Cp4.1LG02g12360 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g12360
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	60S ribosomal protein L38
Location	Cp4.1LG02: 11861217 .. 11862783 (-)
RNA-Seq Expression	Cp4.1LG02g12360
Synteny	Cp4.1LG02g12360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACGGCCCATTAAGTCAGTTTCCCCAAACCTTAGAATGGGCCATGGACCTTTGGGCCTCGGATTTCTGAAACCCTAAATCTGGCACTCCTTATTCCTTACTCGCTCTCCATTTGACAACGCCGTTCGCATTCGGGTCATCTCTCTTCTTCTCGCAGCCGCCCGAAAATGGTGATCTTTCCTCTCGTCTATGCTTATTTCTGTTCATCTGCTTCGCTCTTCGTATCTATGATGCATTTTGTCACTCTTGGTTTTTCTGTTAATGCACTTACCTATGTGTCGATTCATACTAGGGTTCATGGCCGAGTTTCTGTTGTATCCAATCAATAACTTGCTTTCTGTGCTTTCTGTATGCTAGAGTTCTCCAATTATTTGATTGAATGTTTGAATGCTAAAGTTATTCCTGCTGTTGAGGATAGTATTATTGGATATTTGGCGAAAACTTTTAGAATAATTGAACTAAGAATCTGGTGCTGATAAGAATTCGGATCAGGTTCCTTCAGTTGTATAAGTTCGACTATTCGGCCATGATCATGGTCACTCAACTTTGATTCTCTACGCTTGTACTGAAAAATGTTATGGTCGGGTACTTCTATTCCGTGTCGTCTTATGTGTTCTGACGTTCATTCATTGTCTGGATGGTTCTCCTTCCCATTTAGTTCACATTATTTCAAGCATTCCTGAAGTGAATGGATGGTATAGATTTATCGTTTTTGCAGTTGATGTTCTCATAAACTGTTCCGTGTCTTGAATGGGTTGATGAACTTGATGAATACCATTGTTTTTGAAAAAGAACAGTATGGCTGAAATTCCCTCTTGTGTATTGTTTTGGACAGCCGAAGCAAATCCACGAGATAAAAGACTTTCTTCTCACTGCAAGAAGAAAGGATGCCCGTTCTGTCAAAATCAAGAGGAGCAAAGATGTAGTTAAGTTTAAGGTTCGCTGCTCGAAGTACCTTTACACGCTCTGCGTGTTCGACTCTGAGAAGGCAGACAAATTGAAGCAGTCTCTTCCACCAGGTAATCTTTTTGGTTCTTACCCAATTTATAACAGTATATTCTCGAGTTCGTCTGATTGATTTCGGAACTGTACTATTAAATTGTGGCATTTCATTATTCAGCAAGAAAGAACAGCCATAGAGTAATAGACTGTTCTTGTTACATTTCTACATAGAATTCAAATTTGTGCTTAATTTTGTTCTTCAACTTGTTTCCATTACAACACAGATGTTTGGTTTAATTTCTTGTAGGTTTGAGCGTGCAAGATCTTTGAAGAAGTAGGGAGTCATTTTCTGAGATGGGTATGAAAAAAATTCAGGAGCTGAAGGAGAAGTTTATCATTTCTTTTGTATTCGCGTCATGCTGGATGTTTTAATTATGAAGTGATCCCCATTTTTGTCATCATATGCTAGAGATATTGGAGTTGGTTTTCCCTTTTAGTGTTTCTTAAATTTTATGAACTCTTTCAGATTATGAACACTCGAGATTTCTAGTTCAATCAAATCACCATTGGCTCGTTTGCTCCTTTATTTTCCTCGATTCTATTTGACCTTAAACTTCCTATGAACA

mRNA sequence

TACGGCCCATTAAGTCAGTTTCCCCAAACCTTAGAATGGGCCATGGACCTTTGGGCCTCGGATTTCTGAAACCCTAAATCTGGCACTCCTTATTCCTTACTCGCTCTCCATTTGACAACGCCGTTCGCATTCGGGTCATCTCTCTTCTTCTCGCAGCCGCCCGAAAATGCCGAAGCAAATCCACGAGATAAAAGACTTTCTTCTCACTGCAAGAAGAAAGGATGCCCGTTCTGTCAAAATCAAGAGGAGCAAAGATGTAGTTAAGTTTAAGGTTCGCTGCTCGAAGTACCTTTACACGCTCTGCGTGTTCGACTCTGAGAAGGCAGACAAATTGAAGCAGTCTCTTCCACCAGGTTTGAGCGTGCAAGATCTTTGAAGAAGTAGGGAGTCATTTTCTGAGATGGGTATGAAAAAAATTCAGGAGCTGAAGGAGAAGTTTATCATTTCTTTTGTATTCGCGTCATGCTGGATGTTTTAATTATGAAGTGATCCCCATTTTTGTCATCATATGCTAGAGATATTGGAGTTGGTTTTCCCTTTTAGTGTTTCTTAAATTTTATGAACTCTTTCAGATTATGAACACTCGAGATTTCTAGTTCAATCAAATCACCATTGGCTCGTTTGCTCCTTTATTTTCCTCGATTCTATTTGACCTTAAACTTCCTATGAACA

Coding sequence (CDS)

ATGCCGAAGCAAATCCACGAGATAAAAGACTTTCTTCTCACTGCAAGAAGAAAGGATGCCCGTTCTGTCAAAATCAAGAGGAGCAAAGATGTAGTTAAGTTTAAGGTTCGCTGCTCGAAGTACCTTTACACGCTCTGCGTGTTCGACTCTGAGAAGGCAGACAAATTGAAGCAGTCTCTTCCACCAGGTTTGAGCGTGCAAGATCTTTGA

Protein sequence

MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Homology

[Close]

BLAST of Cp4.1LG02g12360 vs. ExPASy Swiss-Prot
Match: O22860 (60S ribosomal protein L38 OS=Arabidopsis thaliana OX=3702 GN=RPL38A PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.7e-31
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of Cp4.1LG02g12360 vs. ExPASy Swiss-Prot
Match: P46291 (60S ribosomal protein L38 OS=Solanum lycopersicum OX=4081 GN=RPL38 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 4.5e-29
Identity = 63/69 (91.30%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of Cp4.1LG02g12360 vs. ExPASy Swiss-Prot
Match: Q95V84 (60S ribosomal protein L38 OS=Branchiostoma belcheri OX=7741 GN=RPL38 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 6.1e-26
Identity = 57/69 (82.61%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGL+V++L
Sbjct: 61 PPGLAVKEL 69

[Close]

BLAST of Cp4.1LG02g12360 vs. ExPASy Swiss-Prot
Match: Q9JJI8 (60S ribosomal protein L38 OS=Mus musculus OX=10090 GN=Rpl38 PE=1 SV=3)

HSP 1 Score: 111.7 bits (278), Expect = 3.3e-24
Identity = 54/69 (78.26%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGL+V+DL
Sbjct: 61 PPGLAVKDL 69

[Close]

BLAST of Cp4.1LG02g12360 vs. ExPASy Swiss-Prot
Match: Q32PB9 (60S ribosomal protein L38 OS=Bos taurus OX=9913 GN=RPL38 PE=3 SV=4)

HSP 1 Score: 110.2 bits (274), Expect = 9.7e-24
Identity = 53/69 (76.81%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGL+V++L
Sbjct: 61 PPGLAVKEL 69

[Close]

BLAST of Cp4.1LG02g12360 vs. NCBI nr
Match: XP_002514807.2 (60S ribosomal protein L38 [Ricinus communis] >XP_003631881.1 PREDICTED: 60S ribosomal protein L38 [Vitis vinifera] >XP_004145035.1 60S ribosomal protein L38 [Cucumis sativus] >XP_008441729.1 PREDICTED: 60S ribosomal protein L38 [Cucumis melo] >XP_008460031.1 PREDICTED: 60S ribosomal protein L38 [Cucumis melo] >XP_008460032.1 PREDICTED: 60S ribosomal protein L38 [Cucumis melo] >XP_010242739.1 PREDICTED: 60S ribosomal protein L38 [Nelumbo nucifera] >XP_010258506.1 PREDICTED: 60S ribosomal protein L38 [Nelumbo nucifera] >XP_010672261.1 PREDICTED: 60S ribosomal protein L38 [Beta vulgaris subsp. vulgaris] >XP_010673886.1 PREDICTED: 60S ribosomal protein L38 [Beta vulgaris subsp. vulgaris] >XP_011620720.1 60S ribosomal protein L38 [Amborella trichopoda] >XP_011649040.2 60S ribosomal protein L38 [Cucumis sativus] >XP_011656729.1 60S ribosomal protein L38 [Cucumis sativus] >XP_015583639.1 60S ribosomal protein L38 [Ricinus communis] >XP_021647103.1 60S ribosomal protein L38 [Hevea brasiliensis] >XP_021680970.1 60S ribosomal protein L38 [Hevea brasiliensis] >XP_021734344.1 60S ribosomal protein L38 [Chenopodium quinoa] >XP_021772297.1 60S ribosomal protein L38 [Chenopodium quinoa] >XP_021896712.1 60S ribosomal protein L38 [Carica papaya] >XP_021906662.1 60S ribosomal protein L38 [Carica papaya] >XP_022145242.1 60S ribosomal protein L38 [Momordica charantia] >XP_022145247.1 60S ribosomal protein L38 [Momordica charantia] >XP_022946385.1 60S ribosomal protein L38 isoform X2 [Cucurbita moschata] >XP_022946386.1 60S ribosomal protein L38 [Cucurbita moschata] >XP_022949560.1 60S ribosomal protein L38 [Cucurbita moschata] >XP_022959603.1 60S ribosomal protein L38 [Cucurbita moschata] >XP_022972864.1 60S ribosomal protein L38 isoform X2 [Cucurbita maxima] >XP_022972865.1 60S ribosomal protein L38 [Cucurbita maxima] >XP_022997957.1 60S ribosomal protein L38 [Cucurbita maxima] >XP_023004176.1 60S ribosomal protein L38 [Cucurbita maxima] >XP_023513714.1 60S ribosomal protein L38 [Cucurbita pepo subsp. pepo] >XP_023524963.1 60S ribosomal protein L38 [Cucurbita pepo subsp. pepo] >XP_023545548.1 60S ribosomal protein L38 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023545639.1 60S ribosomal protein L38 isoform X2 [Cucurbita pepo subsp. pepo] >XP_024024522.1 60S ribosomal protein L38 [Morus notabilis] >XP_024031738.1 60S ribosomal protein L38 [Morus notabilis] >XP_027075173.1 60S ribosomal protein L38 [Coffea arabica] >XP_027078788.1 60S ribosomal protein L38 [Coffea arabica] >XP_027085758.1 60S ribosomal protein L38 [Coffea arabica] >XP_027087203.1 60S ribosomal protein L38 [Coffea arabica] >XP_027089115.1 60S ribosomal protein L38 [Coffea arabica] >XP_027178642.1 60S ribosomal protein L38 [Coffea eugenioides] >XP_027184555.1 60S ribosomal protein L38 [Coffea eugenioides] >XP_030470372.1 60S ribosomal protein L38 [Syzygium oleosum] >XP_030472277.1 60S ribosomal protein L38 [Syzygium oleosum] >XP_030481021.1 60S ribosomal protein L38 [Cannabis sativa] >XP_030519369.1 60S ribosomal protein L38 [Rhodamnia argentea] >XP_030528203.1 60S ribosomal protein L38 [Rhodamnia argentea] >XP_030540781.1 60S ribosomal protein L38 [Rhodamnia argentea] >XP_030937456.1 60S ribosomal protein L38 [Quercus lobata] >XP_031273565.1 60S ribosomal protein L38 [Pistacia vera] >XP_031406357.1 60S ribosomal protein L38 [Punica granatum] >XP_031478698.1 60S ribosomal protein L38 [Nymphaea colorata] >XP_031489510.1 60S ribosomal protein L38 [Nymphaea colorata] >XP_038889432.1 60S ribosomal protein L38 [Benincasa hispida] >XP_038906588.1 60S ribosomal protein L38 isoform X2 [Benincasa hispida] >XP_039163455.1 60S ribosomal protein L38 [Eucalyptus grandis] >XP_039167128.1 60S ribosomal protein L38 [Eucalyptus grandis] >KAA8527272.1 hypothetical protein F0562_034631 [Nyssa sinensis] >KAF3972214.1 hypothetical protein CMV_004269 [Castanea mollissima] >KAF8038440.1 hypothetical protein BT93_B1090 [Corymbia citriodora subsp. variegata] >KAG6592978.1 60S ribosomal protein L38, partial [Cucurbita argyrosperma subsp. sororia] >OAY32247.1 hypothetical protein MANES_13G002900v8 [Manihot esculenta] >PON32581.1 Ribosomal protein [Parasponia andersonii] >PON93714.1 Ribosomal protein [Trema orientale])

HSP 1 Score: 135 bits (341), Expect = 4.77e-40
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLSVQDL 69
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of Cp4.1LG02g12360 vs. NCBI nr
Match: QCG74680.1 (60S ribosomal protein L38-like protein, partial [Coffea canephora])

HSP 1 Score: 135 bits (341), Expect = 7.54e-40
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 17 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 76

Query: 61 PPGLSVQDL 69
          PPGLSVQDL
Sbjct: 77 PPGLSVQDL 85

[Close]

BLAST of Cp4.1LG02g12360 vs. NCBI nr
Match: KCW87739.1 (hypothetical protein EUGRSUZ_A00108, partial [Eucalyptus grandis])

HSP 1 Score: 135 bits (341), Expect = 1.18e-39
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 32  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 91

Query: 61  PPGLSVQDL 69
           PPGLSVQDL
Sbjct: 92  PPGLSVQDL 100

[Close]

BLAST of Cp4.1LG02g12360 vs. NCBI nr
Match: XP_008793782.2 (60S ribosomal protein L38 [Phoenix dactylifera])

HSP 1 Score: 135 bits (340), Expect = 1.32e-39
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARS+KIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 24 MPKQIHEIKDFLLTARRKDARSIKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 83

Query: 61 PPGLSVQDL 69
          PPGLSVQDL
Sbjct: 84 PPGLSVQDL 92

[Close]

BLAST of Cp4.1LG02g12360 vs. NCBI nr
Match: CDP04642.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 135 bits (341), Expect = 1.33e-39
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 36  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 95

Query: 61  PPGLSVQDL 69
           PPGLSVQDL
Sbjct: 96  PPGLSVQDL 104

[Close]

BLAST of Cp4.1LG02g12360 vs. ExPASy TrEMBL
Match: A0A6J1I9U6 (60S ribosomal protein L38 OS=Cucurbita maxima OX=3661 GN=LOC111471374 PE=3 SV=1)

HSP 1 Score: 135 bits (341), Expect = 2.31e-40
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLSVQDL 69
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of Cp4.1LG02g12360 vs. ExPASy TrEMBL
Match: A0A1S3CB44 (60S ribosomal protein L38 OS=Cucumis melo OX=3656 GN=LOC103498968 PE=3 SV=1)

HSP 1 Score: 135 bits (341), Expect = 2.31e-40
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLSVQDL 69
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of Cp4.1LG02g12360 vs. ExPASy TrEMBL
Match: A0A5J5AU72 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_031170 PE=3 SV=1)

HSP 1 Score: 135 bits (341), Expect = 2.31e-40
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLSVQDL 69
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of Cp4.1LG02g12360 vs. ExPASy TrEMBL
Match: A0A6J1CW23 (60S ribosomal protein L38 OS=Momordica charantia OX=3673 GN=LOC111014746 PE=3 SV=1)

HSP 1 Score: 135 bits (341), Expect = 2.31e-40
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLSVQDL 69
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of Cp4.1LG02g12360 vs. ExPASy TrEMBL
Match: A0A6P6UE62 (60S ribosomal protein L38 OS=Coffea arabica OX=13443 GN=LOC113710358 PE=3 SV=1)

HSP 1 Score: 135 bits (341), Expect = 2.31e-40
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLSVQDL 69
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of Cp4.1LG02g12360 vs. TAIR 10
Match: AT2G43460.1 (Ribosomal L38e protein family )

HSP 1 Score: 134.8 bits (338), Expect = 2.6e-32
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of Cp4.1LG02g12360 vs. TAIR 10
Match: AT3G59540.1 (Ribosomal L38e protein family )

HSP 1 Score: 134.8 bits (338), Expect = 2.6e-32
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g12360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22860	3.7e-31	95.65	60S ribosomal protein L38 OS=Arabidopsis thaliana OX=3702 GN=RPL38A PE=3 SV=1	[more]
P46291	4.5e-29	91.30	60S ribosomal protein L38 OS=Solanum lycopersicum OX=4081 GN=RPL38 PE=3 SV=1	[more]
Q95V84	6.1e-26	82.61	60S ribosomal protein L38 OS=Branchiostoma belcheri OX=7741 GN=RPL38 PE=3 SV=1	[more]
Q9JJI8	3.3e-24	78.26	60S ribosomal protein L38 OS=Mus musculus OX=10090 GN=Rpl38 PE=1 SV=3	[more]
Q32PB9	9.7e-24	76.81	60S ribosomal protein L38 OS=Bos taurus OX=9913 GN=RPL38 PE=3 SV=4	[more]

BLAST of Cp4.1LG02g12360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_002514807.2	4.77e-40	100.00	60S ribosomal protein L38 [Ricinus communis] >XP_003631881.1 PREDICTED: 60S ribo...	[more]
QCG74680.1	7.54e-40	100.00	60S ribosomal protein L38-like protein, partial [Coffea canephora]	[more]
KCW87739.1	1.18e-39	100.00	hypothetical protein EUGRSUZ_A00108, partial [Eucalyptus grandis]	[more]
XP_008793782.2	1.32e-39	98.55	60S ribosomal protein L38 [Phoenix dactylifera]	[more]
CDP04642.1	1.33e-39	100.00	unnamed protein product [Coffea canephora]	[more]

BLAST of Cp4.1LG02g12360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I9U6	2.31e-40	100.00	60S ribosomal protein L38 OS=Cucurbita maxima OX=3661 GN=LOC111471374 PE=3 SV=1	[more]
A0A1S3CB44	2.31e-40	100.00	60S ribosomal protein L38 OS=Cucumis melo OX=3656 GN=LOC103498968 PE=3 SV=1	[more]
A0A5J5AU72	2.31e-40	100.00	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_031170 PE=3 SV=1	[more]
A0A6J1CW23	2.31e-40	100.00	60S ribosomal protein L38 OS=Momordica charantia OX=3673 GN=LOC111014746 PE=3 SV...	[more]
A0A6P6UE62	2.31e-40	100.00	60S ribosomal protein L38 OS=Coffea arabica OX=13443 GN=LOC113710358 PE=3 SV=1	[more]

BLAST of Cp4.1LG02g12360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43460.1	2.6e-32	95.65	Ribosomal L38e protein family	[more]
AT3G59540.1	2.6e-32	95.65	Ribosomal L38e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002675	Ribosomal protein L38e	PFAM	PF01781	Ribosomal_L38e	coord: 2..68 e-value: 2.0E-34 score: 117.5
IPR002675	Ribosomal protein L38e	PANTHER	PTHR10965	60S RIBOSOMAL PROTEIN L38	coord: 1..69
IPR038464	Ribosomal protein L38e superfamily	GENE3D	3.30.720.90		coord: 1..69 e-value: 1.5E-36 score: 126.3
None	No IPR available	PANTHER	PTHR10965:SF18	SUBFAMILY NOT NAMED	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g12360.1	Cp4.1LG02g12360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022618	ribonucleoprotein complex assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome