRGR  G+G  EK+SAEDLDADL+KYH
Sbjct: 211 GGRGRRPGKGPAEKISAEDLDADLDKYH 237

[Close]

BLAST of Cp4.1LG02g12950 vs. ExPASy Swiss-Prot
Match: Q8L719 (THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.0e-33
Identity = 102/182 (56.04%), Postives = 118/182 (64.84%), Query Frame = 0


Query: 25  YLQNLD--LINIFALELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN 84
           Y+ NLD  + N    ELFSEVGDLKRY I+YD+SGRSKGTAEVVFSR+ DALAA+KRYNN
Sbjct: 111 YISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNN 170

Query: 85  VQLDGKPMKLEIVGANIVTPVLPAPS---------------NPNF-----GNSSGFLRG- 144
           VQLDGK MK+EIVG N+  P LP  +               N NF     GN +G  RG 
Sbjct: 171 VQLDGKLMKIEIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGR 230

Query: 145 --GRALGRNRGGGRGRG---PGRGGRGRG----NGRGGGEKLSAEDLDADLEKYHEEAXK 175
             G  +GR RGGG G G    GRG RGRG     GRG  E +SAEDLDA+L+KYH+EA +
Sbjct: 231 GRGGFMGRPRGGGFGGGNFRGGRGARGRGGRGSGGRGRDENVSAEDLDAELDKYHKEAME 290

[Close]

BLAST of Cp4.1LG02g12950 vs. ExPASy Swiss-Prot
Match: Q6NQ72 (THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 7.9e-23
Identity = 83/193 (43.01%), Postives = 106/193 (54.92%), Query Frame = 0


Query: 25  YLQNLD--LINIFALELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN 84
           ++ NLD  + N    ELFSE+G+++RY+I+YDK+GR  GTAEVV+ R++DA  A+K+YNN
Sbjct: 96  HVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNN 155

Query: 85  VQLDGKPMKLEIVGANIVTPV-LPAPSNPNFGNSSGFLR-------GGRALGRNRGGGRG 144
           V LDG+PM+LEI+G N  +   L    N N    +G L+       GG   GR RGG  G
Sbjct: 156 VLLDGRPMRLEILGGNNSSEAPLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGG 215

Query: 145 RGP------------------------------GRGGRGRGNGRGGGEK---LSAEDLDA 175
           RGP                              G GGRGRG GRG G+K    SA DLD 
Sbjct: 216 RGPAPTVSRRLPIHNQQGGGMRGGRGGFRARGRGNGGRGRGGGRGNGKKPVEKSAADLDK 275

[Close]

BLAST of Cp4.1LG02g12950 vs. ExPASy Swiss-Prot
Match: Q94EH8 (THO complex subunit 4C OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.0e-22
Identity = 85/196 (43.37%), Postives = 112/196 (57.14%), Query Frame = 0


Query: 25  YLQNLD--LINIFALELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN 84
           Y+ NLD  + N    EL++E+G+LKRY+I+YDK+GR  G+AEVV+ R++DA+ A+++YNN
Sbjct: 110 YITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNN 169

Query: 85  VQLDGKPMKLEIVGANIVTPVLPAPSNPNFGNSSGFLRGGRALGRN-RGG----GRGRGP 144
           V LDG+PMKLEI+G N  T   P  +  N    +G ++    +G+  RGG    GRG GP
Sbjct: 170 VLLDGRPMKLEILGGN--TESAPVAARVNVTGLNGRMKRSVFIGQGVRGGRVGRGRGSGP 229

Query: 145 -----------------GRG---GRGRGNGRGGGEKLSAEDLDADLEKYHEEAXKLSAED 194
                            GRG   GRGRGNG G G K         +EK        SA D
Sbjct: 230 SGRRLPLQQNQQGGVTAGRGGFRGRGRGNGGGRGNKSGGRGGKKPVEK--------SAAD 289

[Close]

BLAST of Cp4.1LG02g12950 vs. ExPASy Swiss-Prot
Match: B5FXN8 (THO complex subunit 4 OS=Taeniopygia guttata OX=59729 GN=ALYREF PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.8e-19
Identity = 66/132 (50.00%), Postives = 86/132 (65.15%), Query Frame = 0


Query: 38  ELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGA 97
           ELF+E G LK+ +++YD+SGRS GTA+V F R+ADAL A+K+YN V LDG+PM +++V +
Sbjct: 121 ELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTS 180

Query: 98  NIVTPVLPAPSNPNFGNSSGFLRGGRALGRNRGGGRGRGP--GRGGRGRGNGRGGGEKLS 157
            I T   PA S     N  G  R    LG   GGG  RG   G  GRGRG GR   ++LS
Sbjct: 181 QIDTQRRPAQS----VNRGGMTRNRGVLGGFGGGGNRRGTRGGNRGRGRGAGRTSKQQLS 240

Query: 158 AEDLDADLEKYH 168
           AE+LDA L+ Y+
Sbjct: 241 AEELDAQLDAYN 248

[Close]

BLAST of Cp4.1LG02g12950 vs. NCBI nr
Match: XP_023523169.1 (THO complex subunit 4A-like isoform X3 [Cucurbita pepo subsp. pepo] >XP_023523170.1 THO complex subunit 4A-like isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 251 bits (642), Expect = 2.43e-81
Identity = 138/152 (90.79%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 25  YLQNLD--LINIFALELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN 84
           Y+ NLD  + N    ELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN
Sbjct: 90  YVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN 149

Query: 85  VQLDGKPMKLEIVGANIVTPVLPAPSNPNFGNSSGFLRGGRALGRNRGGGRGRGPGRGGR 144
           VQLDGKPMKLEIVGANIVTPVLPAPSNPNFGNSSGFLRGGRALGRNRGGGRGRGPGRGGR
Sbjct: 150 VQLDGKPMKLEIVGANIVTPVLPAPSNPNFGNSSGFLRGGRALGRNRGGGRGRGPGRGGR 209

Query: 145 GRGNGRGGGEKLSAEDLDADLEKYHEEAXKLS 174
           GRGNGRGGGEKLSAEDLDADLEKYHEEA +++
Sbjct: 210 GRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN 241

[Close]

BLAST of Cp4.1LG02g12950 vs. NCBI nr
Match: XP_022948706.1 (THO complex subunit 4A-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 248 bits (634), Expect = 3.99e-80
Identity = 137/152 (90.13%), Postives = 142/152 (93.42%), Query Frame = 0


Query: 25  YLQNLD--LINIFALELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN 84
           Y+ NLD  + N    ELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN
Sbjct: 90  YVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN 149

Query: 85  VQLDGKPMKLEIVGANIVTPVLPAPSNPNFGNSSGFLRGGRALGRNRGGGRGRGPGRGGR 144
           VQLDGKPMKLEIVGANIVTPVLPA SNPNFGNSSGFLRGGRALGRNRGGGRGRGPGRGGR
Sbjct: 150 VQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGGRALGRNRGGGRGRGPGRGGR 209

Query: 145 GRGNGRGGGEKLSAEDLDADLEKYHEEAXKLS 174
           GRGNGRGGGEKLSAEDLDADLEKYHEEA +++
Sbjct: 210 GRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN 241

[Close]

BLAST of Cp4.1LG02g12950 vs. NCBI nr
Match: XP_023523167.1 (THO complex subunit 4A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023523168.1 THO complex subunit 4A-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 247 bits (630), Expect = 1.67e-79
Identity = 138/153 (90.20%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 25  YLQNLD--LINIFALELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN 84
           Y+ NLD  + N    ELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN
Sbjct: 90  YVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN 149

Query: 85  VQLDGKPMKLEIVGANIVTPVLPAPSNPNFGNSSGFLRG-GRALGRNRGGGRGRGPGRGG 144
           VQLDGKPMKLEIVGANIVTPVLPAPSNPNFGNSSGFLRG GRALGRNRGGGRGRGPGRGG
Sbjct: 150 VQLDGKPMKLEIVGANIVTPVLPAPSNPNFGNSSGFLRGSGRALGRNRGGGRGRGPGRGG 209

Query: 145 RGRGNGRGGGEKLSAEDLDADLEKYHEEAXKLS 174
           RGRGNGRGGGEKLSAEDLDADLEKYHEEA +++
Sbjct: 210 RGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN 242

[Close]

BLAST of Cp4.1LG02g12950 vs. NCBI nr
Match: XP_022997830.1 (THO complex subunit 4A-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 246 bits (629), Expect = 2.30e-79
Identity = 135/152 (88.82%), Postives = 142/152 (93.42%), Query Frame = 0


Query: 25  YLQNLD--LINIFALELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN 84
           Y+ NLD  + N    ELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN
Sbjct: 90  YVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN 149

Query: 85  VQLDGKPMKLEIVGANIVTPVLPAPSNPNFGNSSGFLRGGRALGRNRGGGRGRGPGRGGR 144
           VQLDGKPMKLE+VGANIVTPVLPA SNPNFGNSSGFLRGGRALGRN+GGGRGRGPGRGGR
Sbjct: 150 VQLDGKPMKLEVVGANIVTPVLPASSNPNFGNSSGFLRGGRALGRNQGGGRGRGPGRGGR 209

Query: 145 GRGNGRGGGEKLSAEDLDADLEKYHEEAXKLS 174
           GRGNGRGGGEKLSAEDLDADLEKYHEEA +++
Sbjct: 210 GRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN 241

[Close]

BLAST of Cp4.1LG02g12950 vs. NCBI nr
Match: XP_022948705.1 (THO complex subunit 4A-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 244 bits (622), Expect = 2.74e-78
Identity = 137/153 (89.54%), Postives = 142/153 (92.81%), Query Frame = 0


Query: 25  YLQNLD--LINIFALELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN 84
           Y+ NLD  + N    ELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN
Sbjct: 90  YVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN 149

Query: 85  VQLDGKPMKLEIVGANIVTPVLPAPSNPNFGNSSGFLRG-GRALGRNRGGGRGRGPGRGG 144
           VQLDGKPMKLEIVGANIVTPVLPA SNPNFGNSSGFLRG GRALGRNRGGGRGRGPGRGG
Sbjct: 150 VQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGSGRALGRNRGGGRGRGPGRGG 209

Query: 145 RGRGNGRGGGEKLSAEDLDADLEKYHEEAXKLS 174
           RGRGNGRGGGEKLSAEDLDADLEKYHEEA +++
Sbjct: 210 RGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN 242

[Close]

BLAST of Cp4.1LG02g12950 vs. ExPASy TrEMBL
Match: A0A6J1G9Y5 (THO complex subunit 4A-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452298 PE=4 SV=1)

HSP 1 Score: 248 bits (634), Expect = 1.93e-80
Identity = 137/152 (90.13%), Postives = 142/152 (93.42%), Query Frame = 0


Query: 25  YLQNLD--LINIFALELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN 84
           Y+ NLD  + N    ELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN
Sbjct: 90  YVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN 149

Query: 85  VQLDGKPMKLEIVGANIVTPVLPAPSNPNFGNSSGFLRGGRALGRNRGGGRGRGPGRGGR 144
           VQLDGKPMKLEIVGANIVTPVLPA SNPNFGNSSGFLRGGRALGRNRGGGRGRGPGRGGR
Sbjct: 150 VQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGGRALGRNRGGGRGRGPGRGGR 209

Query: 145 GRGNGRGGGEKLSAEDLDADLEKYHEEAXKLS 174
           GRGNGRGGGEKLSAEDLDADLEKYHEEA +++
Sbjct: 210 GRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN 241

[Close]

BLAST of Cp4.1LG02g12950 vs. ExPASy TrEMBL
Match: A0A6J1KAZ3 (THO complex subunit 4A-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492670 PE=4 SV=1)

HSP 1 Score: 246 bits (629), Expect = 1.11e-79
Identity = 135/152 (88.82%), Postives = 142/152 (93.42%), Query Frame = 0


Query: 25  YLQNLD--LINIFALELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN 84
           Y+ NLD  + N    ELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN
Sbjct: 90  YVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN 149

Query: 85  VQLDGKPMKLEIVGANIVTPVLPAPSNPNFGNSSGFLRGGRALGRNRGGGRGRGPGRGGR 144
           VQLDGKPMKLE+VGANIVTPVLPA SNPNFGNSSGFLRGGRALGRN+GGGRGRGPGRGGR
Sbjct: 150 VQLDGKPMKLEVVGANIVTPVLPASSNPNFGNSSGFLRGGRALGRNQGGGRGRGPGRGGR 209

Query: 145 GRGNGRGGGEKLSAEDLDADLEKYHEEAXKLS 174
           GRGNGRGGGEKLSAEDLDADLEKYHEEA +++
Sbjct: 210 GRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN 241

[Close]

BLAST of Cp4.1LG02g12950 vs. ExPASy TrEMBL
Match: A0A6J1GAN0 (THO complex subunit 4A-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452298 PE=4 SV=1)

HSP 1 Score: 244 bits (622), Expect = 1.33e-78
Identity = 137/153 (89.54%), Postives = 142/153 (92.81%), Query Frame = 0


Query: 25  YLQNLD--LINIFALELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN 84
           Y+ NLD  + N    ELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN
Sbjct: 90  YVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN 149

Query: 85  VQLDGKPMKLEIVGANIVTPVLPAPSNPNFGNSSGFLRG-GRALGRNRGGGRGRGPGRGG 144
           VQLDGKPMKLEIVGANIVTPVLPA SNPNFGNSSGFLRG GRALGRNRGGGRGRGPGRGG
Sbjct: 150 VQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGSGRALGRNRGGGRGRGPGRGG 209

Query: 145 RGRGNGRGGGEKLSAEDLDADLEKYHEEAXKLS 174
           RGRGNGRGGGEKLSAEDLDADLEKYHEEA +++
Sbjct: 210 RGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN 242

[Close]

BLAST of Cp4.1LG02g12950 vs. ExPASy TrEMBL
Match: A0A6J1KCN1 (THO complex subunit 4A-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492670 PE=4 SV=1)

HSP 1 Score: 242 bits (617), Expect = 7.63e-78
Identity = 135/153 (88.24%), Postives = 142/153 (92.81%), Query Frame = 0


Query: 25  YLQNLD--LINIFALELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN 84
           Y+ NLD  + N    ELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN
Sbjct: 90  YVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN 149

Query: 85  VQLDGKPMKLEIVGANIVTPVLPAPSNPNFGNSSGFLRG-GRALGRNRGGGRGRGPGRGG 144
           VQLDGKPMKLE+VGANIVTPVLPA SNPNFGNSSGFLRG GRALGRN+GGGRGRGPGRGG
Sbjct: 150 VQLDGKPMKLEVVGANIVTPVLPASSNPNFGNSSGFLRGSGRALGRNQGGGRGRGPGRGG 209

Query: 145 RGRGNGRGGGEKLSAEDLDADLEKYHEEAXKLS 174
           RGRGNGRGGGEKLSAEDLDADLEKYHEEA +++
Sbjct: 210 RGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN 242

[Close]

BLAST of Cp4.1LG02g12950 vs. ExPASy TrEMBL
Match: A0A1S3C5R6 (THO complex subunit 4A OS=Cucumis melo OX=3656 GN=LOC103497214 PE=4 SV=1)

HSP 1 Score: 220 bits (560), Expect = 3.74e-69
Identity = 123/156 (78.85%), Postives = 136/156 (87.18%), Query Frame = 0


Query: 25  YLQNLD--LINIFALELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN 84
           Y+ NLD  + N    ELFSEVGDLKRYSINYDKSGRSKGTAE++FSR ADALAAIKRYNN
Sbjct: 90  YVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEILFSRPADALAAIKRYNN 149

Query: 85  VQLDGKPMKLEIVGANIVTPVLPAPSNPNFGNSSGFLRGGRALGRNRGGGRGRGPGRGGR 144
           VQLDGKPMKLEIVG NIVTP +PAPSN +FGN +GF RGGRA+GRNRGGGRGRGPGRGGR
Sbjct: 150 VQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNHNGFPRGGRAMGRNRGGGRGRGPGRGGR 209

Query: 145 GRGNG----RGGGEKLSAEDLDADLEKYHEEAXKLS 174
           GRG+G    RG GEKLSAEDLDADL+KYHEEA +++
Sbjct: 210 GRGSGSGSGRGRGEKLSAEDLDADLDKYHEEAMQIN 245

[Close]

BLAST of Cp4.1LG02g12950 vs. TAIR 10
Match: AT5G59950.5 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 148.7 bits (374), Expect = 4.9e-36
Identity = 91/149 (61.07%), Postives = 116/149 (77.85%), Query Frame = 0


Query: 25  YLQNLD--LINIFALELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN 84
           Y+ NLD  ++N    ELF+EVG+LKRY++++D+SGRSKGTAEVV+SR+ DALAA+K+YN+
Sbjct: 91  YISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYND 150

Query: 85  VQLDGKPMKLEIVGANIVTPVLPAPSNPNFGNSSG--FLRGGRAL-GRNRGGGR-GRGPG 144
           VQLDGKPMK+EIVG N+ T   P+   P  GNS+G  + RGG+   G+ RGGGR G G G
Sbjct: 151 VQLDGKPMKIEIVGTNLQTAAAPS-GRPANGNSNGAPWSRGGQGRGGQQRGGGRGGGGRG 210

Query: 145 RGGRGRGNGRGGGEKLSAEDLDADLEKYH 168
            GGRGR  G+G  EK+SAEDLDADL+KYH
Sbjct: 211 GGGRGRRPGKGPAEKISAEDLDADLDKYH 238

[Close]

BLAST of Cp4.1LG02g12950 vs. TAIR 10
Match: AT5G59950.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 147.9 bits (372), Expect = 8.4e-36
Identity = 91/148 (61.49%), Postives = 115/148 (77.70%), Query Frame = 0


Query: 25  YLQNLD--LINIFALELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN 84
           Y+ NLD  ++N    ELF+EVG+LKRY++++D+SGRSKGTAEVV+SR+ DALAA+K+YN+
Sbjct: 91  YISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYND 150

Query: 85  VQLDGKPMKLEIVGANIVTPVLPAPSNPNFGNSSGF-LRGGRAL-GRNRGGGR-GRGPGR 144
           VQLDGKPMK+EIVG N+ T   P+   P  GNS+G   RGG+   G+ RGGGR G G G 
Sbjct: 151 VQLDGKPMKIEIVGTNLQTAAAPS-GRPANGNSNGAPWRGGQGRGGQQRGGGRGGGGRGG 210

Query: 145 GGRGRGNGRGGGEKLSAEDLDADLEKYH 168
           GGRGR  G+G  EK+SAEDLDADL+KYH
Sbjct: 211 GGRGRRPGKGPAEKISAEDLDADLDKYH 237

[Close]

BLAST of Cp4.1LG02g12950 vs. TAIR 10
Match: AT5G59950.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 147.9 bits (372), Expect = 8.4e-36
Identity = 91/148 (61.49%), Postives = 115/148 (77.70%), Query Frame = 0


Query: 25  YLQNLD--LINIFALELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN 84
           Y+ NLD  ++N    ELF+EVG+LKRY++++D+SGRSKGTAEVV+SR+ DALAA+K+YN+
Sbjct: 25  YISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYND 84

Query: 85  VQLDGKPMKLEIVGANIVTPVLPAPSNPNFGNSSGF-LRGGRAL-GRNRGGGR-GRGPGR 144
           VQLDGKPMK+EIVG N+ T   P+   P  GNS+G   RGG+   G+ RGGGR G G G 
Sbjct: 85  VQLDGKPMKIEIVGTNLQTAAAPS-GRPANGNSNGAPWRGGQGRGGQQRGGGRGGGGRGG 144

Query: 145 GGRGRGNGRGGGEKLSAEDLDADLEKYH 168
           GGRGR  G+G  EK+SAEDLDADL+KYH
Sbjct: 145 GGRGRRPGKGPAEKISAEDLDADLDKYH 171

[Close]

BLAST of Cp4.1LG02g12950 vs. TAIR 10
Match: AT5G59950.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 147.9 bits (372), Expect = 8.4e-36
Identity = 91/148 (61.49%), Postives = 115/148 (77.70%), Query Frame = 0


Query: 25  YLQNLD--LINIFALELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN 84
           Y+ NLD  ++N    ELF+EVG+LKRY++++D+SGRSKGTAEVV+SR+ DALAA+K+YN+
Sbjct: 89  YISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYND 148

Query: 85  VQLDGKPMKLEIVGANIVTPVLPAPSNPNFGNSSGF-LRGGRAL-GRNRGGGR-GRGPGR 144
           VQLDGKPMK+EIVG N+ T   P+   P  GNS+G   RGG+   G+ RGGGR G G G 
Sbjct: 149 VQLDGKPMKIEIVGTNLQTAAAPS-GRPANGNSNGAPWRGGQGRGGQQRGGGRGGGGRGG 208

Query: 145 GGRGRGNGRGGGEKLSAEDLDADLEKYH 168
           GGRGR  G+G  EK+SAEDLDADL+KYH
Sbjct: 209 GGRGRRPGKGPAEKISAEDLDADLDKYH 235

[Close]

BLAST of Cp4.1LG02g12950 vs. TAIR 10
Match: AT5G02530.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 145.6 bits (366), Expect = 4.2e-35
Identity = 102/180 (56.67%), Postives = 118/180 (65.56%), Query Frame = 0


Query: 25  YLQNLD--LINIFALELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN 84
           Y+ NLD  + N    ELFSEVGDLKRY I+YD+SGRSKGTAEVVFSR+ DALAA+KRYNN
Sbjct: 111 YISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNN 170

Query: 85  VQLDGKPMKLEIVGANIVTPVLPAPS---------------NPNF-----GNSSGFLRG- 144
           VQLDGK MK+EIVG N+  P LP  +               N NF     GN +G  RG 
Sbjct: 171 VQLDGKLMKIEIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGR 230

Query: 145 GRALGRNRGGGRGRG---PGRGGRGRG----NGRGGGEKLSAEDLDADLEKYHEEAXKLS 175
           G  +GR RGGG G G    GRG RGRG     GRG  E +SAEDLDA+L+KYH+EA + S
Sbjct: 231 GGFMGRPRGGGFGGGNFRGGRGARGRGGRGSGGRGRDENVSAEDLDAELDKYHKEAMETS 290

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g12950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L773	1.2e-34	61.49	THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1	[more]
Q8L719	1.0e-33	56.04	THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1	[more]
Q6NQ72	7.9e-23	43.01	THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1	[more]
Q94EH8	1.0e-22	43.37	THO complex subunit 4C OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1	[more]
B5FXN8	1.8e-19	50.00	THO complex subunit 4 OS=Taeniopygia guttata OX=59729 GN=ALYREF PE=2 SV=1	[more]

BLAST of Cp4.1LG02g12950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023523169.1	2.43e-81	90.79	THO complex subunit 4A-like isoform X3 [Cucurbita pepo subsp. pepo] >XP_02352317...	[more]
XP_022948706.1	3.99e-80	90.13	THO complex subunit 4A-like isoform X2 [Cucurbita moschata]	[more]
XP_023523167.1	1.67e-79	90.20	THO complex subunit 4A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_02352316...	[more]
XP_022997830.1	2.30e-79	88.82	THO complex subunit 4A-like isoform X2 [Cucurbita maxima]	[more]
XP_022948705.1	2.74e-78	89.54	THO complex subunit 4A-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Cp4.1LG02g12950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G9Y5	1.93e-80	90.13	THO complex subunit 4A-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1KAZ3	1.11e-79	88.82	THO complex subunit 4A-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114926...	[more]
A0A6J1GAN0	1.33e-78	89.54	THO complex subunit 4A-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1KCN1	7.63e-78	88.24	THO complex subunit 4A-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114926...	[more]
A0A1S3C5R6	3.74e-69	78.85	THO complex subunit 4A OS=Cucumis melo OX=3656 GN=LOC103497214 PE=4 SV=1	[more]

BLAST of Cp4.1LG02g12950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59950.5	4.9e-36	61.07	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.1	8.4e-36	61.49	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.2	8.4e-36	61.49	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.3	8.4e-36	61.49	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.2	4.2e-35	56.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 167..187
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..167
None	No IPR available	PANTHER	PTHR19965:SF67	OS12G0100100 PROTEIN	coord: 33..170 coord: 170..191
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 33..170 coord: 170..191
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 19..93 e-value: 4.8E-5 score: 32.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 38..90 e-value: 7.7E-9 score: 35.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 18..97 score: 11.673454
IPR025715	Chromatin target of PRMT1 protein, C-terminal	SMART	SM01218	FoP_duplication_2	coord: 108..191 e-value: 2.7E-13 score: 60.2
IPR025715	Chromatin target of PRMT1 protein, C-terminal	PFAM	PF13865	FoP_duplication	coord: 121..188 e-value: 3.3E-12 score: 46.9
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 30..156 e-value: 2.8E-18 score: 68.3
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 38..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g12950.1	Cp4.1LG02g12950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding